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feat(labelmap): Add labelmap segmentation in OHIF (#5158)

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rodrigobasilio2022 2025-06-26 12:59:44 -03:00 committed by GitHub
parent e07bb212bb
commit 9824f79177
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18 changed files with 850 additions and 824 deletions
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2
addOns/package.json
View File

@ -38,7 +38,7 @@
"resolutions": {
"**/@babel/runtime": "^7.20.13",
"commander": "8.3.0",
"dcmjs": "0.38.0",
"dcmjs": "^0.42.0",
"dicomweb-client": ">=0.10.4",
"nth-check": "^2.1.1",
"trim-newlines": "^5.0.0",

501
bun.lock
View File

@ -1,5 +1,5 @@
{
"lockfileVersion": 0,
"lockfileVersion": 1,
"workspaces": {
"": {
"name": "ohif-monorepo-root",
@ -137,12 +137,12 @@
"version": "3.11.0-beta.62",
"dependencies": {
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"@cornerstonejs/adapters": "^3.16.0",
"@cornerstonejs/ai": "^3.16.0",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/labelmap-interpolation": "^3.16.0",
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"@cornerstonejs/tools": "^3.16.0",
"@cornerstonejs/adapters": "^3.24.0",
"@cornerstonejs/ai": "^3.24.0",
"@cornerstonejs/core": "^3.24.0",
"@cornerstonejs/labelmap-interpolation": "^3.24.0",
"@cornerstonejs/polymorphic-segmentation": "^3.24.0",
"@cornerstonejs/tools": "^3.24.0",
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
"@kitware/vtk.js": "32.12.0",
"html2canvas": "^1.4.1",
@ -159,10 +159,10 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
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"@ohif/core": "platform/core",
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"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@ -176,16 +176,16 @@
"version": "3.11.0-beta.62",
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},
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"react": "^18.3.1",
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@ -202,10 +202,10 @@
"react-color": "^2.19.3",
},
"peerDependencies": {
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@ -219,16 +219,16 @@
"version": "3.11.0-beta.62",
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},
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"prop-types": "^15.6.2",
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@ -242,17 +242,17 @@
"version": "3.11.0-beta.62",
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"classnames": "^2.3.2",
},
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"@ohif/extension-measurement-tracking": "extensions/measurement-tracking",
"@ohif/ui": "platform/ui",
"dcmjs": "*",
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"dcmjs": "^0.42.0",
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@ -264,17 +264,17 @@
"version": "3.11.0-beta.62",
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"classnames": "^2.3.2",
},
"peerDependencies": {
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"@ohif/extension-cornerstone": "extensions/cornerstone",
"@ohif/extension-default": "extensions/default",
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"@ohif/core": "3.11.0-beta.62",
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"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@ -291,9 +291,9 @@
"lodash.uniqby": "^4.7.0",
},
"peerDependencies": {
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"dcmjs": "^0.42.0",
"dicomweb-client": "^0.10.4",
"prop-types": "^15.6.2",
"react": "^18.3.1",
@ -317,10 +317,10 @@
"mathjs": "^12.4.2",
},
"peerDependencies": {
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"@ohif/i18n": "platform/i18n",
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@ -337,9 +337,9 @@
"classnames": "^2.3.2",
},
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"dcmjs": "*",
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"prop-types": "^15.6.2",
@ -354,9 +354,9 @@
"classnames": "^2.3.2",
},
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@ -368,19 +368,19 @@
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},
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"@ohif/extension-cornerstone-dicom-sr": "extensions/cornerstone-dicom-sr",
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"@ohif/extension-cornerstone-dicom-sr": "3.11.0-beta.62",
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"classnames": "^2.3.2",
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@ -397,9 +397,9 @@
"classnames": "^2.3.2",
},
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"prop-types": "^15.6.2",
@ -414,9 +414,9 @@
"classnames": "^2.3.2",
},
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"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@ -430,11 +430,11 @@
"@babel/runtime": "^7.20.13",
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"@cornerstonejs/tools": "^3.16.0",
"@ohif/core": "platform/core",
"@ohif/extension-cornerstone": "extensions/cornerstone",
"@ohif/extension-default": "extensions/default",
"@ohif/i18n": "platform/i18n",
"@ohif/ui-next": "platform/ui-next",
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"@ohif/ui-next": "3.11.0-beta.62",
},
"devDependencies": {
"@babel/core": "7.24.7",
@ -487,12 +487,12 @@
"webpack-merge": "^5.7.3",
},
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"@ohif/extension-cornerstone": "extensions/cornerstone",
"@ohif/extension-cornerstone-dicom-sr": "extensions/cornerstone-dicom-sr",
"@ohif/extension-default": "extensions/default",
"@ohif/extension-dicom-pdf": "extensions/dicom-pdf",
