feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG * feat: move segmentation service * update segmentation service methods * fix: viewport data structure * feat: Add initial render for the DICOM SEG for each displaySet * fix: various wrong architectural dependencies between services * feat: initial separate SEG display in each viewport * feat: refactore viewport action bar * initial work for SEG hydration * fix: various bugs regarding drag and dropping different viewports * fix: rendering issues for multiple seg displaysets * fix: bugs for thumbnail and hydration * feat: fix the initial segment color * update after rebase * feat: initial design for the segmentation group table * feat: initial new design for the segmentation panel * feat: segmentation panel * feat: make segmentation appear on all related viewports * fix: segmentation load bug based on functional groups * initial work for segmentation crosshairs * fix: various stylings and functionality * fix: various stylings for the seg panel * fix: overflow styles * feat: add more ui components * feat: added segmentation config * feat: add jump to segment * feat: add jump to segment for DICOM SEG viewport * fix: bugs after rebase * feat: jump in segmentation viewport * fix: mpr support for seg * feat: add more icons * feat: new icons * feat: add new side panel * feat: add segmentation config * feat: add loading indicator to ohif * feat: make hanging protocols follow matching rules for viewports * feat: enhance drag and drop to be hanging protocol aware * fix: mpr restore previous layout * fix: crosshairs toggle * fix: add auth headers to the dicom loader via dicomwebclient * fix: bug for crosshairs toggle in mpr * fix: seg viewport reusing old toolGroup * feat: add loading animation with lottie * fix: various bugs for Segmentation hydration in mpr * feat: change outline alpha to outline opacity * feat: loading indicator for seg viewport * fix: various segmentation group styles * fix: local mode for seg * feat: add animation for the highlight * fix: loading indicatro to show segment indices * feat: enhance modality drop down ui * fix: panels * fix: download form * fix: layout shift in loading indicator * fix: loading indicator to have correct values * fix: update software number * fix: image jump between MPR and default * fix: segmentation cleanup and cine service cleanup * fix: segmentation toolgroup clena up * fix: highlight interval should not trigger again * fix: issue with multiframe sorting * rename: change onSeriesChange to onArrowsClick * fix: buttons for tmtv and layout shift * fix: various bugs wrt crosshairs * fix: crosshairs re init on reset camera * fix: middle slice calculation different from cs middle reset camera * fix: reset camera should reset viewport camera * fix: loading segments in MPR mode * fix: tmtv hp back to before * fix: layout shift * feat: orientation markers for volume viewport * fix: capture for volume viewports * fix: memory leak for back to worklist * fix: loading bar bg color * fix: side panel for only one panel * fix: react select style in production * fix: various styling for segmentation groups * fix: various ui styles * feat: add new segmentation config styles * fix: hover state for segmentation item * fix: side panel layout shift * temp add panels * try to fix scrollbar for thimbnail * fix: scroll not appearing for side panels * feat: changed styles for scrollbar * feat: add cpu fallback warning * fix: webworker destroy * fix: select styles * fix: orientation marker color and position * fix: capture screenshot for volume viewports * fix: hide segment visibility on mpr * fix: reloading an already loaded seg displayset * feat: add is equal * fix: mpr jump to measurements * apply review comments * fix: optimization for the segmentation load * fix: remove unnecessary context menu and hp service reset * fix: segmentation service wrt brush settings * feat: initial work for the stack synchronization * fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements * fix: various react proptypes * fix: thumbnails for the tmtv and change default props to default params * feat: make showing loading indicator configurable and add docs * bump versions and add more docs * fix demo * update cornerstone versions * apply review comments * feat: add reference lines * fix build * fix unit tests * add reference lines icon * fix: e2e tests * fix static wado config * docs: add segmentation service docs * fix: docker build * fix: keep camera and bump versions * Try re-enabling minification to fix deploy previews Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
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@@ -0,0 +1,312 @@
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import vtkMath from '@kitware/vtk.js/Common/Core/Math';
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import { utils } from '@ohif/core';
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import { SOPClassHandlerId } from './id';
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import dcmjs from 'dcmjs';
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const { DicomMessage, DicomMetaDictionary } = dcmjs.data;
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const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4'];
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let loadPromises = {};
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function _getDisplaySetsFromSeries(
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instances,
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servicesManager,
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extensionManager
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) {
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const instance = instances[0];
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const {
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StudyInstanceUID,
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SeriesInstanceUID,
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SOPInstanceUID,
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SeriesDescription,
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SeriesNumber,
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SeriesDate,
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SOPClassUID,
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wadoRoot,
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wadoUri,
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wadoUriRoot,
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} = instance;
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const displaySet = {
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Modality: 'SEG',
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loading: false,
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isReconstructable: true, // by default for now since it is a volumetric SEG currently
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displaySetInstanceUID: utils.guid(),
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SeriesDescription,
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SeriesNumber,
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SeriesDate,
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SOPInstanceUID,
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SeriesInstanceUID,
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StudyInstanceUID,
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SOPClassHandlerId,
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SOPClassUID,
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referencedImages: null,
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referencedSeriesInstanceUID: null,
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referencedDisplaySetInstanceUID: null,
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isDerivedDisplaySet: true,
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isLoaded: false,
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isHydrated: false,
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segments: {},
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sopClassUids,
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instance,
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wadoRoot,
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wadoUriRoot,
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wadoUri,
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};
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const referencedSeriesSequence = instance.ReferencedSeriesSequence;
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if (!referencedSeriesSequence) {
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throw new Error('ReferencedSeriesSequence is missing for the SEG');
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}
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const referencedSeries = referencedSeriesSequence[0];
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displaySet.referencedImages =
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instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
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displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
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displaySet.getReferenceDisplaySet = () => {
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const { DisplaySetService } = servicesManager.services;
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const referencedDisplaySets = DisplaySetService.getDisplaySetsForSeries(
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displaySet.referencedSeriesInstanceUID
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);
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if (!referencedDisplaySets || referencedDisplaySets.length === 0) {
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throw new Error('Referenced DisplaySet is missing for the SEG');
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}
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const referencedDisplaySet = referencedDisplaySets[0];
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displaySet.referencedDisplaySetInstanceUID =
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referencedDisplaySet.displaySetInstanceUID;
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// Todo: this needs to be able to work with other reference volumes (other than streaming) such as nifti, etc.
