Commit Graph

239 Commits

Author SHA1 Message Date
Alireza
38d452e17d
feat(measurementService): use the new api for annotation manager in cs3d (#3206)
* fix OHIF to use the new api for annotation manager in cs3d

* bump package versions

* fix tests

* remove unnecessary code
2023-03-02 17:11:51 -05:00
Joe Boccanfuso
35d0787211
feat(ViewportActionBar and CinePlayer): Add new design for action bar and cine player (#3204)
* feat(ViewportActionBar): OHIF issue #3123 (#3186)

* feat(ViewportActionBar): OHIF issue #3123

- Renamed previous viewport action bar to be LegacyViewportActionBar
- Components LegacyViewportActionBar depends on also renamed: LegacyCinePlayer and LegacyPatientInfo
- New Viewport coded to specs in issue
- added React hook useResizeObserver
- added some tailwind classes

* Updated tailwind to 3.2.7.
Put external imports like React at the top of the import list.

* feat(CinePlayer and ViewportActionBar) (#3198)

* feat(CinePlayer and ViewportActionBar)
- OHIF issue 3123

- new look cine control implemented
- new custom blue color in tailwind config for various hover backgrounds in the cine control
- new icons added for cine

- Tooltip component now can be placed top (center) on hover
- Tooltip component border colour now consistent with specs

- fixed NPE in ViewportActionBar

- upgraded tailwind to 3.2.7 in platform/ui
- fixed issues in various button components brought by tailwind 3.2.7 where classes now need important flag

- fixed issue with InputRange component so that the tracked value property can change externally
- InputRange component can now optionally show its label

- added new measurement tracking state service to hydrate SR without prompting
- segmentation can also now be hydrated without prompting

* PR feedback:
- cine centralized to OHIFCornerstoneViewport
- introduced a type for the CinePlayer properties

* Addressed PR comments and concerns...

The DOM ref for the root component of the ViewportActionBar is now added to state
so that the various callbacks and ResizeObserver are updated with it.
The CinePlayer FPS slider tooltip was moved up so that its arrow does not
intersect the FPS text.
The hover area for the CinePlayer slider tooltip is now the FPS < > buttons and text.
The tracked measurements are now filtered to only include those of the active
viewport series when the tracked measurement navigation arrows are used.

* Addressed PR comments...

The update to tailwind 3.2.7 caused several look-and-feel, UI regressions,
so we are rolling back to 3.2.4.
2023-02-28 15:57:19 -05:00
Alireza
9b3f2e6638
chore: bump vtk version to fix rendering bug (#3192) 2023-02-22 21:51:33 -05:00
md-prog
b15988359f
feat(Calibration Tool): add a calibration tool that can manually recalibrate an image and measurements on it (#3136)
* minor bug fix - reading modalities

* react error log fix - button props

* react warn fix - Typography color prop

* calibration tool without persistence

* added toolbar button for calibration tool

* icon change for calibration tool

* important bug fix for calibration - length and calibration rate calculation

* fix weird autocorrection

* [fix] bugs after merging upstream

* [refactor] conform to the new service names
2023-02-22 21:01:36 -05:00
Bill Wallace
67fc3f733d
feat(SR): Measurement adapter mappings and save to same series (#3140)
* feat: Add adapter mappings for RectangleROI and Angle and save same

PR comments

* fix: Rehydrate check on non core measurement adapters
2023-02-17 16:44:21 -05:00
Alireza
926290f69e
feat: add more e2e tests for MPR and add test mode and extension (#3180)
* tests: add various e2e tests for MPR and measurements

wip

add cypress config

feat: add mode and extension for testing

add hp applied through search params

add MPR tests

apply review comments

add more e2e tests

update yarn lock

* fix unit tests failing
2023-02-17 15:04:07 -05:00
Alireza
95bf3a105b
chore: update vtk js to 26.4.0 (#3174) 2023-02-14 14:17:13 -05:00
Joe Boccanfuso
f791a4cafb
fix(ViewportGrid) fill blank viewports with display sets not yet in grid. (#3154)
* fix(ViewportGrid): In ViewportGrid, fill blank viewports with display sets not yet in grid.
ViewportGridService now allows off-screen viewports to remain so that
so as to maintain continuity if they were filled by the UI/user.

