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add new viewer folder

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This commit is contained in:
Erik Ziegler 2018-12-14 15:23:48 +01:00
parent d541c23117
commit fc5bd73c1e
26 changed files with 23182 additions and 0 deletions
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{
"name": "react-cornerstone-viewport-example",
"version": "0.0.0",
"license": "MIT",
"private": true,
"dependencies": {
"cornerstone-core": "2.2.8",
"cornerstone-math": "0.1.7",
"cornerstone-tools": "3.0.0-b.1471",
"cornerstone-wado-image-loader": "2.2.3",
"dicom-parser": "1.8.3",
"hammerjs": "^2.0.8",
"lodash.debounce": "^4.0.8",
"moment": "^2.22.2",
"prop-types": "^15.6.2",
"react": "^16.4.1",
"react-cornerstone-viewport": "^0.1.1",
"react-dom": "^16.4.1",
"react-scripts": "^2.1.1",
"react-viewerbase": "^0.1.2",
"ohif-core": "link:/Users/Erik/Projects/OHIF/ohif-core"
},
"scripts": {
"copy:webworkers": "cp node_modules/cornerstone-wado-image-loader/dist/*.min.js* public",
"version": "node -p -e \"'export default \\'' + require('./package.json').version + '\\';'\" > src/version.js",
"sha": "echo \"export default '\"$(git rev-parse HEAD)\"';\" > src/sha.js",
"details": "npm run version && npm run sha",
"prep": "npm run details && npm run copy:webworkers",
"start": "npm run prep && react-scripts start",
"build": "npm run prep && react-scripts build",
"test": "react-scripts test --env=jsdom",
"eject": "react-scripts eject"
},
"browserslist": [
">0.2%",
"not dead",
"not ie <= 11",
"not op_mini all"
]
}

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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="theme-color" content="#000000">
<link rel="manifest" href="%PUBLIC_URL%/manifest.json">
<title>react-cornerstone-viewport</title>
<!-- Latest compiled and minified CSS -->
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
</head>
<body>
<noscript>
You need to enable JavaScript to run this app.
</noscript>
<div id="root"></div>
</body>
</html>

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{
"short_name": "react-cornerstone-viewport",
"name": "react-cornerstone-viewport",
"start_url": "./index.html",
"display": "standalone",
"theme_color": "#000000",
"background_color": "#ffffff"
}

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html,
body,
#root {
background-color: black;
height: 100%;
width: 100%;
margin: 0;
}
body {
box-sizing: border-box;
margin: 0;
padding: 0;
-webkit-font-smoothing: antialiased;
-moz-osx-font-smoothing: grayscale;
}

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import React, { Component } from 'react';
import { withRouter } from 'react-router';
import { Route, Switch } from 'react-router-dom';
import { OHIF } from 'ohif-core';
import ViewerRouting from "./ViewerRouting.js";
import IHEInvokeImageDisplay from './IHEInvokeImageDisplay.js';
import './App.css';
const reload = () => window.location.reload();
const Studylist = OHIF.studylist.components.StudyList;
function setContext(context) {
/*Rollbar.configure({
payload: {
context
}
});*/
console.log(context);
}
class App extends Component {
componentDidMount() {
// Temporary until the rest of the UI is in React
window.router = {
history: this.props.history
};
this.unlisten = this.props.history.listen((location, action) => {
setContext(window.location.pathname);
});
}
componentWillUnmount() {
this.unlisten();
}
render() {
return (
<Switch>
<Route
exact
path="/studylist"
component={Studylist}
/*auth={this.props.auth}*/
store={this.props.store}
/>
<Route
exact
path="/"
component={Studylist}
/*auth={this.props.auth}*/
store={this.props.store}
/>
<Route
path="/viewer/:studyInstanceUids"
component={ViewerRouting}
/*auth={this.props.auth}*/
store={this.props.store}
/>
<Route
path="/study/:studyInstanceUid/series/:seriesInstanceUids"
component={ViewerRouting}
/*auth={this.props.auth}*/
store={this.props.store}
/>
<Route
path="/IHEInvokeImageDisplay"
component={IHEInvokeImageDisplay}
/*auth={this.props.auth}*/
store={this.props.store}
/>
{/*<Route path="/silent-refresh.html" onEnter={reload} />
<Route path="/logout-redirect.html" onEnter={reload} />*/}
<Route render={() =>
<div> Sorry, this page does not exist. </div>}
/>
</Switch>
);
}
}
export default withRouter(App);