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displaySet.referencedVolumeURI = referencedDisplaySet.displaySetInstanceUID;
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const referencedVolumeId = `cornerstoneStreamingImageVolume:${displaySet.referencedVolumeURI}`;
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displaySet.referencedVolumeId = referencedVolumeId;
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return referencedDisplaySet;
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};
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displaySet.load = async ({ headers }) =>
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await _load(displaySet, servicesManager, extensionManager, headers);
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return [displaySet];
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}
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function _load(segDisplaySet, servicesManager, extensionManager, headers) {
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const { SOPInstanceUID } = segDisplaySet;
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if (
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(segDisplaySet.loading || segDisplaySet.isLoaded) &&
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loadPromises[SOPInstanceUID]
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) {
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return loadPromises[SOPInstanceUID];
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}
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segDisplaySet.loading = true;
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// We don't want to fire multiple loads, so we'll wait for the first to finish
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// and also return the same promise to any other callers.
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loadPromises[SOPInstanceUID] = new Promise(async (resolve, reject) => {
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const { SegmentationService } = servicesManager.services;
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if (_segmentationExistsInCache(segDisplaySet, SegmentationService)) {
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return;
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}
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if (
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!segDisplaySet.segments ||
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Object.keys(segDisplaySet.segments).length === 0
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) {
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const segments = await _loadSegments(
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extensionManager,
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segDisplaySet,
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headers
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);
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segDisplaySet.segments = segments;
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}
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const suppressEvents = true;
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SegmentationService.createSegmentationForSEGDisplaySet(
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segDisplaySet,
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null,
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suppressEvents
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)
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.then(() => {
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segDisplaySet.loading = false;
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resolve();
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})
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.catch(error => {
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segDisplaySet.loading = false;
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reject(error);
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});
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});
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return loadPromises[SOPInstanceUID];
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}
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async function _loadSegments(extensionManager, segDisplaySet, headers) {
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const utilityModule = extensionManager.getModuleEntry(
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'@ohif/extension-cornerstone.utilityModule.common'
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);
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const { dicomLoaderService } = utilityModule.exports;
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const segArrayBuffer = await dicomLoaderService.findDicomDataPromise(
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segDisplaySet,
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null,
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headers
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);
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const dicomData = DicomMessage.readFile(segArrayBuffer);
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const dataset = DicomMetaDictionary.naturalizeDataset(dicomData.dict);
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dataset._meta = DicomMetaDictionary.namifyDataset(dicomData.meta);
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if (!Array.isArray(dataset.SegmentSequence)) {
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dataset.SegmentSequence = [dataset.SegmentSequence];
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}
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const segments = _getSegments(dataset);
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return segments;
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}
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function _segmentationExistsInCache(segDisplaySet, SegmentationService) {
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// This should be abstracted with the CornerstoneCacheService
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const labelmapVolumeId = segDisplaySet.displaySetInstanceUID;
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const segVolume = SegmentationService.getLabelmapVolume(labelmapVolumeId);
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return segVolume !== undefined;
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}
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function _getPixelData(dataset, segments) {
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let frameSize = Math.ceil((dataset.Rows * dataset.Columns) / 8);
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let nextOffset = 0;
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Object.keys(segments).forEach(segmentKey => {
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const segment = segments[segmentKey];
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segment.numberOfFrames = segment.functionalGroups.length;
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segment.size = segment.numberOfFrames * frameSize;
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segment.offset = nextOffset;
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nextOffset = segment.offset + segment.size;
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const packedSegment = dataset.PixelData[0].slice(
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segment.offset,
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nextOffset
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);
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segment.pixelData = dcmjs.data.BitArray.unpack(packedSegment);
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segment.geometry = geometryFromFunctionalGroups(
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dataset,
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segment.functionalGroups
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);
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});
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return segments;
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}
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function geometryFromFunctionalGroups(dataset, perFrame) {
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let pixelMeasures =
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dataset.SharedFunctionalGroupsSequence.PixelMeasuresSequence;
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let planeOrientation =
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dataset.SharedFunctionalGroupsSequence.PlaneOrientationSequence;
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let planePosition = perFrame[0].PlanePositionSequence; // TODO: assume sorted frames!
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const geometry = {};
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// NB: DICOM PixelSpacing is defined as Row then Column,
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// unlike ImageOrientationPatient
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let spacingBetweenSlices = pixelMeasures.SpacingBetweenSlices;
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if (!spacingBetweenSlices) {
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if (pixelMeasures.SliceThickness) {
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console.log('Using SliceThickness as SpacingBetweenSlices');
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spacingBetweenSlices = pixelMeasures.SliceThickness;
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}
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}
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geometry.spacing = [
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pixelMeasures.PixelSpacing[1],
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pixelMeasures.PixelSpacing[0],
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spacingBetweenSlices,
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].map(Number);
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geometry.dimensions = [dataset.Columns, dataset.Rows, perFrame.length].map(
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Number
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);
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let orientation = planeOrientation.ImageOrientationPatient.map(Number);
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const columnStepToPatient = orientation.slice(0, 3);
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const rowStepToPatient = orientation.slice(3, 6);
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geometry.planeNormal = [];
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vtkMath.cross(columnStepToPatient, rowStepToPatient, geometry.planeNormal);
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let firstPosition = perFrame[0].PlanePositionSequence.ImagePositionPatient.map(
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Number
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);
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let lastPosition = perFrame[
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perFrame.length - 1
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].PlanePositionSequence.ImagePositionPatient.map(Number);
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geometry.sliceStep = [];
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vtkMath.subtract(lastPosition, firstPosition, geometry.sliceStep);
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vtkMath.normalize(geometry.sliceStep);
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geometry.direction = columnStepToPatient
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.concat(rowStepToPatient)
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.concat(geometry.sliceStep);
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geometry.origin = planePosition.ImagePositionPatient.map(Number);
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return geometry;
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}
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function _getSegments(dataset) {
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const segments = {};
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dataset.SegmentSequence.forEach(segment => {
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const cielab = segment.RecommendedDisplayCIELabValue;
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const rgba = dcmjs.data.Colors.dicomlab2RGB(cielab).map(x =>
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Math.round(x * 255)
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);
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rgba.push(255);
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const segmentNumber = segment.SegmentNumber;
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segments[segmentNumber] = {
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color: rgba,
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functionalGroups: [],
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offset: null,
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size: null,
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pixelData: null,
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label: segment.SegmentLabel,
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};
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});
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// make a list of functional groups per segment
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dataset.PerFrameFunctionalGroupsSequence.forEach(functionalGroup => {
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const segmentNumber =
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functionalGroup.SegmentIdentificationSequence.ReferencedSegmentNumber;
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segments[segmentNumber].functionalGroups.push(functionalGroup);
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});
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return _getPixelData(dataset, segments);
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}
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function getSopClassHandlerModule({ servicesManager, extensionManager }) {
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const getDisplaySetsFromSeries = instances => {
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return _getDisplaySetsFromSeries(
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instances,
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servicesManager,
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extensionManager
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);
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};
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return [
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{
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name: 'dicom-seg',
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sopClassUids,
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getDisplaySetsFromSeries,
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},
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];
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}
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export default getSopClassHandlerModule;
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@@ -0,0 +1,7 @@
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import packageJson from '../package.json';
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const id = packageJson.name;
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const SOPClassHandlerName = 'dicom-seg';
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const SOPClassHandlerId = `${id}.sopClassHandlerModule.${SOPClassHandlerName}`;
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export { id, SOPClassHandlerId, SOPClassHandlerName };
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@@ -0,0 +1,93 @@
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import { id } from './id';
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import React from 'react';
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import getSopClassHandlerModule from './getSopClassHandlerModule';
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import PanelSegmentation from './panels/PanelSegmentation';
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const Component = React.lazy(() => {
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return import(
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/* webpackPrefetch: true */ './viewports/OHIFCornerstoneSEGViewport'
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);
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});
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const OHIFCornerstoneSEGViewport = props => {
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return (
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<React.Suspense fallback={<div>Loading...</div>}>
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<Component {...props} />
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</React.Suspense>
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);
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};
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/**
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* You can remove any of the following modules if you don't need them.
