* feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: cs3d tools and toolGroups (#20) * add more tools to work with cs3d mode * fix hotkeys * add stack manager usage for stach viewports * add image scrollbar * wip viewport overlay * fix toAnnotation schema for tools * fix the unnecessary size change that triggered resize * hanging protocol improvement to allow unmatched errors * study description matching for hanging protocol * fix the displaysetOptions to work * fix handle the active tool when a new viewport is added * fix separate toolGroups for mode * apply review comments * apply review comments * yarn lock * feat: overlay component (#21) * fix default displayset options * add viewport overlay * apply review comments * feat: loading and orientation indicators (#22) * add loading indicator * add orientation marker initial work * apply review comments * fix: orientation markers (#23) * finished the orientation markers * fix various broken cypress tests * apply review comments * update yarn lock * feat: re-working measurement tracking mode with cornerstone3d (#2805) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: Add Measurement tracking mode with cs3D (#2789) * feat: first render for cornerstone3d tracked viewport * make tool active work * wip for SR extension * renamed dicom sr to cornerstone dicom sr * remove cornerstone from dicom pdf and video * move dicom sr logic to sr extension * feat: Add hydration for the length tool * fix SR display tool for length using cs3d * fix default config * fix: various bugs with sr viewport and tracking * fix promptying to continue tracking for when SR is created * feat: add keep trackign of unique identifiers * fix hydration for same imageIds * feat: Add SR toolGroup creation on modeEnter * feat: remove the need for separate mapper for SR hydration * add SR display for ellipse * handle hydration of elliptical ROI tool * remove cornerstone extension * add arrow mapping * feat: Add ArrowAnnotate SR display and hydration * apply review comments * apply review comments * move viewport labels to the viewportData * apply review comments * fix: integration cypress tests with cornerstone3D and add CINE tool (#2795) * fix: integration cypress tests with cornerstone3D * revert to addOrUpdate as it makes more sense * fix local drag and drop * fix tests * move dicomLoaderService to cornerstone extension * fix various import bugs * fix bug for local PT series * fix various unit tests * bump cs3d versions * add angle and magnify tool * bump dependencies to avoid broken peerDeps * feat: add initial work for capture using cs3d * feat: show annotations on the image capture * feat: add svg layer export * feat: Add CINE Tool * feat: remove unnecessary viewport rendering for cine state changes Co-authored-by: Erik Ziegler <erik.sweed@gmail.com> * docs: modify and improve documentation (#2800) * cleanup docs versionings * feat: Add all version explanations * version docs for 3.0 * wip for changing docs * wip for updated docs * add utility module documentation * fix demo with nohoisting of history * add slides and video to resources * apply review comments * fix: drag and drop SR into SR viewport (#2803) * update yarn lock Co-authored-by: Erik <erik.sweed@gmail.com> * update pathnames to match v3-stable * update the e2e pathname * fix: various bugs with regard to tracking workflow (#2811) * fix: various issues with measurement panel * fix: update default tool style for annotations * fix: annotatoin label getting removed * feat: Add backward compatibility for SR hydration with legacy cornerstone * fix: cursors and ellipse ROI max style * fix: ArrowAnnotate SRDisplay * apply review comments * bump package versions * fix: bugin rehydration of SR * fix: e2e tests * fix active viewport thickness and arrowTool ui * add readme for measurement tracking * use uploaded image for readme * add back images * try to fix e2e test * fix: window level presets hotkeys * Update README.md * update yarn lock * feat: volume api and TMTV mode (#2817) * feat: volumeAPI and TMTV mode * feat: use cs3d cache service to obtain viewportData * wip for volume api * wip: fusion viewport * feat: add blend mode option * wip for image scrollbar * fix drag and drop thumbnail * wip for image scrollbar for voluems * fix: element mismatch bug for scroll * feat: Add image scrollbar to volumes * feat: add syncGroups to volume api * feat: add tmtv mode initial setup * feat: add initial image options for the stack viewports * feat: Add custom load strategy for volume viewports via HP * apply review comments fix: Jump presets cs3d (#2812) * feat: Add JumpPreset to OHIF for Cornerstone3D * fix: accessing viewport service from servicesManager feat: volume API and TMTV mode (#2814) * fix: do not display overlays on mip viewports * feat: add optional disableCommands for toggle buttons * fix: toggleCrossharis * feat: config the crosshairs * feat: add PetSUV Panel for changing metadata * feat: initial work for the rectangleROIThreshold panel * wip: measurement service * roi threshold working * feat: Add displayText to segmentations * feat: add remove segmentation * feat: add csv export * feat: add RT export for annotations in tmtv mode * fix: fusion to use pt in tmtv mode and measuremet mappings * fix: various bugs * apply review comments * apply review comments * feat: add fusion color maps * add readme to tmtv mode * Update README.md * fix: try to fix build * fix unit tests * Update README.md * feat: add about to the panel * fix: changing strategy in roi panel * apply review comments * update package versions * wip for stackPrefetch * fix: cornerstone3d hydration and renaming (#2818) * update readme * renamed cornerstone extension * wip for renaming cornerstone3D variables * wip for renaming cornerstone3D variables * wip for fixing bugs for SR viewport * fix: jumpToMeasurement and initial label after hydration * fix: fileName capitalization * feat: use the new prefetch stack in the cs3d (#2820) * feat: use the new prefetch stack in the cs3d * use viewport scroll api for stack viewport * fix cine stop when scrollbar changes * feat: use new prefetch events * fix loading state to not show repeatedly * fix: various bugs for tmtv mode thresholding and new icons (#2823) * feat: make tmtv mode available in worklist * feat: add new icons for tmtv mode * feat: add fusion color icon * fix: parallel scale calculation * fix: bump Cornerstone to get large image support working * fix: Fix issues with CPU viewport flipping, including config files * fix: bump cornerstone to fix magnify tool * fix: Bump Cornerstone version to fix resetCamera issue in StackViewport * ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys * fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors * feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838) Also works with the compile time add that the existing cli uses, so that both build types work. Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes. * bump: dependency versions to fix hydration bugs (#2848) * bump: dcmjs version to fix hydration bugs * try to fix tests * bump dependency versions Co-authored-by: Alireza <ar.sedghi@gmail.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