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import React, { Component } from "react";
import PropTypes from "prop-types";
import ViewerFromStudyData from "./ViewerFromStudyData.js";
function IHEInvokeImageDisplay({ match }) {
const requestType = match.params.query.requestType;
let studyInstanceUids;
let displayStudyList = false;
if (requestType === "STUDY") {
studyInstanceUids = match.params.query.studyUID.split(';');
} else if (requestType === "STUDYBASE64") {
const uids = this.params.query.studyUID;
const decodedData = window.atob(uids);
studyInstanceUids = decodedData.split(';');
} else if (requestType === "PATIENT") {
const patientUids = this.params.query.patientID.split(';');
displayStudyList = true
} else {
displayStudyList = true
}
if (displayStudyList) {
//return (<StudyList/>);
return ('');
}
return (
<ViewerFromStudyData studyInstanceUids={studyInstanceUids}/>
);
}
export default IHEInvokeImageDisplay;

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import React, {Component} from "react";
import PropTypes from "prop-types";
import Viewer from "./viewer/viewer.js";
import { OHIF } from 'ohif-core';
// TODO: Move to react-viewerbase
function createDisplaySets(studies) {
// Define the OHIF.viewer.data global object
// TODO: Save all data that is currently in OHIF.viewer in redux instead
OHIF.viewer.data = OHIF.viewer.data || {};
// @TypeSafeStudies
// Clears OHIF.viewer.Studies collection
OHIF.viewer.Studies.removeAll();
// @TypeSafeStudies
// Clears OHIF.viewer.StudyMetadataList collection
OHIF.viewer.StudyMetadataList.removeAll();
OHIF.viewer.data.studyInstanceUids = [];
const updatedStudies = studies.map(study => {
const studyMetadata = new OHIF.metadata.OHIFStudyMetadata(study, study.studyInstanceUid);
let displaySets = study.displaySets;
if (!study.displaySets) {
displaySets = OHIF.viewerbase.sortingManager.getDisplaySets(studyMetadata);
study.displaySets = displaySets;
}
studyMetadata.setDisplaySets(displaySets);
study.selected = true;
OHIF.viewer.Studies.insert(study);
OHIF.viewer.StudyMetadataList.insert(studyMetadata);
OHIF.viewer.data.studyInstanceUids.push(study.studyInstanceUid);
// Updates WADO-RS metaDataManager
OHIF.viewerbase.updateMetaDataManager(study);
return study;
});
return updatedStudies;
}
class ViewerFromStudyData extends Component {
constructor(props) {
super(props);
this.state = {
studies: null,
error: null
};
}
componentDidMount() {
// TODO: Avoid using timepoints here
//const params = { studyInstanceUids, seriesInstanceUids, timepointId, timepointsFilter={} };
const params = {
studyInstanceUids: this.props.studyInstanceUids,
seriesInstanceUids: this.props.seriesInstanceUids,
}
const promise = OHIF.viewerbase.prepareViewerData(params);
// Render the viewer when the data is ready
promise.then(({ studies, viewerData }) => {
OHIF.viewer.data = viewerData;
const updatedStudies = createDisplaySets(studies);
this.setState({
studies: updatedStudies,
});
}).catch(error => {
this.setState({
error,
});
});
}
render() {
if (this.state.error) {
return (<div>Error: {JSON.stringify(this.state.error)}</div>);
} else if (!this.state.studies) {
return (<div>Loading...</div>);
}
return (
<Viewer studies={this.state.studies}/>
);
}
}
ViewerFromStudyData.propTypes = {
studyInstanceUids: PropTypes.array.isRequired,
seriesInstanceUids: PropTypes.array
};
export default ViewerFromStudyData;

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import React, {Component} from "react";
import PropTypes from "prop-types";
import ViewerFromStudyData from "./ViewerFromStudyData.js";
// TODO: Move to react-viewerbase
function ViewerRouting({ match }) {
const { studyInstanceUids, seriesInstanceUids } = match.params;
let studyUIDs;
let seriesUIDs;
if (studyInstanceUids && !seriesInstanceUids) {
studyUIDs = studyInstanceUids.split(';');
} else if (studyInstanceUids && seriesInstanceUids) {
studyUIDs = [match.params.studyInstanceUid];
seriesUIDs = match.params.seriesInstanceUids.split(';');
}
return (
<ViewerFromStudyData studyInstanceUids={studyUIDs} seriesInstanceUids={seriesUIDs}/>
);
}
ViewerRouting.propTypes = {
match: PropTypes.shape({
params: PropTypes.shape({
studyInstanceUids: PropTypes.string.isRequired,
seriesInstanceUids: PropTypes.string
})
})
};
export default ViewerRouting;

