* feat: Allow navigating to a specified series and sop instance
This was a feature in OHIF v2, so adding it to v3, albeit with new
parameters.
feat: Allow comma separated as well as repeated args params
* docs
* Test fixes
* feat: Navigate to SOP selected - PR fixes
* Updated docs
* PR fixes
* feat: Context menu
feat: Custom context menu
Adding documentation
PR updates
* fix: Capture tool exception
* PR updates
* Add fully worked out examples in the basic test mode/extension
* Fix the menu display
* fix: Make the commands on clicks much more configurable
* Wait for load before double clicking
* docs
* PR changes - nothing functional, just moving things endlessly
* PR comments
* PR changes - rename the default context menu
* Renamed the cornerstoneContextMenu to measurementsContextMenu
* Add chevron right to the sub-menus
* feat: Add state sync and use it to remember viewport grid info
fix: Version updates
Fixes for toggling MPR mode
Fix the display when the interleaved load module fails
Fix the memory of the state to restore correctly
PR fixes for the state sync service
PR fixes
PR fixes
PR fixes
Added a hack warning to remove volumeDeactivate
Fixes for TMTV colormap setting
Fix the casing
Missed renames
fix: tests not running due to variance in ordering
Reverting some fixes to change case
PR changes - mostly comments and minor improvements
fix: All display sets were being updated on drag and drop
PR fixes - mostly renames
PR fixes
Test support for OHIF, for HP branch
test: Add at least a minimal set of automated tests for hanging protocols
Docs
PR fixes
Merge fixes
DOCS updates
Add an example of the mn hanging protocol
PR fixes
PR fixes
PR fixes
* Fix the drag and drop
PR fixes
* PR changes - update default keys for next/previous stage
* fix: Was storing the custom viewport grid too aggressively
Caused by a PR change misspelling a variable
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy
* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number
* fixed minor React bugs (errors on console)
* fixed React's console bugs that are logged for some series that doesn't have "description"
* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)
* metadata parser fix - providing default values of imagePlaneModule
* measurement SR support on multi-frame DICOM
* bug fix - jumping to the selected measurment on multi-frame DICOM
* upgrade dcmjs dependency to 2.8.1
* StudySummary component - allow "description" to be null
* make getUIDsFromImageID() method public from MetadataProvider
* imageId usage fixes to be more stable
* change the variable name to be more meaningful
* fix metaProvider importing
* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.
* use Array.findIndex instead of plain for loop
* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.
* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits
* simple code refactoring
* refactoring for checking undefined values - mappedAnnotations
* remove unreachable code
* code refactoring - prefer conditional chaining
* fix how we access imageIds of viewport (StackViewport)
* fix(volume):Support volume viewing
* fix(multiframe):Display multiframe US, and multiframe PR fixes
* fix(metadataProvider):Don't call combine if frame not defined
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: cs3d tools and toolGroups (#20)
* add more tools to work with cs3d mode
* fix hotkeys
* add stack manager usage for stach viewports
* add image scrollbar
* wip viewport overlay
* fix toAnnotation schema for tools
* fix the unnecessary size change that triggered resize
* hanging protocol improvement to allow unmatched errors
* study description matching for hanging protocol
* fix the displaysetOptions to work
* fix handle the active tool when a new viewport is added
* fix separate toolGroups for mode
* apply review comments
* apply review comments
* yarn lock
* feat: overlay component (#21)
* fix default displayset options
* add viewport overlay
* apply review comments
* feat: loading and orientation indicators (#22)
* add loading indicator
* add orientation marker initial work
* apply review comments
* fix: orientation markers (#23)
* finished the orientation markers
* fix various broken cypress tests
* apply review comments
* update yarn lock
* feat: re-working measurement tracking mode with cornerstone3d (#2805)
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: Add Measurement tracking mode with cs3D (#2789)
* feat: first render for cornerstone3d tracked viewport
* make tool active work
* wip for SR extension
* renamed dicom sr to cornerstone dicom sr
* remove cornerstone from dicom pdf and video
* move dicom sr logic to sr extension
* feat: Add hydration for the length tool
* fix SR display tool for length using cs3d
* fix default config
* fix: various bugs with sr viewport and tracking
* fix promptying to continue tracking for when SR is created
* feat: add keep trackign of unique identifiers
* fix hydration for same imageIds
* feat: Add SR toolGroup creation on modeEnter
* feat: remove the need for separate mapper for SR hydration