* PR feedback: moved getNumViewportPanes into the ViewportGridService API.

* PR feedback:
- renamed some variables
- proper import/export of IDisplaySet
- added some comments for clarification
- fixed broken e2e tests

* Some missed rename of Services.
2023-02-14 10:01:39 -05:00
Bill Wallace
ecfdc9a687
fix(typescript): Missed renames UIModalService and UserAuthenticationService (#3171) 2023-02-13 08:55:55 -05:00
Bill Wallace
8af0362d12
fix(typescript): rename services to fix typescript (#3165)
* fix: Rename services to lower camel case, hp, measure

* fix: Rename DisplaySetService instances to displaySetService

* fix: Rename CornerstoneViewportService to lower camel case

* fix: Added lower case segmentationService rename

* rename other services (#3166)

* rename uiDialogService

* rename toolGroupService

* rename uiNotificationService

* rename viewportGridService

* rename syncGroupService

* rename CornerstoneCacheService

* Fix a syntax error in hotkeys

* Fix a couple of rename issues that were missed

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-02-10 16:46:09 -05:00
Bill Wallace
7f799b8e3d
fix: Create typed services and allow lower case access to agree with naming conventions (#3141)
* fix: Add typed services

* fix: Typed services - PR changes

* remaining of the cineService and toolbarService renaming

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-02-07 14:31:55 -05:00
Bill Wallace
0e1a58da79
fix: Use @cornerstonejs/adapters (#3116)
Also update the sort series to be consistent, using a single version of the series sort, and fix an issue with longitudinal mode export.
2023-02-06 17:05:13 -05:00
Bill Wallace
980b44f18c
fix(misc): Update the data source name, provide a /datasources example customization for debug (#3036)
* fix(misc):Update the data source name, provide  a /datasources

Update the imports for a few things to match, to avoid 2 versions

Fix the datasources name

pr:Make the data source selector configurable

* Updated data source selector page as requested

* PR fixes
2023-02-03 16:56:27 -05:00
Alireza
123e3a569b
fix(Segmentation): bump packages to fix segmentation rendering (#3138)
* add test mode

* bump packages

* add reference lines

* update yarn lock

* fix netlify build

* fix num workers

* update year in doc
2023-02-03 09:33:28 -05:00
dxlin
f7c886878d
fix(Hotkeys): add firstImage and lastImage commands referenced by 'home' and 'end' hotkeys (#3127)
* -fix 'home' and 'end' hotkeys
  ->implement firstImage lastImage commands

* -extra comments

* -add check for compatible viewport in firstImage command
2023-01-24 15:43:27 -05:00
Joe Boccanfuso
58ae8690a7
fix: Clicking on measurement should highlight the measurement row in the measurement panel OHIF-433 (#3111)
* fix: OHIF-433 Clicking on measurement should highlight the measurement row in the measurement panel

Added selected flag to each OHIF measurement.
Listening to CS3D ANNOTATION_SELECTION_CHANGE to keep the selected flag in sync.

* fix: OHIF-433 Clicking on measurement should highlight the measurement row in the measurement panel

Fixed broken unit tests.

* PR feedback from Alireza:
- use MEASUREMENT_UPDATED event for selection changed
- added TODO to eventually have CS3D introduce the selected flag per annotation
- added MeasurementService._publishEvent

* PR feedback: now using _broadcastEvent
2023-01-13 13:57:18 -05:00
Joe Boccanfuso
a997198587
fix: app-config settings are ignored in OHIF v3 (#3114)
* fix: app-config settings are ignored in OHIF v3
github issue #3051

Remove default route from baked in routes if showStudyList is false.

* fix: app-config settings are ignored in OHIF v3
github issue #3051

PR feedback - simply remove default route from the baked in routes.

