Our custom OHIF Viewer.
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Alireza 83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
.circleci feat: new Total Metabolic Tumor Volume tmtv (#2866) 2022-08-17 15:13:59 -04:00
.docker feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
.github update stale.yml to not close IDC related issues (#1573) 2020-03-29 16:10:11 -04:00
.netlify feat(cli): Ohif cli for modes and extensions modification (#2696) 2022-04-06 13:28:42 -04:00
.scripts fix(Studies): Qidosupportsincludefield should be true by default (#801) 2019-08-26 09:46:25 -04:00
.vscode feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
.webpack feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
extensions feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
modes feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
platform feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
testdata@1bca96aa2a Updating testdata, no functional change 2022-03-04 14:25:27 -05:00
.browserslistrc fix: measurementsAPI issue caused by production build (#842) 2019-09-04 13:53:13 -04:00
.codecov.yml ci: Try to fix codecov threshold (#976) 2019-09-30 12:24:14 +02:00
.dockerignore Add modified dockerfile from previous version 2019-09-25 23:16:00 -04:00
.env.example test: percy visual testing (#1053) 2019-10-15 14:52:23 -04:00
.eslintignore feat(cli): Ohif cli for modes and extensions modification (#2696) 2022-04-06 13:28:42 -04:00
.eslintrc.json feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
.gitattributes feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
.gitignore feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
.gitmodules feat(OHIFv3):Add static e2e data (#2665) 2022-01-31 14:29:20 -05:00
.node-version feat: new Total Metabolic Tumor Volume tmtv (#2866) 2022-08-17 15:13:59 -04:00
.prettierignore feat(cli): Ohif cli for modes and extensions modification (#2696) 2022-04-06 13:28:42 -04:00
.prettierrc feat: new Total Metabolic Tumor Volume tmtv (#2866) 2022-08-17 15:13:59 -04:00
aliases.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
babel.config.js fix: storybook with typescript (#2926) 2022-09-13 08:57:22 -04:00
CODE_OF_CONDUCT.md docs: code of conduct 2019-12-09 22:00:17 -05:00
CONTRIBUTING.md docs: contributing guidelines 2019-12-09 22:02:29 -05:00
Dockerfile feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
eslintAliasesResolver.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
jest.config.base.js feat: make hanging protocol work on displaySets instead of series (#2837) 2022-09-07 11:59:11 -04:00
jest.config.js chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
lerna.json add modes 2020-05-15 13:00:05 +01:00
LICENSE Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
netlify-lerna-cache.sh fix: Use same config for branch deploys as for deploy previews (#1893) 2020-07-22 19:41:10 +02:00
netlify-lerna-restore.sh fix: Use same config for branch deploys as for deploy previews (#1893) 2020-07-22 19:41:10 +02:00
package.json feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
postcss.config.js fix: measurementsAPI issue caused by production build (#842) 2019-09-04 13:53:13 -04:00
preinstall.js feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
README.md feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
runtime.txt feat(OHIFv3):Add static e2e data (#2665) 2022-01-31 14:29:20 -05:00
tsconfig.json feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
yarn.lock feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00

OHIF Medical Imaging Viewer

The OHIF Viewer is a zero-footprint medical image viewer provided by the Open Health Imaging Foundation (OHIF). It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support DICOMweb.


NPM version NPM downloads Pulls MIT License FOSSA Status

Netlify Status CircleCI codecov This project is using Percy.io for visual regression testing. All Contributors

About

The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.

Almost everything offers some degree of customization and configuration. If it doesn't support something you need, we accept pull requests and have an ever improving Extension System.

Why Choose Us

Community & Experience

The OHIF Viewer is a collaborative effort that has served as the basis for many active, production, and FDA Cleared medical imaging viewers. It benefits from our extensive community's collective experience, and from the sponsored contributions of individuals, research groups, and commercial organizations.

Built to Adapt

After more than 5-years of integrating with many companies and organizations, The OHIF Viewer has been rebuilt from the ground up to better address the varying workflow and configuration needs of its many users. All of the Viewer's core features are built using it's own extension system. The same extensibility that allows us to offer:

  • 2D and 3D medical image viewing
  • Multiplanar Reconstruction (MPR)
  • Maximum Intensity Project (MIP)
  • Whole slide microscopy viewing
  • PDF and Dicom Structured Report rendering
  • User Access Control (UAC)
  • Context specific toolbar and side panel content
  • and many others

Can be leveraged by you to customize the viewer for your workflow, and to add any new functionality you may need (and wish to maintain privately without forking).

Support

We offer support through GitHub Issues. You can:

For commercial support, academic collaborations, and answers to common questions; please read our documented FAQ.

