start cleaning up panels
This commit is contained in:
dannyrb
parent
d0c3fb6db0
commit
351e0f76d6
257
extensions/default/src/Panels/PanelStudyBrowser.jsx
Normal file
257
extensions/default/src/Panels/PanelStudyBrowser.jsx
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@ -0,0 +1,257 @@
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import React, { useState, useEffect, useCallback } from 'react';
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import PropTypes from 'prop-types';
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import { StudyBrowser } from '@ohif/ui';
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import { dicomMetadataStore, useViewModel } from '@ohif/core';
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function PanelStudyBrowser({ getDataSources, commandsManager }) {
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console.warn('StudyBrowserPanel rerender');
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const [activeTabName, setActiveTabName] = useState('primary');
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const [studyData, setStudyData] = useState([]);
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const [thumbnailImageSrcMap, setThumbnailImageSrcMap] = useState(new Map());
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const updateThumbnailMap = (k, v) => {
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setThumbnailImageSrcMap(thumbnailImageSrcMap.set(k, v));
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};
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const viewModel = useViewModel();
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const dataSource = getDataSources('dicomweb')[0];
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const viewportData = []; //useViewportGrid();
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const seriesTracking = {}; //useSeriesTracking();
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// This effect
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useEffect(() => {
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if (!viewModel.displaySetInstanceUIDs.length) {
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return;
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}
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let isSubscribed = true;
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const command = commandsManager.getCommand(
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'getCornerstoneLibraries',
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'VIEWER'
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);
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if (!command) {
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throw new Error('Required command not found');
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}
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const { cornerstone, cornerstoneTools } = command.commandFn();
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viewModel.displaySetInstanceUIDs.forEach(uid => {
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const imageIds = dataSource.getImageIdsForDisplaySet(uid);
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const imageId = imageIds[Math.floor(imageIds.length / 2)];
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getImageSrc(imageId, { cornerstone }).then(imageSrc => {
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if (isSubscribed) {
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updateThumbnailMap(uid, imageSrc);
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}
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});
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});
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const displaySets = viewModel.displaySetInstanceUIDs.map(
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displaySetManager.getDisplaySetByUID
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);
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const aDisplaySet = displaySets[0];
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const firstStudy = dicomMetadataStore.getStudy(
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aDisplaySet.StudyInstanceUID
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);
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const firstInstance = firstStudy.series[0].instances[0];
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const PatientID = firstInstance.PatientID;
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dataSource.query.studies.search({ patientId: PatientID }).then(results => {
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const studies = results.map(study => {
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// TODO: Why does the data source return in this format?
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return {
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AccessionNumber: study.accession,
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StudyDate: study.date,
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StudyDescription: study.description,
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NumInstances: study.instances,
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ModalitiesInStudy: study.modalities,
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PatientID: study.mrn,
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PatientName: study.patientName,
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StudyInstanceUID: study.studyInstanceUid,
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StudyTime: study.time,
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};
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});
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const studiesFromInstanceData = {};
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displaySets.forEach(ds => {
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const displaySet = {
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displaySetInstanceUID: ds.displaySetInstanceUID,
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description: ds.SeriesDescription,
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seriesNumber: ds.SeriesNumber,
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modality: ds.Modality,
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date: ds.SeriesDate,
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numInstances: ds.numImageFrames,
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};
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const displaySetViewportData = viewportData.find(
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a => a.displaySetInstanceUID === ds.displaySetInstanceUID
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);
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if (displaySetViewportData) {
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displaySet.viewportIdentificator = displaySetViewportData.identifier;
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}
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const trackingInfo = seriesTracking[ds.SeriesInstanceUID];
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if (trackingInfo) {
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displaySet.isTracked = trackingInfo.isTracked;
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} else {
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displaySet.isTracked = false;
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}
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displaySet.componentType = 'thumbnailTracked';
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if (
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!Object.keys(studiesFromInstanceData).includes(ds.StudyInstanceUID)
