fix(segmentation): failing to render SEG because it was on default tool group (#3222)
* fix: Segmentation service fixes for secondary volumes * Remove toolgroupID in promptSeg
This commit is contained in:
Bill Wallace
GitHub
parent
3f20b41c17
commit
b7fff77e17
@ -59,7 +59,7 @@
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"babel-eslint": "^8.0.3",
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"babel-loader": "^8.0.0-beta.4",
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"clean-webpack-plugin": "^4.0.0",
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"copy-webpack-plugin": "^10.2.0",
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"copy-webpack-plugin": "^11.0.0",
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"cross-env": "^7.0.3",
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"dotenv": "^14.1.0",
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"eslint": "^5.0.1",
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@ -203,7 +203,7 @@ export default function PanelSegmentation({
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showAddSegmentation={false}
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segmentations={segmentations}
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isMinimized={isMinimized}
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activeSegmentationId={selectedSegmentationId}
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activeSegmentationId={selectedSegmentationId || ''}
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onSegmentationClick={onSegmentationClick}
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onSegmentationDelete={onSegmentationDelete}
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onSegmentationEdit={onSegmentationEdit}
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@ -1,7 +1,6 @@
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async function _hydrateSEGDisplaySet({
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segDisplaySet,
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viewportIndex,
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toolGroupId,
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servicesManager,
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}) {
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const {
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@ -55,8 +54,6 @@ async function _hydrateSEGDisplaySet({
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viewportIndex: index,
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displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
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viewportOptions: {
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viewportType: 'volume',
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toolGroupId,
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initialImageOptions: {
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preset: 'middle',
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},
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@ -10,13 +10,12 @@ function promptHydrateSEG({
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servicesManager,
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segDisplaySet,
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viewportIndex,
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toolGroupId = 'default',
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}) {
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const { UIViewportDialogService } = servicesManager.services;
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const { uiViewportDialogService } = servicesManager.services;
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return new Promise(async function(resolve, reject) {
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const promptResult = await _askHydrate(
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UIViewportDialogService,
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uiViewportDialogService,
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viewportIndex
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);
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@ -24,7 +23,6 @@ function promptHydrateSEG({
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const isHydrated = await hydrateSEGDisplaySet({
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segDisplaySet,
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viewportIndex,
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toolGroupId,
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servicesManager,
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});
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@ -33,7 +31,7 @@ function promptHydrateSEG({
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});
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}
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function _askHydrate(UIViewportDialogService, viewportIndex) {
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function _askHydrate(uiViewportDialogService, viewportIndex) {
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return new Promise(function(resolve, reject) {
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const message = 'Do you want to open this Segmentation?';
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const actions = [
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@ -49,18 +47,18 @@ function _askHydrate(UIViewportDialogService, viewportIndex) {
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},
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];
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const onSubmit = result => {
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UIViewportDialogService.hide();
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uiViewportDialogService.hide();
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resolve(result);
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};
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UIViewportDialogService.show({
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uiViewportDialogService.show({
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viewportIndex,
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type: 'info',
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message,
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actions,
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onSubmit,
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onOutsideClick: () => {
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UIViewportDialogService.hide();
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uiViewportDialogService.hide();
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resolve(RESPONSE.CANCEL);
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},
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});
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@ -235,6 +235,8 @@ function OHIFCornerstoneSEGViewport(props) {
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return;
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}
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// This creates a custom tool group which has the lifetime of this view
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// only, and does NOT interfere with currently displayed segmentations.
