* Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Rebase on master. * format format format * add basic extension parts * Updated yarn lock * Fetch derived/referenced displaysets in sidepanel * Add buttons, expose seriesDescription, write notes for Danny. * Add growcut tool extention. -> Move to a seperate repo. * Change some text fields. * expose dialog provider * hide draggable area * No pointer events for now; need to revisit * Don't filter seg from the outset for now * fiddling about * fix path to series data * fix logic to determine next available labelmapindex * Ability to swtich between labelmaps * Return a promise so we can make sure our labelmap is loaded before pulling metadata * Better UI to toggle labelmaps * Fix accidental untoggle of active labelmap for ui * Remove brush tool from cornerstone extension * Add cstools in preInit for seg extension * Add buttons for seg magic * Hide the measurements panel for now * Slightly better seg/scissor icons * Add eraser * ability to switch segments * seg color / switcher * Fix vtk labelmap cache. * sidepanel should scroll if there's overflow * Use a fancier range slider * Slightly prettier buttons * Push in progress * A bit more reactive; handle no-meta * Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0 * chore: kickstart preview * Fix conflict issues * Refactor panel * Isolate increment functions * Wip segment table * Hide selector and add scroll to segmentation * Increase width of segment description * Hide not used items * Add new select for segmentations * Align ui * Fix default segmentation * Fix broken import test * Get measurements panel back and add spacing to grouped buttons * Hide brush and selector and refresh when switching segmentations * Add pointer events back and fix broken tests for measurement table * Update segment list when switching humbnails * CR Update: Minor UI adjustments * CR Update: Set active segment * Move components to components folder * Add new settings ui * Integrate configuration * Improve styles * Float numbers * Improve css * Refresh settings menu if side panel changed * Fix settings rendering logic and remove comments * Extract components * Remove not used tools * Remove non used extension * Use style variables and remove comments * Remove non used dep from lock * Remove tools * Remove segmentation from toolbar * Add todo and brushradius from config * Fix packagejson growcut import * Remove webpack config already defined in parent * Update package json description * Change component name to british english to us * Improve prop types * Rename cornerstone label map event * Scope css * Extract and add doc to helper * Update jsdocs for getDerivedDatasets * Add proptypes and cr updates * Update tablistitem proptypes * config is readonly, rollback destructuring * Remove event for side panel * Add jsdocs for util * Extract getimageid to studymetada * Use ohif log instead of console * Remove specific style from side panel * Fix default props for brush radius * Descructure configuration props from settings component to avoid invalid props * Update proptypes to be required (settings) * Update readme * Remove commandsmodule * Get configuration module inside the component * Set selected segment * Rename extension and use modality to filter * Fix for failing tests (#1423) * hello world * Finish rebase for Igor. * Re-fix cornerstoneTools version that got messed up in merge. * Fix reactivity of isDisabled, write implementation for the SEG panel. * Nuke yarn.lock to stack CST to 4.12.0 * Remove debugger statements. * fix: bump cornerstone-tools version to address toFixed issue * test: force tests for MISTER^MR to navigate to study directly * test: remove eraser tool test * test: count is off by one * test: don't save SR state for the time being * test: disable more tests Co-authored-by: James A. Petts <jamesapetts@gmail.com> Co-authored-by: dannyrb <danny.ri.brown@gmail.com> Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com> Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com> |
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OHIF Medical Imaging Viewer
The OHIF Viewer is a zero-footprint medical image viewer provided by the Open Health Imaging Foundation (OHIF). It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support DICOMweb.
About
The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.
Almost everything offers some degree of customization and configuration. If it doesn't support something you need, we accept pull requests and have an ever improving Extension System.
Why Choose Us
Community & Experience
The OHIF Viewer is a collaborative effort that has served as the basis for many active, production, and FDA Cleared medical imaging viewers. It benefits from our extensive community's collective experience, and from the sponsored contributions of individuals, research groups, and commercial organizations.
Built to Adapt
After more than 5-years of integrating with many companies and organizations, The OHIF Viewer has been rebuilt from the ground up to better address the varying workflow and configuration needs of its many users. All of the Viewer's core features are built using it's own extension system. The same extensibility that allows us to offer:
- 2D and 3D medical image viewing
- Multiplanar Reconstruction (MPR)
- Maximum Intensity Project (MIP)
- Whole slide microscopy viewing
- PDF and Dicom Structured Report rendering
- User Access Control (UAC)
- Context specific toolbar and side panel content
- and many others
Can be leveraged by you to customize the viewer for your workflow, and to add any new functionality you may need (and wish to maintain privately without forking).
Support
We offer support through GitHub Issues. You can:
For commercial support, academic collaberations, and answers to common questions; please read our documented FAQ.
Quick Start Deployment
This is only one of many ways to configure and deploy the OHIF Viewer. To learn more about your options, and how to choose the best one for your requirements, check out our deployment recipes and documentation.