* fix: app-config settings are ignored in OHIF v3
github issue #3051

PR feedback - updated CS3D tools version
2023-01-12 16:38:12 -05:00
Alireza
1d1b33224a
feat: use wadors instead of streaming wadors for volume loading (#3109) 2023-01-11 07:19:27 -05:00
Joe Boccanfuso
9b0d542526
fix: rework inconsistencies in split button implementation(#3086)
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
The primary button will always be the layout grid selector and the MPR toggle is in the drop down menu.
This is the first step to later adding other (e.g. 3D) layout HPs to the menu.

Summary of changes/fixes:
- SplitButton now allows for its primary button to be any button component specified by a UI type.
- SplitButton passes a className to its primary button component to dictate how it should be rendered
based on its active/toggle status, hovering, menu visibility etc.
- The default menu item renderer for the SplitButton, renders acitve toggle items correctly.
- Items/buttons in the toolbar are now all the correct and same size.
- Added ToolbarService.getButtonComponentForUIType to fetch a button component for a given UI type.
- Spacing between toolbar items is now done at the Toolbar level to avoid double spacing and to ensure
uniform spacing.
- The drop down menu closes when clicking the primary button.
- Show a mouse down click effect when clicking the primary button.

Items to investigate still:
The following are all slightly contrary to the design specs of the UI:
- Is the click effect on the primary button satisfactory because with the hover border effect, the
button appears slightly smaller during the mouse down/up operation? (MEDIUM)
- On hover over the drop down button, the right-hand-side corners of the primary button appear
rounded and NOT square. Also the hover over the drop down button border effects make the primary
button appear smaller. (MEDIUM)
- Should there be hover effects when hovering over either tooltip of the SplitButton? (LOW)

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Fixed broken e2e tests.
data-cy and data-tool properties now passed down to primary button component.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

On drop down button hover, the primary button now stretches all the way right with no right border
and with square corners in the top and bottom right as per the toolbar spec.

The mouse down effect gives a full button look (i.e. no borders) with rounded corners all around and black text icon.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Documented that the primary button of a split button can specify a UI type.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Feedback from PR review to fix prettier formatting issue.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Added TODOs as per Bill's request in the PR.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Feedback from Alireza: reverted the layout selector and MPR tools to be separate toolbar items.

Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-01-06 15:00:23 -05:00
Bill Wallace
fb2a60ae19
feat: Allow multiframe volumes (#3089)
* Allow multiframe volumes

* feat:Allow display of multiframe volume
2023-01-05 20:26:26 -05:00
Bill Wallace
00e797801d
feat(imageLoader):Add an nth image loader strategy (#10) (#3044)
* feat(imageLoader):Add an nth image loader strategy (#10)

* Updates for PR for nth menu

* performance:Prior implementation was O(n^2), taking about 50 ms

* feat:Nth image loader, added docs as requested
2022-12-29 11:00:13 -05:00
Bill Wallace
9a03bde0ae
Fix/sr hydration non tracking (#3080)
* fix:DICOM SR hydration - remove redundancies

feat:Allow save and restore on non-tracking view

* PR comments
2022-12-29 10:13:06 -05:00
Bill Wallace
beb4517450
fix(grid):Grid service wasn't being reset (#3068)
* fix(grid):Grid service wasn't being reset

* fix(service):Fix the initial service state

Services with mode specific state differed in internal state between
initial and subsequent load.  This fix address that structurally by
allows the mode to store/manage service state, but makes the
responsibility of service state central to the service.
2022-12-09 10:58:01 -05:00
Alireza
42dca11ae3
fix: various bugs with v33 re cine and colors (#3052)
* fix various bugs

* feat: initial work for debug page

* change throw to console error for color lookup table

* update packages

* apply review

* apply review comments
2022-12-05 09:53:59 -05:00
Gabriel Lebaudy
71d736067d
fix: handle undefined instance object (#3042)
Some DisplaySets don't have a `instance` property, thus throwing an error at this location. 