"@ohif/extension-dicom-video": "extensions/dicom-video",
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},
},
"modes/basic-test-mode": {
@ -507,14 +507,14 @@
"webpack-merge": "^5.7.3",
},
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"@ohif/extension-cornerstone": "extensions/cornerstone",
"@ohif/extension-cornerstone-dicom-sr": "extensions/cornerstone-dicom-sr",
"@ohif/extension-default": "extensions/default",
"@ohif/extension-dicom-pdf": "extensions/dicom-pdf",
"@ohif/extension-dicom-video": "extensions/dicom-video",
"@ohif/extension-measurement-tracking": "extensions/measurement-tracking",
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},
"modes/longitudinal": {
@ -529,15 +529,15 @@
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},
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"@ohif/extension-cornerstone-dicom-rt": "extensions/cornerstone-dicom-rt",
"@ohif/extension-cornerstone-dicom-seg": "extensions/cornerstone-dicom-seg",
"@ohif/extension-cornerstone-dicom-sr": "extensions/cornerstone-dicom-sr",
"@ohif/extension-default": "extensions/default",
"@ohif/extension-dicom-pdf": "extensions/dicom-pdf",
"@ohif/extension-dicom-video": "extensions/dicom-video",
"@ohif/extension-measurement-tracking": "extensions/measurement-tracking",
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},
},
"modes/microscopy": {
@ -548,8 +548,8 @@
"i18next": "^17.0.3",
},
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"@ohif/extension-dicom-microscopy": "extensions/dicom-microscopy",
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},
},
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@ -563,12 +563,12 @@
"webpack-merge": "^5.7.3",
},
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"@ohif/extension-cornerstone-dicom-seg": "extensions/cornerstone-dicom-seg",
"@ohif/extension-cornerstone-dynamic-volume": "extensions/cornerstone-dynamic-volume",
"@ohif/extension-default": "extensions/default",
"@ohif/extension-tmtv": "extensions/tmtv",
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},
},
"modes/segmentation": {
@ -605,14 +605,14 @@
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},
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"@ohif/extension-cornerstone-dicom-rt": "extensions/cornerstone-dicom-rt",
"@ohif/extension-cornerstone-dicom-seg": "extensions/cornerstone-dicom-seg",
"@ohif/extension-cornerstone-dicom-sr": "extensions/cornerstone-dicom-sr",
"@ohif/extension-default": "extensions/default",
"@ohif/extension-dicom-pdf": "extensions/dicom-pdf",
"@ohif/extension-dicom-video": "extensions/dicom-video",
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},
},
"modes/tmtv": {
@ -627,13 +627,13 @@
"webpack-merge": "^5.7.3",
},
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"@ohif/extension-default": "extensions/default",
"@ohif/extension-dicom-pdf": "extensions/dicom-pdf",
"@ohif/extension-dicom-video": "extensions/dicom-video",
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},
},
"modes/usAnnotation": {
@ -643,9 +643,9 @@
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"@ohif/extension-ultrasound-pleura-bline": "extensions/usAnnotation",
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"@ohif/extension-ultrasound-pleura-bline": "3.11.0-beta.62",
"i18next": "^17.0.3",
},
"devDependencies": {
@ -684,33 +684,33 @@
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"@cornerstonejs/codec-openjpeg": "^1.2.4",
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"@cornerstonejs/dicom-image-loader": "^3.16.0",
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"@emotion/serialize": "^1.1.3",
"@ohif/core": "platform/core",
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"@ohif/extension-cornerstone-dicom-rt": "extensions/cornerstone-dicom-rt",
"@ohif/extension-cornerstone-dicom-seg": "extensions/cornerstone-dicom-seg",
"@ohif/extension-cornerstone-dicom-sr": "extensions/cornerstone-dicom-sr",
"@ohif/extension-default": "extensions/default",
"@ohif/extension-dicom-microscopy": "extensions/dicom-microscopy",
"@ohif/extension-dicom-pdf": "extensions/dicom-pdf",
"@ohif/extension-dicom-video": "extensions/dicom-video",
"@ohif/extension-test": "extensions/test-extension",
"@ohif/extension-ultrasound-pleura-bline": "extensions/usAnnotation",
"@ohif/i18n": "platform/i18n",
"@ohif/mode-basic-dev-mode": "modes/basic-dev-mode",
"@ohif/mode-longitudinal": "modes/longitudinal",
"@ohif/mode-microscopy": "modes/microscopy",
"@ohif/mode-test": "modes/basic-test-mode",
"@ohif/mode-ultrasound-pleura-bline": "modes/usAnnotation",
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"@ohif/ui-next": "platform/ui-next",
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@ -8041,6 +8058,8 @@
"pacote/npm-packlist/ignore-walk/minimatch": ["minimatch@9.0.5", "", { "dependencies": { "brace-expansion": "^2.0.1" } }, "sha512-G6T0ZX48xgozx7587koeX9Ys2NYy6Gmv//P89sEte9V9whIapMNF4idKxnW2QtCcLiTWlb/wfCabAtAFWhhBow=="],
"pacote/tar/fs-minipass/minipass": ["minipass@3.3.6", "", { "dependencies": { "yallist": "^4.0.0" } }, "sha512-DxiNidxSEK+tHG6zOIklvNOwm3hvCrbUrdtzY74U6HKTJxvIDfOUL5W5P2Ghd3DTkhhKPYGqeNUIh5qcM4YBfw=="],
"pkg-install/execa/cross-spawn/path-key": ["path-key@2.0.1", "", {}, "sha512-fEHGKCSmUSDPv4uoj8AlD+joPlq3peND+HRYyxFz4KPw4z926S/b8rIuFs2FYJg3BwsxJf6A9/3eIdLaYC+9Dw=="],
"pkg-install/execa/cross-spawn/semver": ["semver@5.7.2", "", { "bin": { "semver": "bin/semver" } }, "sha512-cBznnQ9KjJqU67B52RMC65CMarK2600WFnbkcaiwWq3xy/5haFJlshgnpjovMVJ+Hff49d8GEn0b87C5pDQ10g=="],