The fastest and easiest way to get started is to include the OHIF Viewer with a script tag. In practice, this is as simple as:
- Including the following dependencies with script tags:
- Have an element with an ID of
rooton the page - Configure the OHIF Viewer at
window.config:
window.config = {
routerBasename: '/',
servers: {
dicomWeb: [
{
name: 'DCM4CHEE',
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
qidoSupportsIncludeField: true,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
},
],
},
};
- Install the viewer:
window.OHIFStandaloneViewer.installViewer(window.config);
This exact setup is demonstrated in this CodeSandbox and in our Embedding The Viewer deployment recipe.
Developing
Requirements
- Yarn 1.17.3+
- Node 10+
- Yarn Workspaces should be enabled on your machine:
yarn config set workspaces-experimental true
Getting Started
- Fork this repository
- Clone your forked repository
git clone https://github.com/YOUR-USERNAME/Viewers.git
- Navigate to the cloned project's directory
- Add this repo as a
remotenamedupstreamgit remote add upstream https://github.com/OHIF/Viewers.git
yarn installto restore dependencies and link projects
To Develop
From this repository's root directory:
# Enable Yarn Workspaces
yarn config set workspaces-experimental true
# Restore dependencies
yarn install
Commands
These commands are available from the root directory. Each project directory
also supports a number of commands that can be found in their respective
README.md and project.json files.
| Yarn Commands | Description |
|---|---|
| Develop | |
dev or start |
Default development experience for Viewer |
dev:project <package-name> |
Replace with core, ui, i18n, cornerstone, vtk, etc. |
test:unit |
Jest multi-project test runner; overall coverage |
| Deploy | |
build* |
Builds production output for our PWA Viewer |
build:package* |
Builds production commonjs output for our Viewer |
build:package-all* |
Builds commonjs bundles for all projects |
* - For more information on our different builds, check out our Deploy Docs
Projects
The OHIF Medical Image Viewing Platform is maintained as a
monorepo. This means that this repository, instead of containing a
single project, contains many projects. If you explore our project structure,
you'll see the following:
.
├── extensions #
│ ├── _example # Skeleton of example extension
│ ├── cornerstone # 2D images w/ Cornerstone.js
│ ├── dicom-html # Structured Reports as HTML in viewport
│ ├── dicom-microscopy # Whole slide microscopy viewing
│ ├── dicom-pdf # View DICOM wrapped PDFs in viewport
│ └── vtk # MPR and Volume support w/ VTK.js
│
├── platform #
│ ├── core # Business Logic
│ ├── i18n # Internationalization Support
│ ├── ui # React component library
│ └── viewer # Connects platform and extension projects
│
├── ... # misc. shared configuration
├── lerna.json # MonoRepo (Lerna) settings
├── package.json # Shared devDependencies and commands
└── README.md # This file
Want to better understand why and how we've structured this repository? Read more about it in our Architecture Documentation.
Platform
These projects comprise the
| Name | Description | Links |
|---|---|---|
| @ohif/core | Business logic and classes that model the data, services, and extensions that are framework agnostic | NPM |
| @ohif/i18n | Language files and small API for wrapping component/ui text for translations | NPM |
| @ohif/viewer | The OHIF Viewer. Where we consume and configure all platform library's and extensions | NPM |
| @ohif/ui | Reusable React components we consume and compose to build our Viewer's UI | NPM |
Extensions
This is a list of Extensions maintained by the OHIF Core team. It's possible to customize and configure these extensions, and you can even create your own. You can read more about extensions here.
| Name | Description | Links |
|---|---|---|
| @ohif/extension-cornestone | 2D image viewing, annotation, and segementation tools | NPM |
| @ohif/extension-dicom-html | Support for viewing DICOM SR as rendered HTML | NPM |
| @ohif/extension-dicom-microscopy | Whole slide microscopy viewing | NPM |
| @ohif/extension-dicom-pdf | View DICOM wrapped PDFs in a viewport | NPM |
| @ohif/extension-vtk | Volume rendering, reconstruction, and 3D visualizations | NPM |
Acknowledgments
To acknowledge the OHIF Viewer in an academic publication, please cite
LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer Imaging Research and Clinical Trials
Trinity Urban, Erik Ziegler, Rob Lewis, Chris Hafey, Cheryl Sadow, Annick D. Van den Abbeele and Gordon J. Harris
Cancer Research, November 1 2017 (77) (21) e119-e122 DOI: 10.1158/0008-5472.CAN-17-0334
Note: If you use or find this repository helpful, please take the time to star this repository on Github. This is an easy way for us to assess adoption and it can help us obtain future funding for the project.
This work is supported primarily by the National Institutes of Health, National Cancer Institute, Informatics Technology for Cancer Research (ITCR) program, under a grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460).
License
MIT © OHIF