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toolGroup = createSEGToolGroupAndAddTools(
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toolGroupService,
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toolGroupId,
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@ -249,6 +251,7 @@ function OHIFCornerstoneSEGViewport(props) {
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toolGroupId
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);
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// Only destroy the viewport specific implementation
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toolGroupService.destroyToolGroup(toolGroupId);
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};
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}, []);
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@ -298,14 +301,12 @@ function OHIFCornerstoneSEGViewport(props) {
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StudyDate,
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SeriesDescription,
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SpacingBetweenSlices,
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SeriesNumber,
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} = referencedDisplaySetRef.current.metadata;
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const onStatusClick = async () => {
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const isHydrated = await hydrateSEGDisplaySet({
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segDisplaySet,
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viewportIndex,
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toolGroupId,
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servicesManager,
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});
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@ -45,8 +45,8 @@
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"classnames": "^2.3.2",
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"@cornerstonejs/adapters": "^0.3.1",
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"@cornerstonejs/core": "^0.32.0",
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"@cornerstonejs/tools": "^0.48.0"
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"@cornerstonejs/adapters": "^0.4.1",
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"@cornerstonejs/core": "^0.33.2",
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"@cornerstonejs/tools": "^0.50.2"
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}
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}
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@ -43,10 +43,10 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.20.13",
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"@cornerstonejs/adapters": "^0.3.1",
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"@cornerstonejs/core": "^0.32.0",
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"@cornerstonejs/streaming-image-volume-loader": "^0.13.0",
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"@cornerstonejs/tools": "^0.48.0",
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"@cornerstonejs/adapters": "^0.4.1",
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"@cornerstonejs/core": "^0.33.2",
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"@cornerstonejs/streaming-image-volume-loader": "^0.14.1",
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"@cornerstonejs/tools": "^0.50.2",
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"@kitware/vtk.js": "26.5.6",
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"html2canvas": "^1.4.1",
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"lodash.debounce": "4.0.8",
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@ -32,8 +32,8 @@
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"peerDependencies": {
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"@ohif/core": "^3.0.0",
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"classnames": "^2.3.2",
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"@cornerstonejs/core": "^0.32.0",
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"@cornerstonejs/tools": "^0.48.0",
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"@cornerstonejs/core": "^0.33.2",
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"@cornerstonejs/tools": "^0.50.2",
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"@ohif/extension-cornerstone-dicom-sr": "^3.0.0",
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"dcmjs": "^0.29.4",
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"prop-types": "^15.6.2",
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@ -234,19 +234,16 @@ export default class CustomizationService extends PubSubService {
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}
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/**
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* A single reference is either an an array, or a single customization value,
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* whose id is the id in the object, or the parent id.
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* This allows for general use to register customizationModule entries.
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* A single reference is either an string to be loaded from a module,
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* or a customization itself.
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*/
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addReference(
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value?: Obj | Obj[] | string,
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isGlobal = true,
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id?: string
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): void {
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addReference(value?: Obj | string, isGlobal = true, id?: string): void {
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if (!value) return;
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if (typeof value === 'string') {
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const extensionValue = this.findExtensionValue(value);
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this.addReferences(extensionValue);
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// The child of a reference is only a set of references when an array,
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// so call the addReference direct. It could be a secondary reference perhaps
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this.addReference(extensionValue);
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} else if (Array.isArray(value)) {
