* feat: add initial sop class handler for SEG * feat: move segmentation service * update segmentation service methods * fix: viewport data structure * feat: Add initial render for the DICOM SEG for each displaySet * fix: various wrong architectural dependencies between services * feat: initial separate SEG display in each viewport * feat: refactore viewport action bar * initial work for SEG hydration * fix: various bugs regarding drag and dropping different viewports * fix: rendering issues for multiple seg displaysets * fix: bugs for thumbnail and hydration * feat: fix the initial segment color * update after rebase * feat: initial design for the segmentation group table * feat: initial new design for the segmentation panel * feat: segmentation panel * feat: make segmentation appear on all related viewports * fix: segmentation load bug based on functional groups * initial work for segmentation crosshairs * fix: various stylings and functionality * fix: various stylings for the seg panel * fix: overflow styles * feat: add more ui components * feat: added segmentation config * feat: add jump to segment * feat: add jump to segment for DICOM SEG viewport * fix: bugs after rebase * feat: jump in segmentation viewport * fix: mpr support for seg * feat: add more icons * feat: new icons * feat: add new side panel * feat: add segmentation config * feat: add loading indicator to ohif * feat: make hanging protocols follow matching rules for viewports * feat: enhance drag and drop to be hanging protocol aware * fix: mpr restore previous layout * fix: crosshairs toggle * fix: add auth headers to the dicom loader via dicomwebclient * fix: bug for crosshairs toggle in mpr * fix: seg viewport reusing old toolGroup * feat: add loading animation with lottie * fix: various bugs for Segmentation hydration in mpr * feat: change outline alpha to outline opacity * feat: loading indicator for seg viewport * fix: various segmentation group styles * fix: local mode for seg * feat: add animation for the highlight * fix: loading indicatro to show segment indices * feat: enhance modality drop down ui * fix: panels * fix: download form * fix: layout shift in loading indicator * fix: loading indicator to have correct values * fix: update software number * fix: image jump between MPR and default * fix: segmentation cleanup and cine service cleanup * fix: segmentation toolgroup clena up * fix: highlight interval should not trigger again * fix: issue with multiframe sorting * rename: change onSeriesChange to onArrowsClick * fix: buttons for tmtv and layout shift * fix: various bugs wrt crosshairs * fix: crosshairs re init on reset camera * fix: middle slice calculation different from cs middle reset camera * fix: reset camera should reset viewport camera * fix: loading segments in MPR mode * fix: tmtv hp back to before * fix: layout shift * feat: orientation markers for volume viewport * fix: capture for volume viewports * fix: memory leak for back to worklist * fix: loading bar bg color * fix: side panel for only one panel * fix: react select style in production * fix: various styling for segmentation groups * fix: various ui styles * feat: add new segmentation config styles * fix: hover state for segmentation item * fix: side panel layout shift * temp add panels * try to fix scrollbar for thimbnail * fix: scroll not appearing for side panels * feat: changed styles for scrollbar * feat: add cpu fallback warning * fix: webworker destroy * fix: select styles * fix: orientation marker color and position * fix: capture screenshot for volume viewports * fix: hide segment visibility on mpr * fix: reloading an already loaded seg displayset * feat: add is equal * fix: mpr jump to measurements * apply review comments * fix: optimization for the segmentation load * fix: remove unnecessary context menu and hp service reset * fix: segmentation service wrt brush settings * feat: initial work for the stack synchronization * fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements * fix: various react proptypes * fix: thumbnails for the tmtv and change default props to default params * feat: make showing loading indicator configurable and add docs * bump versions and add more docs * fix demo * update cornerstone versions * apply review comments * feat: add reference lines * fix build * fix unit tests * add reference lines icon * fix: e2e tests * fix static wado config * docs: add segmentation service docs * fix: docker build * fix: keep camera and bump versions * Try re-enabling minification to fix deploy previews Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
429 lines
11 KiB
TypeScript
429 lines
11 KiB
TypeScript
import OHIF from '@ohif/core';
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import React from 'react';
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import { ContextMenuMeasurements } from '@ohif/ui';
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import * as cornerstone from '@cornerstonejs/core';
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import * as cornerstoneTools from '@cornerstonejs/tools';
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import {
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init as cs3DInit,
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eventTarget,
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EVENTS,
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metaData,
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volumeLoader,
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imageLoader,
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imageLoadPoolManager,
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Settings,
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} from '@cornerstonejs/core';
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import { Enums, utilities, ReferenceLinesTool } from '@cornerstonejs/tools';
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import {
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cornerstoneStreamingImageVolumeLoader,
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sharedArrayBufferImageLoader,
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} from '@cornerstonejs/streaming-image-volume-loader';
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import initWADOImageLoader from './initWADOImageLoader';
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import initCornerstoneTools from './initCornerstoneTools';
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import { connectToolsToMeasurementService } from './initMeasurementService';
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import callInputDialog from './utils/callInputDialog';
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import initCineService from './initCineService';
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import interleaveCenterLoader from './utils/interleaveCenterLoader';
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import interleaveTopToBottom from './utils/interleaveTopToBottom';
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const cs3DToolsEvents = Enums.Events;
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let CONTEXT_MENU_OPEN = false;
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// TODO: Cypress tests are currently grabbing this from the window?
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window.cornerstone = cornerstone;
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window.cornerstoneTools = cornerstoneTools;
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/**
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*
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*/
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export default async function init({
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servicesManager,
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commandsManager,
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configuration,
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appConfig,
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}) {
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await cs3DInit();
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// For debugging e2e tests that are failing on CI