* add SR display for ellipse
* handle hydration of elliptical ROI tool
* remove cornerstone extension
* add arrow mapping
* feat: Add ArrowAnnotate SR display and hydration
* apply review comments
* apply review comments
* move viewport labels to the viewportData
* apply review comments
* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)
* fix: integration cypress tests with cornerstone3D
* revert to addOrUpdate as it makes more sense
* fix local drag and drop
* fix tests
* move dicomLoaderService to cornerstone extension
* fix various import bugs
* fix bug for local PT series
* fix various unit tests
* bump cs3d versions
* add angle and magnify tool
* bump dependencies to avoid broken peerDeps
* feat: add initial work for capture using cs3d
* feat: show annotations on the image capture
* feat: add svg layer export
* feat: Add CINE Tool
* feat: remove unnecessary viewport rendering for cine state changes
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* docs: modify and improve documentation (#2800)
* cleanup docs versionings
* feat: Add all version explanations
* version docs for 3.0
* wip for changing docs
* wip for updated docs
* add utility module documentation
* fix demo with nohoisting of history
* add slides and video to resources
* apply review comments
* fix: drag and drop SR into SR viewport (#2803)
* update yarn lock
Co-authored-by: Erik <erik.sweed@gmail.com>
* update pathnames to match v3-stable
* update the e2e pathname
* fix: various bugs with regard to tracking workflow (#2811)
* fix: various issues with measurement panel
* fix: update default tool style for annotations
* fix: annotatoin label getting removed
* feat: Add backward compatibility for SR hydration with legacy cornerstone
* fix: cursors and ellipse ROI max style
* fix: ArrowAnnotate SRDisplay
* apply review comments
* bump package versions
* fix: bugin rehydration of SR
* fix: e2e tests
* fix active viewport thickness and arrowTool ui
* add readme for measurement tracking
* use uploaded image for readme
* add back images
* try to fix e2e test
* fix: window level presets hotkeys
* Update README.md
* update yarn lock
* feat: volume api and TMTV mode (#2817)
* feat: volumeAPI and TMTV mode
* feat: use cs3d cache service to obtain viewportData
* wip for volume api
* wip: fusion viewport
* feat: add blend mode option
* wip for image scrollbar
* fix drag and drop thumbnail
* wip for image scrollbar for voluems
* fix: element mismatch bug for scroll
* feat: Add image scrollbar to volumes
* feat: add syncGroups to volume api
* feat: add tmtv mode initial setup
* feat: add initial image options for the stack viewports
* feat: Add custom load strategy for volume viewports via HP
* apply review comments
fix: Jump presets cs3d (#2812)
* feat: Add JumpPreset to OHIF for Cornerstone3D
* fix: accessing viewport service from servicesManager
feat: volume API and TMTV mode (#2814)
* fix: do not display overlays on mip viewports
* feat: add optional disableCommands for toggle buttons
* fix: toggleCrossharis
* feat: config the crosshairs
* feat: add PetSUV Panel for changing metadata
* feat: initial work for the rectangleROIThreshold panel
* wip: measurement service
* roi threshold working
* feat: Add displayText to segmentations
* feat: add remove segmentation
* feat: add csv export
* feat: add RT export for annotations in tmtv mode
* fix: fusion to use pt in tmtv mode and measuremet mappings
* fix: various bugs
* apply review comments
* apply review comments
* feat: add fusion color maps
* add readme to tmtv mode
* Update README.md
* fix: try to fix build
* fix unit tests
* Update README.md
* feat: add about to the panel
* fix: changing strategy in roi panel
* apply review comments
* update package versions
* wip for stackPrefetch
* fix: cornerstone3d hydration and renaming (#2818)
* update readme
* renamed cornerstone extension
* wip for renaming cornerstone3D variables
* wip for renaming cornerstone3D variables
* wip for fixing bugs for SR viewport
* fix: jumpToMeasurement and initial label after hydration
* fix: fileName capitalization
* feat: use the new prefetch stack in the cs3d (#2820)
* feat: use the new prefetch stack in the cs3d
* use viewport scroll api for stack viewport
* fix cine stop when scrollbar changes
* feat: use new prefetch events
* fix loading state to not show repeatedly
* fix: various bugs for tmtv mode thresholding and new icons (#2823)
* feat: make tmtv mode available in worklist
* feat: add new icons for tmtv mode
* feat: add fusion color icon
* fix: parallel scale calculation
* fix: bump Cornerstone to get large image support working
* fix: Fix issues with CPU viewport flipping, including config files
* fix: bump cornerstone to fix magnify tool
* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport
* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys
* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors
* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)
Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.
