ohif-viewer/extensions/cornerstone/src/init.tsx
Alireza 83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00

429 lines
11 KiB
TypeScript

import OHIF from '@ohif/core';
import React from 'react';
import { ContextMenuMeasurements } from '@ohif/ui';
import * as cornerstone from '@cornerstonejs/core';
import * as cornerstoneTools from '@cornerstonejs/tools';
import {
init as cs3DInit,
eventTarget,
EVENTS,
metaData,
volumeLoader,
imageLoader,
imageLoadPoolManager,
Settings,
} from '@cornerstonejs/core';
import { Enums, utilities, ReferenceLinesTool } from '@cornerstonejs/tools';
import {
cornerstoneStreamingImageVolumeLoader,
sharedArrayBufferImageLoader,
} from '@cornerstonejs/streaming-image-volume-loader';
import initWADOImageLoader from './initWADOImageLoader';
import initCornerstoneTools from './initCornerstoneTools';
import { connectToolsToMeasurementService } from './initMeasurementService';
import callInputDialog from './utils/callInputDialog';
import initCineService from './initCineService';
import interleaveCenterLoader from './utils/interleaveCenterLoader';
import interleaveTopToBottom from './utils/interleaveTopToBottom';
const cs3DToolsEvents = Enums.Events;
let CONTEXT_MENU_OPEN = false;
// TODO: Cypress tests are currently grabbing this from the window?
window.cornerstone = cornerstone;
window.cornerstoneTools = cornerstoneTools;
/**
*
*/
export default async function init({
servicesManager,
commandsManager,
configuration,
appConfig,
}) {
await cs3DInit();
// For debugging e2e tests that are failing on CI
cornerstone.setUseCPURendering(Boolean(appConfig.useCPURendering));
// For debugging large datasets
const MAX_CACHE_SIZE_1GB = 1073741824;
const maxCacheSize = appConfig.maxCacheSize;
cornerstone.cache.setMaxCacheSize(
maxCacheSize ? maxCacheSize : MAX_CACHE_SIZE_1GB
);
initCornerstoneTools();
Settings.getRuntimeSettings().set(
'useCursors',
Boolean(appConfig.useCursors)
);
const {
UserAuthenticationService,
MeasurementService,
DisplaySetService,
UIDialogService,
UIModalService,
CineService,
CornerstoneViewportService,
HangingProtocolService,
ToolGroupService,
SegmentationService,
ViewportGridService,
} = servicesManager.services;
window.SegmentationService = SegmentationService;
window.DisplaySetService = DisplaySetService;
window.services = servicesManager.services;
if (cornerstone.getShouldUseCPURendering()) {
_showCPURenderingModal(UIModalService, HangingProtocolService);
}
const labelmapRepresentation =
cornerstoneTools.Enums.SegmentationRepresentations.Labelmap;
cornerstoneTools.segmentation.config.setGlobalRepresentationConfig(
labelmapRepresentation,
{
fillAlpha: 0.3,
fillAlphaInactive: 0.2,
outlineOpacity: 1,
outlineOpacityInactive: 0.65,
}
);
const metadataProvider = OHIF.classes.MetadataProvider;
volumeLoader.registerVolumeLoader(
'cornerstoneStreamingImageVolume',
cornerstoneStreamingImageVolumeLoader
);
HangingProtocolService.registerImageLoadStrategy(
'interleaveCenter',
interleaveCenterLoader
);
HangingProtocolService.registerImageLoadStrategy(
'interleaveTopToBottom',
interleaveTopToBottom
);
imageLoader.registerImageLoader(
'streaming-wadors',
sharedArrayBufferImageLoader
);
metaData.addProvider(metadataProvider.get.bind(metadataProvider), 9999);
imageLoadPoolManager.maxNumRequests = {
interaction: appConfig?.maxNumRequests?.interaction || 100,
thumbnail: appConfig?.maxNumRequests?.thumbnail || 75,
prefetch: appConfig?.maxNumRequests?.prefetch || 10,
};
initWADOImageLoader(UserAuthenticationService, appConfig);
/* Measurement Service */
const measurementServiceSource = connectToolsToMeasurementService(
MeasurementService,
DisplaySetService,
CornerstoneViewportService
);
initCineService(CineService);
const _getDefaultPosition = event => ({
x: (event && event.currentPoints.client[0]) || 0,
y: (event && event.currentPoints.client[1]) || 0,
});
const onRightClick = event => {
if (!UIDialogService) {
console.warn('Unable to show dialog; no UI Dialog Service available.');
return;
}
const onGetMenuItems = defaultMenuItems => {
const { element, currentPoints } = event.detail;
const nearbyToolData = utilities.getAnnotationNearPoint(
element,
currentPoints.canvas
);
const menuItems = [];
if (nearbyToolData && nearbyToolData.metadata.toolName !== 'Crosshairs') {
defaultMenuItems.forEach(item => {
item.value = nearbyToolData;
item.element = element;
menuItems.push(item);
});
}
return menuItems;
};
CONTEXT_MENU_OPEN = true;
UIDialogService.dismiss({ id: 'context-menu' });
UIDialogService.create({
id: 'context-menu',
isDraggable: false,
preservePosition: false,
defaultPosition: _getDefaultPosition(event.detail),
content: ContextMenuMeasurements,
onClickOutside: () => {
UIDialogService.dismiss({ id: 'context-menu' });
CONTEXT_MENU_OPEN = false;
},
contentProps: {
onGetMenuItems,
eventData: event.detail,
onDelete: item => {
const { annotationUID } = item.value;
const uid = annotationUID;
// Sync'd w/ Measurement Service