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*/
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const extension = {
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/**
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* Only required property. Should be a unique value across all extensions.
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* You ID can be anything you want, but it should be unique.
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*/
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id,
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/**
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* Perform any pre-registration tasks here. This is called before the extension
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* is registered. Usually we run tasks such as: configuring the libraries
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* (e.g. cornerstone, cornerstoneTools, ...) or registering any services that
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* this extension is providing.
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*/
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preRegistration: ({
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servicesManager,
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commandsManager,
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configuration = {},
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}) => {},
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/**
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* PanelModule should provide a list of panels that will be available in OHIF
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* for Modes to consume and render. Each panel is defined by a {name,
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* iconName, iconLabel, label, component} object. Example of a panel module
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* is the StudyBrowserPanel that is provided by the default extension in OHIF.
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*/
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getPanelModule: ({ servicesManager, commandsManager, extensionManager }) => {
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const wrappedPanelSegmentation = () => {
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return (
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<PanelSegmentation
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commandsManager={commandsManager}
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servicesManager={servicesManager}
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extensionManager={extensionManager}
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/>
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);
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};
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return [
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{
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name: 'panelSegmentation',
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iconName: 'tab-segmentation',
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iconLabel: 'Segmentation',
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label: 'Segmentation',
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component: wrappedPanelSegmentation,
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},
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];
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},
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getViewportModule({ servicesManager, extensionManager }) {
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const ExtendedOHIFCornerstoneSEGViewport = props => {
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return (
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<OHIFCornerstoneSEGViewport
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servicesManager={servicesManager}
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extensionManager={extensionManager}
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{...props}
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||||
/>
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||||
);
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||||
};
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||||
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return [
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{ name: 'dicom-seg', component: ExtendedOHIFCornerstoneSEGViewport },
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||||
];
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},
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/**
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* SopClassHandlerModule should provide a list of sop class handlers that will be
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* available in OHIF for Modes to consume and use to create displaySets from Series.
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* Each sop class handler is defined by a { name, sopClassUids, getDisplaySetsFromSeries}.
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* Examples include the default sop class handler provided by the default extension
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||||
*/
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getSopClassHandlerModule,
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||||
};
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||||
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export default extension;
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@@ -0,0 +1,292 @@
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import React, { useEffect, useState, useCallback } from 'react';
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import PropTypes from 'prop-types';
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import { SegmentationGroupTable } from '@ohif/ui';
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import callInputDialog from './callInputDialog';
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||||
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||||
import { useTranslation } from 'react-i18next';
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||||
import callColorPickerDialog from './callColorPickerDialog';
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||||
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||||
export default function PanelSegmentation({
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||||
servicesManager,
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||||
commandsManager,