* bump: dependency versions to fix hydration bugs (#2848)
* bump: dcmjs version to fix hydration bugs
* try to fix tests
* bump dependency versions
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix(OHIFv3):Overlays were broken.
Adds a retrieveBulkData to elements containing BulkDataURI so that
anyone display the data can retrieve the required information.
* fix(OHIFv3):Added a call in the wrong spot, removed it.
* docs(OHIFv3):Added some documentation as requested
* feat: Add OpenID Connect support, speed up docker rebuilds
* fix: Switch Google Cloud API URL to v1
* chore: Remove redux-oidc and use our own components instead
* Update all the icons
* Turn off global tool sync; watch as the world burns
* Shift a bunch of things around so we can start tracking/setting per element
* ToolBarService to initiate one of three different calls; callback passed to all button types
* SplitButton and Toolbar Button to use new `onInteraction` prop and new toolbar state
* Changes to toolbar button interface and config
* Fix broken layout selector
* Update SR viewport to activate tools in viewport component
* Duplicate activation logic in measurement tracking extension
* Add alternative/dashed variants for SR Viewport
* pass through "setToolActive" commands for other viewport types
* fix small overlay bugs (no wwwc or scale info)
* Show SpacingBetweenSlices instead of PixelSpacing in patient information dialog
* Fix prop-types
* Update tracked viewport to have alternative tracked styling
* alt styling for SR viewports
* Update to support isLocked + isRehydratable
* fix broken logic
* fix broken logic
* switch icon style
* fix icon styles
* hover and click to start flow
* expedited workflow when data is not dirty (just after SR hydration)
* fix: setting elliptical roi tool
* fix arrow annotate dialog
* fix: do not show learn more button for now
* remove dead code
* simpler cache invalidation
* simpler cache invalidation part 2
* Fix for unable to spand study cards on separate pages
* Add segment part 2 (jump to frame and visibility toggle)
* Cr updates
* Filter displaysets with images
* feat: 🎸 Seg jump to slice + show/hide
Co-authored-by: James Petts <jamesapetts@gmail.com>
* Show series in Study Browser before their metadata is retrieved
* Switch to decreasing for loop after code review (thanks @ckedar!)
* feat: Limit concurrent series metadata requests (#1581)
* Limit concurrent series metadata requests
* Switch to decreasing for loop after code review (thanks @ckedar!)
* Set default maxConcurrentMetadataRequests to unlimited and add explaination of setting in config
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* Address comments from code review
* Comment out misbehaving test
Co-authored-by: Kedar <ckedar@gmail.com>
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
* async load cornerstoneWADOImageLoader chunk
* Lazy initializing of CornerstoneWADIImageLoader - delayed till Viewer creation
* Async loading of react-vtkjs-viewport
* withCornerstone HOC to wrap routes requiring CornerstoneWADOImageLoader initiazation
* removed dead code in comments
* initWeWorkers is no more. Remove al its references.
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
