Commit Graph

310 Commits

Author SHA1 Message Date
Alireza
83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
md-prog
17257ff0df
upgrade @cornerstonjs/core to 0.16.8 (#2980) 2022-10-14 16:17:09 -04:00
md-prog
dcf3fdbed3
dcmjs package reference upgraded to 0.28.3 (#2978)
Just a package version upgrade.
2022-10-14 14:48:14 -04:00
md-prog
b93067b6a2
feat: Annotation and Measurements support on multi-frame DICOM (#2973)
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy

* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number

* fixed minor React bugs (errors on console)

* fixed React's console bugs that are logged for some series that doesn't have "description"

* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)

* metadata parser fix - providing default values of imagePlaneModule

* measurement SR support on multi-frame DICOM

* bug fix - jumping to the selected measurment on multi-frame DICOM

* upgrade dcmjs dependency to 2.8.1

* StudySummary component - allow "description" to be null

* make getUIDsFromImageID() method public from MetadataProvider

* imageId usage fixes to be more stable

* change the variable name to be more meaningful

* fix metaProvider importing

* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.

* use Array.findIndex instead of plain for loop

* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.

* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits

* simple code refactoring

* refactoring for checking undefined values - mappedAnnotations

* remove unreachable code

* code refactoring  - prefer conditional chaining

* fix how we access imageIds of viewport (StackViewport)
2022-10-13 11:07:56 -04:00
Alireza
55a1704e4a
feat: upgrade tailwind to version 3 (#2933)
* initial upgrade commit for tailwind

* fix: inconsistensies in button

* fix: various places with conflicts

* final fixes

* fix: dialog header color

* apply review
2022-09-19 20:02:53 -04:00
Alireza
71f5fa8e2f
fix: left right hotkeys and remove non working ones (#2922)
* fix: constant should be enums in cs3d

* remove non working hotkeys for now
2022-09-08 22:02:20 -04:00
Alireza
a16d7e1402
fix: bump packages for crosshairs to get fixed (#2917) 2022-09-08 09:03:37 -04:00
Nigel
96986f992a
bump: cornerstrone tools and core version to fix terser bug (#2881) 2022-08-19 18:42:20 -04:00
Alireza
10b4ed5f8c
feat: new Total Metabolic Tumor Volume tmtv (#2866)
* fix: ptDisplaySet metadata problem

* fix: typo in xhrHeader field

* fix: temporary fix for crosshairs on reload data

* fix hotkey bug for input fields

* upgrade docusarusu to stable release

* circle ci node upgrade

* cypress node upgrade

* bump node in netlify

* bump node version

* remove versioned docs

* update resources

* fix: webpack injection of plugins

* fix meaningful label for panels

* add reviews and fix cli for creation

* copy over chunks if exists in the build

* edit templates

* edit templates

* fix yarn lock

* fix(plugin):Deploy on windows is broken

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-08-17 15:13:59 -04:00
Erik Ziegler
bd1c38c00c
feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: cs3d tools and toolGroups (#20)

* add more tools to work with cs3d mode

* fix hotkeys

* add stack manager usage for stach viewports

* add image scrollbar

* wip viewport overlay

* fix toAnnotation schema for tools

* fix the unnecessary size change that triggered resize

* hanging protocol improvement to allow unmatched errors

* study description matching for hanging protocol

* fix the displaysetOptions to work

* fix handle the active tool when a new viewport is added

* fix separate toolGroups for mode

* apply review comments

* apply review comments

* yarn lock

* feat: overlay component (#21)

* fix default displayset options

* add viewport overlay

* apply review comments

* feat: loading and orientation indicators (#22)

* add loading indicator

* add orientation marker initial work

* apply review comments

* fix: orientation markers (#23)

* finished the orientation markers

* fix various broken cypress tests

* apply review comments

* update yarn lock

* feat: re-working measurement tracking mode with cornerstone3d (#2805)

* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: Add Measurement tracking mode with cs3D (#2789)

* feat: first render for cornerstone3d tracked viewport

* make tool active work

* wip for SR extension

* renamed dicom sr to cornerstone dicom sr

* remove cornerstone from dicom pdf and video

* move dicom sr logic to sr extension

* feat: Add hydration for the length tool

* fix SR display tool for length using cs3d

* fix default config

* fix: various bugs with sr viewport and tracking

* fix promptying to continue tracking for when SR is created

* feat: add keep trackign of unique identifiers

* fix hydration for same imageIds

* feat: Add SR toolGroup creation on modeEnter

* feat: remove the need for separate mapper for SR hydration

* add SR display for ellipse

* handle hydration of elliptical ROI tool

* remove cornerstone extension

* add arrow mapping

* feat: Add ArrowAnnotate SR display and hydration

* apply review comments

* apply review comments

* move viewport labels to the viewportData

* apply review comments

* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)