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cornerstone.setUseCPURendering(Boolean(appConfig.useCPURendering));
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// For debugging large datasets
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const MAX_CACHE_SIZE_1GB = 1073741824;
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const maxCacheSize = appConfig.maxCacheSize;
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cornerstone.cache.setMaxCacheSize(
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maxCacheSize ? maxCacheSize : MAX_CACHE_SIZE_1GB
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);
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initCornerstoneTools();
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Settings.getRuntimeSettings().set(
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'useCursors',
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Boolean(appConfig.useCursors)
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);
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const {
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UserAuthenticationService,
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MeasurementService,
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DisplaySetService,
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UIDialogService,
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UIModalService,
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CineService,
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CornerstoneViewportService,
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HangingProtocolService,
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ToolGroupService,
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SegmentationService,
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ViewportGridService,
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} = servicesManager.services;
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window.SegmentationService = SegmentationService;
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window.DisplaySetService = DisplaySetService;
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window.services = servicesManager.services;
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if (cornerstone.getShouldUseCPURendering()) {
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_showCPURenderingModal(UIModalService, HangingProtocolService);
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}
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const labelmapRepresentation =
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cornerstoneTools.Enums.SegmentationRepresentations.Labelmap;
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cornerstoneTools.segmentation.config.setGlobalRepresentationConfig(
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labelmapRepresentation,
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{
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fillAlpha: 0.3,
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fillAlphaInactive: 0.2,
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outlineOpacity: 1,
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outlineOpacityInactive: 0.65,
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}
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);
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const metadataProvider = OHIF.classes.MetadataProvider;
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volumeLoader.registerVolumeLoader(
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'cornerstoneStreamingImageVolume',
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cornerstoneStreamingImageVolumeLoader
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);
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HangingProtocolService.registerImageLoadStrategy(
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'interleaveCenter',
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interleaveCenterLoader
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);
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HangingProtocolService.registerImageLoadStrategy(
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'interleaveTopToBottom',
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interleaveTopToBottom
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);
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imageLoader.registerImageLoader(
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'streaming-wadors',
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sharedArrayBufferImageLoader
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);
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metaData.addProvider(metadataProvider.get.bind(metadataProvider), 9999);
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imageLoadPoolManager.maxNumRequests = {
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interaction: appConfig?.maxNumRequests?.interaction || 100,
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thumbnail: appConfig?.maxNumRequests?.thumbnail || 75,
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prefetch: appConfig?.maxNumRequests?.prefetch || 10,
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};
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initWADOImageLoader(UserAuthenticationService, appConfig);
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/* Measurement Service */
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const measurementServiceSource = connectToolsToMeasurementService(
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MeasurementService,
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DisplaySetService,
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CornerstoneViewportService
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);
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initCineService(CineService);
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const _getDefaultPosition = event => ({
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x: (event && event.currentPoints.client[0]) || 0,
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y: (event && event.currentPoints.client[1]) || 0,
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});
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const onRightClick = event => {
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if (!UIDialogService) {
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console.warn('Unable to show dialog; no UI Dialog Service available.');
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return;
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}
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const onGetMenuItems = defaultMenuItems => {
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const { element, currentPoints } = event.detail;
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const nearbyToolData = utilities.getAnnotationNearPoint(
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element,
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currentPoints.canvas
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);
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const menuItems = [];
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if (nearbyToolData && nearbyToolData.metadata.toolName !== 'Crosshairs') {
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defaultMenuItems.forEach(item => {
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item.value = nearbyToolData;
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item.element = element;
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menuItems.push(item);
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});
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}
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return menuItems;
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};
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CONTEXT_MENU_OPEN = true;
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UIDialogService.dismiss({ id: 'context-menu' });
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UIDialogService.create({