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||||
}) {
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||||
const {
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||||
SegmentationService,
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||||
UIDialogService,
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||||
ViewportGridService,
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||||
ToolGroupService,
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||||
CornerstoneViewportService,
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||||
} = servicesManager.services;
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||||
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||||
const { t } = useTranslation('PanelSegmentation');
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||||
const [selectedSegmentationId, setSelectedSegmentationId] = useState(null);
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||||
const [
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||||
initialSegmentationConfigurations,
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||||
setInitialSegmentationConfigurations,
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||||
] = useState(SegmentationService.getConfiguration());
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||||
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||||
const [segmentations, setSegmentations] = useState(() =>
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||||
SegmentationService.getSegmentations()
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||||
);
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||||
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||||
const [isMinimized, setIsMinimized] = useState({});
|
||||
|
||||
const onToggleMinimizeSegmentation = useCallback(
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||||
id => {
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||||
setIsMinimized(prevState => ({
|
||||
...prevState,
|
||||
[id]: !prevState[id],
|
||||
}));
|
||||
},
|
||||
[setIsMinimized]
|
||||
);
|
||||
|
||||
// Only expand the last segmentation added to the list and collapse the rest
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||||
useEffect(() => {
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||||
const lastSegmentationId = segmentations[segmentations.length - 1]?.id;
|
||||
if (lastSegmentationId) {
|
||||
setIsMinimized(prevState => ({
|
||||
...prevState,
|
||||
[lastSegmentationId]: false,
|
||||
}));
|
||||
}
|
||||
}, [segmentations, setIsMinimized]);
|
||||
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const added = SegmentationService.EVENTS.SEGMENTATION_ADDED;
|
||||
const updated = SegmentationService.EVENTS.SEGMENTATION_UPDATED;
|
||||
const removed = SegmentationService.EVENTS.SEGMENTATION_REMOVED;
|
||||
const subscriptions = [];
|
||||
|
||||
[added, updated, removed].forEach(evt => {
|
||||
const { unsubscribe } = SegmentationService.subscribe(evt, () => {
|
||||
const segmentations = SegmentationService.getSegmentations();
|
||||
setSegmentations(segmentations);
|
||||
});
|
||||
subscriptions.push(unsubscribe);
|
||||
});
|
||||
|
||||
return () => {
|
||||
subscriptions.forEach(unsub => {
|
||||
unsub();
|
||||
});
|
||||
};
|
||||
}, []);
|
||||
|
||||
const onSegmentationClick = (segmentationId: string) => {
|
||||
SegmentationService.setActiveSegmentationForToolGroup(segmentationId);
|
||||
};
|
||||
|
||||
const onSegmentationDelete = (segmentationId: string) => {
|
||||
SegmentationService.remove(segmentationId);
|
||||
};
|
||||
|
||||
const getToolGroupIds = segmentationId => {
|
||||
const toolGroupIds = SegmentationService.getToolGroupIdsWithSegmentation(
|
||||
segmentationId
|
||||
);
|
||||
|
||||
return toolGroupIds;
|
||||
};
|
||||
|
||||
const onSegmentClick = (segmentationId, segmentIndex) => {
|
||||
SegmentationService.setActiveSegmentForSegmentation(
|
||||
segmentationId,
|
||||
segmentIndex
|
||||
);
|
||||
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
// const toolGroupId =
|
||||
SegmentationService.setActiveSegmentationForToolGroup(
|
||||
segmentationId,
|
||||
toolGroupId
|
||||
);
|
||||
SegmentationService.jumpToSegmentCenter(
|
||||
segmentationId,
|
||||
segmentIndex,
|
||||
toolGroupId
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentEdit = (segmentationId, segmentIndex) => {
|
||||
const segmentation = SegmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const segment = segmentation.segments[segmentIndex];
|
||||
const { label } = segment;
|
||||
|
||||
callInputDialog(UIDialogService, label, (label, actionId) => {
|
||||
if (label === '') {
|
||||
return;
|
||||
}
|
||||
|
||||
SegmentationService.setSegmentLabelForSegmentation(
|
||||
segmentationId,
|
||||
segmentIndex,
|
||||
label
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentationEdit = segmentationId => {
|
||||
const segmentation = SegmentationService.getSegmentation(segmentationId);
|
||||
const { label } = segmentation;
|
||||
|
||||
callInputDialog(UIDialogService, label, (label, actionId) => {
|
||||
if (label === '') {
|
||||
return;
|
||||
}
|
||||
|
||||
SegmentationService.addOrUpdateSegmentation(
|
||||
{
|
||||
id: segmentationId,
|
||||
label,
|
||||
},
|
||||
false, // suppress event
|
||||
true // notYetUpdatedAtSource
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentColorClick = (segmentationId, segmentIndex) => {
|
||||
// Todo: Implement color picker later
|
||||
return;
|
||||
};
|
||||
|
||||
const onSegmentDelete = (segmentationId, segmentIndex) => {
|
||||
// SegmentationService.removeSegmentFromSegmentation(
|
||||
// segmentationId,
|
||||
// segmentIndex
|
||||
// );
|
||||
console.warn('not implemented yet');
|
||||
};
|
||||
|
||||
const onToggleSegmentVisibility = (segmentationId, segmentIndex) => {
|
||||
const segmentation = SegmentationService.getSegmentation(segmentationId);
|
||||
const segmentInfo = segmentation.segments[segmentIndex];
|
||||
const isVisible = !segmentInfo.isVisible;
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
// Todo: right now we apply the visibility to all tool groups
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
SegmentationService.setSegmentVisibility(
|
||||
segmentationId,
|
||||
segmentIndex,
|
||||
isVisible,
|
||||
toolGroupId
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const onToggleSegmentationVisibility = segmentationId => {
|
||||
SegmentationService.toggleSegmentationVisibility(segmentationId);
|
||||
};
|
||||
|
||||
const setSegmentationConfiguration = useCallback(
|
||||
(segmentationId, key, value) => {
|
||||
SegmentationService.setConfiguration({
|
||||
segmentationId,
|
||||
[key]: value,
|
||||
});
|
||||
},
|
