Upgrade to cornerstoneTools 4.0.1 and dcmjs 0.6.0

extensions/cornerstone/package.json

@@ -32,9 +32,9 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.2.8",
     "cornerstone-math": "^0.1.8",
-    "cornerstone-tools": "^3.1.0",
+    "cornerstone-tools": "^4.0.1",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.3.8",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",

extensions/cornerstone/src/handleSegmentationStorage.js

@@ -1,8 +1,8 @@
-import * as dcmjs from "dcmjs";
+import * as dcmjs from 'dcmjs';
 
-import OHIF from "@ohif/core";
-import cornerstone from "cornerstone-core";
-import cornerstoneTools from "cornerstone-tools";
+import OHIF from '@ohif/core';
+import cornerstone from 'cornerstone-core';
+import cornerstoneTools from 'cornerstone-tools';
 
 const { StackManager } = OHIF.utils;
 
@@ -56,7 +56,7 @@ function retrieveDicomData(wadoUri) {
   // TODO: Authorization header depends on the server. If we ever have multiple servers
   // we will need to figure out how / when to pass this information in.
   return fetch(wadoUri, {
-    headers: OHIF.DICOMWeb.getAuthorizationHeader()
+    headers: OHIF.DICOMWeb.getAuthorizationHeader(),
   }).then(response => response.arrayBuffer());
 }
 
@@ -91,7 +91,7 @@ async function handleSegmentationStorage(
 
   if (displaySets.length > 1) {
     console.warn(
-      "More than one display set with the same seriesInstanceUid. This is not supported yet..."
+      'More than one display set with the same seriesInstanceUid. This is not supported yet...'
     );
   }
 
@@ -100,17 +100,20 @@ async function handleSegmentationStorage(
   const results = parseSeg(arrayBuffer, imageIds);
 
   if (!results) {
-    throw new Error("Fractional segmentations are not supported");
+    throw new Error('Fractional segmentations are not supported');
   }
 
-  const { segMetadata, toolState } = results;
+  const { labelmapBuffer, segMetadata, segmentsOnFrame } = results;
 
-  segMetadata.seriesInstanceUid = seriesInstanceUid;
+  const { setters } = cornerstoneTools.getModule('segmentation');
 
-  addSegMetadataToCornerstoneToolState(
+  setters.labelmap3DByFirstImageId(
+    imageIds[0],
+    labelmapBuffer,
+    0, // TODO -> Can define a color LUT based on colors in the SEG later.
     segMetadata,
-    toolState,
-    displaySetInstanceUid
+    imageIds.length,
+    segmentsOnFrame
   );
 
   const cachedStack = StackManager.findOrCreateStack(
@@ -123,7 +126,7 @@ async function handleSegmentationStorage(
   return {
     studyInstanceUid,
     displaySetInstanceUid,
-    stack
+    stack,
   };
 }
 

extensions/dicom-html/package.json

@@ -29,7 +29,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "dcmjs": "^0.3.3",
+    "dcmjs": "^0.6.0",
     "prop-types": "^15.6.2",
     "react": "^15.0.0 || ^16.0.0",
     "react-dom": "^15.0.0 || ^16.0.0"

extensions/vtk/package.json

@@ -34,7 +34,7 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.2.8",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.4.7",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
@@ -53,9 +53,9 @@
   "devDependencies": {
     "@ohif/core": "^0.50.5",
     "@ohif/ui": "^0.50.4",
-    "cornerstone-tools": "^3.13.0",
+    "cornerstone-tools": "^4.0.0",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.5.1",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "gh-pages": "^2.0.1",
     "i18next": "^17.0.3",

platform/core/package.json

@@ -32,7 +32,7 @@
   },
   "peerDependencies": {
     "cornerstone-core": "^2.2.8",
-    "cornerstone-tools": "^3.9.0",
+    "cornerstone-tools": "^4.0.0",
     "cornerstone-wado-image-loader": "^3.0.0",
     "dicom-parser": "^1.8.3"
   },

platform/viewer/package.json

@@ -54,9 +54,9 @@
     "core-js": "^3.2.1",
     "cornerstone-core": "^2.2.8",
     "cornerstone-math": "^0.1.8",
-    "cornerstone-tools": "^3.19.2",
+    "cornerstone-tools": "^4.0.0",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.4.7",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "dicomweb-client": "^0.4.4",
     "hammerjs": "^2.0.8",

platform/viewer/src/setupTools.js

@@ -177,7 +177,7 @@ export default function setupTools(store) {
     { name: 'StackScroll', mouseButtonMasks: [1] },
     { name: 'Brush', mouseButtonMasks: [1] },
     {
-      name: 'FreehandMouse',
+      name: 'FreehandRoi',
       props: {
         configuration: {
           getMeasurementLocationCallback: toolLabellingFlowCallback,