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id: 'context-menu',
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isDraggable: false,
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preservePosition: false,
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defaultPosition: _getDefaultPosition(event.detail),
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content: ContextMenuMeasurements,
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onClickOutside: () => {
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UIDialogService.dismiss({ id: 'context-menu' });
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CONTEXT_MENU_OPEN = false;
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},
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contentProps: {
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onGetMenuItems,
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eventData: event.detail,
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onDelete: item => {
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const { annotationUID } = item.value;
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const uid = annotationUID;
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// Sync'd w/ Measurement Service
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if (uid) {
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measurementServiceSource.remove(uid, {
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element: item.element,
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});
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}
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CONTEXT_MENU_OPEN = false;
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},
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onClose: () => {
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CONTEXT_MENU_OPEN = false;
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UIDialogService.dismiss({ id: 'context-menu' });
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},
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onSetLabel: item => {
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const { annotationUID } = item.value;
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const measurement = MeasurementService.getMeasurement(annotationUID);
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callInputDialog(
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UIDialogService,
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measurement,
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(label, actionId) => {
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if (actionId === 'cancel') {
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return;
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}
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const updatedMeasurement = Object.assign({}, measurement, {
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label,
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});
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MeasurementService.update(
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updatedMeasurement.uid,
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updatedMeasurement,
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true
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);
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},
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false
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);
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CONTEXT_MENU_OPEN = false;
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},
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},
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});
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};
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const resetContextMenu = () => {
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if (!UIDialogService) {
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console.warn('Unable to show dialog; no UI Dialog Service available.');
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return;
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}
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CONTEXT_MENU_OPEN = false;
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UIDialogService.dismiss({ id: 'context-menu' });
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};
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// When a custom image load is performed, update the relevant viewports
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HangingProtocolService.subscribe(
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HangingProtocolService.EVENTS.CUSTOM_IMAGE_LOAD_PERFORMED,
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volumeInputArrayMap => {
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for (const entry of volumeInputArrayMap.entries()) {
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const [viewportId, volumeInputArray] = entry;
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const viewport = CornerstoneViewportService.getCornerstoneViewport(
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viewportId
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);
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CornerstoneViewportService.setVolumesForViewport(
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viewport,
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volumeInputArray
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);
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}
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}
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);
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/*
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* Because click gives us the native "mouse up", buttons will always be `0`
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* Need to fallback to event.which;
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*
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*/
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const contextMenuHandleClick = evt => {
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const mouseUpEvent = evt.detail.event;
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const isRightClick = mouseUpEvent.which === 3;
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const clickMethodHandler = isRightClick ? onRightClick : resetContextMenu;
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clickMethodHandler(evt);
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};
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// const cancelContextMenuIfOpen = evt => {
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// if (CONTEXT_MENU_OPEN) {
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// resetContextMenu();
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// }
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// };
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const newStackCallback = evt => {
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const { element } = evt.detail;
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utilities.stackPrefetch.enable(element);
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};
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const resetCrosshairs = evt => {
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const { element } = evt.detail;
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const { viewportId, renderingEngineId } = cornerstone.getEnabledElement(
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element
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);
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const toolGroup = cornerstoneTools.ToolGroupManager.getToolGroupForViewport(
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viewportId,
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renderingEngineId
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);
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if (!toolGroup || !toolGroup._toolInstances?.['Crosshairs']) {