Quick Start Deployment

This is only one of many ways to configure and deploy the OHIF Viewer. To learn more about your options, and how to choose the best one for your requirements, check out our deployment recipes and documentation.

The fastest and easiest way to get started is to include the OHIF Viewer with a script tag. In practice, this is as simple as:

  • Including the following dependencies with script tags:
  • Have an element with an ID of root on the page
  • Configure the OHIF Viewer at window.config:
window.config = {
  routerBasename: '/',
  servers: {
    dicomWeb: [
      {
        name: 'DCM4CHEE',
        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
        qidoSupportsIncludeField: true,
        imageRendering: 'wadors',
        thumbnailRendering: 'wadors',
      },
    ],
  },
};
  • Install the viewer: window.OHIFStandaloneViewer.installViewer(window.config);

This exact setup is demonstrated in this CodeSandbox and in our Embedding The Viewer deployment recipe.

Developing

Requirements

  • Yarn 1.17.3+
  • Node 10+
  • Yarn Workspaces should be enabled on your machine:
    • yarn config set workspaces-experimental true

Getting Started

  1. Fork this repository
  2. Clone your forked repository
    • git clone https://github.com/YOUR-USERNAME/Viewers.git
  3. Navigate to the cloned project's directory
  4. Add this repo as a remote named upstream
    • git remote add upstream https://github.com/OHIF/Viewers.git
  5. yarn install to restore dependencies and link projects

To Develop

From this repository's root directory:

# Enable Yarn Workspaces
yarn config set workspaces-experimental true

# Restore dependencies
yarn install

Commands

These commands are available from the root directory. Each project directory also supports a number of commands that can be found in their respective README.md and project.json files.

Yarn Commands Description
Develop
dev or start Default development experience for Viewer
dev:project <package-name> Replace with core, ui, i18n, cornerstone, vtk, etc.
test:unit Jest multi-project test runner; overall coverage
Deploy
build* Builds production output for our PWA Viewer

* - For more information on our different builds, check out our Deploy Docs

Projects

The OHIF Medical Image Viewing Platform is maintained as a monorepo. This means that this repository, instead of containing a single project, contains many projects. If you explore our project structure, you'll see the following:

.
├── extensions               #
│   ├── _example             # Skeleton of example extension
│   ├── default              #
│   ├── cornerstone       # image rendering and tools w/ Cornerstone
│   ├── cornerstone- dicom-sr #
│   └── measurement-tracking #
│
├── modes                    #
│   ├── _example             # Skeleton of example mode
│   ├── basic-dev-mode       # Basic development mode
│   └── longitudinal         # Longitudinal mode (measurement tracking)
│
├── platform                 #
│   ├── core                 # Business Logic
│   ├── i18n                 # Internationalization Support
│   ├── ui                   # React component library
│   └── viewer               # Connects platform and extension projects
│
├── ...                      # misc. shared configuration
├── lerna.json               # MonoRepo (Lerna) settings
├── package.json             # Shared devDependencies and commands
└── README.md                # This file

Want to better understand why and how we've structured this repository? Read more about it in our Architecture Documentation.

Platform

These projects comprise the

Name Description Links
@ohif/core Business logic and classes that model the data, services, and extensions that are framework agnostic NPM
@ohif/i18n Language files and small API for wrapping component/ui text for translations NPM
@ohif/viewer The OHIF Viewer. Where we consume and configure all platform library's and extensions NPM
@ohif/ui Reusable React components we consume and compose to build our Viewer's UI NPM

Extensions

This is a list of Extensions maintained by the OHIF Core team. It's possible to customize and configure these extensions, and you can even create your own. You can read more about extensions here.

Name Description Links
@ohif/extension-cornerstone 2D image viewing, annotation, and segementation tools NPM

Acknowledgments

To acknowledge the OHIF Viewer in an academic publication, please cite

Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer Research

Erik Ziegler, Trinity Urban, Danny Brown, James Petts, Steve D. Pieper, Rob Lewis, Chris Hafey, and Gordon J. Harris

JCO Clinical Cancer Informatics, no. 4 (2020), 336-345, DOI: 10.1200/CCI.19.00131

Open-Access on Pubmed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259879/

or, for v1, please cite:

LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer Imaging Research and Clinical Trials

Trinity Urban, Erik Ziegler, Rob Lewis, Chris Hafey, Cheryl Sadow, Annick D. Van den Abbeele and Gordon J. Harris

Cancer Research, November 1 2017 (77) (21) e119-e122 DOI: 10.1158/0008-5472.CAN-17-0334

Note: If you use or find this repository helpful, please take the time to star this repository on Github. This is an easy way for us to assess adoption and it can help us obtain future funding for the project.

This work is supported primarily by the National Institutes of Health, National Cancer Institute, Informatics Technology for Cancer Research (ITCR) program, under a grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460).

License

MIT © OHIF

FOSSA Status