4
extensions/cornerstone-dicom-pmap/package.json
View File

@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.16.0",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/adapters": "^3.24.0",
"@cornerstonejs/core": "^3.24.0",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}

4
extensions/cornerstone-dicom-seg/package.json
View File

@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.16.0",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/adapters": "^3.24.0",
"@cornerstonejs/core": "^3.24.0",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}

2
extensions/cornerstone-dicom-seg/src/getSopClassHandlerModule.ts
View File

@ -7,7 +7,7 @@ import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
import { SOPClassHandlerId } from './id';
import { dicomlabToRGB } from './utils/dicomlabToRGB';
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4'];
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4', '1.2.840.10008.5.1.4.1.1.66.7'];
const loadPromises = {};

8
extensions/cornerstone-dicom-sr/package.json
View File

@ -38,7 +38,7 @@
"@ohif/extension-cornerstone": "3.11.0-beta.63",
"@ohif/extension-measurement-tracking": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@ -46,9 +46,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.16.0",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/tools": "^3.16.0",
"@cornerstonejs/adapters": "^3.24.0",
"@cornerstonejs/core": "^3.24.0",
"@cornerstonejs/tools": "^3.24.0",
"classnames": "^2.3.2"
}
}

6
extensions/cornerstone-dynamic-volume/package.json
View File

@ -34,7 +34,7 @@
"@ohif/extension-default": "3.11.0-beta.63",
"@ohif/i18n": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@ -42,8 +42,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/tools": "^3.16.0",
"@cornerstonejs/core": "^3.24.0",
"@cornerstonejs/tools": "^3.24.0",
"classnames": "^2.3.2"
}
}