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this.addReferences(value, isGlobal);
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} else {
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@ -258,10 +255,10 @@ export default class CustomizationService extends PubSubService {
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}
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}
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/** References are:
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* list of customizations, added in order
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* object containing a customization id and value
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* This format allows for the original whitelist format.
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/**
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* Customizations can be specified as an array of strings or customizations,
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* or as an object whose key is the reference id, and the value is the string
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* or customization.
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*/
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addReferences(references?: Obj | Obj[], isGlobal = true): void {
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if (!references) return;
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@ -7,7 +7,7 @@
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* @property {boolean} [viewportIndex=false] Modal is dismissible via the esc key.
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*/
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const name = 'UIViewportDialogService';
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const name = 'uiViewportDialogService';
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const publicAPI = {
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name,
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@ -77,6 +77,7 @@ function setServiceImplementation({
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export default {
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REGISTRATION: {
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name,
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altName: 'UIViewportDialogService',
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create: ({ configuration = {} }) => {
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return publicAPI;
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},
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@ -23,6 +23,7 @@ export default interface Services {
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toolGroupService?: Record<string, unknown>;
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uiNotificationService?: Record<string, unknown>;
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uiModalService?: Record<string, unknown>;
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uiViewportDialogService?: Record<string, unknown>;
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viewportGridService?: ViewportGridService;
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syncGroupService?: Record<string, unknown>;
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cornerstoneCacheService?: Record<string, unknown>;
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@ -82,30 +82,29 @@ const SegmentationGroupTable = ({
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activeSegmentIndex,
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} = segmentation;
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return (
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<SegmentationGroup
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id={id}
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label={label}
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isMinimized={isMinimized[id]}
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segments={segments}
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showAddSegment={showAddSegment}
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segmentCount={segmentCount}
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isActive={isActive}
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isVisible={isVisible}
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onSegmentColorClick={onSegmentColorClick}
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onSegmentationClick={() => onSegmentationClick(id)}
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activeSegmentIndex={activeSegmentIndex}
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onToggleMinimizeSegmentation={onToggleMinimizeSegmentation}
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onSegmentationEdit={onSegmentationEdit}
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onSegmentationDelete={onSegmentationDelete}
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onSegmentClick={onSegmentClick}
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onSegmentEdit={onSegmentEdit}
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onToggleSegmentVisibility={onToggleSegmentVisibility}
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onToggleSegmentationVisibility={
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onToggleSegmentationVisibility
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}
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onSegmentAdd={onSegmentAdd}
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showSegmentDelete={false}
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/>
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<SegmentationGroup
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id={id}
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key={id}
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label={label}
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isMinimized={isMinimized[id]}
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segments={segments}
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showAddSegment={showAddSegment}
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segmentCount={segmentCount}
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isActive={isActive}
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isVisible={isVisible}
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onSegmentColorClick={onSegmentColorClick}
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onSegmentationClick={() => onSegmentationClick(id)}
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activeSegmentIndex={activeSegmentIndex}
