* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: cs3d tools and toolGroups (#20)
* add more tools to work with cs3d mode
* fix hotkeys
* add stack manager usage for stach viewports
* add image scrollbar
* wip viewport overlay
* fix toAnnotation schema for tools
* fix the unnecessary size change that triggered resize
* hanging protocol improvement to allow unmatched errors
* study description matching for hanging protocol
* fix the displaysetOptions to work
* fix handle the active tool when a new viewport is added
* fix separate toolGroups for mode
* apply review comments
* apply review comments
* yarn lock
* feat: overlay component (#21)
* fix default displayset options
* add viewport overlay
* apply review comments
* feat: loading and orientation indicators (#22)
* add loading indicator
* add orientation marker initial work
* apply review comments
* fix: orientation markers (#23)
* finished the orientation markers
* fix various broken cypress tests
* apply review comments
* update yarn lock
* feat: re-working measurement tracking mode with cornerstone3d (#2805)
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: Add Measurement tracking mode with cs3D (#2789)
* feat: first render for cornerstone3d tracked viewport
* make tool active work
* wip for SR extension
* renamed dicom sr to cornerstone dicom sr
* remove cornerstone from dicom pdf and video
* move dicom sr logic to sr extension
* feat: Add hydration for the length tool
* fix SR display tool for length using cs3d
* fix default config
* fix: various bugs with sr viewport and tracking
* fix promptying to continue tracking for when SR is created
* feat: add keep trackign of unique identifiers
* fix hydration for same imageIds
* feat: Add SR toolGroup creation on modeEnter
* feat: remove the need for separate mapper for SR hydration
* add SR display for ellipse
* handle hydration of elliptical ROI tool
* remove cornerstone extension
* add arrow mapping
* feat: Add ArrowAnnotate SR display and hydration
* apply review comments
* apply review comments
* move viewport labels to the viewportData
* apply review comments
* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)
* fix: integration cypress tests with cornerstone3D
* revert to addOrUpdate as it makes more sense
* fix local drag and drop
* fix tests
* move dicomLoaderService to cornerstone extension
* fix various import bugs
* fix bug for local PT series
* fix various unit tests
* bump cs3d versions
* add angle and magnify tool
* bump dependencies to avoid broken peerDeps
* feat: add initial work for capture using cs3d
* feat: show annotations on the image capture
* feat: add svg layer export
* feat: Add CINE Tool
* feat: remove unnecessary viewport rendering for cine state changes
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* docs: modify and improve documentation (#2800)
* cleanup docs versionings
* feat: Add all version explanations
* version docs for 3.0
* wip for changing docs
* wip for updated docs
* add utility module documentation
* fix demo with nohoisting of history
* add slides and video to resources
* apply review comments
* fix: drag and drop SR into SR viewport (#2803)
* update yarn lock
Co-authored-by: Erik <erik.sweed@gmail.com>
* update pathnames to match v3-stable
* update the e2e pathname
* fix: various bugs with regard to tracking workflow (#2811)
* fix: various issues with measurement panel
* fix: update default tool style for annotations
* fix: annotatoin label getting removed
* feat: Add backward compatibility for SR hydration with legacy cornerstone
* fix: cursors and ellipse ROI max style
* fix: ArrowAnnotate SRDisplay
* apply review comments
* bump package versions
* fix: bugin rehydration of SR
* fix: e2e tests
* fix active viewport thickness and arrowTool ui
* add readme for measurement tracking
* use uploaded image for readme
* add back images
* try to fix e2e test
* fix: window level presets hotkeys
* Update README.md
* update yarn lock
* feat: volume api and TMTV mode (#2817)
* feat: volumeAPI and TMTV mode
* feat: use cs3d cache service to obtain viewportData
* wip for volume api
* wip: fusion viewport
* feat: add blend mode option
* wip for image scrollbar
* fix drag and drop thumbnail
* wip for image scrollbar for voluems
* fix: element mismatch bug for scroll
* feat: Add image scrollbar to volumes
* feat: add syncGroups to volume api
* feat: add tmtv mode initial setup
* feat: add initial image options for the stack viewports
* feat: Add custom load strategy for volume viewports via HP
* apply review comments
fix: Jump presets cs3d (#2812)
* feat: Add JumpPreset to OHIF for Cornerstone3D
* fix: accessing viewport service from servicesManager
feat: volume API and TMTV mode (#2814)
* fix: do not display overlays on mip viewports
* feat: add optional disableCommands for toggle buttons
* fix: toggleCrossharis
* feat: config the crosshairs
* feat: add PetSUV Panel for changing metadata
* feat: initial work for the rectangleROIThreshold panel
* wip: measurement service
* roi threshold working
* feat: Add displayText to segmentations
* feat: add remove segmentation
* feat: add csv export
* feat: add RT export for annotations in tmtv mode
* fix: fusion to use pt in tmtv mode and measuremet mappings
* fix: various bugs
* apply review comments
* apply review comments
* feat: add fusion color maps
* add readme to tmtv mode
* Update README.md
* fix: try to fix build
* fix unit tests
* Update README.md
* feat: add about to the panel
* fix: changing strategy in roi panel
* apply review comments
* update package versions
* wip for stackPrefetch
* fix: cornerstone3d hydration and renaming (#2818)
* update readme
* renamed cornerstone extension
* wip for renaming cornerstone3D variables
* wip for renaming cornerstone3D variables
* wip for fixing bugs for SR viewport
* fix: jumpToMeasurement and initial label after hydration
* fix: fileName capitalization
* feat: use the new prefetch stack in the cs3d (#2820)
* feat: use the new prefetch stack in the cs3d
* use viewport scroll api for stack viewport
* fix cine stop when scrollbar changes
* feat: use new prefetch events
* fix loading state to not show repeatedly
* fix: various bugs for tmtv mode thresholding and new icons (#2823)
* feat: make tmtv mode available in worklist
* feat: add new icons for tmtv mode
* feat: add fusion color icon
* fix: parallel scale calculation
* fix: bump Cornerstone to get large image support working
* fix: Fix issues with CPU viewport flipping, including config files
* fix: bump cornerstone to fix magnify tool
* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport
* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys
* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors
* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)
Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.
