Update to use beta 5.0 of CS3D (#5904)

* Update to use beta 5.0

* fix: unit tests

* fix: Allow slow server/test rendering to still work

* Update tests to use viewport grid compare

* Fix storage of stale retries actual/diff files

* cs3d linking fixees

* Linking for cs3d metadata

* Use metadata import for suv scaling

* Fix suv import

* Use type for import

* fix: Metadata registration ordering

* Use beta for upstream

* Merge from origin/master

* Revert tests to master

* Undo beta version changes

* Revert bun.lock file to that of master.

* Reduce test failure retries to one per test. Cap the number of failed total tests to 10. Replace the JSON reporter with the HTML reporter.

* Add generic provider back in

* Deprecate OHIF versions of cs3d utils

* fix

* Undo some cs3d beta dependencies so this PR could be merged

* Build fix

* Fixing build issues

* build issue

* bun lock

* Temporary cache clear to resolve build issue

* Cache bust

* Remove the babel hoist fix attempt

* Cache netlify toml issue

* Fix netlify cache issue

* Try to fix cache dependency issue

* Try update resolutions

* babel hoist fix

* fix: Remove netlify cache bust

* Revert pinned versions

* PR comments on duplicated suv-factors

* Undo lock changes and isEqual add

---------

Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>

.github/workflows/playwright.yml

@@ -122,7 +122,7 @@ jobs:
         run: |
           mkdir -p packaged-test-results
           cp -r ./tests/test-results packaged-test-results/ || true
-          cp ./tests/playwright-report.json packaged-test-results/ || true
+          cp -r ./tests/playwright-report packaged-test-results/ || true
       - name: Upload directory of test results artifact
         if: ${{ !cancelled() }}
         uses: actions/upload-artifact@v4

extensions/cornerstone/jest.config.js

@@ -5,8 +5,6 @@ module.exports = {
   moduleNameMapper: {
     ...base.moduleNameMapper,
     '@ohif/(.*)': '<rootDir>/../../platform/$1/src',
-    '^@cornerstonejs/([^/]+)/(.*)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm/$2',
-    '^@cornerstonejs/([^/]+)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm',
   },
   // rootDir: "../.."
   // testMatch: [

extensions/cornerstone/src/init.tsx

@@ -178,14 +178,6 @@ export default async function init({
     );
   });
 
-  // add metadata providers
-  metaData.addProvider(
-    csUtilities.calibratedPixelSpacingMetadataProvider.get.bind(
-      csUtilities.calibratedPixelSpacingMetadataProvider
-    )
-  ); // this provider is required for Calibration tool
-  metaData.addProvider(metadataProvider.get.bind(metadataProvider), 9999);
-
   // These are set reasonably low to allow for interleaved retrieves and slower
   // connections.
   imageLoadPoolManager.maxNumRequests = {
@@ -197,6 +189,16 @@ export default async function init({
 
   initWADOImageLoader(userAuthenticationService, appConfig, extensionManager);
 
+  // Add OHIF metadata providers after dicomImageLoader.init().
+  // The linked metadata branch clears providers during loader init.
+  metaData.addProvider(csUtilities.genericMetadataProvider.get, 9998);
+  metaData.addProvider(
+    csUtilities.calibratedPixelSpacingMetadataProvider.get.bind(
+      csUtilities.calibratedPixelSpacingMetadataProvider
+    )
+  ); // this provider is required for Calibration tool
+  metaData.addProvider(metadataProvider.get.bind(metadataProvider), 9999);
+
   /* Measurement Service */
   this.measurementServiceSource = connectToolsToMeasurementService({
     servicesManager,

extensions/default/jest.config.js

@@ -5,7 +5,6 @@ module.exports = {
   moduleNameMapper: {
     ...base.moduleNameMapper,
     '@ohif/(.*)': '<rootDir>/../../platform/$1/src',
-    '^@cornerstonejs/(.*)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm',
   },
   // rootDir: "../.."
   // testMatch: [

extensions/default/src/getPTImageIdInstanceMetadata.ts

@@ -1,6 +1,6 @@
 import OHIF from '@ohif/core';
 
