feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)

* feat: add initial sop class handler for SEG * feat: move segmentation service * update segmentation service methods * fix: viewport data structure * feat: Add initial render for the DICOM SEG for each displaySet * fix: various wrong architectural dependencies between services * feat: initial separate SEG display in each viewport * feat: refactore viewport action bar * initial work for SEG hydration * fix: various bugs regarding drag and dropping different viewports * fix: rendering issues for multiple seg displaysets * fix: bugs for thumbnail and hydration * feat: fix the initial segment color * update after rebase * feat: initial design for the segmentation group table * feat: initial new design for the segmentation panel * feat: segmentation panel * feat: make segmentation appear on all related viewports * fix: segmentation load bug based on functional groups * initial work for segmentation crosshairs * fix: various stylings and functionality * fix: various stylings for the seg panel * fix: overflow styles * feat: add more ui components * feat: added segmentation config * feat: add jump to segment * feat: add jump to segment for DICOM SEG viewport * fix: bugs after rebase * feat: jump in segmentation viewport * fix: mpr support for seg * feat: add more icons * feat: new icons * feat: add new side panel * feat: add segmentation config * feat: add loading indicator to ohif * feat: make hanging protocols follow matching rules for viewports * feat: enhance drag and drop to be hanging protocol aware * fix: mpr restore previous layout * fix: crosshairs toggle * fix: add auth headers to the dicom loader via dicomwebclient * fix: bug for crosshairs toggle in mpr * fix: seg viewport reusing old toolGroup * feat: add loading animation with lottie * fix: various bugs for Segmentation hydration in mpr * feat: change outline alpha to outline opacity * feat: loading indicator for seg viewport * fix: various segmentation group styles * fix: local mode for seg * feat: add animation for the highlight * fix: loading indicatro to show segment indices * feat: enhance modality drop down ui * fix: panels * fix: download form * fix: layout shift in loading indicator * fix: loading indicator to have correct values * fix: update software number * fix: image jump between MPR and default * fix: segmentation cleanup and cine service cleanup * fix: segmentation toolgroup clena up * fix: highlight interval should not trigger again * fix: issue with multiframe sorting * rename: change onSeriesChange to onArrowsClick * fix: buttons for tmtv and layout shift * fix: various bugs wrt crosshairs * fix: crosshairs re init on reset camera * fix: middle slice calculation different from cs middle reset camera * fix: reset camera should reset viewport camera * fix: loading segments in MPR mode * fix: tmtv hp back to before * fix: layout shift * feat: orientation markers for volume viewport * fix: capture for volume viewports * fix: memory leak for back to worklist * fix: loading bar bg color * fix: side panel for only one panel * fix: react select style in production * fix: various styling for segmentation groups * fix: various ui styles * feat: add new segmentation config styles * fix: hover state for segmentation item * fix: side panel layout shift * temp add panels * try to fix scrollbar for thimbnail * fix: scroll not appearing for side panels * feat: changed styles for scrollbar * feat: add cpu fallback warning * fix: webworker destroy * fix: select styles * fix: orientation marker color and position * fix: capture screenshot for volume viewports * fix: hide segment visibility on mpr * fix: reloading an already loaded seg displayset * feat: add is equal * fix: mpr jump to measurements * apply review comments * fix: optimization for the segmentation load * fix: remove unnecessary context menu and hp service reset * fix: segmentation service wrt brush settings * feat: initial work for the stack synchronization * fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements * fix: various react proptypes * fix: thumbnails for the tmtv and change default props to default params * feat: make showing loading indicator configurable and add docs * bump versions and add more docs * fix demo * update cornerstone versions * apply review comments * feat: add reference lines * fix build * fix unit tests * add reference lines icon * fix: e2e tests * fix static wado config * docs: add segmentation service docs * fix: docker build * fix: keep camera and bump versions * Try re-enabling minification to fix deploy previews Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
