fix(microscopy): Update microscope to 0.48.17 to fix a measurement exception. (#5710)
* Added documentation for locally linking dicom-microscopy-viewer.
This commit is contained in:
Joe Boccanfuso
GitHub
parent
c2efa5701e
commit
4a1f509865
@ -4,6 +4,6 @@
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"version": "3.12.0-beta.123",
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"license": "MIT",
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"dependencies": {
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"dicom-microscopy-viewer": "0.48.6"
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"dicom-microscopy-viewer": "0.48.17"
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}
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}
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94
bun.lock
94
bun.lock
@ -52,7 +52,7 @@
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},
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"addOns/externals/devDependencies": {
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"name": "@externals/devDependencies",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@kitware/vtk.js": "34.15.1",
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@ -137,14 +137,14 @@
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},
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"addOns/externals/dicom-microscopy-viewer": {
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"name": "@externals/dicom-microscopy-viewer",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"dicom-microscopy-viewer": "0.48.6",
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"dicom-microscopy-viewer": "0.48.17",
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},
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},
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"extensions/cornerstone": {
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"name": "@ohif/extension-cornerstone",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/adapters": "4.15.9",
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@ -170,8 +170,8 @@
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"@cornerstonejs/codec-openjpeg": "1.3.0",
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"@cornerstonejs/codec-openjph": "2.4.7",
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"@cornerstonejs/dicom-image-loader": "4.15.9",
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"@ohif/core": "3.12.0-beta.122",
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"@ohif/ui": "3.12.0-beta.122",
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"@ohif/core": "3.12.0-beta.123",
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"@ohif/ui": "3.12.0-beta.123",
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"dcmjs": "0.45.0",
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"dicom-parser": "1.8.21",
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"hammerjs": "2.0.8",
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@ -183,7 +183,7 @@
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},
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"extensions/cornerstone-dicom-pmap": {
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"name": "@ohif/extension-cornerstone-dicom-pmap",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/adapters": "4.15.9",
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@ -206,7 +206,7 @@
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},
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"extensions/cornerstone-dicom-rt": {
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"name": "@ohif/extension-cornerstone-dicom-rt",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"react-color": "2.19.3",
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@ -226,7 +226,7 @@
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},
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"extensions/cornerstone-dicom-seg": {
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"name": "@ohif/extension-cornerstone-dicom-seg",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/adapters": "4.15.9",
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@ -249,7 +249,7 @@
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},
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"extensions/cornerstone-dicom-sr": {
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"name": "@ohif/extension-cornerstone-dicom-sr",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/adapters": "4.15.9",
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@ -258,10 +258,10 @@
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"classnames": "2.5.1",
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},
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"peerDependencies": {
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"@ohif/core": "3.12.0-beta.122",
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"@ohif/extension-cornerstone": "3.12.0-beta.122",
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"@ohif/extension-measurement-tracking": "3.12.0-beta.122",
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"@ohif/ui": "3.12.0-beta.122",
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"@ohif/core": "3.12.0-beta.123",
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"@ohif/extension-cornerstone": "3.12.0-beta.123",
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"@ohif/extension-measurement-tracking": "3.12.0-beta.123",
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"@ohif/ui": "3.12.0-beta.123",
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"dcmjs": "0.45.0",
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"dicom-parser": "1.8.21",
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"hammerjs": "2.0.8",
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@ -271,7 +271,7 @@
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},
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"extensions/cornerstone-dynamic-volume": {
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"name": "@ohif/extension-cornerstone-dynamic-volume",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/core": "4.15.9",
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@ -293,7 +293,7 @@
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},
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"extensions/default": {
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"name": "@ohif/extension-default",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/calculate-suv": "1.1.0",
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@ -301,8 +301,8 @@
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"lodash.uniqby": "4.7.0",
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},
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"peerDependencies": {
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"@ohif/core": "3.12.0-beta.122",
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"@ohif/i18n": "3.12.0-beta.122",
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"@ohif/core": "3.12.0-beta.123",