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import { OHIF } from 'ohif-core';
import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
import sha from './sha.js';
import version from './version.js';
OHIF.info = {
sha,
version
};
const maxWebWorkers = Math.max(navigator.hardwareConcurrency - 1, 1);
const config = {
maxWebWorkers,
startWebWorkersOnDemand: true,
webWorkerPath: OHIF.utils.absoluteUrl('packages/ohif_cornerstone/public/js/cornerstoneWADOImageLoaderWebWorker.es5.js'),
taskConfiguration: {
decodeTask: {
loadCodecsOnStartup: true,
initializeCodecsOnStartup: false,
codecsPath: OHIF.utils.absoluteUrl('packages/ohif_cornerstone/public/js/cornerstoneWADOImageLoaderCodecs.es5.js'),
usePDFJS: false
}
}
};
cornerstoneWADOImageLoader.webWorkerManager.initialize(config);
cornerstoneWADOImageLoader.configure({
beforeSend: function(xhr) {
const headers = OHIF.DICOMWeb.getAuthorizationHeader();
if (headers.Authorization) {
xhr.setRequestHeader("Authorization", headers.Authorization);
}
}
});

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import React, { Component } from 'react';
import PropTypes from 'prop-types';
import { OHIF } from 'ohif-core';
import { StudyBrowser } from 'react-viewerbase';
import cornerstone from 'cornerstone-core';
/**
* Asynchronous wrapper around Cornerstone's renderToCanvas method.
*
* @param {HTMLElement} canvasElement An HTML <canvas> element
* @param {Image} image A Cornerstone Image
*
* @return {Promise} A promise tracking the progress of the rendering. Resolves empty.
*/
function renderAsync(canvasElement, image) {
return new Promise((resolve, reject) => {
try {
cornerstone.renderToCanvas(canvasElement, image);
resolve();
} catch(error) {
reject(error);
}
});
}
// Define a handler for success on image load
const loadSuccess = function(image, studyInstanceUid, displaySetInstanceUid) {
// This is an off-screen canvas. It's used to get dataURL images by using
// cornerstone.renderToCanvas function.
const canvasElement = document.createElement('canvas');
canvasElement.width = 193;
canvasElement.height = 123;
// Render the image to canvas to be able to get its dataURL
renderAsync(canvasElement, image).then(() => {
const studies = this.state.studiesForBrowser;
const study = studies.find(study => study.studyInstanceUid === studyInstanceUid);
const thumbnail = study.thumbnails.find(t => t.displaySetInstanceUid === displaySetInstanceUid);
thumbnail.imageSrc = canvasElement.toDataURL('image/jpeg', 1);
this.setState({
studiesForBrowser: studies
});
});
};
// Define a handler for error on image load
const loadError = function(error, studyInstanceUid, displaySetInstanceUid) {
const studies = this.state.studiesForBrowser;
const study = studies.find(study => study.studyInstanceUid === studyInstanceUid);
const thumbnail = study.thumbnails.find(t => t.displaySetInstanceUid === displaySetInstanceUid);
thumbnail.error = error;
this.setState({
studiesForBrowser: studies
});
};
class FlexboxLayout extends Component {
constructor(props) {
super(props);
this.state = {
leftSidebarOpen: true,
rightSidebarOpen: false,
studiesForBrowser: this.getStudiesForBrowser(),
};
this.getStudiesForBrowser = this.getStudiesForBrowser.bind(this);
this.getThumbnailsFromImageIds = this.getThumbnailsFromImageIds.bind(this);
}
componentDidMount() {
this.getThumbnailsFromImageIds();
}
getThumbnailsFromImageIds() {
const studyThumbnails = this.state.studiesForBrowser.forEach(function (study) {
const { studyInstanceUid } = study;
study.thumbnails.forEach(function (displaySet) {
const imageId = displaySet.imageId;
const {displaySetInstanceUid, seriesDescription, seriesNumber, instanceNumber, numImageFrames} = displaySet;
cornerstone.loadAndCacheImage(imageId).then((image) => {
loadSuccess.call(this, image, studyInstanceUid, displaySetInstanceUid);
}, error => {
loadError.call(this, error, studyInstanceUid, displaySetInstanceUid);
});
}, this);
}, this);
}
getStudiesForBrowser() {
// @TypeSafeStudies
const studies = OHIF.viewer.Studies.findAllBy({
selected: true
});
// TODO[react]:
// - Add sorting of display sets
// - Pass in which display set is active from Redux
// - Pass in errors and stack loading progress from Redux
// - Add useMiddleSeriesInstanceAsThumbnail
// - Add showStackLoadingProgressBar option
return studies.map((study) => {
const { studyInstanceUid } = study;
const thumbnails = study.displaySets.map((displaySet) => {
const active = false;
const stackPercentComplete = 0;
const { displaySetInstanceUid, seriesDescription, seriesNumber, instanceNumber, numImageFrames } = displaySet;
const imageId = displaySet.images[0].getImageId();
return {
imageSrc: '',
imageId,
displaySetInstanceUid,
seriesDescription,
seriesNumber,
instanceNumber,
numImageFrames,
active,
stackPercentComplete
};
});
return {
studyInstanceUid,
thumbnails
};
});
}
render() {
let mainContentClassName = "mainContent"
if (this.state.leftSidebarOpen) {
mainContentClassName += ' sidebar-left-open';
}
if (this.state.rightSidebarOpen) {
mainContentClassName += ' sidebar-right-open';
}
// TODO[react]: Add measurementLightTable
return (
<div className="viewerSection">
<div className={this.state.leftSidebarOpen ? "sidebarMenu sidebar-left sidebar-open" : "sidebarMenu sidebar-left"}>
<StudyBrowser studies={this.state.studiesForBrowser}/>
</div>
<div className={mainContentClassName}>
{/* TODO: Needs to be moved from Meteor package to react-viewerbase: <ViewerMain studies={this.props.studies}/>*/}
</div>
<div className={this.state.rightSidebarOpen ? "sidebarMenu sidebar-right sidebar-open" : "sidebarMenu sidebar-right"}>
{/*{{> measurementLightTable (clone this)}}*/}
</div>
</div>
);
}
}
FlexboxLayout.propTypes = {
studies: PropTypes.array.isRequired
};
export default FlexboxLayout;