1 parent 08c58b0634
commit 83ea228d86
@@ -0,0 +1,71 @@
+async function _hydrateSEGDisplaySet({
+  segDisplaySet,
+  viewportIndex,
+  toolGroupId,
+  servicesManager,
+}) {
+  const {
+    SegmentationService,
+    HangingProtocolService,
+    ViewportGridService,
+  } = servicesManager.services;
+
+  const displaySetInstanceUID = segDisplaySet.referencedDisplaySetInstanceUID;
+
+  let segmentationId = null;
+
+  // We need the hydration to notify panels about the new segmentation added
+  const suppressEvents = false;
+
+  segmentationId = await SegmentationService.createSegmentationForSEGDisplaySet(
+    segDisplaySet,
+    segmentationId,
+    suppressEvents
+  );
+
+  SegmentationService.hydrateSegmentation(segDisplaySet.displaySetInstanceUID);
+
+  const { viewports } = ViewportGridService.getState();
+
+  const updatedViewports = HangingProtocolService.getViewportsRequireUpdate(
+    viewportIndex,
+    displaySetInstanceUID
+  );
+
+  ViewportGridService.setDisplaySetsForViewports(updatedViewports);
+
+  // Todo: fix this after we have a better way for stack viewport segmentations
+
+  // check every viewport in the viewports to see if the displaySetInstanceUID
+  // is being displayed, if so we need to update the viewport to use volume viewport
+  // (if already is not using it) since Cornerstone3D currently only supports
+  // volume viewport for segmentation
+  viewports.forEach((viewport, index) => {
+    if (index === viewportIndex) {
+      return;
+    }
+
+    const shouldDisplaySeg = SegmentationService.shouldRenderSegmentation(
+      viewport.displaySetInstanceUIDs,
+      segDisplaySet.displaySetInstanceUID
+    );
+
+    if (shouldDisplaySeg) {
+      ViewportGridService.setDisplaySetsForViewport({
+        viewportIndex: index,
+        displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
+        viewportOptions: {
+          viewportType: 'volume',
+          toolGroupId,
+          initialImageOptions: {
+            preset: 'middle',
+          },
+        },
+      });
+    }
+  });
+
+  return true;
+}
+
+export default _hydrateSEGDisplaySet;
@@ -0,0 +1,34 @@
+function createSEGToolGroupAndAddTools(
+  ToolGroupService,
+  toolGroupId,
+  extensionManager
+) {
+  const utilityModule = extensionManager.getModuleEntry(
+    '@ohif/extension-cornerstone.utilityModule.tools'
+  );
+
+  const { toolNames, Enums } = utilityModule.exports;
+
+  const tools = {
+    active: [
+      {
+        toolName: toolNames.WindowLevel,
+        bindings: [{ mouseButton: Enums.MouseBindings.Primary }],
+      },
+      {
+        toolName: toolNames.Pan,
+        bindings: [{ mouseButton: Enums.MouseBindings.Auxiliary }],
+      },
+      {
+        toolName: toolNames.Zoom,
+        bindings: [{ mouseButton: Enums.MouseBindings.Secondary }],
+      },
+      { toolName: toolNames.StackScrollMouseWheel, bindings: [] },
+    ],
+    enabled: [{ toolName: toolNames.SegmentationDisplay }],
+  };
+
+  return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools, {});
+}
+
+export default createSEGToolGroupAndAddTools;
@@ -0,0 +1,70 @@
+import hydrateSEGDisplaySet from './_hydrateSEG';
+
+const RESPONSE = {
+  NO_NEVER: -1,
+  CANCEL: 0,
+  HYDRATE_SEG: 5,
+};
+
+function promptHydrateSEG({
+  servicesManager,
+  segDisplaySet,
+  viewportIndex,
+  toolGroupId = 'default',
+}) {
+  const { UIViewportDialogService } = servicesManager.services;
+
+  return new Promise(async function(resolve, reject) {
+    const promptResult = await _askHydrate(
+      UIViewportDialogService,
+      viewportIndex
+    );
+
+    if (promptResult === RESPONSE.HYDRATE_SEG) {
+      const isHydrated = await hydrateSEGDisplaySet({
+        segDisplaySet,
+        viewportIndex,
+        toolGroupId,
+        servicesManager,
+      });
+
+      resolve(isHydrated);
+    }
+  });
+}
+
+function _askHydrate(UIViewportDialogService, viewportIndex) {
+  return new Promise(function(resolve, reject) {
+    const message = 'Do you want to open this Segmentation?';
+    const actions = [
+      {
+        type: 'secondary',
+        text: 'No',
+        value: RESPONSE.CANCEL,
+      },
+      {
+        type: 'primary',
+        text: 'Yes',
+        value: RESPONSE.HYDRATE_SEG,
+      },
+    ];
+    const onSubmit = result => {
+      UIViewportDialogService.hide();
+      resolve(result);
+    };
+
+    UIViewportDialogService.show({
+      viewportIndex,
+      type: 'info',
+      message,
+      actions,
+      onSubmit,
+      onOutsideClick: () => {
+        UIViewportDialogService.hide();
+        resolve(RESPONSE.CANCEL);
+      },
+    });
+  });
+}
+
+export default promptHydrateSEG;