213 lines
6.2 KiB
TypeScript
213 lines
6.2 KiB
TypeScript
import React, { useEffect, useState } from 'react';
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import PropTypes from 'prop-types';
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import { MeasurementTable, Dialog, Input, useViewportGrid } from '@ohif/ui';
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import ActionButtons from './ActionButtons';
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import debounce from 'lodash.debounce';
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import { utils } from '@ohif/core';
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const { downloadCSVReport } = utils;
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// tools with measurements to display inside the panel
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const MEASUREMENT_TOOLS = [
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'EllipticalROI',
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'RectangleROI',
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'Length',
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'Bidirectional',
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];
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export default function PanelMeasurementTable({
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servicesManager,
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commandsManager,
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}) {
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const [viewportGrid, viewportGridService] = useViewportGrid();
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const { MeasurementService, UIDialogService } = servicesManager.services;
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const [displayMeasurements, setDisplayMeasurements] = useState([]);
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useEffect(() => {
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const debouncedSetDisplayMeasurements = debounce(
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setDisplayMeasurements,
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100
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);
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// ~~ Initial
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setDisplayMeasurements(_getMappedMeasurements(MeasurementService));
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// ~~ Subscription
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const added = MeasurementService.EVENTS.MEASUREMENT_ADDED;
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const addedRaw = MeasurementService.EVENTS.RAW_MEASUREMENT_ADDED;
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const updated = MeasurementService.EVENTS.MEASUREMENT_UPDATED;
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const removed = MeasurementService.EVENTS.MEASUREMENT_REMOVED;
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const cleared = MeasurementService.EVENTS.MEASUREMENTS_CLEARED;
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const subscriptions = [];
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[added, addedRaw, updated, removed, cleared].forEach(evt => {
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subscriptions.push(
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MeasurementService.subscribe(evt, () => {
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debouncedSetDisplayMeasurements(
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_getMappedMeasurements(MeasurementService)
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);
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}).unsubscribe
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);
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});
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return () => {
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subscriptions.forEach(unsub => {
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unsub();
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});
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debouncedSetDisplayMeasurements.cancel();
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};
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}, []);
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async function exportReport() {
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const measurements = MeasurementService.getMeasurements();
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downloadCSVReport(measurements, MeasurementService);
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}
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const jumpToImage = ({ uid, isActive }) => {
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MeasurementService.jumpToMeasurement(viewportGrid.activeViewportIndex, uid);
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onMeasurementItemClickHandler({ uid, isActive });
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};
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const onMeasurementItemEditHandler = ({ uid, isActive }) => {
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const measurement = MeasurementService.getMeasurement(uid);
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//Todo: why we are jumping to image?