if (uid) {
measurementServiceSource.remove(uid, {
element: item.element,
});
}
CONTEXT_MENU_OPEN = false;
},
onClose: () => {
CONTEXT_MENU_OPEN = false;
UIDialogService.dismiss({ id: 'context-menu' });
},
onSetLabel: item => {
const { annotationUID } = item.value;
const measurement = MeasurementService.getMeasurement(annotationUID);
callInputDialog(
UIDialogService,
measurement,
(label, actionId) => {
if (actionId === 'cancel') {
return;
}
const updatedMeasurement = Object.assign({}, measurement, {
label,
});
MeasurementService.update(
updatedMeasurement.uid,
updatedMeasurement,
true
);
},
false
);
CONTEXT_MENU_OPEN = false;
},
},
});
};
const resetContextMenu = () => {
if (!UIDialogService) {
console.warn('Unable to show dialog; no UI Dialog Service available.');
return;
}
CONTEXT_MENU_OPEN = false;
UIDialogService.dismiss({ id: 'context-menu' });
};
// When a custom image load is performed, update the relevant viewports
HangingProtocolService.subscribe(
HangingProtocolService.EVENTS.CUSTOM_IMAGE_LOAD_PERFORMED,
volumeInputArrayMap => {
for (const entry of volumeInputArrayMap.entries()) {
const [viewportId, volumeInputArray] = entry;
const viewport = CornerstoneViewportService.getCornerstoneViewport(
viewportId
);
CornerstoneViewportService.setVolumesForViewport(
viewport,
volumeInputArray
);
}
}
);
/*
* Because click gives us the native "mouse up", buttons will always be `0`
* Need to fallback to event.which;
*
*/
const contextMenuHandleClick = evt => {
const mouseUpEvent = evt.detail.event;
const isRightClick = mouseUpEvent.which === 3;
const clickMethodHandler = isRightClick ? onRightClick : resetContextMenu;
clickMethodHandler(evt);
};
// const cancelContextMenuIfOpen = evt => {
// if (CONTEXT_MENU_OPEN) {
// resetContextMenu();
// }
// };
const newStackCallback = evt => {
const { element } = evt.detail;
utilities.stackPrefetch.enable(element);
};
const resetCrosshairs = evt => {
const { element } = evt.detail;
const { viewportId, renderingEngineId } = cornerstone.getEnabledElement(
element
);
const toolGroup = cornerstoneTools.ToolGroupManager.getToolGroupForViewport(
viewportId,
renderingEngineId
);
if (!toolGroup || !toolGroup._toolInstances?.['Crosshairs']) {
return;
}
const mode = toolGroup._toolInstances['Crosshairs'].mode;
if (mode === Enums.ToolModes.Active) {
toolGroup.setToolActive('Crosshairs');
} else if (mode === Enums.ToolModes.Passive) {
toolGroup.setToolPassive('Crosshairs');
} else if (mode === Enums.ToolModes.Enabled) {
toolGroup.setToolEnabled('Crosshairs');
}
};
function elementEnabledHandler(evt) {
const { element } = evt.detail;
element.addEventListener(
cs3DToolsEvents.MOUSE_CLICK,
contextMenuHandleClick
);
element.addEventListener(EVENTS.CAMERA_RESET, resetCrosshairs);
eventTarget.addEventListener(
EVENTS.STACK_VIEWPORT_NEW_STACK,
newStackCallback
);
}
function elementDisabledHandler(evt) {
const { element } = evt.detail;
element.removeEventListener(
cs3DToolsEvents.MOUSE_CLICK,
contextMenuHandleClick
);
element.removeEventListener(EVENTS.CAMERA_RESET, resetCrosshairs);
// TODO - consider removing the callback when all elements are gone
// eventTarget.removeEventListener(
// EVENTS.STACK_VIEWPORT_NEW_STACK,
// newStackCallback
// );
}
eventTarget.addEventListener(
EVENTS.ELEMENT_ENABLED,
elementEnabledHandler.bind(null)
);
eventTarget.addEventListener(
EVENTS.ELEMENT_DISABLED,
elementDisabledHandler.bind(null)
);
ViewportGridService.subscribe(
ViewportGridService.EVENTS.ACTIVE_VIEWPORT_INDEX_CHANGED,
({ viewportIndex }) => {
const viewportId = `viewport-${viewportIndex}`;
const toolGroup = ToolGroupService.getToolGroupForViewport(viewportId);
if (!toolGroup) {
return;
}
// check if reference lines are active
const referenceLinesEnabled =
toolGroup._toolInstances?.['ReferenceLines'].mode ===
Enums.ToolModes.Enabled;
if (!referenceLinesEnabled) {
return;
}
toolGroup.setToolConfiguration(
ReferenceLinesTool.toolName,
{
sourceViewportId: viewportId,
},
true // overwrite
);
// make sure to set it to enabled again since we want to recalculate
// the source-target lines
toolGroup.setToolEnabled(ReferenceLinesTool.toolName);
}
);
}
function CPUModal() {
return (
<div>
<p>
Your computer does not have enough GPU power to support the default GPU
rendering mode. OHIF has switched to CPU rendering mode. Please note
that CPU rendering does not support all features such as Volume
Rendering, Multiplanar Reconstruction, and Segmentation Overlays.
</p>
</div>
);
}
function _showCPURenderingModal(UIModalService, HangingProtocolService) {
const callback = progress => {
if (progress === 100) {
UIModalService.show({
content: CPUModal,
title: 'OHIF Fell Back to CPU Rendering',
});
return true;
}
};
const { unsubscribe } = HangingProtocolService.subscribe(
HangingProtocolService.EVENTS.HANGING_PROTOCOL_APPLIED_FOR_VIEWPORT,
({ progress }) => {
const done = callback(progress);
if (done) {
unsubscribe();
}
}
);
}