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"@ohif/i18n": "3.12.0-beta.123",
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"dcmjs": "0.45.0",
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"dicomweb-client": "0.10.4",
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"prop-types": "15.8.1",
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@ -316,7 +316,7 @@
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},
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"extensions/dicom-microscopy": {
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"name": "@ohif/extension-dicom-microscopy",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/codec-charls": "1.2.3",
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@ -341,7 +341,7 @@
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},
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"extensions/dicom-pdf": {
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"name": "@ohif/extension-dicom-pdf",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"classnames": "2.5.1",
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@ -358,7 +358,7 @@
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},
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"extensions/dicom-video": {
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"name": "@ohif/extension-dicom-video",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"classnames": "2.5.1",
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@ -375,20 +375,20 @@
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},
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"extensions/measurement-tracking": {
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"name": "@ohif/extension-measurement-tracking",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@ohif/ui": "3.12.0-beta.122",
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"@ohif/ui": "3.12.0-beta.123",
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"@xstate/react": "3.2.2",
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"xstate": "4.38.3",
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},
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"peerDependencies": {
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"@cornerstonejs/core": "4.15.9",
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"@cornerstonejs/tools": "4.15.9",
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"@ohif/core": "3.12.0-beta.122",
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"@ohif/extension-cornerstone-dicom-sr": "3.12.0-beta.122",
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"@ohif/extension-default": "3.12.0-beta.122",
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"@ohif/ui": "3.12.0-beta.122",
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"@ohif/core": "3.12.0-beta.123",
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"@ohif/extension-cornerstone-dicom-sr": "3.12.0-beta.123",
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"@ohif/extension-default": "3.12.0-beta.123",
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"@ohif/ui": "3.12.0-beta.123",
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"classnames": "2.5.1",
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"dcmjs": "0.45.0",
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"lodash.debounce": "4.0.8",
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@ -401,7 +401,7 @@
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},
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"extensions/test-extension": {
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"name": "@ohif/extension-test",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"classnames": "2.5.1",
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@ -418,7 +418,7 @@
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},
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"extensions/tmtv": {
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"name": "@ohif/extension-tmtv",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"classnames": "2.5.1",
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@ -435,7 +435,7 @@
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},
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"extensions/usAnnotation": {
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"name": "@ohif/extension-ultrasound-pleura-bline",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/core": "4.15.9",
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@ -487,7 +487,7 @@
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},
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"modes/basic": {
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"name": "@ohif/mode-basic",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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},
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@ -508,7 +508,7 @@
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},
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"modes/basic-dev-mode": {
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"name": "@ohif/mode-basic-dev-mode",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next": "17.3.1",
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@ -528,7 +528,7 @@
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},
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"modes/basic-test-mode": {
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"name": "@ohif/mode-test",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next": "17.3.1",
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@ -550,7 +550,7 @@
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},
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"modes/longitudinal": {
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"name": "@ohif/mode-longitudinal",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next": "17.3.1",
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@ -574,7 +574,7 @@
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},
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"modes/microscopy": {
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"name": "@ohif/mode-microscopy",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next": "17.3.1",
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@ -586,7 +586,7 @@
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},
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"modes/preclinical-4d": {
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"name": "@ohif/mode-preclinical-4d",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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},
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@ -605,7 +605,7 @@
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},
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"modes/segmentation": {
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"name": "@ohif/mode-segmentation",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next": "17.3.1",