This change fixes this issue.
2022-11-30 11:35:27 -05:00
Alireza
32bb7e4c1e
fix: sr module and add URL docs (#3034)
* fix sr module and add docs

* bump version
2022-11-23 11:43:46 -05:00
Alireza
bbfdda7fe7
feat: enhanced notifications and toolbar hover states (#3032)
* fix: button hover state and overlay colors in tmtv

* fix: styles for notificaionts
2022-11-21 22:35:25 -05:00
md-prog
558ba634fa
fix: Elliptical ROIs not being added when created outside image (#3019) 2022-11-21 16:42:23 -05:00
Alireza
87eab39768
fix: remaining bugs for MPR and toolbar icon colors (#3026)
* feat: warn for overlapping segments

* fix: typo

* refactor mpr toggle and stack sync

* fix: wip for more general mpr

* fix: tool groups for mpr

* fix: changing of viewport id

* fix: viewport Id for the seg viewports

* fix

* update cornerstone version
2022-11-21 10:44:19 -05:00
Alireza
83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
Ouwen Huang
eb7874bd0b
feat: added useCursors, useCPURendering, and maxCacheSize config params (#2988) 2022-11-07 10:05:56 -05:00
Alireza
3d0d09e1bc
fix: add the quotation exclusion for accept header for our configs (#3006)
* fix: revert the quotation inclusion for accept header to be off by default

* changed all configs
2022-11-04 09:01:34 -04:00
Zaid Safadi
6b1f9f35a8
fix: wado-rs retrieve metadata doesn't work with .NET servers #2969 (#2970)
* fix: wado-rs retrieve metadata doesn't work with .NET servers (issue #2969)

* add configuration to ommit the quots from multipart request
2022-11-03 11:19:35 -04:00
md-prog
17257ff0df
upgrade @cornerstonjs/core to 0.16.8 (#2980) 2022-10-14 16:17:09 -04:00
md-prog
dcf3fdbed3
dcmjs package reference upgraded to 0.28.3 (#2978)
Just a package version upgrade.
2022-10-14 14:48:14 -04:00
md-prog
b93067b6a2
feat: Annotation and Measurements support on multi-frame DICOM (#2973)
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy

* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number

* fixed minor React bugs (errors on console)

* fixed React's console bugs that are logged for some series that doesn't have "description"

* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)

* metadata parser fix - providing default values of imagePlaneModule

* measurement SR support on multi-frame DICOM

* bug fix - jumping to the selected measurment on multi-frame DICOM

* upgrade dcmjs dependency to 2.8.1

* StudySummary component - allow "description" to be null

* make getUIDsFromImageID() method public from MetadataProvider

* imageId usage fixes to be more stable

* change the variable name to be more meaningful

* fix metaProvider importing

* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.

* use Array.findIndex instead of plain for loop

* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.

* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits

* simple code refactoring

* refactoring for checking undefined values - mappedAnnotations

* remove unreachable code

* code refactoring  - prefer conditional chaining

* fix how we access imageIds of viewport (StackViewport)
2022-10-13 11:07:56 -04:00
Bill Wallace
e401358887
fix(hp): Make the updated hanging protocol compatible with modes (#2971)
There had been a change made to make the hanging protocols
auto initialize, but that caused problems on mode init
because the couldn't specify the hanging protocols any longer.
THis change restores that, and also improves the API a little
bit by allowing the display set selectors to be specified by id
instead of positionally.

fix(hp):PR Review Comments

fix(hp):Unit test and docs
2022-10-05 08:32:54 -04:00
Bill Wallace
06feca1f4a
fix(cornerstoneCache):Race condition on cache notification (#2900) 2022-09-23 16:24:18 -04:00
Alireza
5f480ff746
feat: explicit layout apply via HangingProtocolService (#2936)
* feat: add more types to HP service

* change hp to have apply protocol

* feat: mpr initial work

* apply protocol by id

* feat: mode should be able to apply protocol directly

* fix: wrong inheritance for viewports drag and drop

* apply review comments
2022-09-20 23:40:26 -04:00
Bill Wallace
dc04296cfd
feat(synchronizers): Add registration for synchronizers (#2861)
doc(hp):Update the sync group/hanging protocol documentation
2022-09-15 23:23:17 -04:00
Bill Wallace
0090605cf7
fix: various type issues and error handlings (#2831)
* fix(error):Fix a few error conditions, mostly around seriesNumber

* apply few fixes
2022-09-08 22:09:28 -04:00
Alireza
71f5fa8e2f
fix: left right hotkeys and remove non working ones (#2922)
* fix: constant should be enums in cs3d