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) {
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const study = dicomMetadataStore.getStudy(ds.StudyInstanceUID);
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const anInstance = study.series[0].instances[0];
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studiesFromInstanceData[ds.StudyInstanceUID] = {
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date: anInstance.StudyDate, // TODO: Format this date to DD-MMM-YYYY
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description: anInstance.StudyDescription,
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displaySets: [],
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numInstances: 0,
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modalitiesSet: new Set(),
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};
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}
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studiesFromInstanceData[ds.StudyInstanceUID].displaySets.push(
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displaySet
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);
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studiesFromInstanceData[ds.StudyInstanceUID].numInstances +=
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displaySet.numInstances;
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studiesFromInstanceData[ds.StudyInstanceUID].modalitiesSet.add(
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displaySet.modality
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);
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const modalitiesSet =
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studiesFromInstanceData[ds.StudyInstanceUID].modalitiesSet;
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studiesFromInstanceData[ds.StudyInstanceUID].modalities = Array.from(
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modalitiesSet
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).join(', ');
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});
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// QIDO for all by MRN
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const allStudies = studies.map(studyLevelData => {
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const studyFromInstanceData =
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studiesFromInstanceData[studyLevelData.StudyInstanceUID];
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if (!studyFromInstanceData) {
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return {
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studyInstanceUid: studyLevelData.StudyInstanceUID,
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date: studyLevelData.StudyDate,
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description: studyLevelData.StudyDescription,
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modalities: studyLevelData.ModalitiesInStudy,
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numInstances: studyLevelData.NumInstances,
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displaySets: [],
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};
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}
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return {
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studyInstanceUid: studyLevelData.StudyInstanceUID,
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date: studyLevelData.StudyDate || studyFromInstanceData.date,
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description:
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studyLevelData.StudyDescription ||
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studyFromInstanceData.description,
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modalities:
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studyFromInstanceData.modalities ||
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studyLevelData.ModalitiesInStudy,
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numInstances:
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studyLevelData.NumInstances || studyFromInstanceData.numInstances,
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displaySets: studyFromInstanceData.displaySets,
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};
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});
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if (isSubscribed) {
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setStudyData(allStudies);
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}
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});
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return () => (isSubscribed = false);
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}, [viewModel.displaySetInstanceUIDs, thumbnailImageSrcMap, setStudyData]);
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studyData.forEach(study => {
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study.displaySets.forEach(ds => {
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ds.imageSrc = thumbnailImageSrcMap.get(ds.displaySetInstanceUID);
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});
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});
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const primary = studyData.find(study => {
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return true; // TODO: check study.StudyInstanceUID matches queryparam?
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});
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// TODO: Filter allStudies to dates within one year of current date
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const recentStudies = studyData.filter(study => {
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return true; // TODO: check study.date
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});
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const tabs = [
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{
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name: 'primary',
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label: 'Primary',
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studies: primary ? [primary] : [],
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},
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{
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name: 'recent',
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label: 'Recent',
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studies: recentStudies,
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},
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{
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name: 'all',
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label: 'All',
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studies: studyData,
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},
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];
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function onClickStudy(StudyInstanceUID) {
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const study = studyData.find(a => a.studyInstanceUid === StudyInstanceUID);
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if (study && study.displaySets && study.displaySets.length) {
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return;
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}
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console.warn(`onClickStudy: ${StudyInstanceUID}`);
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// TODO: This is weird, why can't the data source just be used as
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// as function that doesn't expect a query string?
