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fix(local): fix modalities not showing in local (#3388)

Browse Source 
* fix various bugs

* revert back docusaurus for styling issues
This commit is contained in:
Alireza 2023-05-12 15:04:19 -04:00 committed by GitHub
parent 84cb709b44
commit 4fd81b5cd2
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GPG Key ID: 4AEE18F83AFDEB23
8 changed files with 271 additions and 256 deletions
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5
DATACITATION.md
View File

@ -142,3 +142,8 @@ National Lung Screening Trial
Stony Brook University COVID-19 Positive Cases (COVID-19-NY-SBU)
- Saltz, J., Saltz, M., Prasanna, P., Moffitt, R., Hajagos, J., Bremer, E., Balsamo, J., & Kurc, T. (2021). Stony Brook University COVID-19 Positive Cases [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.BBAG-2923
### 2.16.840.1.114362.1.11972228.22789312658.616067305.306.2
https://data.kitware.com/

10
extensions/cornerstone-dicom-sr/src/getSopClassHandlerModule.ts
View File

@ -133,9 +133,13 @@ function _getDisplaySetsFromSeries(
ConceptNameCodeSequence.CodeValue !==
CodeNameCodeSequenceValues.ImagingMeasurementReport
) {
console.log(
'Only support Imaging Measurement Report SRs (TID1500) for this renderer.'
);
servicesManager.services.uiNotificationService.show({
title: 'DICOM SR',
message:
'OHIF only supports TID1500 Imaging Measurement Report Structured Reports. The SR you’re trying to view is not supported.',
type: 'warning',
duration: 6000,
});
return [];
}

8
extensions/cornerstone/src/services/SegmentationService/SegmentationService.ts
View File

@ -996,10 +996,16 @@ class SegmentationService extends PubSubService {
label: string;
}
): Promise<string> => {
const { displaySetService } = this.servicesManager.services;
const displaySet = displaySetService.getDisplaySetByUID(
displaySetInstanceUID
);
// Todo: we currently only support labelmap for segmentation for a displaySet
const representationType = LABELMAP;
const volumeId = this._getVolumeIdForDisplaySet(displaySetInstanceUID);
const volumeId = this._getVolumeIdForDisplaySet(displaySet);
const segmentationId = options?.segmentationId ?? `${csUtils.uuidv4()}`;

2
extensions/default/src/DicomLocalDataSource/index.js
View File

@ -75,7 +75,7 @@ function createDicomLocalApi(dicomLocalConfig) {
const study = DicomMetadataStore.getStudy(StudyInstanceUID);
study.series.forEach(aSeries => {
numInstances += aSeries.instances.length;
modalities.add(aSeries.Modality);
modalities.add(aSeries.instances[0].Modality);
});
// first instance in the first series

3
extensions/tmtv/src/Panels/PanelROIThresholdSegmentation/segmentationEditHandler.tsx
View File

@ -14,7 +14,8 @@ function segmentationItemEditHandler({ id, servicesManager }) {
...segmentation,
...value,
},
true
false, // don't suppress event
true // it should update cornerstone
);
}
}

16
platform/docs/package.json
View File

@ -27,14 +27,14 @@
"write-heading-ids": "docusaurus write-heading-ids"
},
"dependencies": {
"@docusaurus/core": "2.4.0",
"@docusaurus/plugin-client-redirects": "2.4.0",
"@docusaurus/plugin-ideal-image": "2.4.0",
"@docusaurus/plugin-pwa": "2.4.0",
"@docusaurus/preset-classic": "2.4.0",
"@docusaurus/remark-plugin-npm2yarn": "2.4.0",
"@docusaurus/theme-live-codeblock": "2.4.0",
"@docusaurus/plugin-google-gtag": "2.4.0",
"@docusaurus/core": "2.3.0",
"@docusaurus/plugin-client-redirects": "2.3.0",
"@docusaurus/plugin-ideal-image": "2.3.0",
"@docusaurus/plugin-pwa": "2.3.0",
"@docusaurus/preset-classic": "2.3.0",
"@docusaurus/remark-plugin-npm2yarn": "2.3.0",
"@docusaurus/theme-live-codeblock": "2.3.0",
"@docusaurus/plugin-google-gtag": "2.3.0",
"@mdx-js/react": "^1.6.21",
"@svgr/webpack": "^5.5.0",
"classnames": "^2.3.2",