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@ -650,7 +650,7 @@
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},
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"modes/tmtv": {
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"name": "@ohif/mode-tmtv",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next": "17.3.1",
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@ -671,7 +671,7 @@
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},
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"modes/usAnnotation": {
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"name": "@ohif/mode-ultrasound-pleura-bline",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/core": "4.15.9",
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@ -710,7 +710,7 @@
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},
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"platform/app": {
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"name": "@ohif/app",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"@cornerstonejs/codec-charls": "1.2.3",
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@ -789,7 +789,7 @@
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},
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"platform/cli": {
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"name": "@ohif/cli",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"bin": {
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"ohif-cli": "src/index.js",
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},
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@ -813,7 +813,7 @@
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},
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"platform/core": {
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"name": "@ohif/core",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"dcmjs": "0.45.0",
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@ -840,14 +840,14 @@
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"@cornerstonejs/codec-openjph": "2.4.7",
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"@cornerstonejs/core": "4.15.9",
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"@cornerstonejs/dicom-image-loader": "4.15.9",
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"@ohif/ui": "3.12.0-beta.122",
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"@ohif/ui": "3.12.0-beta.123",
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"cornerstone-math": "0.1.9",
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"dicom-parser": "1.8.21",
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},
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},
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"platform/i18n": {
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"name": "@ohif/i18n",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@babel/runtime": "7.28.2",
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"i18next-locize-backend": "2.2.2",
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},
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"platform/ui": {
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"name": "@ohif/ui",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@testing-library/react": "13.4.0",
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"browser-detect": "0.2.28",
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@ -923,7 +923,7 @@
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},
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"platform/ui-next": {
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"name": "@ohif/ui-next",
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"version": "3.12.0-beta.122",
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"version": "3.12.0-beta.123",
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"dependencies": {
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"@radix-ui/react-accordion": "1.2.11",
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"@radix-ui/react-checkbox": "1.3.2",
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@ -2768,7 +2768,7 @@
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"detective": ["detective@5.2.1", "", { "dependencies": { "acorn-node": "^1.8.2", "defined": "^1.0.0", "minimist": "^1.2.6" }, "bin": { "detective": "bin/detective.js" } }, "sha512-v9XE1zRnz1wRtgurGu0Bs8uHKFSTdteYZNbIPFVhUZ39L/S79ppMpdmVOZAnoz1jfEFodc48n6MX483Xo3t1yw=="],
|
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"dicom-microscopy-viewer": ["dicom-microscopy-viewer@0.48.6", "", { "dependencies": { "@cornerstonejs/codec-charls": "^1.2.3", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.4", "@cornerstonejs/codec-openjph": "^2.4.5", "colormap": "^2.3", "dcmjs": "^0.41.0", "dicomicc": "^0.1", "dicomweb-client": "^0.10.3", "image-type": "^4.1", "mathjs": "^11.2", "ol": "^10.4.0", "uuid": "^9.0" } }, "sha512-cTQ14qE3zqzlH0QOIhxbrIOsLVNCV6/i9qDrIiOnmD3I1R2W6cwRN4iMgQ0c6zas/9+o645Tu37FA6BqQ3fIlg=="],
|
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"dicom-microscopy-viewer": ["dicom-microscopy-viewer@0.48.17", "", { "dependencies": { "@cornerstonejs/codec-charls": "^1.2.3", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.4", "@cornerstonejs/codec-openjph": "^2.4.5", "colormap": "^2.3", "dcmjs": "^0.41.0", "dicomicc": "^0.1", "dicomweb-client": "^0.10.3", "image-type": "^4.1", "mathjs": "^11.2", "ol": "^10.6.0", "uuid": "^9.0" } }, "sha512-lzl9wXSg5skCp93kUj+VFFydt1wSgVFIrNw/BeUsP+Im+csUukPE0l1KJPC3xbJNAfyqTCU1PZ3aYSEdVD7aCg=="],
|
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"dicom-parser": ["dicom-parser@1.8.21", "", {}, "sha512-lYCweHQDsC8UFpXErPlg86Px2A8bay0HiUY+wzoG3xv5GzgqVHU3lziwSc/Gzn7VV7y2KeP072SzCviuOoU02w=="],
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@ -19,10 +19,12 @@ code linking and execution. The method to link locally using `bun` differs sligh
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:::tip
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Linking locally with `bun` provides for running the [playwright tests](./playwright-testing.md) locally so as to include (and test) local changes from Cornerstone3D!
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||||
Linking locally with `bun` provides for running the [playwright tests](./playwright-testing.md) locally so as to include (and test) local changes from Cornerstone3D and other libraries like dicom-microscopy-viewer.
|
||||
|
||||
:::
|
||||
|
||||
### Linking Cornerstone3D
|
||||
|
||||
In the local Cornerstone3D, simply replace `yarn` with `bun` for each of the commands. For example, in `cornerstone/packages/core` the following would be done.
|
||||
|
||||
```
|
||||
@ -49,4 +51,29 @@ cornerstone packages to link locally in the `resolutions`.
|
||||
...
|
||||
```
|
||||
|
||||
In OHIF, run `bun install -f` and then run OHIF using either `bun dev` or `bun dev:fast`.
|
||||
In OHIF, run `bun install -f --config=.\bunfig.update-lockfile.toml` and then run OHIF using either `bun dev` or `bun dev:fast`.