* remove non working hotkeys for now
2022-09-08 22:02:20 -04:00
Alireza
83264bb5a5
fix: imagScrollbar should not stop cine if not playing (#2920) 2022-09-08 14:42:25 -04:00
Alireza
a16d7e1402
fix: bump packages for crosshairs to get fixed (#2917) 2022-09-08 09:03:37 -04:00
Bill Wallace
e1d366e1e1
feat: make hanging protocol work on displaySets instead of series (#2837)
* feat(HP): Apply HP to display sets, fix race condition

* fix: displaySetService no event not needed (#2912)

* fix various styles and renamings

* feat: refactored hp service

* fix: use HP service event for viewport grid

* remove unnecessary doc

* fix test

* apply review comment

* fix: segmentation creation

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2022-09-07 11:59:11 -04:00
Nigel
96986f992a
bump: cornerstrone tools and core version to fix terser bug (#2881) 2022-08-19 18:42:20 -04:00
Alireza
10b4ed5f8c
feat: new Total Metabolic Tumor Volume tmtv (#2866)
* fix: ptDisplaySet metadata problem

* fix: typo in xhrHeader field

* fix: temporary fix for crosshairs on reload data

* fix hotkey bug for input fields

* upgrade docusarusu to stable release

* circle ci node upgrade

* cypress node upgrade

* bump node in netlify

* bump node version

* remove versioned docs

* update resources

* fix: webpack injection of plugins

* fix meaningful label for panels

* add reviews and fix cli for creation

* copy over chunks if exists in the build

* edit templates

* edit templates

* fix yarn lock

* fix(plugin):Deploy on windows is broken

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-08-17 15:13:59 -04:00
Alireza
ae897c47e0
fix: typo in accept headers (#2858) 2022-08-02 15:23:35 -04:00
Erik Ziegler
bd1c38c00c
feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: cs3d tools and toolGroups (#20)

* add more tools to work with cs3d mode

* fix hotkeys

* add stack manager usage for stach viewports

* add image scrollbar

* wip viewport overlay

* fix toAnnotation schema for tools

* fix the unnecessary size change that triggered resize

* hanging protocol improvement to allow unmatched errors

* study description matching for hanging protocol

* fix the displaysetOptions to work

* fix handle the active tool when a new viewport is added

* fix separate toolGroups for mode

* apply review comments

* apply review comments

* yarn lock

* feat: overlay component (#21)

* fix default displayset options

* add viewport overlay

* apply review comments

* feat: loading and orientation indicators (#22)

* add loading indicator

* add orientation marker initial work

* apply review comments

* fix: orientation markers (#23)

* finished the orientation markers

* fix various broken cypress tests

* apply review comments

* update yarn lock

* feat: re-working measurement tracking mode with cornerstone3d (#2805)

* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: Add Measurement tracking mode with cs3D (#2789)

* feat: first render for cornerstone3d tracked viewport

* make tool active work

* wip for SR extension

* renamed dicom sr to cornerstone dicom sr

* remove cornerstone from dicom pdf and video

* move dicom sr logic to sr extension

* feat: Add hydration for the length tool

* fix SR display tool for length using cs3d

* fix default config

* fix: various bugs with sr viewport and tracking

* fix promptying to continue tracking for when SR is created

* feat: add keep trackign of unique identifiers

* fix hydration for same imageIds

* feat: Add SR toolGroup creation on modeEnter

* feat: remove the need for separate mapper for SR hydration

* add SR display for ellipse

* handle hydration of elliptical ROI tool

* remove cornerstone extension

* add arrow mapping

* feat: Add ArrowAnnotate SR display and hydration

* apply review comments

* apply review comments

* move viewport labels to the viewportData

* apply review comments

* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)

* fix: integration cypress tests with cornerstone3D

* revert to addOrUpdate as it makes more sense

* fix local drag and drop

* fix tests

* move dicomLoaderService to cornerstone extension

* fix various import bugs

* fix bug for local PT series

* fix various unit tests

* bump cs3d versions

* add angle and magnify tool

* bump dependencies to avoid broken peerDeps

* feat: add initial work for capture using cs3d

* feat: show annotations on the image capture

* feat: add svg layer export

* feat: Add CINE Tool

* feat: remove unnecessary viewport rendering for cine state changes

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>

* docs: modify and improve documentation (#2800)