* bump: dependency versions to fix hydration bugs (#2848)
* bump: dcmjs version to fix hydration bugs
* try to fix tests
* bump dependency versions
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* init
* more shifting
* Move @babel dependencies up to workspace root
* Begin updating dependent libraries to use sync'd webpack builds w/ watches
* Commit changes before a long weekend
* Split packages into platform and extensions
* Consolidate how/where we specify file/module type entrypoints
* Make it possible to pass in extensions as App props
* Resolve viewer's modules
* Target for UMD bundle
* Add Webpack Stylus loader
* Provide WebPack build options for microscopy, vtk, and ui
* Better entrypoint for extensions
* Push changes up to switch PCs
* Fix ESM symlink build for Viewers
* Shift docs to root
* Specify additional lerna config props
* Begin providing basic readme info
* Rename example extension folder
* Shift links to bottom of doc
* First attempt at a netlify deploy preview
* Attempt to fix deploy preview build
* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands
* Try to use global gitbook-cli
* Export node_modules path
* More agressive with modifying PATH
* Follow deploy log output advice
* try again to set bin path
* Try swapping bash with a new shell
* Try bash -l instead of exec bash
* Annd let's try again
* and again
* We may have figured it out johnny, boy
* We need to pull cornerstone-wado-image-loader files from hoisted node_modules
* Attempt to fix ticks/escapes
* Change copy syntax; try running tests on viewers from root for circleci
* Lower version to match circleci image
* Try alternative jest-canvas-mock location and version file syntax
* Run version command instead of calling node directly
* Try alternative jest transform
* Set path and enable workspaces
* Add codecov flags
* Use cpx so our copying finishes?
* Get all platform unit tests to run
* Run and report individually and in parallel
* Try once relying on codecov yaml to split w/ flags
* Add projects to split by flags
* Generate separate reports
* Trigger codecov after everything has finished running; these may not support flags
* Use recommended flags from issue comments for codecov
* Fix typo
* Remove clear flag
* Shift back to calling codecov from root
* Generate example for codecov issue
* Try fixing paths
* Simplify
* Try using codecov orb
* Bump circleci version
* Upload core and viewer
* Use full string paths
* Remove individual codecov calls
* Fix dir
* Combine files before upload
* Escape anchors
* tryfix syntax
* Escape string literal
* Combine lines to reduce path
* long paths
* Use home alias
* Fix filename
* Try to see the contents of our cat'd file
* Also upload `core`
* Try running with aliased folder
* Fix path; split PR and Merge unit tests into separate jobs
* Set default threshold
* Fix typo
* Changing to scoped package names
* Adding note
* Catch more updates
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.0
- @ohif/extension-dicom-html@0.0.4-alpha.0
- @ohif/extension-dicom-microscopy@0.0.9-alpha.0
- @ohif/extension-dicom-pdf@0.0.8-alpha.0
- @ohif/extension-vtk@0.1.4-alpha.0
- @ohif/core@0.11.1-alpha.0
- @ohif/i18n@0.2.3-alpha.0
- @ohif/ui@0.2.18-alpha.0
- @ohif/viewer@0.0.22-alpha.0
* Clean up primary readme
* Support for dev and dev:* commands
* Shift build command; satisfy default PWA build
* Remove old scripts
* Clean up UI to set webpack scripts
* Tidy up project links
* Clean duplicate code in UI project
* Update UI project's docs
* Clean up ui and i18n config
* Reduce duplicate code in `@ohif/core`
* Fix @ohif/ui versions
* bump @ohif/core versions
* Redux testkit dep
* Remove unused/duplicate config files for projects/packages
* ohif-core --> @ohif/core
* Safer publish command
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.1
- @ohif/extension-dicom-html@0.0.4-alpha.1
- @ohif/extension-dicom-microscopy@0.0.9-alpha.1
- @ohif/extension-dicom-pdf@0.0.8-alpha.1
- @ohif/extension-vtk@0.1.4-alpha.1
- @ohif/core@0.11.1-alpha.1
- @ohif/i18n@0.2.3-alpha.1
- @ohif/ui@0.2.18-alpha.1
- @ohif/viewer@0.0.22-alpha.1