4
platform/ui/src/components/SegmentationTable/SegmentationItem.tsx
View File

@ -71,8 +71,8 @@ const SegmentationItem = ({
)}
</div>
<div className="relative flex flex-col w-full p-1">
<div className="flex items-center mb-1 ml-2">
<div className="flex items-center flex-1 text-base text-primary-light">
<div className="flex items-center ml-2">
<div className="flex flex-1 text-base text-primary-light">
<div
className="w-3 h-3 mt-1 mr-2 rounded-full"
style={{ backgroundColor: 'red' }}

479
yarn.lock
View File

@ -1667,10 +1667,10 @@
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algoliasearch "^4.0.0"
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dependencies:
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@ -1682,13 +1682,13 @@
"@babel/runtime" "^7.18.6"
"@babel/runtime-corejs3" "^7.18.6"
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"@docusaurus/cssnano-preset" "2.4.0"
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"@slorber/static-site-generator-webpack-plugin" "^4.0.7"
"@svgr/webpack" "^6.2.1"
autoprefixer "^10.4.7"
@ -1709,7 +1709,7 @@
del "^6.1.1"
detect-port "^1.3.0"
escape-html "^1.0.3"
eta "^2.0.0"
eta "^1.12.3"
file-loader "^6.2.0"
fs-extra "^10.1.0"
html-minifier-terser "^6.1.0"
@ -1744,44 +1744,44 @@
webpack-merge "^5.8.0"
webpackbar "^5.0.2"
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resolved "https://registry.yarnpkg.com/@docusaurus/cssnano-preset/-/cssnano-preset-2.4.0.tgz#9213586358e0cce517f614af041eb7d184f8add6"
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postcss "^8.4.14"
postcss-sort-media-queries "^4.2.1"
tslib "^2.4.0"
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lodash "^4.17.21"
sharp "^0.30.7"
tslib "^2.4.0"
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resolved "https://registry.npmjs.org/@docusaurus/mdx-loader/-/mdx-loader-2.3.0.tgz#47df9b18e47b97f5a54f9187471d643891338e9c"
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"@docusaurus/utils" "2.3.0"
"@mdx-js/mdx" "^1.6.22"
escape-html "^1.0.3"
file-loader "^6.2.0"
@ -1796,13 +1796,13 @@
url-loader "^4.1.1"
webpack "^5.73.0"
"@docusaurus/module-type-aliases@2.4.0":
version "2.4.0"
resolved "https://registry.yarnpkg.com/@docusaurus/module-type-aliases/-/module-type-aliases-2.4.0.tgz#6961605d20cd46f86163ed8c2d83d438b02b4028"
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resolved "https://registry.npmjs.org/@docusaurus/module-type-aliases/-/module-type-aliases-2.3.0.tgz#85861b0e56a3468d82cba76964e08287d1939c84"
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"@types/history" "^4.7.11"
"@types/react" "*"
"@types/react-router-config" "*"
@ -1810,33 +1810,33 @@
react-helmet-async "*"
react-loadable "npm:@docusaurus/react-loadable@5.5.2"
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version "2.4.0"
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cheerio "^1.0.0-rc.12"
feed "^4.2.2"
fs-extra "^10.1.0"
@ -1847,18 +1847,18 @@
utility-types "^3.10.0"
webpack "^5.73.0"
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@ -1869,92 +1869,92 @@
utility-types "^3.10.0"
webpack "^5.73.0"
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