16
extensions/cornerstone/package.json
View File

@ -38,10 +38,10 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.16.0",
"@cornerstonejs/dicom-image-loader": "^3.24.0",
"@ohif/core": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@ -51,12 +51,12 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.16.0",
"@cornerstonejs/ai": "^3.16.0",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/labelmap-interpolation": "^3.16.0",
"@cornerstonejs/polymorphic-segmentation": "^3.16.0",
"@cornerstonejs/tools": "^3.16.0",
"@cornerstonejs/adapters": "^3.24.0",
"@cornerstonejs/ai": "^3.24.0",
"@cornerstonejs/core": "^3.24.0",
"@cornerstonejs/labelmap-interpolation": "^3.24.0",
"@cornerstonejs/polymorphic-segmentation": "^3.24.0",
"@cornerstonejs/tools": "^3.24.0",
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
"@kitware/vtk.js": "32.12.0",
"html2canvas": "^1.4.1",

2
extensions/default/package.json
View File

@ -34,7 +34,7 @@
"peerDependencies": {
"@ohif/core": "3.11.0-beta.63",
"@ohif/i18n": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicomweb-client": "^0.10.4",
"prop-types": "^15.6.2",
"react": "^18.3.1",

2
extensions/dicom-pdf/package.json
View File

@ -32,7 +32,7 @@
"peerDependencies": {
"@ohif/core": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",

2
extensions/dicom-video/package.json
View File

@ -32,7 +32,7 @@
"peerDependencies": {
"@ohif/core": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",

6
extensions/measurement-tracking/package.json
View File

@ -32,14 +32,14 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/tools": "^3.16.0",
"@cornerstonejs/core": "^3.24.0",
"@cornerstonejs/tools": "^3.24.0",
"@ohif/core": "3.11.0-beta.63",
"@ohif/extension-cornerstone-dicom-sr": "3.11.0-beta.63",
"@ohif/extension-default": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"classnames": "^2.3.2",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"lodash.debounce": "^4.0.8",
"prop-types": "^15.6.2",
"react": "^18.3.1",

2
extensions/test-extension/package.json
View File

@ -32,7 +32,7 @@
"peerDependencies": {
"@ohif/core": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "0.38.0",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",

2
extensions/tmtv/package.json
View File

@ -32,7 +32,7 @@
"peerDependencies": {
"@ohif/core": "3.11.0-beta.63",
"@ohif/ui": "3.11.0-beta.63",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",

4
platform/app/package.json
View File

@ -53,7 +53,7 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.16.0",
"@cornerstonejs/dicom-image-loader": "^3.24.0",
"@emotion/serialize": "^1.1.3",
"@ohif/core": "3.11.0-beta.63",
"@ohif/extension-cornerstone": "3.11.0-beta.63",
@ -79,7 +79,7 @@
"classnames": "^2.3.2",
"core-js": "*",
"cornerstone-math": "^0.1.9",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"detect-gpu": "^4.0.16",
"dicom-parser": "^1.8.9",
"dotenv-webpack": "^1.7.0",

6
platform/core/package.json
View File

@ -37,15 +37,15 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/core": "^3.16.0",
"@cornerstonejs/dicom-image-loader": "^3.16.0",
"@cornerstonejs/core": "^3.24.0",
"@cornerstonejs/dicom-image-loader": "^3.24.0",
"@ohif/ui": "3.11.0-beta.63",
"cornerstone-math": "0.1.9",
"dicom-parser": "^1.8.21"
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"dcmjs": "*",
"dcmjs": "^0.42.0",
"dicomweb-client": "^0.10.4",
"gl-matrix": "^3.4.3",
"immutability-helper": "^3.1.1",

1
platform/core/src/utils/sopClassDictionary.js
View File

@ -55,6 +55,7 @@ export const sopClassDictionary = {
SpatialFiducialsStorage: '1.2.840.10008.5.1.4.1.1.66.2',
DeformableSpatialRegistrationStorage: '1.2.840.10008.5.1.4.1.1.66.3',
SegmentationStorage: '1.2.840.10008.5.1.4.1.1.66.4',
LabelmapSegmentationStorage: '1.2.840.10008.5.1.4.1.1.66.7',
SurfaceSegmentationStorage: '1.2.840.10008.5.1.4.1.1.66.5',
RealWorldValueMappingStorage: '1.2.840.10008.5.1.4.1.1.67',
SurfaceScanMeshStorage: '1.2.840.10008.5.1.4.1.1.68.1',

1104
yarn.lock
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