-import { InstanceMetadata, PhilipsPETPrivateGroup } from '@cornerstonejs/calculate-suv/src/types';
+import type { InstanceMetadata, PhilipsPETPrivateGroup } from '@cornerstonejs/calculate-suv/src/types';
 
 const metadataProvider = OHIF.classes.MetadataProvider;
 

jest.config.base.js

@@ -18,6 +18,13 @@ module.exports = {
     '\\.(jpg|jpeg|png|gif|eot|otf|webp|svg|ttf|woff|woff2|mp4|webm|wav|mp3|m4a|aac|oga)$':
       '<rootDir>/src/__mocks__/fileMock.js',
     '\\.(css|less)$': 'identity-obj-proxy',
+    // calculate-suv publishes under dist/ (not dist/esm), so map it explicitly
+    // before package-specific catch-all @cornerstonejs mappings.
+    '^@cornerstonejs/calculate-suv$': '<rootDir>/../../node_modules/@cornerstonejs/calculate-suv',
+    '^@cornerstonejs/calculate-suv/(.*)$':
+      '<rootDir>/../../node_modules/@cornerstonejs/calculate-suv/$1',
+    '^@cornerstonejs/([^/]+)/(.*)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm/$2',
+    '^@cornerstonejs/([^/]+)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm',
   },
   // Setup
   // setupFiles: ["jest-canvas-mock/lib/index.js"],

platform/app/.webpack/webpack.pwa.js

@@ -14,6 +14,9 @@ const MiniCssExtractPlugin = require('mini-css-extract-plugin');
 const SRC_DIR = path.join(__dirname, '../src');
 const DIST_DIR = path.join(__dirname, '../dist');
 const PUBLIC_DIR = path.join(__dirname, '../public');
+
+// Ignore node_modules except @cornerstonejs (symlinked local development).
+const WATCH_IGNORED = /node_modules[\\/](?!@cornerstonejs(?:[\\/]|$))/;
 // ~~ Env Vars
 const HTML_TEMPLATE = process.env.HTML_TEMPLATE || 'index.html';
 const PUBLIC_URL = process.env.PUBLIC_URL || '/';
@@ -206,7 +209,8 @@ module.exports = (env, argv) => {
   }
 
   mergedConfig.watchOptions = {
-    ignored: /node_modules\/@cornerstonejs/,
+    ignored: WATCH_IGNORED,
+    followSymlinks: true,
   };
 
   return mergedConfig;

playwright.config.ts

@@ -4,17 +4,13 @@ export default defineConfig({
   testDir: './tests',
   fullyParallel: !!process.env.CI,
   forbidOnly: !!process.env.CI,
-  retries: process.env.CI ? 3 : 0,
+  retries: process.env.CI ? 1 : 0,
+  maxFailures: process.env.CI ? 10 : undefined,
   workers: process.env.CI ? 6 : undefined,
   snapshotPathTemplate: './tests/screenshots{/projectName}/{testFilePath}/{arg}{ext}',
   outputDir: './tests/test-results',
   reporter: [
-    [
-      process.env.CI ? 'json' : 'html',
-      process.env.CI
-        ? { outputFile: './tests/playwright-report.json' }
-        : { outputFolder: './tests/playwright-report' },
-    ],
+    ['html', { outputFolder: './tests/playwright-report' }],
   ],
   globalTimeout: 800_000,
   timeout: 800_000,

rsbuild.config.ts

@@ -27,7 +27,13 @@ const PROXY_PATH_REWRITE_TO = process.env.PROXY_PATH_REWRITE_TO;
 const OHIF_PORT = Number(process.env.OHIF_PORT || 3000);
 const OHIF_OPEN = process.env.OHIF_OPEN !== 'false';
 
+// Ignore node_modules except @cornerstonejs (symlinked local development).
+const WATCH_IGNORED = /node_modules[\\/](?!@cornerstonejs(?:[\\/]|$))/;
+
 export default defineConfig({
+  dev: {
+    lazyCompilation: false,
+  },
   source: {
     entry: {
       index: `${SRC_DIR}/index.js`,
@@ -83,7 +89,8 @@ export default defineConfig({
         },
       },
       watchOptions: {
-        ignored: /node_modules\/@cornerstonejs/,
+        ignored: WATCH_IGNORED,
+        followSymlinks: true,
       },
     },
   },