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// jumpToImage({ id, isActive });
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const onSubmitHandler = ({ action, value }) => {
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switch (action.id) {
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case 'save': {
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MeasurementService.update(
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uid,
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{
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...measurement,
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...value,
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},
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true
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);
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}
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}
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UIDialogService.dismiss({ id: 'enter-annotation' });
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};
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UIDialogService.create({
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id: 'enter-annotation',
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centralize: true,
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isDraggable: false,
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showOverlay: true,
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content: Dialog,
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contentProps: {
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title: 'Enter your annotation',
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noCloseButton: true,
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value: { label: measurement.label || '' },
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body: ({ value, setValue }) => {
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const onChangeHandler = event => {
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event.persist();
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setValue(value => ({ ...value, label: event.target.value }));
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};
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const onKeyPressHandler = event => {
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if (event.key === 'Enter') {
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onSubmitHandler({ value, action: { id: 'save' } });
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}
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};
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return (
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<div className="p-4 bg-primary-dark">
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<Input
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autoFocus
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className="mt-2 bg-black border-primary-main"
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type="text"
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containerClassName="mr-2"
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value={value.label}
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onChange={onChangeHandler}
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onKeyPress={onKeyPressHandler}
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/>
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</div>
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);
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},
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actions: [
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// temp: swap button types until colors are updated
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{ id: 'cancel', text: 'Cancel', type: 'primary' },
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{ id: 'save', text: 'Save', type: 'secondary' },
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],
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onSubmit: onSubmitHandler,
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},
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});
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};
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const onMeasurementItemClickHandler = ({ uid, isActive }) => {
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if (!isActive) {
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const measurements = [...displayMeasurements];
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const measurement = measurements.find(m => m.uid === uid);
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measurements.forEach(m => (m.isActive = m.uid !== uid ? false : true));
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measurement.isActive = true;
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setDisplayMeasurements(measurements);
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}
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};
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return (
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<>
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<div
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className="overflow-x-hidden overflow-y-auto invisible-scrollbar"
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data-cy={'measurements-panel'}
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>
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<MeasurementTable
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title="Measurements"
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amount={displayMeasurements.length}
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data={displayMeasurements}
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onClick={jumpToImage}
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onEdit={onMeasurementItemEditHandler}
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/>
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</div>
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<div className="flex justify-center p-4">
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<ActionButtons
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onExportClick={exportReport}
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onCreateReportClick={() => {}}
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/>
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</div>
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</>
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);
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}
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PanelMeasurementTable.propTypes = {
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servicesManager: PropTypes.shape({
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services: PropTypes.shape({
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MeasurementService: PropTypes.shape({
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getMeasurements: PropTypes.func.isRequired,
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subscribe: PropTypes.func.isRequired,
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EVENTS: PropTypes.object.isRequired,
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VALUE_TYPES: PropTypes.object.isRequired,
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}).isRequired,
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}).isRequired,
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}).isRequired,
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};
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function _getMappedMeasurements(MeasurementService) {
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const measurements = MeasurementService.getMeasurements();
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// filter out measurements whose toolName is not in MEASUREMENT_TOOLS
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const measurementTools = measurements.filter(measurement =>
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MEASUREMENT_TOOLS.includes(measurement.toolName)
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);
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const mappedMeasurements = measurementTools.map((m, index) =>
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_mapMeasurementToDisplay(m, index, MeasurementService.VALUE_TYPES)
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);
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return mappedMeasurements;
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}
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function _mapMeasurementToDisplay(measurement, index, types) {
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const { displayText, uid, label, type } = measurement;
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return {
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uid,
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label: label || '(empty)',
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measurementType: type,
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displayText: displayText || [],
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// TODO: handle one layer down
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isActive: false, // activeMeasurementItem === i + 1,
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};
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}
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