|
||||
|
||||
### Linking dicom-microscopy-viewer
|
||||
|
||||
The process for linking other libraries such as the dicom-microscopy-viewer is similar to that of linking Cornerstone3D.
|
||||
|
||||
```
|
||||
# In the local dicom-microscopy-viewer directory
|
||||
bun unlink
|
||||
bun link
|
||||
bun webpack:dynamic-import:watch
|
||||
```
|
||||
In OHIF, edit the root `package.json` file to include the dicom-microscopy-viewer package in the `resolutions`. The following is an example of this...
|
||||
|
||||
```
|
||||
...
|
||||
"resolutions": {
|
||||
"commander": "8.3.0",
|
||||
"path-to-regexp": "0.1.12",
|
||||
"dicom-microscopy-viewer": "link:dicom-microscopy-viewer",
|
||||
...
|
||||
},
|
||||
...
|
||||
```
|
||||
|
||||
In OHIF, run `bun install -f --config=.\bunfig.update-lockfile.toml` and then run OHIF using either `bun dev` or `bun dev:fast`.
|
||||
|
||||
18
yarn.lock
18
yarn.lock
@ -7530,10 +7530,10 @@ detective@^5.2.1:
|
||||
defined "^1.0.0"
|
||||
minimist "^1.2.6"
|
||||
|
||||
dicom-microscopy-viewer@0.48.6:
|
||||
version "0.48.6"
|
||||
resolved "https://registry.yarnpkg.com/dicom-microscopy-viewer/-/dicom-microscopy-viewer-0.48.6.tgz#dc9e8f7bb86c8aabf6b24d96a46be3a9f5f4f7f1"
|
||||
integrity sha512-cTQ14qE3zqzlH0QOIhxbrIOsLVNCV6/i9qDrIiOnmD3I1R2W6cwRN4iMgQ0c6zas/9+o645Tu37FA6BqQ3fIlg==
|
||||
dicom-microscopy-viewer@0.48.17:
|
||||
version "0.48.17"
|
||||
resolved "https://registry.yarnpkg.com/dicom-microscopy-viewer/-/dicom-microscopy-viewer-0.48.17.tgz#7e2c9764a13a729f56076b2255c90939b170ac38"
|
||||
integrity sha512-lzl9wXSg5skCp93kUj+VFFydt1wSgVFIrNw/BeUsP+Im+csUukPE0l1KJPC3xbJNAfyqTCU1PZ3aYSEdVD7aCg==
|
||||
dependencies:
|
||||
"@cornerstonejs/codec-charls" "^1.2.3"
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit" "^1.2.2"
|
||||
@ -7545,7 +7545,7 @@ dicom-microscopy-viewer@0.48.6:
|
||||
dicomweb-client "^0.10.3"
|
||||
image-type "^4.1"
|
||||
mathjs "^11.2"
|
||||
ol "^10.4.0"
|
||||
ol "^10.6.0"
|
||||
uuid "^9.0"
|
||||
|
||||
dicom-parser@1.8.21:
|
||||
@ -13867,10 +13867,10 @@ oidc-client@1.11.5:
|
||||
crypto-js "^4.0.0"
|
||||
serialize-javascript "^4.0.0"
|
||||
|
||||
ol@^10.4.0:
|
||||
version "10.6.1"
|
||||
resolved "https://registry.yarnpkg.com/ol/-/ol-10.6.1.tgz#950f3914b4eec978f087b36aa74ce1e18c41ab09"
|
||||
integrity sha512-xp174YOwPeLj7c7/8TCIEHQ4d41tgTDDhdv6SqNdySsql5/MaFJEJkjlsYcvOPt7xA6vrum/QG4UdJ0iCGT1cg==
|
||||
ol@^10.6.0:
|
||||
version "10.7.0"
|
||||
resolved "https://registry.yarnpkg.com/ol/-/ol-10.7.0.tgz#6a072a602cab3a5d9b35356de8b837221d78379b"
|
||||
integrity sha512-122U5gamPqNgLpLOkogFJhgpywvd/5en2kETIDW+Ubfi9lPnZ0G9HWRdG+CX0oP8od2d6u6ky3eewIYYlrVczw==
|
||||
dependencies:
|
||||
"@types/rbush" "4.0.0"
|
||||
earcut "^3.0.0"
|
||||
|
||||
Loading…
Reference in New Issue
Block a user