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const queryParams = `?StudyInstanceUIDs=${StudyInstanceUID}`;
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dataSource.retrieve.series.metadata(
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queryParams,
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displaySetManager.makeDisplaySets
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);
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}
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const memoOnClickStudy = useCallback(
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StudyInstanceUID => {
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onClickStudy(StudyInstanceUID);
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},
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[studyData]
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);
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return (
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<StudyBrowser
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activeTabName={activeTabName}
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tabs={tabs}
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onClickStudy={memoOnClickStudy}
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onSetTabActive={setActiveTabName}
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/>
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);
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}
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function WrappedPanelStudyBrowser({ commandsManager, extensionManager }) {
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return (
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<PanelStudyBrowser
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getDataSources={extensionManager.getDataSources}
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commandsManager={commandsManager}
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/>
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);
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}
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WrappedPanelStudyBrowser.propTypes = {
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commandsManager: PropTypes.object.isRequired,
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extensionManager: PropTypes.object.isRequired,
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};
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export { WrappedPanelStudyBrowser };
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5
extensions/default/src/Panels/index.js
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5
extensions/default/src/Panels/index.js
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@ -0,0 +1,5 @@
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import PanelStudyBrowser, {
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WrappedPanelStudyBrowser,
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} from './PanelStudyBrowser';
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export { PanelStudyBrowser, WrappedPanelStudyBrowser };
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@ -1,6 +1,5 @@
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import React, { useState, useEffect, useCallback } from 'react';
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import { StudyBrowser } from '@ohif/ui';
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import { dicomMetadataStore, useViewModel, useToolbarLayout } from '@ohif/core';
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import React from 'react';
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import { WrappedPanelStudyBrowser } from './Panels'
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import MeasurementTable from './MeasurementTable.js';
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@ -23,281 +22,11 @@ function getImageSrc(imageId, { cornerstone }) {
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});
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}
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function StudyBrowserUIData({ getDataSources, commandsManager }) {
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const [activeTabName, setActiveTabName] = useState('primary');
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const [studyData, setStudyData] = useState([]);
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const [thumbnailImageSrcMap, setThumbnailImageSrcMap] = useState(new Map());
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const updateThumbnailMap = (k, v) => {
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setThumbnailImageSrcMap(thumbnailImageSrcMap.set(k, v));
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};
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console.log('StudyBrowserUIData rerender');
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return (
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<StudyBrowserPanel
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activeTabName={activeTabName}
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getDataSources={getDataSources}
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commandsManager={commandsManager}
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onSetTabActive={setActiveTabName}
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studyData={studyData}
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setStudyData={setStudyData}
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thumbnailImageSrcMap={thumbnailImageSrcMap}
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updateThumbnailMap={updateThumbnailMap}
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/>
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);
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}
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function StudyBrowserPanel({
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activeTabName,
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getDataSources,
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function getPanelModule({
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commandsManager,
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onSetTabActive,
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studyData,
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setStudyData,
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thumbnailImageSrcMap,
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updateThumbnailMap,
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extensionManager,
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servicesManager,
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}) {
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console.warn('StudyBrowserPanel rerender');
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const viewModel = useViewModel();
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const dataSource = getDataSources('dicomweb')[0];
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const viewportData = []; //useViewportGrid();
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const seriesTracking = {}; //useSeriesTracking();
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// This effect
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useEffect(() => {
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if (!viewModel.displaySetInstanceUIDs.length) {
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return;
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}
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let isSubscribed = true;
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const command = commandsManager.getCommand(
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'getCornerstoneLibraries',
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'VIEWER'
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);
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if (!command) {
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throw new Error('Required command not found');
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}
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const { cornerstone, cornerstoneTools } = command.commandFn();
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viewModel.displaySetInstanceUIDs.forEach(uid => {
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const imageIds = dataSource.getImageIdsForDisplaySet(uid);
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const imageId = imageIds[Math.floor(imageIds.length / 2)];
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getImageSrc(imageId, { cornerstone }).then(imageSrc => {
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if (isSubscribed) {
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updateThumbnailMap(uid, imageSrc);
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}
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});
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});
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const displaySets = viewModel.displaySetInstanceUIDs.map(
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displaySetManager.getDisplaySetByUID
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);
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const aDisplaySet = displaySets[0];
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const firstStudy = dicomMetadataStore.getStudy(
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aDisplaySet.StudyInstanceUID
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);
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const firstInstance = firstStudy.series[0].instances[0];
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const PatientID = firstInstance.PatientID;
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dataSource.query.studies.search({ patientId: PatientID }).then(results => {
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const studies = results.map(study => {
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// TODO: Why does the data source return in this format?