||||
[SegmentationService]
|
||||
);
|
||||
|
||||
return (
|
||||
<div className="flex flex-col justify-between mt-1">
|
||||
{/* show segmentation table */}
|
||||
{segmentations?.length ? (
|
||||
<SegmentationGroupTable
|
||||
title={t('Segmentations')}
|
||||
showAddSegmentation={false}
|
||||
segmentations={segmentations}
|
||||
isMinimized={isMinimized}
|
||||
activeSegmentationId={selectedSegmentationId}
|
||||
onSegmentationClick={onSegmentationClick}
|
||||
onSegmentationDelete={onSegmentationDelete}
|
||||
onSegmentationEdit={onSegmentationEdit}
|
||||
onSegmentClick={onSegmentClick}
|
||||
onSegmentEdit={onSegmentEdit}
|
||||
onSegmentColorClick={onSegmentColorClick}
|
||||
onSegmentDelete={onSegmentDelete}
|
||||
onToggleSegmentVisibility={onToggleSegmentVisibility}
|
||||
onToggleSegmentationVisibility={onToggleSegmentationVisibility}
|
||||
onToggleMinimizeSegmentation={onToggleMinimizeSegmentation}
|
||||
segmentationConfig={{
|
||||
initialConfig: initialSegmentationConfigurations,
|
||||
usePercentage: true,
|
||||
}}
|
||||
setRenderOutline={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'renderOutline',
|
||||
value
|
||||
)
|
||||
}
|
||||
setOutlineOpacityActive={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'outlineOpacity',
|
||||
value
|
||||
)
|
||||
}
|
||||
setRenderFill={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'renderFill',
|
||||
value
|
||||
)
|
||||
}
|
||||
setRenderInactiveSegmentations={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'renderInactiveSegmentations',
|
||||
value
|
||||
)
|
||||
}
|
||||
setOutlineWidthActive={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'outlineWidthActive',
|
||||
value
|
||||
)
|
||||
}
|
||||
setFillAlpha={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'fillAlpha',
|
||||
value
|
||||
)
|
||||
}
|
||||
setFillAlphaInactive={value =>
|
||||
setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'fillAlphaInactive',
|
||||
value
|
||||
)
|
||||
}
|
||||
/>
|
||||
) : null}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
PanelSegmentation.propTypes = {
|
||||
commandsManager: PropTypes.shape({
|
||||
runCommand: PropTypes.func.isRequired,
|
||||
}),
|
||||
servicesManager: PropTypes.shape({
|
||||
services: PropTypes.shape({
|
||||
SegmentationService: PropTypes.shape({
|
||||
getSegmentation: PropTypes.func.isRequired,
|
||||
getSegmentations: PropTypes.func.isRequired,
|
||||
toggleSegmentationVisibility: PropTypes.func.isRequired,
|
||||
subscribe: PropTypes.func.isRequired,
|
||||
EVENTS: PropTypes.object.isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
};
|
||||
@@ -0,0 +1,63 @@
|
||||
import React from 'react';
|
||||
import { Input, Dialog } from '@ohif/ui';
|
||||
|
||||
function callInputDialog(UIDialogService, label, callback) {
|
||||
const dialogId = 'enter-segment-label';
|
||||
|
||||
const onSubmitHandler = ({ action, value }) => {
|
||||
switch (action.id) {
|
||||
case 'save':
|
||||
callback(value.label, action.id);
|
||||
break;
|
||||
case 'cancel':
|
||||
callback('', action.id);
|
||||
break;
|
||||
}
|
||||
UIDialogService.dismiss({ id: dialogId });
|
||||
};
|
||||
|
||||
if (UIDialogService) {
|
||||
UIDialogService.create({
|
||||
id: dialogId,
|
||||
centralize: true,
|
||||
isDraggable: false,
|
||||
showOverlay: true,
|
||||
content: Dialog,
|
||||
contentProps: {
|
||||
title: 'Enter Segment Label',
|
||||
value: { label },
|
||||
noCloseButton: true,
|
||||
onClose: () => UIDialogService.dismiss({ id: dialogId }),
|
||||
actions: [
|
||||
{ id: 'cancel', text: 'Cancel', type: 'primary' },
|
||||
{ id: 'save', text: 'Confirm', type: 'secondary' },
|
||||
],
|
||||
onSubmit: onSubmitHandler,
|
||||
body: ({ value, setValue }) => {
|
||||
return (
|
||||
<div className="p-4 bg-primary-dark">
|
||||
<Input
|
||||
autoFocus
|
||||
className="mt-2 bg-black border-primary-main"
|
||||
type="text"
|
||||
containerClassName="mr-2"
|
||||
value={value.label}
|
||||
onChange={event => {
|
||||
event.persist();
|
||||
setValue(value => ({ ...value, label: event.target.value }));
|
||||
}}
|
||||
onKeyPress={event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmitHandler({ value, action: { id: 'save' } });
|
||||
}
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
export default callInputDialog;
|
||||
@@ -0,0 +1,35 @@
|
||||
import React, { useReducer } from 'react';
|
||||
|
||||
// Todo: use defaults in cs3d
|
||||
const initialState = {
|
||||
renderOutline: true,
|
||||
renderFill: true,
|
||||
outlineOpacity: 0.9,
|
||||
outlineWidth: 3,
|
||||
fillOpacity: 0.9,
|
||||
fillOpacityInactive: 0.8,
|
||||
renderInactiveSegmentations: true,
|
||||
};
|
||||
|
||||
const reducer = (state, action) => {
|
||||
switch (action.type) {
|
||||
case 'RENDER_OUTLINE':
|
||||
return { ...state, renderOutline: action.payload.value };
|
||||
case 'RENDER_FILL':
|
||||
return { ...state, renderFill: action.payload.value };
|
||||
case 'SET_OUTLINE_OPACITY':
|
||||
return { ...state, outlineOpacity: action.payload.value };
|
||||
case 'SET_OUTLINE_WIDTH':
|
||||
return { ...state, outlineWidth: action.payload.value };
|
||||
case 'SET_FILL_OPACITY':
|
||||
return { ...state, fillOpacity: action.payload.value };
|
||||
case 'SET_FILL_OPACITY_INACTIVE':
|
||||
return { ...state, fillOpacityInactive: action.payload.value };
|
||||
case 'RENDER_INACTIVE_SEGMENTATIONS':
|
||||
return { ...state, renderInactiveSegmentations: action.payload.value };
|
||||
default:
|
||||
return state;
|
||||
}
|
||||
};
|
||||
|
||||
export { initialState, reducer };
|
||||
@@ -0,0 +1,71 @@
|
||||
async function _hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportIndex,
|
||||
toolGroupId,
|
||||
servicesManager,
|
||||
}) {
|
||||
const {
|
||||
SegmentationService,
|
||||
HangingProtocolService,
|
||||
ViewportGridService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const displaySetInstanceUID = segDisplaySet.referencedDisplaySetInstanceUID;
|
||||
|
||||
let segmentationId = null;
|
||||
|
||||
// We need the hydration to notify panels about the new segmentation added
|
||||
const suppressEvents = false;
|
||||
|
||||
segmentationId = await SegmentationService.createSegmentationForSEGDisplaySet(
|
||||
segDisplaySet,
|
||||
segmentationId,
|
||||
suppressEvents
|
||||
);
|
||||
|
||||
SegmentationService.hydrateSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
|
||||
const { viewports } = ViewportGridService.getState();
|
||||
|
||||
const updatedViewports = HangingProtocolService.getViewportsRequireUpdate(
|
||||
viewportIndex,
|
||||
displaySetInstanceUID
|
||||
);
|
||||
|
||||
ViewportGridService.setDisplaySetsForViewports(updatedViewports);
|
||||
|
||||
// Todo: fix this after we have a better way for stack viewport segmentations