* fix: integration cypress tests with cornerstone3D

* revert to addOrUpdate as it makes more sense

* fix local drag and drop

* fix tests

* move dicomLoaderService to cornerstone extension

* fix various import bugs

* fix bug for local PT series

* fix various unit tests

* bump cs3d versions

* add angle and magnify tool

* bump dependencies to avoid broken peerDeps

* feat: add initial work for capture using cs3d

* feat: show annotations on the image capture

* feat: add svg layer export

* feat: Add CINE Tool

* feat: remove unnecessary viewport rendering for cine state changes

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>

* docs: modify and improve documentation (#2800)

* cleanup docs versionings

* feat: Add all version explanations

* version docs for 3.0

* wip for changing docs

* wip for updated docs

* add utility module documentation

* fix demo with nohoisting of history

* add slides and video to resources

* apply review comments

* fix: drag and drop SR into SR viewport (#2803)

* update yarn lock

Co-authored-by: Erik <erik.sweed@gmail.com>

* update pathnames to match v3-stable

* update the e2e pathname

* fix: various bugs with regard to tracking workflow (#2811)

* fix: various issues with measurement panel

* fix: update default tool style for annotations

* fix: annotatoin label getting removed

* feat: Add backward compatibility for SR hydration with legacy cornerstone

* fix: cursors and ellipse ROI max style

* fix: ArrowAnnotate SRDisplay

* apply review comments

* bump package versions

* fix: bugin rehydration of SR

* fix: e2e tests

* fix active viewport thickness and arrowTool ui

* add readme for measurement tracking

* use uploaded image for readme

* add back images

* try to fix e2e test

* fix: window level presets hotkeys

* Update README.md

* update yarn lock

* feat: volume api and TMTV mode (#2817)

* feat: volumeAPI and TMTV mode

* feat: use cs3d cache service to obtain viewportData

* wip for volume api

* wip: fusion viewport

* feat: add blend mode option

* wip for image scrollbar

* fix drag and drop thumbnail

* wip for image scrollbar for voluems

* fix: element mismatch bug for scroll

* feat: Add image scrollbar to volumes

* feat: add syncGroups to volume api

* feat: add tmtv mode initial setup

* feat: add initial image options for the stack viewports

* feat: Add custom load strategy for volume viewports via HP

* apply review comments

fix: Jump presets cs3d (#2812)

* feat: Add JumpPreset to OHIF for Cornerstone3D

* fix: accessing viewport service from servicesManager

feat: volume API and TMTV mode (#2814)

* fix: do not display overlays on mip viewports

* feat: add optional disableCommands for toggle buttons

* fix: toggleCrossharis

* feat: config the crosshairs

* feat: add PetSUV Panel for changing metadata

* feat: initial work for the rectangleROIThreshold panel

* wip: measurement service

* roi threshold working

* feat: Add displayText to segmentations

* feat: add remove segmentation

* feat: add csv export

* feat: add RT export for annotations in tmtv mode

* fix: fusion to use pt in tmtv mode and measuremet mappings

* fix: various bugs

* apply review comments

* apply review comments

* feat: add fusion color maps

* add readme to tmtv mode

* Update README.md

* fix: try to fix build

* fix unit tests

* Update README.md

* feat: add about to the panel

* fix: changing strategy in roi panel

* apply review comments

* update package versions

* wip for stackPrefetch

* fix: cornerstone3d hydration and renaming (#2818)

* update readme

* renamed cornerstone extension

* wip for renaming cornerstone3D variables

* wip for renaming cornerstone3D variables

* wip for fixing bugs for SR viewport

* fix: jumpToMeasurement and initial label after hydration

* fix: fileName capitalization

* feat: use the new prefetch stack in the cs3d (#2820)

* feat: use the new prefetch stack in the cs3d

* use viewport scroll api for stack viewport

* fix cine stop when scrollbar changes

* feat: use new prefetch events

* fix loading state to not show repeatedly

* fix: various bugs for tmtv mode thresholding and new icons (#2823)

* feat: make tmtv mode available in worklist

* feat: add new icons for tmtv mode

* feat: add fusion color icon

* fix: parallel scale calculation

* fix: bump Cornerstone to get large image support working

* fix: Fix issues with CPU viewport flipping, including config files

* fix: bump cornerstone to fix magnify tool

* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport

* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys

* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors

* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)

Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.

