fix: fallback to original dataset VR for XS

Co-authored-by: Davide Punzo <punzodavide@hotmail.it>
This commit is contained in:
Igor Octaviano 2020-12-03 12:15:27 -03:00 committed by GitHub
parent 138e0fb3bf
commit f57725ac8b
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
3 changed files with 55 additions and 25 deletions

View File

@ -1,5 +1,5 @@
import React, { useState, useEffect } from 'react';
import { classes } from '@ohif/core';
import { classes, cornerstone as OHIFCornerstone } from '@ohif/core';
import dcmjs from 'dcmjs';
import DicomBrowserSelect from './DicomBrowserSelect';
import moment from 'moment';
@ -10,6 +10,8 @@ const { ImageSet } = classes;
const { DicomMetaDictionary } = dcmjs.data;
const { nameMap } = DicomMetaDictionary;
const { metadataProvider } = OHIFCornerstone;
const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
const [
activeDisplaySetInstanceUID,
@ -17,6 +19,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
] = useState(displaySetInstanceUID);
const [activeInstance, setActiveInstance] = useState(0);
const [tags, setTags] = useState([]);
const [meta, setMeta] = useState('');
const [instanceList, setInstanceList] = useState([]);
const [displaySetList, setDisplaySetList] = useState([]);
const [isImageStack, setIsImageStack] = useState(false);
@ -83,6 +86,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
}
setTags(getSortedTags(metadata));
setMeta(metadata);
setInstanceList(instanceList);
setDisplaySetList(newDisplaySetList);
setIsImageStack(isImageStack);
@ -114,41 +118,43 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
options={displaySetList}
/>
{instanceSelectList}
<DicomTagTable tags={tags}></DicomTagTable>
<DicomTagTable tags={tags} meta={meta}></DicomTagTable>
</div>
);
};
function DicomTagTable({ tags }) {
const rows = getFormattedRowsFromTags(tags);
function DicomTagTable({ tags, meta }) {
const rows = getFormattedRowsFromTags(tags, meta);
return (
<div>
<table className="dicom-tag-browser-table">
<tr>
<th className="dicom-tag-browser-table-left">Tag</th>
<th className="dicom-tag-browser-table-left">Value Representation</th>
<th className="dicom-tag-browser-table-left">Keyword</th>
<th className="dicom-tag-browser-table-left">Value</th>
</tr>
{rows.map(row => {
const className = row.className ? row.className : null;
<tbody>
<tr>
<th className="dicom-tag-browser-table-left">Tag</th>
<th className="dicom-tag-browser-table-left">Value Representation</th>
<th className="dicom-tag-browser-table-left">Keyword</th>
<th className="dicom-tag-browser-table-left">Value</th>
</tr>
{rows.map((row, index) => {
const className = row.className ? row.className : null;
return (
<tr className={className}>
<td>{row[0]}</td>
<td className="dicom-tag-browser-table-center">{row[1]}</td>
<td>{row[2]}</td>
<td>{row[3]}</td>
</tr>
);
})}
return (
<tr className={className} key={`DICOMTagRow-${index}`}>
<td>{row[0]}</td>
<td className="dicom-tag-browser-table-center">{row[1]}</td>
<td>{row[2]}</td>
<td>{row[3]}</td>
</tr>
);
})}
</tbody>
</table>
</div>
);
}
function getFormattedRowsFromTags(tags) {
function getFormattedRowsFromTags(tags, meta) {
const rows = [];
tags.forEach(tagInfo => {
@ -175,6 +181,17 @@ function getFormattedRowsFromTags(tags) {
rows.push(...formatedRowsFromTags);
});
} else {
if (tagInfo.vr === 'xs') {
try {
const dataset = metadataProvider.getStudyDataset(meta.StudyInstanceUID);
const tag = dcmjs.data.Tag.fromPString(tagInfo.tag).toCleanString();
const originalTagInfo = dataset[tag];
tagInfo.vr = originalTagInfo.vr;
} catch (error) {
console.error(`Failed to parse value representation for tag '${tagInfo.keyword}'`);
}
}
rows.push([
`${tagInfo.tagIndent}${tagInfo.tag}`,
tagInfo.vr,

View File

@ -20,6 +20,7 @@ class MetadataProvider {
writable: false,
value: new Map(),
});
this.datasets = {};
}
async addInstance(dicomJSONDatasetOrP10ArrayBuffer, options = {}) {
@ -52,6 +53,7 @@ class MetadataProvider {
SOPInstanceUID,
} = naturalizedDataset;
this._getAndCacheStudyDataset(StudyInstanceUID, dicomJSONDataset);
const study = this._getAndCacheStudy(StudyInstanceUID);
const series = this._getAndCacheSeriesFromStudy(study, SeriesInstanceUID);
const instance = this._getAndCacheInstanceFromStudy(series, SOPInstanceUID);
@ -71,6 +73,16 @@ class MetadataProvider {
this.imageIdToUIDs.set(imageId, uids);
}
_getAndCacheStudyDataset(StudyInstanceUID, dataset) {
if (!this.datasets[StudyInstanceUID]) {
this.datasets[StudyInstanceUID] = dataset;
}
}
getStudyDataset(StudyInstanceUID) {
return this.datasets[StudyInstanceUID];
}
_getAndCacheStudy(StudyInstanceUID) {
const studies = this.studies;
@ -83,6 +95,7 @@ class MetadataProvider {
return study;
}
_getAndCacheSeriesFromStudy(study, SeriesInstanceUID) {
let series = study.series.get(SeriesInstanceUID);

View File

@ -15,8 +15,8 @@ const ErrorFallback = ({ error, componentStack, resetErrorBoundary }) => {
const OHIFErrorBoundary = ({
context = 'OHIF',
onReset = () => {},
onError = () => {},
onReset = () => { },
onError = () => { },
fallbackComponent,
children,
}) => {
@ -45,7 +45,7 @@ OHIFErrorBoundary.propTypes = {
onReset: PropTypes.func,
onError: PropTypes.func,
children: PropTypes.node.isRequired,
fallbackComponent: PropTypes.element,
fallbackComponent: PropTypes.oneOfType([PropTypes.node, PropTypes.func, PropTypes.element]),
};
export default OHIFErrorBoundary;