|
||||
|
||||
// check every viewport in the viewports to see if the displaySetInstanceUID
|
||||
// is being displayed, if so we need to update the viewport to use volume viewport
|
||||
// (if already is not using it) since Cornerstone3D currently only supports
|
||||
// volume viewport for segmentation
|
||||
viewports.forEach((viewport, index) => {
|
||||
if (index === viewportIndex) {
|
||||
return;
|
||||
}
|
||||
|
||||
const shouldDisplaySeg = SegmentationService.shouldRenderSegmentation(
|
||||
viewport.displaySetInstanceUIDs,
|
||||
segDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
if (shouldDisplaySeg) {
|
||||
ViewportGridService.setDisplaySetsForViewport({
|
||||
viewportIndex: index,
|
||||
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
|
||||
viewportOptions: {
|
||||
viewportType: 'volume',
|
||||
toolGroupId,
|
||||
initialImageOptions: {
|
||||
preset: 'middle',
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
export default _hydrateSEGDisplaySet;
|
||||
@@ -0,0 +1,34 @@
|
||||
function createSEGToolGroupAndAddTools(
|
||||
ToolGroupService,
|
||||
toolGroupId,
|
||||
extensionManager
|
||||
) {
|
||||
const utilityModule = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.utilityModule.tools'
|
||||
);
|
||||
|
||||
const { toolNames, Enums } = utilityModule.exports;
|
||||
|
||||
const tools = {
|
||||
active: [
|
||||
{
|
||||
toolName: toolNames.WindowLevel,
|
||||
bindings: [{ mouseButton: Enums.MouseBindings.Primary }],
|
||||
},
|
||||
{
|
||||
toolName: toolNames.Pan,
|
||||
bindings: [{ mouseButton: Enums.MouseBindings.Auxiliary }],
|
||||
},
|
||||
{
|
||||
toolName: toolNames.Zoom,
|
||||
bindings: [{ mouseButton: Enums.MouseBindings.Secondary }],
|
||||
},
|
||||
{ toolName: toolNames.StackScrollMouseWheel, bindings: [] },
|
||||
],
|
||||
enabled: [{ toolName: toolNames.SegmentationDisplay }],
|
||||
};
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools, {});
|
||||
}
|
||||
|
||||
export default createSEGToolGroupAndAddTools;
|
||||
@@ -0,0 +1,70 @@
|
||||
import hydrateSEGDisplaySet from './_hydrateSEG';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
HYDRATE_SEG: 5,
|
||||
};
|
||||
|
||||
function promptHydrateSEG({
|
||||
servicesManager,
|
||||
segDisplaySet,
|
||||
viewportIndex,
|
||||
toolGroupId = 'default',
|
||||
}) {
|
||||
const { UIViewportDialogService } = servicesManager.services;
|
||||
|
||||
return new Promise(async function(resolve, reject) {
|
||||
const promptResult = await _askHydrate(
|
||||
UIViewportDialogService,
|
||||
viewportIndex
|
||||
);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
const isHydrated = await hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportIndex,
|
||||
toolGroupId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(UIViewportDialogService, viewportIndex) {
|
||||
return new Promise(function(resolve, reject) {
|
||||
const message = 'Do you want to open this Segmentation?';
|
||||
const actions = [
|
||||
{
|
||||
type: 'secondary',
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
type: 'primary',
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
];
|
||||
const onSubmit = result => {
|
||||
UIViewportDialogService.hide();
|
||||
resolve(result);
|
||||
};
|
||||
|
||||
UIViewportDialogService.show({
|
||||
viewportIndex,
|
||||
type: 'info',
|
||||
message,
|
||||
actions,
|
||||
onSubmit,
|
||||
onOutsideClick: () => {
|
||||
UIViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
export default promptHydrateSEG;
|
||||
@@ -0,0 +1,424 @@
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import OHIF, { utils } from '@ohif/core';
|
||||
import {
|
||||
Notification,
|
||||
ViewportActionBar,
|
||||
useViewportGrid,
|
||||
useViewportDialog,
|
||||
LoadingIndicatorProgress,
|
||||
} from '@ohif/ui';
|
||||
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
import createSEGToolGroupAndAddTools from '../utils/initSEGToolGroup';
|
||||
import _hydrateSEGDisplaySet from '../utils/_hydrateSEG';
|
||||
import promptHydrateSEG from '../utils/promptHydrateSEG';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
|
||||
const { formatDate } = utils;
|
||||
const SEG_TOOLGROUP_BASE_NAME = 'SEGToolGroup';
|
||||
|
||||
function OHIFCornerstoneSEGViewport(props) {
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
viewportIndex,
|
||||
viewportLabel,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
|
||||
const { t } = useTranslation('SEGViewport');
|
||||
|
||||
const {
|
||||
DisplaySetService,
|
||||
ToolGroupService,
|
||||
SegmentationService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const toolGroupId = `${SEG_TOOLGROUP_BASE_NAME}-${viewportIndex}`;
|
||||
|
||||
// SEG viewport will always have a single display set
|
||||
if (displaySets.length > 1) {
|
||||
throw new Error('SEG viewport should only have a single display set');
|
||||
}
|
||||
|
||||
const segDisplaySet = displaySets[0];
|
||||
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const [viewportDialogState, viewportDialogApi] = useViewportDialog();
|
||||
|
||||
// States
|
||||
const [isToolGroupCreated, setToolGroupCreated] = useState(false);
|
||||
const [selectedSegment, setSelectedSegment] = useState(1);
|
||||
|
||||
// Hydration means that the SEG is opened and segments are loaded into the
|
||||
// segmentation panel, and SEG is also rendered on any viewport that is in the
|
||||
// same frameOfReferenceUID as the referencedSeriesUID of the SEG. However,
|
||||
// loading basically means SEG loading over network and bit unpacking of the
|
||||
// SEG data.
|
||||
const [isHydrated, setIsHydrated] = useState(segDisplaySet.isHydrated);
|
||||
const [segIsLoading, setSegIsLoading] = useState(!segDisplaySet.isLoaded);
|
||||
const [element, setElement] = useState(null);
|
||||
const [processingProgress, setProcessingProgress] = useState({
|
||||
segmentIndex: 1,
|
||||
totalSegments: null,
|
||||
});
|
||||
|
||||
// refs
|
||||
const referencedDisplaySetRef = useRef(null);
|
||||
|
||||
const { viewports, activeViewportIndex } = viewportGrid;
|
||||
|
||||
const referencedDisplaySet = segDisplaySet.getReferenceDisplaySet();
|
||||
const referencedDisplaySetMetadata = _getReferencedDisplaySetMetadata(
|
||||
referencedDisplaySet
|
||||
);
|
||||
|
||||
referencedDisplaySetRef.current = {
|
||||
displaySet: referencedDisplaySet,
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
/**
|
||||
* OnElementEnabled callback which is called after the cornerstoneExtension
|
||||
* has enabled the element. Note: we delegate all the image rendering to
|
||||
* cornerstoneExtension, so we don't need to do anything here regarding
|
||||
* the image rendering, element enabling etc.