* cleanup docs versionings

* feat: Add all version explanations

* version docs for 3.0

* wip for changing docs

* wip for updated docs

* add utility module documentation

* fix demo with nohoisting of history

* add slides and video to resources

* apply review comments

* fix: drag and drop SR into SR viewport (#2803)

* update yarn lock

Co-authored-by: Erik <erik.sweed@gmail.com>

* update pathnames to match v3-stable

* update the e2e pathname

* fix: various bugs with regard to tracking workflow (#2811)

* fix: various issues with measurement panel

* fix: update default tool style for annotations

* fix: annotatoin label getting removed

* feat: Add backward compatibility for SR hydration with legacy cornerstone

* fix: cursors and ellipse ROI max style

* fix: ArrowAnnotate SRDisplay

* apply review comments

* bump package versions

* fix: bugin rehydration of SR

* fix: e2e tests

* fix active viewport thickness and arrowTool ui

* add readme for measurement tracking

* use uploaded image for readme

* add back images

* try to fix e2e test

* fix: window level presets hotkeys

* Update README.md

* update yarn lock

* feat: volume api and TMTV mode (#2817)

* feat: volumeAPI and TMTV mode

* feat: use cs3d cache service to obtain viewportData

* wip for volume api

* wip: fusion viewport

* feat: add blend mode option

* wip for image scrollbar

* fix drag and drop thumbnail

* wip for image scrollbar for voluems

* fix: element mismatch bug for scroll

* feat: Add image scrollbar to volumes

* feat: add syncGroups to volume api

* feat: add tmtv mode initial setup

* feat: add initial image options for the stack viewports

* feat: Add custom load strategy for volume viewports via HP

* apply review comments

fix: Jump presets cs3d (#2812)

* feat: Add JumpPreset to OHIF for Cornerstone3D

* fix: accessing viewport service from servicesManager

feat: volume API and TMTV mode (#2814)

* fix: do not display overlays on mip viewports

* feat: add optional disableCommands for toggle buttons

* fix: toggleCrossharis

* feat: config the crosshairs

* feat: add PetSUV Panel for changing metadata

* feat: initial work for the rectangleROIThreshold panel

* wip: measurement service

* roi threshold working

* feat: Add displayText to segmentations

* feat: add remove segmentation

* feat: add csv export

* feat: add RT export for annotations in tmtv mode

* fix: fusion to use pt in tmtv mode and measuremet mappings

* fix: various bugs

* apply review comments

* apply review comments

* feat: add fusion color maps

* add readme to tmtv mode

* Update README.md

* fix: try to fix build

* fix unit tests

* Update README.md

* feat: add about to the panel

* fix: changing strategy in roi panel

* apply review comments

* update package versions

* wip for stackPrefetch

* fix: cornerstone3d hydration and renaming (#2818)

* update readme

* renamed cornerstone extension

* wip for renaming cornerstone3D variables

* wip for renaming cornerstone3D variables

* wip for fixing bugs for SR viewport

* fix: jumpToMeasurement and initial label after hydration

* fix: fileName capitalization

* feat: use the new prefetch stack in the cs3d (#2820)

* feat: use the new prefetch stack in the cs3d

* use viewport scroll api for stack viewport

* fix cine stop when scrollbar changes

* feat: use new prefetch events

* fix loading state to not show repeatedly

* fix: various bugs for tmtv mode thresholding and new icons (#2823)

* feat: make tmtv mode available in worklist

* feat: add new icons for tmtv mode

* feat: add fusion color icon

* fix: parallel scale calculation

* fix: bump Cornerstone to get large image support working

* fix: Fix issues with CPU viewport flipping, including config files

* fix: bump cornerstone to fix magnify tool

* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport

* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys

* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors

* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)

Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.

* bump: dependency versions to fix hydration bugs (#2848)

* bump: dcmjs version to fix hydration bugs

* try to fix tests

* bump dependency versions

Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 12:39:04 -04:00
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00