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return;
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}
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const mode = toolGroup._toolInstances['Crosshairs'].mode;
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if (mode === Enums.ToolModes.Active) {
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toolGroup.setToolActive('Crosshairs');
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} else if (mode === Enums.ToolModes.Passive) {
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toolGroup.setToolPassive('Crosshairs');
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} else if (mode === Enums.ToolModes.Enabled) {
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toolGroup.setToolEnabled('Crosshairs');
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}
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};
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function elementEnabledHandler(evt) {
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const { element } = evt.detail;
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element.addEventListener(
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cs3DToolsEvents.MOUSE_CLICK,
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contextMenuHandleClick
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);
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element.addEventListener(EVENTS.CAMERA_RESET, resetCrosshairs);
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eventTarget.addEventListener(
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EVENTS.STACK_VIEWPORT_NEW_STACK,
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newStackCallback
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);
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}
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function elementDisabledHandler(evt) {
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const { element } = evt.detail;
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element.removeEventListener(
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cs3DToolsEvents.MOUSE_CLICK,
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contextMenuHandleClick
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);
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element.removeEventListener(EVENTS.CAMERA_RESET, resetCrosshairs);
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// TODO - consider removing the callback when all elements are gone
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// eventTarget.removeEventListener(
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// EVENTS.STACK_VIEWPORT_NEW_STACK,
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// newStackCallback
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// );
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}
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eventTarget.addEventListener(
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EVENTS.ELEMENT_ENABLED,
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elementEnabledHandler.bind(null)
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);
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eventTarget.addEventListener(
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EVENTS.ELEMENT_DISABLED,
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elementDisabledHandler.bind(null)
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);
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ViewportGridService.subscribe(
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ViewportGridService.EVENTS.ACTIVE_VIEWPORT_INDEX_CHANGED,
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({ viewportIndex }) => {
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const viewportId = `viewport-${viewportIndex}`;
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const toolGroup = ToolGroupService.getToolGroupForViewport(viewportId);
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if (!toolGroup) {
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return;
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}
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// check if reference lines are active
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const referenceLinesEnabled =
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toolGroup._toolInstances?.['ReferenceLines'].mode ===
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Enums.ToolModes.Enabled;
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if (!referenceLinesEnabled) {
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return;
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}
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toolGroup.setToolConfiguration(
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ReferenceLinesTool.toolName,
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{
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sourceViewportId: viewportId,
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},
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true // overwrite
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);
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// make sure to set it to enabled again since we want to recalculate
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// the source-target lines
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toolGroup.setToolEnabled(ReferenceLinesTool.toolName);
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}
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);
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}
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function CPUModal() {
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return (
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<div>
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<p>
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Your computer does not have enough GPU power to support the default GPU
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rendering mode. OHIF has switched to CPU rendering mode. Please note
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that CPU rendering does not support all features such as Volume
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Rendering, Multiplanar Reconstruction, and Segmentation Overlays.
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</p>
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</div>
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);
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}
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function _showCPURenderingModal(UIModalService, HangingProtocolService) {
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const callback = progress => {
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if (progress === 100) {
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UIModalService.show({
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content: CPUModal,
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title: 'OHIF Fell Back to CPU Rendering',
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});
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return true;
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}
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};
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const { unsubscribe } = HangingProtocolService.subscribe(
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HangingProtocolService.EVENTS.HANGING_PROTOCOL_APPLIED_FOR_VIEWPORT,
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({ progress }) => {
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const done = callback(progress);
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if (done) {
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unsubscribe();
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}
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}
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);
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}
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