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onToggleMinimizeSegmentation={onToggleMinimizeSegmentation}
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onSegmentationEdit={onSegmentationEdit}
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onSegmentationDelete={onSegmentationDelete}
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onSegmentClick={onSegmentClick}
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onSegmentEdit={onSegmentEdit}
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onToggleSegmentVisibility={onToggleSegmentVisibility}
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onToggleSegmentationVisibility={onToggleSegmentationVisibility}
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onSegmentAdd={onSegmentAdd}
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showSegmentDelete={false}
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/>
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);
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})}
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</div>
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@ -35,7 +35,7 @@ const setHeaders = (res, path) => {
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}
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if (path.indexOf('.pdf') !== -1) {
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res.setHeader('Content-Type', 'application/pdf');
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} else if (path.indexOf('/frames') !== -1) {
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} else if (path.indexOf('frames') !== -1) {
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res.setHeader('Content-Type', 'multipart/related');
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} else {
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res.setHeader('Content-Type', 'application/json');
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@ -85,8 +85,13 @@ describe('OHIF Cornerstone Toolbar', () => {
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.trigger('mousemove', 'right', { buttons: 1, force: true })
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.trigger('mouseup', { buttons: 1 });
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const expectedText = 'W:1930L:479';
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cy.get('@viewportInfoTopLeft').should('have.text', expectedText);
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// The exact text is slightly dependent on the viewport resolution, so leave a range
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cy.get('@viewportInfoTopLeft').should($txt => {
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const text = $txt.text();
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expect(text)
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.to.include('W:193')
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.include('L:479');
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});
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});
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it('checks if Pan tool will move the image inside the viewport', () => {
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@ -14,8 +14,9 @@ describe('OHIF MPR', () => {
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});
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it('should go MPR for reconstructible displaySets and come back', () => {
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cy.wait(1000);
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cy.wait(250);
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cy.get(':nth-child(3) > [data-cy="study-browser-thumbnail"]').dblclick();
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cy.wait(250);
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cy.get('[data-cy="MPR"]').click();
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@ -94,7 +95,7 @@ describe('OHIF MPR', () => {
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});
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it('should correctly render Crosshairs for MPR', () => {
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cy.wait(1000);
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cy.wait(250);
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cy.get('[data-cy="Crosshairs"]').click();
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cy.window()
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@ -111,7 +112,7 @@ describe('OHIF MPR', () => {
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cy.get('[data-cy="MPR"]').click();
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cy.get('[data-cy="Crosshairs"]').click();
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cy.wait(1000);
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cy.wait(250);
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// check cornerstone to see if each has crosshairs
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// we can later do visual testing to match the images with a baseline
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@ -5,6 +5,7 @@ window.config = {
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showStudyList: true,
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// below flag is for performance reasons, but it might not work for all servers
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omitQuotationForMultipartRequest: true,
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maxNumberOfWebWorkers: 3,
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showWarningMessageForCrossOrigin: false,
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showCPUFallbackMessage: false,
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// filterQueryParam: false,
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@ -9,7 +9,7 @@ window.config = {
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},
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],
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extensions: [],
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modes: [],
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modes: ['@ohif/mode-test'],
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showStudyList: true,
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maxNumberOfWebWorkers: 4,
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// below flag is for performance reasons, but it might not work for all servers
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75
yarn.lock
75
yarn.lock
@ -1407,10 +1407,10 @@
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resolved "https://registry.npmjs.org/@colors/colors/-/colors-1.5.0.tgz#bb504579c1cae923e6576a4f5da43d25f97bdbd9"