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return {
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AccessionNumber: study.accession,
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StudyDate: study.date,
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StudyDescription: study.description,
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NumInstances: study.instances,
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ModalitiesInStudy: study.modalities,
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PatientID: study.mrn,
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PatientName: study.patientName,
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StudyInstanceUID: study.studyInstanceUid,
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StudyTime: study.time,
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};
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});
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const studiesFromInstanceData = {};
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displaySets.forEach(ds => {
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const displaySet = {
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displaySetInstanceUID: ds.displaySetInstanceUID,
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description: ds.SeriesDescription,
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seriesNumber: ds.SeriesNumber,
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modality: ds.Modality,
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date: ds.SeriesDate,
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numInstances: ds.numImageFrames,
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};
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const displaySetViewportData = viewportData.find(
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a => a.displaySetInstanceUID === ds.displaySetInstanceUID
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);
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if (displaySetViewportData) {
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displaySet.viewportIdentificator = displaySetViewportData.identifier;
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}
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const trackingInfo = seriesTracking[ds.SeriesInstanceUID];
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if (trackingInfo) {
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displaySet.isTracked = trackingInfo.isTracked;
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} else {
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displaySet.isTracked = false;
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}
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displaySet.componentType = 'thumbnailTracked';
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if (
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!Object.keys(studiesFromInstanceData).includes(ds.StudyInstanceUID)
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) {
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const study = dicomMetadataStore.getStudy(ds.StudyInstanceUID);
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const anInstance = study.series[0].instances[0];
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studiesFromInstanceData[ds.StudyInstanceUID] = {
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date: anInstance.StudyDate, // TODO: Format this date to DD-MMM-YYYY
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description: anInstance.StudyDescription,
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displaySets: [],
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numInstances: 0,
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modalitiesSet: new Set(),
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};
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}
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studiesFromInstanceData[ds.StudyInstanceUID].displaySets.push(
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displaySet
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);
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studiesFromInstanceData[ds.StudyInstanceUID].numInstances +=
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displaySet.numInstances;
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studiesFromInstanceData[ds.StudyInstanceUID].modalitiesSet.add(
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displaySet.modality
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);
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const modalitiesSet =
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studiesFromInstanceData[ds.StudyInstanceUID].modalitiesSet;
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studiesFromInstanceData[ds.StudyInstanceUID].modalities = Array.from(
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modalitiesSet
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).join(', ');
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});
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// QIDO for all by MRN
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const allStudies = studies.map(studyLevelData => {
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const studyFromInstanceData =
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studiesFromInstanceData[studyLevelData.StudyInstanceUID];
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if (!studyFromInstanceData) {
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return {
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studyInstanceUid: studyLevelData.StudyInstanceUID,
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date: studyLevelData.StudyDate,
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description: studyLevelData.StudyDescription,
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modalities: studyLevelData.ModalitiesInStudy,
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numInstances: studyLevelData.NumInstances,
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displaySets: [],
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};
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}
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return {
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studyInstanceUid: studyLevelData.StudyInstanceUID,
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date: studyLevelData.StudyDate || studyFromInstanceData.date,
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description:
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studyLevelData.StudyDescription ||
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studyFromInstanceData.description,
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modalities:
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studyFromInstanceData.modalities ||
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studyLevelData.ModalitiesInStudy,
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numInstances:
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studyLevelData.NumInstances || studyFromInstanceData.numInstances,
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displaySets: studyFromInstanceData.displaySets,
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};
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});
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if (isSubscribed) {
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setStudyData(allStudies);
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}
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});
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return () => (isSubscribed = false);
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}, [viewModel.displaySetInstanceUIDs, thumbnailImageSrcMap, setStudyData]);
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studyData.forEach(study => {
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study.displaySets.forEach(ds => {
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ds.imageSrc = thumbnailImageSrcMap.get(ds.displaySetInstanceUID);
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});
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});
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const primary = studyData.find(study => {
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return true; // TODO: check study.StudyInstanceUID matches queryparam?