* bump: dependency versions to fix hydration bugs (#2848)

* bump: dcmjs version to fix hydration bugs

* try to fix tests

* bump dependency versions

Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 12:39:04 -04:00
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00
Bill Wallace
82df3eac03
feat(PDF):Add PDF viewer (#2730)
Display DICOM encapsulated PDF documents in a PDF viewer.
Addressed the remaining PR comments, and am merging this.
2022-04-04 09:48:14 -04:00
Bill Wallace
f3822f98a3
Fix palette colour display in OHIF v3 (#2731)
* fix(OHIFv3):Fix palette colour data display

* PR comments - added params description
2022-03-11 11:18:56 -05:00
Alireza
ea390cc5d8
fix: icon styling with className (#2714)
* fix: icon styling with className

* docs: Add resources to docs
2022-02-17 11:23:38 -05:00
Alireza
5c8ee7f906
feat: OHIF-v3 UI Component Library (#2653)
* wip on storybook as a replacement for using UI components in docusaurus, since it causes too many problems

* fix: storybook webpack config

* feat: add more stories

* feat: add more stories

* feat: add more stories

* feat: fix logo and babel runtime error

* feat: move to mdx docs for ui

* feat: enhanced mdx for header and styles

* feat: Add button usecases

* feat: Add buttonGroup docs

* feat: Add docs and use case to cine and contex menu

* feat: fix decorators

* feat: add header and dropdown docs

* feat: add Icon and input docs

* feat: add more docs

* feat: add more stories

* fix: feedback section

* feat: Add doc page

* feat: Add typography and color stories

* yarn lock

* add analytics to v3-ui

* new banner image

* new viewport component

* update review comments
2022-02-10 14:08:34 -05:00
Bill Wallace
0e2c31939c
feat(OHIFv3):Add static e2e data (#2665)
This change wraps the E2E test data into a github repository, which is then included in the test builds as static data.
That makes running the e2e tests as simple as:
yarn test:e2e:server
yarn test:e2e

without any need to have docker etc installed/running.
2022-01-31 14:29:20 -05:00
Bill Wallace
72bb074f21
feat: Add theme/config-point capability and docs. (#2641)
This is the initial addition of the config point settings to allow run time loading of GUI settings via "theme" files/parameters.
The intent is to add an example PR that shows when to use config point, how to configure it, write documentation for it etc.
2022-01-27 12:09:36 -05:00
Erik Ziegler
ef06b7683f
fix: Address weird prefetching issues (#2574)
* fix: Address weird prefetching issues

* bump cornerstoneTools version

* remove debugger
2021-10-04 09:27:50 +02:00
Erik Ziegler
3c9f3cb273
feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2538)
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF

* fix: Set empty public path

* perf: Add webpackPrefetch tags to lazy loaded components

* Switch to using webpack alias to use dynamic import version of WADO Image Loader

* fix lockfile

* prevent polyfilling zlib

* bump to wado image loader 4.0.3 with fix for public path
2021-09-24 09:06:52 +02:00
Erik Ziegler
00d7192423 docs: Remove UI components for now, we will use Storybook instead later. Clean up links and introduction. (#2520) 2021-08-24 17:53:03 -04:00
Erik Ziegler
3220af737c
fix(tailwind): Ensure tailwind properly purges unused utility classes (#2485) 2021-07-26 13:22:25 +02:00
Erik Ziegler
ca7506c5f0 Try to get views to work for component library 2021-07-21 13:16:50 +02:00
Erik Ziegler
ff28a2264b fixes for hotkeys usage in docusaurus 2021-07-21 12:58:15 +02:00
Erik Ziegler
d6877cfcf9 add react-docgen to provide props tables for UI component library 2021-07-15 00:04:36 +02:00
Erik Ziegler
97805df68c reorganization to support SSR for component library in docusaurus 2021-07-14 15:26:06 +02:00
Erik Ziegler
09469e6ac5 wip on switching from docz to docusaurus 2021-07-13 23:48:16 +02:00
Erik Ziegler
c20d658836 bump mousetrap version 2021-07-13 14:07:34 +02:00
Erik Ziegler
825e13bcf3 chore: Upgrade to webpack 5, fix conflicting issues with react-router under docusaurus with yarn workspaces 2021-07-08 15:23:09 +02:00
Erik Ziegler
de412f2eef Merge branch 'feat/v2-main' into feat/v2-main-docusaurus-netlify-monorepo 2021-07-08 10:41:49 +02:00
Dan Rukas
c3ca60533a
New image assets for v3 docs (#2463)
* New image assets for docs