* test version bump
* Add global prettier config
* chore(release): publish %s [skip ci]
- @ohif/viewer@0.0.22-alpha.2
* test lerna publish
* Update package.jsons
* Fix build scripts
* catch changes
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.2
- @ohif/extension-dicom-html@0.0.4-alpha.2
- @ohif/extension-dicom-microscopy@0.0.9-alpha.2
- @ohif/extension-dicom-pdf@0.0.8-alpha.2
- @ohif/extension-vtk@0.1.4-alpha.2
- @ohif/core@0.11.1-alpha.2
- @ohif/i18n@0.2.3-alpha.2
- @ohif/ui@0.2.18-alpha.2
- @ohif/viewer@0.0.22-alpha.3
* fix eslint issues caused by eslint 6 and our react-app config
* Publish with canary tag
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.3
- @ohif/extension-dicom-html@0.0.4-alpha.3
- @ohif/extension-dicom-microscopy@0.0.9-alpha.3
- @ohif/extension-dicom-pdf@0.0.8-alpha.3
- @ohif/extension-vtk@0.1.4-alpha.3
- @ohif/core@0.11.1-alpha.3
- @ohif/i18n@0.2.3-alpha.3
- @ohif/ui@0.2.18-alpha.3
- @ohif/viewer@0.0.22-alpha.4
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.4
- @ohif/extension-dicom-html@0.0.4-alpha.4
- @ohif/extension-dicom-microscopy@0.0.9-alpha.4
- @ohif/extension-dicom-pdf@0.0.8-alpha.4
- @ohif/extension-vtk@0.1.4-alpha.4
- @ohif/core@0.11.1-alpha.4
- @ohif/i18n@0.2.3-alpha.4
- @ohif/ui@0.2.18-alpha.4
- @ohif/viewer@0.0.22-alpha.5
* Simplify build
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.5
- @ohif/extension-dicom-html@0.0.4-alpha.5
- @ohif/extension-dicom-microscopy@0.0.9-alpha.5
- @ohif/extension-dicom-pdf@0.0.8-alpha.5
- @ohif/extension-vtk@0.1.4-alpha.5
- @ohif/core@0.11.1-alpha.5
- @ohif/i18n@0.2.3-alpha.5
- @ohif/ui@0.2.18-alpha.5
- @ohif/viewer@0.0.22-alpha.6
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.6
- @ohif/extension-dicom-html@0.0.4-alpha.6
- @ohif/extension-dicom-microscopy@0.0.9-alpha.6
- @ohif/extension-dicom-pdf@0.0.8-alpha.6
- @ohif/extension-vtk@0.1.4-alpha.6
- @ohif/core@0.11.1-alpha.6
- @ohif/i18n@0.2.3-alpha.6
- @ohif/ui@0.2.18-alpha.6
- @ohif/viewer@0.0.22-alpha.7
* Split version and publish
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.7
- @ohif/extension-dicom-html@0.0.4-alpha.7
- @ohif/extension-dicom-microscopy@0.0.9-alpha.7
- @ohif/extension-dicom-pdf@0.0.8-alpha.7
- @ohif/extension-vtk@0.1.4-alpha.7
- @ohif/core@0.11.1-alpha.7
- @ohif/i18n@0.2.3-alpha.7
- @ohif/ui@0.2.18-alpha.7
- @ohif/viewer@0.0.22-alpha.8
* Try simplify netlify build
* react-viewerbase --> @ohif/ui
* add test for stylus loader
* Try new way to specify publish path
* Use an output folder that won't be ignored
* Try move command
* fiddle with paths
* Dig for some information
* Make sure we're in root for our commands
* Remove discovery
* Setup script-tag example
* Fix typo
* Move config folder
* Update cornerstone extension to use shared/root webpack configs
* capture changes
* Update extension webpack configs
* Don't check in docz output
* Fix babel runtime resolution issue
* Simplify ui build steps
* Push in progress
* Shift directories
* Get viewer dev path to work
* Fix viewer commonjs build
* Fix build pwa config for viewers
* Make sure our package specific command can be called from root
* Update notes
* Fix imports and misc. merge notes
* Bump wado-image-loader version
* Switch up commands to remove webworkers copy
* Fix CI config
* Fix more broken package references
* Add react-dropzone
* Persist so e2e test can use
* Fix lockfile
* Use cypress orb to simplify CI
* Fix config
* Try again
* Install yarn latest for orb
* Install yarn a different way
* Wait on correct port
* Run tests in viewer project
* Fix cypress config
* Make Cypress happier - use default location
* Simplify e2e testing
* Capture UI changes since fork
* Catch core up
* Grab latest deps after merge
* Fix broken import
* Make sure cornerstone-wado-image-loader resolves to 3+
* Note regarding orbs
* Fix refresh on 404 routes
* Fix odd error for cornerstone-wado-image-loader
* Different target for UMD
* Simplify dev script
* Try to get fancy with netlify output
* Let's do it again
* Try to fix measurementTools issue
* See if we can get our lerna magic to work on merge to monorepo branch