|
||||
*/
|
||||
const onElementEnabled = evt => {
|
||||
setElement(evt.detail.element);
|
||||
};
|
||||
|
||||
const onElementDisabled = () => {
|
||||
setElement(null);
|
||||
};
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
const {
|
||||
displaySet: referencedDisplaySet,
|
||||
} = referencedDisplaySetRef.current;
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
|
||||
return (
|
||||
<Component
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, segDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'volume',
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
}}
|
||||
onElementEnabled={onElementEnabled}
|
||||
onElementDisabled={onElementDisabled}
|
||||
// initialImageIndex={initialImageIndex}
|
||||
></Component>
|
||||
);
|
||||
}, [viewportIndex, segDisplaySet, toolGroupId]);
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
direction = direction === 'left' ? -1 : 1;
|
||||
const segmentationId = segDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = SegmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const { segments } = segmentation;
|
||||
|
||||
const numberOfSegments = Object.keys(segments).length;
|
||||
|
||||
let newSelectedSegmentIndex = selectedSegment + direction;
|
||||
|
||||
if (newSelectedSegmentIndex > numberOfSegments - 1) {
|
||||
newSelectedSegmentIndex = 1;
|
||||
} else if (newSelectedSegmentIndex === 0) {
|
||||
newSelectedSegmentIndex = numberOfSegments - 1;
|
||||
}
|
||||
|
||||
SegmentationService.jumpToSegmentCenter(
|
||||
segmentationId,
|
||||
newSelectedSegmentIndex,
|
||||
toolGroupId
|
||||
);
|
||||
setSelectedSegment(newSelectedSegmentIndex);
|
||||
},
|
||||
[selectedSegment]
|
||||
);
|
||||
|
||||
useEffect(() => {
|
||||
if (segIsLoading) {
|
||||
return;
|
||||
}
|
||||
|
||||
promptHydrateSEG({
|
||||
servicesManager,
|
||||
viewportIndex,
|
||||
segDisplaySet,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
}, [servicesManager, viewportIndex, segDisplaySet, segIsLoading]);
|
||||
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = SegmentationService.subscribe(
|
||||
SegmentationService.EVENTS.SEGMENTATION_PIXEL_DATA_CREATED,
|
||||
evt => {
|
||||
if (
|
||||
evt.segDisplaySet.displaySetInstanceUID ===
|
||||
segDisplaySet.displaySetInstanceUID
|
||||
) {
|
||||
setSegIsLoading(false);
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [segDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = SegmentationService.subscribe(
|
||||
SegmentationService.EVENTS.SEGMENT_PIXEL_DATA_CREATED,
|
||||
({ segmentIndex, numSegments }) => {
|
||||
setProcessingProgress({
|
||||
segmentIndex,
|
||||
totalSegments: numSegments,
|
||||
});
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [segDisplaySet]);
|
||||
|
||||
/**
|
||||
Cleanup the SEG viewport when the viewport is destroyed
|
||||
*/
|
||||
useEffect(() => {
|
||||
const onDisplaySetsRemovedSubscription = DisplaySetService.subscribe(
|
||||
DisplaySetService.EVENTS.DISPLAY_SETS_REMOVED,
|
||||
({ displaySetInstanceUIDs }) => {
|
||||
const activeViewport = viewports[activeViewportIndex];
|
||||
if (
|
||||
displaySetInstanceUIDs.includes(activeViewport.displaySetInstanceUID)
|
||||
) {
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportIndex: activeViewportIndex,
|
||||
displaySetInstanceUIDs: [],
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
onDisplaySetsRemovedSubscription.unsubscribe();
|
||||
};
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
let toolGroup = ToolGroupService.getToolGroup(toolGroupId);
|
||||
|
||||
if (toolGroup) {
|
||||
return;
|
||||
}
|
||||
|
||||
toolGroup = createSEGToolGroupAndAddTools(
|
||||
ToolGroupService,
|
||||
toolGroupId,
|
||||
extensionManager
|
||||
);
|
||||
|
||||
setToolGroupCreated(true);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
SegmentationService.removeSegmentationRepresentationFromToolGroup(
|
||||
toolGroupId
|
||||
);
|
||||
|
||||
ToolGroupService.destroyToolGroup(toolGroupId);
|
||||
};
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
setIsHydrated(segDisplaySet.isHydrated);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
SegmentationService.removeSegmentationRepresentationFromToolGroup(
|
||||
toolGroupId
|
||||
);
|
||||
referencedDisplaySetRef.current = null;
|
||||
};
|
||||
}, [segDisplaySet]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
if (
|
||||
!referencedDisplaySetRef.current ||
|
||||
referencedDisplaySet.displaySetInstanceUID !==
|
||||
referencedDisplaySetRef.current.displaySet.displaySetInstanceUID
|
||||
) {
|
||||
return null;
|
||||
}
|
||||
|
||||
if (children && children.length) {
|
||||
childrenWithProps = children.map((child, index) => {
|
||||
return (
|
||||
child &&
|
||||
React.cloneElement(child, {
|
||||
viewportIndex,
|
||||
key: index,
|
||||
})
|
||||
);
|
||||
});
|
||||
}
|
||||
|
||||
const {
|
||||
PatientID,
|
||||
PatientName,
|
||||
PatientSex,
|
||||
PatientAge,
|
||||
SliceThickness,
|
||||
ManufacturerModelName,
|
||||
StudyDate,
|
||||
SeriesDescription,
|
||||
SpacingBetweenSlices,
|
||||
SeriesNumber,
|
||||
} = referencedDisplaySetRef.current.metadata;
|
||||
|
||||
const onPillClick = () => {
|
||||
promptHydrateSEG({
|
||||
servicesManager,
|
||||
viewportIndex,
|
||||
segDisplaySet,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
<ViewportActionBar
|
||||
onDoubleClick={evt => {
|
||||
evt.stopPropagation();
|
||||
evt.preventDefault();
|
||||
}}
|
||||
onArrowsClick={onSegmentChange}
|
||||
getStatusComponent={() => {
|
||||
return _getStatusComponent({