* Type headers reduced and other small style fixes
2021-07-05 20:23:44 -04:00
Alireza
3fc56f373c feat: Add measurement tracking user guide 2021-07-01 23:24:03 -04:00
Alireza
39ff15aeaf fix: broken links to navigate between pages 2021-07-01 17:41:04 -04:00
Alireza
87de2620e3 feat: Add click to zoom for images 2021-06-30 21:37:09 -04:00
Alireza
f0c5755cd0 feat: Change navbar links to open internally 2021-06-24 12:40:06 -04:00
Erik Ziegler
e7b32cc51e
feat: Support for OpenID Connect (#2431)
* feat: Add OpenID Connect support, speed up docker rebuilds

* fix: Switch Google Cloud API URL to v1

* chore: Remove redux-oidc and use our own components instead
2021-06-23 20:41:27 +02:00
Erik Ziegler
936ae14ea0 fix: deployment previews for UI docs and Core docs
- workaround for docz issue https://github.com/pedronauck/docz/issues/1635
- tailwind purge
- fix docusaurus basename and docz missing props
2021-06-16 07:46:23 -04:00
Alireza
4971937171 versioned docs v1, and moved docs v2 2021-06-15 16:38:40 -04:00
Alireza
6e9381860b docs v1 before versioning 2021-06-15 15:54:55 -04:00
Alireza
fdb6ca41d6
feat: Support for local DICOM drag and drop (#2445)
* Added drag and drop from local and local data source

* fix: dicom SR drag and drop from local
2021-06-15 10:19:45 -04:00
Erik Ziegler
99b8dc4759
feat: Add White Labelling, Hanging Protocols, and tons of Extensions / Mode fixes
* modified

* new files in existing extensions/libraries/modes

* fixed bugs and tests

* Clean up

* fix: viewport display fixed

* Fixed configs for deployment

* Removed unnecessary files and functions

* Fixed default HP module

* Added white labelling

* Fixed hash routing

* Removed unnecessary routers

Co-authored-by: Alireza Sedghi <ar.sedghi@gmail.com>
2021-05-28 14:32:48 -04:00
Erik Ziegler
0db81b30f3
chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
Erik Ziegler
e0a31caebf
fix: Call load if necessary before rehydration prompt. Jump to first measurement on rehydration (OHIF-369) (#2184) 2020-11-25 13:35:43 +01:00
Danny Brown
2f4cba28a5
fix: update DICOMSR and Measurement Panel copy to use L/W (#2174)
* fix: update DICOMSR and Measurement Panel copy to use L/W

* functional viewport

* support the active viewport for snapshot

* Support empty viewport case

* bump cs-tools to pick up misc. fixes
2020-11-18 00:14:52 -05:00
Danny Brown
23764f9b82
fix: bump cornerstone-tools version to update rectangleROI behavior (#2090) 2020-10-05 22:05:12 -04:00
dannyrb
365ba2fa72 bump react-cornerstone-viewport version 2020-08-20 12:30:38 -04:00
Igor Octaviano
8cea1a04d6
OHIF-333: Split Button (#1988)
* ohif-333: add component foundation

* ohif-333: add expandable content and mocked data

* ohif-333: improve ListMenu component for the new toolbar button and add radio behavior

* ohif-333: add click outside behavior and update primary and secondary props

* ohif-333: separate classes from markup

* ohif-333: fix layout issues

* ohif-333: extract window level component

* ohif-333: update component returns

* ohif-333: update chevron thickness

* ohif-333: remove is active prop

* Delete lerna-debug.log

* ohif-333: clean toolbar and use example in ui package

* ohif-333: update styles to avoid word break

* ohif-333: fix ui package build

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-19 15:49:00 -04:00
James Petts
42b02a62d3
OHIF-326, export as CSV. (#1976) 2020-08-19 15:31:25 -04:00
Igor Octaviano
ef163cd702
Fix broken UI package build (#1990)
* Use path instead of alias

* Add missing pacakges

* Use path in viewers

* Use path in contextProviders

* Add base to config

* Add conditionals for window

* Copy config to avoid breaking build

* Update and lock versions

* Update lock file

* Remove scaling config

* Fix broken versions of react date

* Fix broken dev
2020-08-14 14:25:08 -04:00
Erik Ziegler
3d48a2a2c7 chore: Update react-hot-loader to avoid crashes during hot loading of workspace modules 2020-07-24 22:15:39 +02:00
James Petts
5e00020fe3
OHIF-67: Fix Magnify issues by updating CornerstoneTools (#1923) 2020-07-24 21:51:52 +02:00
James Petts
32e28d2090
Arrow Annotate workflow updates. (#1921) 2020-07-24 15:34:10 +01:00
James Petts
a4f286feee
[OHIF 284] - JumpToMeasurement + prevent layout change on scroll Prevent layout change on scroll (#1889)
* No more setting on debounce, jumpToMeasurement service set up.

