feat: Added support for TID 1410 relationship types (#2942)
* Added support for TID 1410 relationship types * Added POLYLINE rendering from ladeirarodolfo to PR * Rolled Dockerfile back to master to make merge easier * Minor cleanup
This commit is contained in:
Sean Doyle
GitHub
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7f770e4fb6
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af09578544
@ -16,6 +16,7 @@ const sopClassUids = [
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'1.2.840.10008.5.1.4.1.1.88.11', //BASIC_TEXT_SR:
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'1.2.840.10008.5.1.4.1.1.88.22', //ENHANCED_SR:
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'1.2.840.10008.5.1.4.1.1.88.33', //COMPREHENSIVE_SR:
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'1.2.840.10008.5.1.4.1.1.88.34', //COMPREHENSIVE_3D_SR:
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];
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const CORNERSTONE_3D_TOOLS_SOURCE_NAME = 'Cornerstone3DTools';
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@ -44,6 +45,7 @@ const CodingSchemeDesignators = {
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const RELATIONSHIP_TYPE = {
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INFERRED_FROM: 'INFERRED FROM',
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CONTAINS: 'CONTAINS',
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};
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const CORNERSTONE_FREETEXT_CODE_VALUE = 'CORNERSTONEFREETEXT';
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@ -376,7 +378,6 @@ function _processMeasurement(mergedContentSequence) {
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function _processTID1410Measurement(mergedContentSequence) {
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// Need to deal with TID 1410 style measurements, which will have a SCOORD or SCOORD3D at the top level,
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// And non-geometric representations where each NUM has "INFERRED FROM" SCOORD/SCOORD3D
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// TODO -> Look at RelationshipType => Contains means
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const graphicItem = mergedContentSequence.find(
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group => group.ValueType === 'SCOORD'
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@ -536,9 +537,14 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
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function _getCoordsFromSCOORDOrSCOORD3D(item) {
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const { ValueType, RelationshipType, GraphicType, GraphicData } = item;
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if (RelationshipType !== RELATIONSHIP_TYPE.INFERRED_FROM) {
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if (
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!(
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RelationshipType == RELATIONSHIP_TYPE.INFERRED_FROM ||
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RelationshipType == RELATIONSHIP_TYPE.CONTAINS
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)
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) {
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console.warn(
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`Relationshiptype === ${RelationshipType}. Cannot deal with NON TID-1400 SCOORD group with RelationshipType !== "INFERRED FROM."`
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`Relationshiptype === ${RelationshipType}. Cannot deal with NON TID-1400 SCOORD group with RelationshipType !== "INFERRED FROM" or "CONTAINS"`
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);
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return;
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@ -597,12 +603,18 @@ function _getReferencedImagesList(ImagingMeasurementReportContentSequence) {
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_getSequenceAsArray(ImageLibraryGroup.ContentSequence).forEach(item => {
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const { ReferencedSOPSequence } = item;
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const {
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ReferencedSOPClassUID,
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ReferencedSOPInstanceUID,
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} = ReferencedSOPSequence;
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referencedImages.push({ ReferencedSOPClassUID, ReferencedSOPInstanceUID });
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if (item.hasOwnProperty('ReferencedSOPClassUID')) {
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const {
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ReferencedSOPClassUID,
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ReferencedSOPInstanceUID,
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} = ReferencedSOPSequence;
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referencedImages.push({
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ReferencedSOPClassUID,
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ReferencedSOPInstanceUID,
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});
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}
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});
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return referencedImages;
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@ -99,7 +99,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
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const annotation = filteredAnnotations[i];
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const annotationUID = annotation.annotationUID;
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const { renderableData } = annotation.data.cachedStats;
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const { label, cachedStats } = annotation.data;
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const { cachedStats } = annotation.data;
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const { referencedImageId } = annotation.metadata;
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styleSpecifier.annotationUID = annotationUID;
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@ -121,22 +121,30 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
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const renderableDataForGraphicType = renderableData[GraphicType];
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let renderMethod;
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let renderTextBox;
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let canvasCoordinatesAdapter;
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switch (GraphicType) {
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case SCOORD_TYPES.POINT:
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renderMethod = this.renderPoint;
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renderTextBox = this.renderTextBox;
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break;
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case SCOORD_TYPES.MULTIPOINT:
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renderMethod = this.renderMultipoint;
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renderTextBox = this.renderTextBox;
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break;
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case SCOORD_TYPES.POLYLINE:
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renderMethod = this.renderPolyLine;
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break;
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case SCOORD_TYPES.CIRCLE:
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renderMethod = this.renderEllipse;
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renderTextBox = this.renderTextBox;
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break;
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case SCOORD_TYPES.ELLIPSE:
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renderMethod = this.renderEllipse;
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renderTextBox = this.renderTextBox;
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canvasCoordinatesAdapter =
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utilities.math.ellipse.getCanvasEllipseCorners;
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break;
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default:
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throw new Error(`Unsupported GraphicType: ${GraphicType}`);
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@ -151,60 +159,18 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
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options
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);
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if (!canvasCoordinates) {
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return;
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}
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const textLines = this._getTextBoxLinesFromLabels(label);
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let canvasCornersToUseForTextBox = canvasCoordinates;
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if (GraphicType === SCOORD_TYPES.ELLIPSE) {
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canvasCornersToUseForTextBox = utilities.math.ellipse.getCanvasEllipseCorners(
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canvasCoordinates
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if (typeof renderTextBox === 'function') {
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renderTextBox.call(
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this,
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svgDrawingHelper,
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viewport,
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canvasCoordinates,
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canvasCoordinatesAdapter,
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annotation,
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styleSpecifier,
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options
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);
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}
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const canvasTextBoxCoords = utilities.drawing.getTextBoxCoordsCanvas(