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.viewerSection
display: flex
flex: 1
flex-flow: row nowrap
align-items: stretch
height: 'calc(100% - %s)' % ($toolbarHeight)
width: 100%
.sidebarMenu
height: 100%
// required transformation to make inner fixed elements relative to this one
transform(scale(1))
transition($sidebarTransition)
.sidebar-option
height: 100%
max-width: inherit
position: absolute
transform(translateX(100%))
transition($sidebarTransition)
width: 100%
&.active
transform(translateX(0%))
.sidebar-left
theme('border-right', '%s solid $uiBorderColor' % $uiBorderThickness)
flex: 1
margin-left: - $studiesSidebarMenuWidth
max-width: $studiesSidebarMenuWidth
order: 1
&.sidebar-open
margin-left: 0
.mainContent
flex: 1
height: 100%
order: 2
overflow: hidden
transition($sidebarTransition)
width: 100%
.sidebar-right
flex: 1
margin-right: - $rightSidebarMenuWidth
max-width: $rightSidebarMenuWidth
order: 3
position: relative
&[data-timepoints="3"]
margin-right: - ($rightSidebarMenuWidth + 135.5px)
max-width: $rightSidebarMenuWidth + 135.5px
&[data-timepoints="4"]
margin-right: - ($rightSidebarMenuWidth + 270px)
max-width: $rightSidebarMenuWidth + 270px
&.sidebar-open
margin-right: 0
.studiesListedChanger
theme('border-bottom', '%s solid $uiBorderColor' % $uiBorderThickness)
padding: 20px 10px
text-align: center

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<head>
<meta charset="utf-8">
<title>OHIF Viewer</title>
<meta name="description" content="Open Health Imaging Foundation DICOM Viewer">
<meta name="viewport" content="width=device-width,initial-scale=1.0,minimum-scale=1,maximum-scale=1,user-scalable=no">
<link rel="shortcut icon" type="image/png" href="/images/logo.png" sizes="16x16 32x32 64x64">
<!--Best display for mobile devices-->
<meta http-equiv="cleartype" content="on">
<meta name="MobileOptimized" content="320">
<meta name="HandheldFriendly" content="True">
<meta name="apple-mobile-web-app-capable" content="yes">
</head>
<body>
<div id="root"></div>
</body>