|
||||
isHydrated,
|
||||
onPillClick,
|
||||
});
|
||||
}}
|
||||
studyData={{
|
||||
label: viewportLabel,
|
||||
useAltStyling: true,
|
||||
studyDate: formatDate(StudyDate),
|
||||
currentSeries: SeriesNumber,
|
||||
seriesDescription: `SEG Viewport ${SeriesDescription}`,
|
||||
patientInformation: {
|
||||
patientName: PatientName
|
||||
? OHIF.utils.formatPN(PatientName.Alphabetic)
|
||||
: '',
|
||||
patientSex: PatientSex || '',
|
||||
patientAge: PatientAge || '',
|
||||
MRN: PatientID || '',
|
||||
thickness: SliceThickness ? `${SliceThickness.toFixed(2)}mm` : '',
|
||||
spacing:
|
||||
SpacingBetweenSlices !== undefined
|
||||
? `${SpacingBetweenSlices.toFixed(2)}mm`
|
||||
: '',
|
||||
scanner: ManufacturerModelName || '',
|
||||
},
|
||||
}}
|
||||
/>
|
||||
|
||||
<div className="relative flex flex-row w-full h-full overflow-hidden">
|
||||
{segIsLoading && (
|
||||
<LoadingIndicatorProgress
|
||||
className="w-full h-full"
|
||||
progress={
|
||||
processingProgress.totalSegments !== null
|
||||
? ((processingProgress.segmentIndex + 1) /
|
||||
processingProgress.totalSegments) *
|
||||
100
|
||||
: null
|
||||
}
|
||||
textBlock={
|
||||
!processingProgress.totalSegments ? (
|
||||
<span className="text-white text-sm">Loading SEG ...</span>
|
||||
) : (
|
||||
<span className="text-white text-sm flex items-baseline space-x-2">
|
||||
<div>Loading Segment</div>
|
||||
<div className="w-3">{`${processingProgress.segmentIndex}`}</div>
|
||||
<div>/</div>
|
||||
<div>{`${processingProgress.totalSegments}`}</div>
|
||||
</span>
|
||||
)
|
||||
}
|
||||
/>
|
||||
)}
|
||||
{getCornerstoneViewport()}
|
||||
<div className="absolute w-full">
|
||||
{viewportDialogState.viewportIndex === viewportIndex && (
|
||||
<Notification
|
||||
id="viewport-notification"
|
||||
message={viewportDialogState.message}
|
||||
type={viewportDialogState.type}
|
||||
actions={viewportDialogState.actions}
|
||||
onSubmit={viewportDialogState.onSubmit}
|
||||
onOutsideClick={viewportDialogState.onOutsideClick}
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
{childrenWithProps}
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
OHIFCornerstoneSEGViewport.propTypes = {
|
||||
displaySets: PropTypes.arrayOf(PropTypes.object),
|
||||
viewportIndex: PropTypes.number.isRequired,
|
||||
dataSource: PropTypes.object,
|
||||
children: PropTypes.node,
|
||||
customProps: PropTypes.object,
|
||||
};
|
||||
|
||||
OHIFCornerstoneSEGViewport.defaultProps = {
|
||||
customProps: {},
|
||||
};
|
||||
|
||||
function _getReferencedDisplaySetMetadata(referencedDisplaySet) {
|
||||
const image0 = referencedDisplaySet.images[0];
|
||||
const referencedDisplaySetMetadata = {
|
||||
PatientID: image0.PatientID,
|
||||
PatientName: image0.PatientName,
|
||||
PatientSex: image0.PatientSex,
|
||||
PatientAge: image0.PatientAge,
|
||||
SliceThickness: image0.SliceThickness,
|
||||
StudyDate: image0.StudyDate,
|
||||
SeriesDescription: image0.SeriesDescription,
|
||||
SeriesInstanceUID: image0.SeriesInstanceUID,
|
||||
SeriesNumber: image0.SeriesNumber,
|
||||
ManufacturerModelName: image0.ManufacturerModelName,
|
||||
SpacingBetweenSlices: image0.SpacingBetweenSlices,
|
||||
};
|
||||
|
||||
return referencedDisplaySetMetadata;
|
||||
}
|
||||
|
||||
export default OHIFCornerstoneSEGViewport;
|
||||
@@ -0,0 +1,92 @@
|
||||
import React from 'react';
|
||||
import classNames from 'classnames';
|
||||
import { Icon, Tooltip } from '@ohif/ui';
|
||||
|
||||
import _hydrateSEGDisplaySet from '../utils/_hydrateSEG';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onPillClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => (
|
||||
<div
|
||||
className="flex items-center justify-center -mr-1 rounded-full"
|
||||
style={{
|
||||
width: '18px',
|
||||
height: '18px',
|
||||
backgroundColor: '#98e5c1',
|
||||
border: 'solid 1.5px #000000',
|
||||
}}
|
||||
>
|
||||
<Icon
|
||||
name="exclamation"
|
||||
style={{ color: '#000', width: '12px', height: '12px' }}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>This Segmentation is loaded in the segmentation panel</div>
|
||||
);
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<div
|
||||
className="flex items-center justify-center -mr-1 bg-white rounded-full group-hover:bg-customblue-200"
|
||||
style={{
|
||||
width: '18px',
|
||||
height: '18px',
|
||||
border: 'solid 1.5px #000000',
|
||||
}}
|
||||
>
|
||||
<Icon
|
||||
name="arrow-left"
|
||||
style={{ color: '#000', width: '14px', height: '14px' }}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>Click to load segmentation.</div>;
|
||||
}
|
||||
|
||||
const StatusPill = () => (
|
||||
<div
|
||||
className={classNames(
|
||||
'group relative flex items-center justify-center px-8 rounded-full cursor-default bg-customgreen-100',
|
||||
{
|
||||
'hover:bg-customblue-100': !isHydrated,
|
||||
'cursor-pointer': !isHydrated,
|
||||
}
|
||||
)}
|
||||
style={{
|
||||
height: '24px',
|
||||
width: '55px',
|
||||
}}
|
||||
onClick={() => {
|
||||
if (!isHydrated) {
|
||||
if (onPillClick) {
|
||||
onPillClick();
|
||||
}
|
||||
}
|
||||
}}
|
||||
>
|
||||
<div className="pr-1 text-base font-medium leading-none text-black">
|
||||
SEG
|
||||
</div>
|
||||
<StatusIcon />
|
||||
</div>
|
||||
);
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip content={<ToolTipMessage />} position="bottom-left">
|
||||
<StatusPill />
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusPill />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
Reference in new issue
Block a user