* Added docs with new screenshots * Added doc to architecture * Added documentations to various extension modules * Added more documentation to modes * Added docs to managers * Added docs for services * Fixed deployment docs * Added white labelling documentation * Added i18n docs and measurement export
195 lines
7.6 KiB
Markdown
195 lines
7.6 KiB
Markdown
## Set up a local DICOM server
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- [Set up a local DICOM server](#set-up-a-local-dicom-server)
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- [Requirements](#requirements)
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- [Open Source DICOM Image Archives](#open-source-dicom-image-archives)
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- [Running Orthanc](#running-orthanc)
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- [Orthanc: Learn More](#orthanc-learn-more)
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- [Connecting to Orthanc](#connecting-to-orthanc)
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- [Configuration: Learn More](#configuration-learn-more)
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- [Running DCM4CHEE](#running-dcm4chee)
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ATTENTION! Already have a remote or local server? Skip to the
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[configuration section](#configuration-learn-more) below.
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While the OHIF Viewer can work with any data source, the easiest to configure
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are the ones that follow the [DICOMWeb][dicom-web] spec.
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1. Choose and install an Image Archive
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2. Upload data to your archive (e.g. with DCMTK's [storescu][storescu] or your
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archive's web interface)
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3. Keep the server running
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For our purposes, we will be using `Orthanc`, but you can see a list of
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[other Open Source options](#open-source-dicom-image-archives) below.
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### Requirements
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- Docker
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- [Docker for Mac](https://docs.docker.com/docker-for-mac/)
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- [Docker for Windows (recommended)](https://docs.docker.com/docker-for-windows/)
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- [Docker Toolbox for Windows](https://docs.docker.com/toolbox/toolbox_install_windows/)
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_Not sure if you have `docker` installed already? Try running `docker --version`
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in command prompt or terminal_
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> If you are using `Docker Toolbox` you need to change the _PROXY_DOMAIN_
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> parameter in _platform/viewer/package.json_ to http://192.168.99.100:8042 or
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> the ip docker-machine ip throws. This is the value [`WebPack`][webpack-proxy]
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> uses to proxy requests
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## Open Source DICOM Image Archives
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There are a lot of options available to you to use as a local DICOM server. Here are some of the more popular ones:
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| Archive | Installation |
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| --------------------------------------------- | ---------------------------------- |
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| [DCM4CHEE Archive 5.x][dcm4chee] | [W/ Docker][dcm4chee-docker] |
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| [Orthanc][orthanc] | [W/ Docker][orthanc-docker] |
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| [DICOMcloud][dicomcloud] (**DICOM Web only**) | [Installation][dicomcloud-install] |
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| [OsiriX][osirix] (**Mac OSX only**) | Desktop Client |
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| [Horos][horos] (**Mac OSX only**) | Desktop Client |
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_Feel free to make a Pull Request if you want to add to this list._
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Below, we will focus on `DCM4CHEE` and `Orthanc` usage:
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### Running Orthanc
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_Start Orthanc:_
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```bash
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# Runs orthanc so long as window remains open
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yarn run orthanc:up
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```
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_Upload your first Study:_
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1. Navigate to
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[Orthanc's web interface](http://localhost:8042/app/explorer.html) at
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`http://localhost:8042/app/explorer.html` in a web browser.
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2. In the top right corner, click "Upload"
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3. Click "Select files to upload..." and select one or more DICOM files
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4. Click "Start the upload"
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#### Orthanc: Learn More
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You can see the `docker-compose.yml` file this command runs at
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[`<project-root>/.docker/Nginx-Orthanc/`][orthanc-docker-compose], and more on
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Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
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#### Connecting to Orthanc
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Now that we have a local Orthanc instance up and running, we need to configure
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our web application to connect to it. Open a new terminal window, navigate to
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this repository's root directory, and run:
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```bash
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# If you haven't already, enable yarn workspaces
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yarn config set workspaces-experimental true
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# Restore dependencies
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yarn install
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# Run our dev command, but with the local orthanc config
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yarn run dev:orthanc
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```
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#### Configuration: Learn More
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> For more configuration fun, check out the
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> [Essentials Configuration](./index.md) guide.
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Let's take a look at what's going on under the hood here. `yarn run dev:orthanc`
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is running the `dev:orthanc` script in our project's `package.json` (inside `platform/viewer`). That script
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is:
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```js
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cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
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```
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- `cross-env` sets three environment variables
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- PROXY_TARGET: `/dicom-web`
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- PROXY_DOMAIN: `http://localhost:8042`
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- APP_CONFIG: `config/docker_nginx-orthanc.js`
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- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
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file. It will watch for changes and update as we develop.
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`PROXY_TARGET` and `PROXY_DOMAIN` tell our development server to proxy requests
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to `Orthanc`. This allows us to bypass CORS issues that normally occur when
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requesting resources that live at a different domain.
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The `APP_CONFIG` value tells our app which file to load on to `window.config`.
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By default, our app uses the file at
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`<project-root>/platform/viewer/public/config/default.js`. Here is what that
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configuration looks like:
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```js
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window.config = {
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routerBasename: '/',
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extensions: [],
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modes: [],
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showStudyList: true,
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dataSources: [
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{
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friendlyName: 'dcmjs DICOMWeb Server',
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namespace: 'org.ohif.default.dataSourcesModule.dicomweb',
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sourceName: 'dicomweb',
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configuration: {
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name: 'DCM4CHEE',
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wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
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qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
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wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
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qidoSupportsIncludeField: true,
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supportsReject: true,
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imageRendering: 'wadors',
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thumbnailRendering: 'wadors',
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enableStudyLazyLoad: true,
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supportsFuzzyMatching: true,
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supportsWildcard: true,
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},
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},
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],
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defaultDataSourceName: 'dicomweb',
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};
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```
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To learn more about how you can configure the OHIF Viewer, check out our
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[Configuration Guide](./index.md).
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### Running DCM4CHEE
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dcm4che is a collection of open source applications for healthcare enterprise written in Java programming language
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which implements DICOM standard. dcm4chee (extra 'e' at the end) is dcm4che project
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for an Image Manager/Image Archive which provides storage, retrieval and other functionalities.
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You can read more about dcm4chee in their website [here](https://www.dcm4che.org/)
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DCM4chee installation is out of scope for these tutorials and can be found [here](https://github.com/dcm4che/dcm4chee-arc-light/wiki/Run-minimum-set-of-archive-services-on-a-single-host)
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An overview of steps for running OHIF Viewer using a local DCM4CHEE is shown below:
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<div style="padding:56.25% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/557570043?badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="Local dcm4chee"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script>
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[dcm4chee]: https://github.com/dcm4che/dcm4chee-arc-light
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[dcm4chee-docker]: https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker
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[orthanc]: https://www.orthanc-server.com/
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[orthanc-docker]: http://book.orthanc-server.com/users/docker.html
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[dicomcloud]: https://github.com/DICOMcloud/DICOMcloud
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[dicomcloud-install]: https://github.com/DICOMcloud/DICOMcloud#running-the-code
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[osirix]: http://www.osirix-viewer.com/
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[horos]: https://www.horosproject.org/
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[default-config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js
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[html-templates]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/html-templates
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[config-files]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config
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