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canvasCornersToUseForTextBox
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);
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annotation.data.handles.textBox.worldPosition = viewport.canvasToWorld(
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canvasTextBoxCoords
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);
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const textBoxPosition = viewport.worldToCanvas(
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annotation.data.handles.textBox.worldPosition
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);
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const textBoxUID = '1';
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const textBoxOptions = this.getLinkedTextBoxStyle(
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styleSpecifier,
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annotation
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);
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const boundingBox = drawing.drawLinkedTextBox(
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svgDrawingHelper,
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annotationUID,
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textBoxUID,
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textLines,
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textBoxPosition,
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canvasCoordinates,
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{},
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{
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...textBoxOptions,
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color,
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}
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);
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const { x: left, y: top, width, height } = boundingBox;
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annotation.data.handles.textBox.worldBoundingBox = {
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topLeft: viewport.canvasToWorld([left, top]),
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topRight: viewport.canvasToWorld([left + width, top]),
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bottomLeft: viewport.canvasToWorld([left, top + height]),
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bottomRight: viewport.canvasToWorld([left + width, top + height]),
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};
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});
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}
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};
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@ -217,28 +183,32 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
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referencedImageId,
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options
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) {
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// Todo: this needs to use the drawPolyLine from cs3D since it is implemented
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// now, before it was implemented with a loop over drawLine which is hacky
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const drawingOptions = {
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color: options.color,
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width: options.lineWidth,
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};
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let canvasCoordinates;
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renderableData.map((data, index) => {
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canvasCoordinates = data.map(p => viewport.worldToCanvas(p));
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const lineUID = `${index}`;
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if (canvasCoordinates.length === 2) {
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const lineUID = `${index}`;
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drawing.drawLine(
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svgDrawingHelper,
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annotationUID,
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lineUID,
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canvasCoordinates[0],
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canvasCoordinates[1],
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{
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color: options.color,
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width: options.lineWidth,
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}
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drawingOptions
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);
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} else {
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throw new Error('Drawing polyline for SR not yet implemented');
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drawing.drawPolyline(
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svgDrawingHelper,
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annotationUID,
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lineUID,
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canvasCoordinates,
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drawingOptions
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);
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}
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});
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@ -367,6 +337,71 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
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return canvasCoordinates;
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}
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renderTextBox(
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svgDrawingHelper,
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viewport,
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canvasCoordinates,
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canvasCoordinatesAdapter,
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annotation,
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styleSpecifier,
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options = {}
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) {
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if (!canvasCoordinates || !annotation) {
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return;
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}
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const { annotationUID, data = {} } = annotation;
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const { label } = data;
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const { color } = options;
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let adaptedCanvasCoordinates = canvasCoordinates;
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// adapt coordinates if there is an adapter
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if (typeof canvasCoordinatesAdapter === 'function') {
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adaptedCanvasCoordinates = canvasCoordinatesAdapter(canvasCoordinates);
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}
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const textLines = this._getTextBoxLinesFromLabels(label);
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const canvasTextBoxCoords = utilities.drawing.getTextBoxCoordsCanvas(
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adaptedCanvasCoordinates
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);
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annotation.data.handles.textBox.worldPosition = viewport.canvasToWorld(
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canvasTextBoxCoords
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);
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const textBoxPosition = viewport.worldToCanvas(
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annotation.data.handles.textBox.worldPosition
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);
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const textBoxUID = '1';
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const textBoxOptions = this.getLinkedTextBoxStyle(
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styleSpecifier,
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annotation
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);
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const boundingBox = drawing.drawLinkedTextBox(
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svgDrawingHelper,
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annotationUID,
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textBoxUID,
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textLines,
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textBoxPosition,
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canvasCoordinates,
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{},
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{
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...textBoxOptions,
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color,
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}
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);
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const { x: left, y: top, width, height } = boundingBox;
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annotation.data.handles.textBox.worldBoundingBox = {
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topLeft: viewport.canvasToWorld([left, top]),
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topRight: viewport.canvasToWorld([left + width, top]),
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bottomLeft: viewport.canvasToWorld([left, top + height]),
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bottomRight: viewport.canvasToWorld([left + width, top + height]),
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};
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}
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}
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const SHORT_HAND_MAP = {
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