|
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|
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"@cornerstonejs/adapters@^0.3.1":
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version "0.3.1"
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resolved "https://registry.yarnpkg.com/@cornerstonejs/adapters/-/adapters-0.3.1.tgz#50cfaf3de3c5a55f22f7fae1a9f6584a1c343ffa"
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|
||||
"@cornerstonejs/adapters@^0.4.1":
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|
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dependencies:
|
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"@babel/runtime-corejs2" "^7.17.8"
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dcmjs "^0.29.4"
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@ -1443,28 +1443,36 @@
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resolved "https://registry.npmjs.org/@cornerstonejs/codec-openjph/-/codec-openjph-2.4.2.tgz#e96721d56f6ec96f7f95c16321d88cc8467d8d81"
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||||
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|
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|
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|
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|
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|
||||
dependencies:
|
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detect-gpu "^4.0.45"
|
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lodash.clonedeep "4.5.0"
|
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|
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"@cornerstonejs/streaming-image-volume-loader@^0.13.0":
|
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version "0.13.0"
|
||||
resolved "https://registry.npmjs.org/@cornerstonejs/streaming-image-volume-loader/-/streaming-image-volume-loader-0.13.0.tgz#0b27bde776585274b6f5ab98eb2366711f8fc878"
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|
||||
version "0.33.2"
|
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|
||||
dependencies:
|
||||
"@cornerstonejs/core" "^0.32.0"
|
||||
detect-gpu "^4.0.45"
|
||||
lodash.clonedeep "4.5.0"
|
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|
||||
"@cornerstonejs/streaming-image-volume-loader@^0.14.1":
|
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version "0.14.1"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/streaming-image-volume-loader/-/streaming-image-volume-loader-0.14.1.tgz#9830e1cbb65aa0e050336b7f5cb9c81d23e09fc5"
|
||||
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|
||||
dependencies:
|
||||
"@cornerstonejs/core" "^0.33.1"
|
||||
cornerstone-wado-image-loader "^4.10.0"
|
||||
|
||||
"@cornerstonejs/tools@^0.48.0":
|
||||
version "0.48.0"
|
||||
resolved "https://registry.npmjs.org/@cornerstonejs/tools/-/tools-0.48.0.tgz#c881866a58dd7fe5338256166630e3de633b14e7"
|
||||
integrity sha512-uMrfY84m1bzVQ8I6HAkmKjZDuB3cHy9T7SWiOhXqfQGdcftkEJXYzXA6WbXDbsG8LpslnSv79Ovbx1uvH2GrWQ==
|
||||
"@cornerstonejs/tools@^0.50.2":
|
||||
version "0.50.2"
|
||||
resolved "https://registry.yarnpkg.com/@cornerstonejs/tools/-/tools-0.50.2.tgz#0134b21016ec64290b8f9a43ac1a485654ed86eb"
|
||||
integrity sha512-MedGsiisDjd2eOewhojwPpWReKM13x1krKIhPNL3hi8rZjV57T8RTpWfztxSjuUpOvapmlJXutrDPuLSUXs01g==
|
||||
dependencies:
|
||||
"@cornerstonejs/core" "^0.32.0"
|
||||
"@cornerstonejs/core" "^0.33.2"
|
||||
lodash.clonedeep "4.5.0"
|
||||
lodash.get "^4.4.2"
|
||||
|
||||
@ -6438,11 +6446,6 @@ array-union@^2.1.0:
|
||||
resolved "https://registry.npmjs.org/array-union/-/array-union-2.1.0.tgz#b798420adbeb1de828d84acd8a2e23d3efe85e8d"
|
||||
integrity sha512-HGyxoOTYUyCM6stUe6EJgnd4EoewAI7zMdfqO+kGjnlZmBDz/cR5pf8r/cR4Wq60sL/p0IkcjUEEPwS3GFrIyw==
|
||||
|
||||
array-union@^3.0.1:
|
||||
version "3.0.1"
|
||||
resolved "https://registry.npmjs.org/array-union/-/array-union-3.0.1.tgz#da52630d327f8b88cfbfb57728e2af5cd9b6b975"
|
||||
integrity sha512-1OvF9IbWwaeiM9VhzYXVQacMibxpXOMYVNIvMtKRyX9SImBXpKcFr8XvFDeEslCyuH/t6KRt7HEO94AlP8Iatw==
|
||||
|
||||
array-uniq@^1.0.1:
|
||||
version "1.0.3"
|
||||
resolved "https://registry.npmjs.org/array-uniq/-/array-uniq-1.0.3.tgz#af6ac877a25cc7f74e058894753858dfdb24fdb6"
|
||||
@ -8463,18 +8466,6 @@ copy-text-to-clipboard@^3.0.1:
|
||||
resolved "https://registry.npmjs.org/copy-text-to-clipboard/-/copy-text-to-clipboard-3.0.1.tgz#8cbf8f90e0a47f12e4a24743736265d157bce69c"
|
||||
integrity sha512-rvVsHrpFcL4F2P8ihsoLdFHmd404+CMg71S756oRSeQgqk51U3kicGdnvfkrxva0xXH92SjGS62B0XIJsbh+9Q==
|
||||
|
||||
copy-webpack-plugin@^10.2.0:
|
||||
version "10.2.4"
|
||||
resolved "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-10.2.4.tgz#6c854be3fdaae22025da34b9112ccf81c63308fe"
|
||||
integrity sha512-xFVltahqlsRcyyJqQbDY6EYTtyQZF9rf+JPjwHObLdPFMEISqkFkr7mFoVOC6BfYS/dNThyoQKvziugm+OnwBg==
|
||||
dependencies:
|
||||
fast-glob "^3.2.7"
|
||||
glob-parent "^6.0.1"
|
||||
globby "^12.0.2"
|
||||
normalize-path "^3.0.0"
|
||||
schema-utils "^4.0.0"
|
||||
serialize-javascript "^6.0.0"
|
||||
|
||||
copy-webpack-plugin@^11.0.0:
|
||||
version "11.0.0"
|
||||
resolved "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-11.0.0.tgz#96d4dbdb5f73d02dd72d0528d1958721ab72e04a"
|
||||
@ -12013,18 +12004,6 @@ globby@^11.0.1, globby@^11.0.2, globby@^11.0.3, globby@^11.0.4, globby@^11.1.0:
|
||||
merge2 "^1.4.1"
|
||||
slash "^3.0.0"
|
||||
|
||||
globby@^12.0.2:
|
||||
version "12.2.0"
|
||||
resolved "https://registry.npmjs.org/globby/-/globby-12.2.0.tgz#2ab8046b4fba4ff6eede835b29f678f90e3d3c22"
|
||||
integrity sha512-wiSuFQLZ+urS9x2gGPl1H5drc5twabmm4m2gTR27XDFyjUHJUNsS8o/2aKyIF6IoBaR630atdher0XJ5g6OMmA==
|
||||
dependencies:
|
||||
array-union "^3.0.1"
|
||||
dir-glob "^3.0.1"
|
||||
fast-glob "^3.2.7"
|
||||
ignore "^5.1.9"
|
||||
merge2 "^1.4.1"
|
||||
slash "^4.0.0"
|
||||
|
||||
globby@^13.1.1:
|
||||
version "13.1.3"
|
||||
resolved "https://registry.npmjs.org/globby/-/globby-13.1.3.tgz#f62baf5720bcb2c1330c8d4ef222ee12318563ff"
|
||||
@ -12757,7 +12736,7 @@ ignore@^4.0.3, ignore@^4.0.6:
|
||||
resolved "https://registry.npmjs.org/ignore/-/ignore-4.0.6.tgz#750e3db5862087b4737ebac8207ffd1ef27b25fc"
|
||||
integrity sha512-cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg==
|
||||
|
||||
ignore@^5.0.0, ignore@^5.1.1, ignore@^5.1.8, ignore@^5.1.9, ignore@^5.2.0:
|
||||
ignore@^5.0.0, ignore@^5.1.1, ignore@^5.1.8, ignore@^5.2.0:
|
||||
version "5.2.4"
|
||||
resolved "https://registry.npmjs.org/ignore/-/ignore-5.2.4.tgz#a291c0c6178ff1b960befe47fcdec301674a6324"
|
||||
integrity sha512-MAb38BcSbH0eHNBxn7ql2NH/kX33OkB3lZ1BNdh7ENeRChHTYsTvWrMubiIAMNS2llXEEgZ1MUOBtXChP3kaFQ==
|
||||
|
||||
Loading…
Reference in New Issue
Block a user