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import React from 'react';
import ReactDOM from 'react-dom';
import { BrowserRouter } from 'react-router-dom';
import { Provider } from 'react-redux';
import { createStore } from 'redux';
import App from './App.js';
import { OHIF } from 'ohif-core';
import './config';
const store = createStore(OHIF.redux.combinedReducer);
// TODO[react] Use a provider when the whole tree is React
window.store = store;
ReactDOM.render(
<Provider store={store}>
<BrowserRouter>
<App store={store}/>
</BrowserRouter>
</Provider>,
document.getElementById('root')
);

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import loglevel from 'loglevel';
log = loglevel.getLogger('OHIFViewer');
log.setLevel('info');

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export default '7b66dec163174eae2f6aca133f740529c8b4d08c';

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export default '0.0.0';

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import React, { Component } from "react";
import PropTypes from "prop-types";
import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
import { OHIF } from 'ohif-core';
import { CineDialog } from 'react-viewerbase';
import FlexboxLayout from '../flexboxLayout/flexboxLayout.js';
/**
* Inits OHIF Hanging Protocol's onReady.
* It waits for OHIF Hanging Protocol to be ready to instantiate the ProtocolEngine
* Hanging Protocol will use OHIF LayoutManager to render viewports properly
*/
/*const initHangingProtocol = () => {
// When Hanging Protocol is ready
HP.ProtocolStore.onReady(() => {
// Gets all StudyMetadata objects: necessary for Hanging Protocol to access study metadata
const studyMetadataList = OHIF.viewer.StudyMetadataList.all();
// Caches Layout Manager: Hanging Protocol uses it for layout management according to current protocol
const layoutManager = OHIF.viewerbase.layoutManager;
// Instantiate StudyMetadataSource: necessary for Hanging Protocol to get study metadata
const studyMetadataSource = new OHIF.studies.classes.OHIFStudyMetadataSource();
// Get prior studies map
const studyPriorsMap = OHIF.studylist.functions.getStudyPriorsMap(studyMetadataList);
// Creates Protocol Engine object with required arguments
const ProtocolEngine = new HP.ProtocolEngine(layoutManager, studyMetadataList, studyPriorsMap, studyMetadataSource);
// Sets up Hanging Protocol engine
HP.setEngine(ProtocolEngine);
});
};*/
OHIF.viewer.defaultTool = {
left: 'wwwc',
right: 'zoom',
middle: 'pan'
};
OHIF.viewer.refLinesEnabled = true;
OHIF.viewer.cine = {
framesPerSecond: 24,
loop: true
};
const viewportUtils = OHIF.viewerbase.viewportUtils;
OHIF.viewer.functionList = {
toggleCineDialog: viewportUtils.toggleCineDialog,
toggleCinePlay: viewportUtils.toggleCinePlay,
clearTools: viewportUtils.clearTools,
resetViewport: viewportUtils.resetViewport,
invert: viewportUtils.invert
};
// Create the synchronizer used to update reference lines
OHIF.viewer.updateImageSynchronizer = new cornerstoneTools.Synchronizer('cornerstonenewimage', cornerstoneTools.updateImageSynchronizer);
OHIF.viewer.metadataProvider = new OHIF.cornerstone.MetadataProvider();
// Metadata configuration
const metadataProvider = OHIF.viewer.metadataProvider;
cornerstone.metaData.addProvider(metadataProvider.provider.bind(metadataProvider));
class Viewer extends Component {
constructor(props) {
super(props);
this.state = {
leftSidebar: 'studies',
rightSidebar: 'measurements',
studies: this.props.studies
};
}
render() {
return (<>
<div className='viewerDialogs'>
{/*<CineDialog/>*/}
</div>
<div id="viewer" className='Viewer'>
{/*<ToolbarSection/>*/}
<FlexboxLayout studies={this.state.studies}/>
</div>
</>
);
}
}
Viewer.propTypes = {
studies: PropTypes.array
};
export default Viewer;

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@import "{ohif:viewerbase}/app"
body
background-color: black
#viewer
background-color: black
height: 100%
width: 100%
.loadingTextDiv
theme('color', '$textSecondaryColor')
font-size: 30px

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