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});
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|
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// TODO: Filter allStudies to dates within one year of current date
|
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const recentStudies = studyData.filter(study => {
|
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return true; // TODO: check study.date
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});
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const tabs = [
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{
|
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name: 'primary',
|
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label: 'Primary',
|
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studies: primary ? [primary] : [],
|
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},
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{
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name: 'recent',
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label: 'Recent',
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studies: recentStudies,
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},
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{
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name: 'all',
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label: 'All',
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studies: studyData,
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},
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];
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function onClickStudy(StudyInstanceUID) {
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const study = studyData.find(a => a.studyInstanceUid === StudyInstanceUID);
|
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if (study && study.displaySets && study.displaySets.length) {
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return;
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}
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|
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console.warn(`onClickStudy: ${StudyInstanceUID}`);
|
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// TODO: This is weird, why can't the data source just be used as
|
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// as function that doesn't expect a query string?
|
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const queryParams = `?StudyInstanceUIDs=${StudyInstanceUID}`;
|
||||
|
||||
dataSource.retrieve.series.metadata(
|
||||
queryParams,
|
||||
displaySetManager.makeDisplaySets
|
||||
);
|
||||
}
|
||||
|
||||
const memoOnClickStudy = useCallback(
|
||||
StudyInstanceUID => {
|
||||
onClickStudy(StudyInstanceUID);
|
||||
},
|
||||
[studyData]
|
||||
);
|
||||
|
||||
return (
|
||||
<StudyBrowser
|
||||
activeTabName={activeTabName}
|
||||
tabs={tabs}
|
||||
onClickStudy={memoOnClickStudy}
|
||||
onSetTabActive={onSetTabActive}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
function getPanelModule({ getDataSources, commandsManager, servicesManager }) {
|
||||
const wrappedStudyBrowserPanel = () => {
|
||||
return (
|
||||
<StudyBrowserUIData
|
||||
getDataSources={getDataSources}
|
||||
commandsManager={commandsManager}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
const wrappedMeasurementPanel = () => {
|
||||
return (
|
||||
<MeasurementTable
|
||||
@ -313,7 +42,10 @@ function getPanelModule({ getDataSources, commandsManager, servicesManager }) {
|
||||
iconName: 'group-layers',
|
||||
iconLabel: 'Studies',
|
||||
label: 'Studies',
|
||||
component: wrappedStudyBrowserPanel,
|
||||
component: WrappedPanelStudyBrowser.bind(null, {
|
||||
commandsManager,
|
||||
extensionManager,
|
||||
}),
|
||||
},
|
||||
{
|
||||
name: 'measure',
|
||||
@ -326,3 +58,36 @@ function getPanelModule({ getDataSources, commandsManager, servicesManager }) {
|
||||
}
|
||||
|
||||
export default getPanelModule;
|
||||
|
||||
|
||||
// // TODO -> Need some way of selecting which displaySets hit the viewports.
|
||||
// const { DisplaySetService } = servicesManager.services;
|
||||
|
||||
// // TODO -> Make a HangingProtocolService
|
||||
// const HangingProtocolService = displaySets => {
|
||||
// const displaySetInstanceUid = displaySets[Object.keys(displaySets)[0]][0].displaySetInstanceUid;
|
||||
|
||||
// return {
|
||||
// numRows: 1,
|
||||
// numCols: 1,
|
||||
// activeViewportIndex: 0,
|
||||
// viewports: [
|
||||
// {
|
||||
// displaySetInstanceUid,
|
||||
// },
|
||||
// ],
|
||||
// };
|
||||
// };
|
||||
|
||||
// const handleDisplaySetSubscription = useCallback(displaySets => {
|
||||
// setViewportGrid(HangingProtocolService(displaySets));
|
||||
// });
|
||||
|
||||
// useEffect(() => {
|
||||
// const { unsubscribe } = DisplaySetService.subscribe(
|
||||
// DisplaySetService.EVENTS.DISPLAY_SET_ADDED,
|
||||
// handleDisplaySetSubscription
|
||||
// );
|
||||
|
||||
// return unsubscribe;
|
||||
// }, []);
|
||||
|
||||
@ -24,11 +24,8 @@ import { ViewModelProvider } from '@ohif/core';
|
||||
*/
|
||||
export default function buildModeRoutes(
|
||||
modes,
|
||||
|
||||
dataSources,
|
||||
|
||||
extensionManager,
|
||||
|
||||
servicesManager
|
||||
) {
|
||||
const routes = [];
|
||||
|
||||
Loading…
Reference in New Issue
Block a user