* Fix bug causing a race condition sometimes if you click super fast.

* Optimise rendering of Tracking viewport slightly.

* element => targetElement

* Remove complete TODO

* Respond to reviewer comments.

* Fix e2e workflow.

* Fix regression that removed highlighting on jump to.

* Make sure jump to works from panel as well as viewport.

* Fix typo and remove debugger.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-22 19:40:40 +02:00
James Petts
3eba027003
[OHIF-288] Rehydrating SRs is missing Labels (#1885)
* WIP

* Finish OHIF-288, need to update dcmjs.

* Remove unused copied resources.

* Cleaned up label import code.

* Update for dcmjs Findings -> Finding.

* Update dcmjs

* Remove debuggers

* Respond to reviewer comments.

* update dcmjs version

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-10 15:11:22 -04:00
James Petts
ce40f04f2e
[OHIF-295] - Esc button should stop the creation of a measurement or annotation (#1883)
* WIP, need to fix arrow making measurement

* Update cornerstoneTools to fix cst arrow annotate event bug.
2020-07-10 15:00:10 -04:00
Danny Brown
86327cd808
bump RCV version and use new prop to control resize/refresh behavior (#1869) 2020-07-04 13:25:23 -04:00
James Petts
4dfe144bf8
[OHIF-251] - Double click to maximise viewport/ revert to previous layout. (#1860)
* WIP

* double click to maximise implemented at the viewport grid layer.

* Remove memory of cached layout when the layout is changed, or a different displaySet is set.

* WIP fix double click for cornerstone.

* Update CST

* Prevent maximising when double clicking the action bar

* Update extensions/dicom-sr/src/OHIFCornerstoneSRViewport.js

* Apply suggestions from code review

* Fix conflicts.

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-03 18:12:33 +01:00
James Petts
61fc093fc5
[OHIF-248] - Update cornerstoneTools version to get handle rendering improvements. (#1854)
* Only process SR on consumption of viewport.

* Hide handles whilst moving + correct hide handles on hover.

* Up CST version

* Update cst

* Remove added cornerstone viewport checks
2020-07-03 10:51:38 +01:00
Igor Octaviano
a156eadcb7
OHIF-208 (#1842)
* Set measurement as active

* Add basic dialog component

* Update styles and prop types

* Jump to image

* Update dialog

* Format date

* Update summary to use primary modalities

* delete empty studySummary page

* add missing PropTypes import

* fix for accidental sync'd viewports

* CR Updates

* CR Update avoid cache of measurements

* Use get measurement

* Add comment to edit function

* Remove request and merge modalities from series

* Update dependency: react-cornerstone-viewport@2.3.9

react-cornerstone-viewport
  * @ohif/extension-cornerstone: 2.3.8 → 2.3.9
  * @ohif/extension-dicom-sr: 2.3.8 → 2.3.9

* Update extensions/measurement-tracking/src/panels/PanelMeasurementTableTracking/index.js

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>

* Add debugs

* remove console.debug

* Update frameindex to imageindex

* Use new rcv debounced function

* Fix hovering

* Update dialog text

* Dismiss dialogs on esc

* Update dependency: react-cornerstone-viewport@3.0.0

react-cornerstone-viewport
  * @ohif/extension-cornerstone: 2.3.9 → 3.0.0
  * @ohif/extension-dicom-sr: 2.3.9 → 3.0.0

* OHIF-237

* remove console.debug

* Remove dead code brought in from rebase

* EmptyViewport should not display a message

* Remove more dead code from rebase

* fix variable naming

* remove unused hook

* bump yarn lock

* formatting

* Add arrow dialog

* Filter based on trackedSeries

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-07-02 16:53:38 -04:00
James A. Petts
7c3c717d33 Update dcmjs 2020-07-01 14:56:25 +01:00
James A. Petts
e3f2e26e3b Render text properly, render arrow + freetext. Need to move textboxes appropriately. 2020-07-01 11:59:29 +01:00
igoroctaviano
7f6aa0e260 Update dependency: cornerstone-tools@4.16.1
cornerstone-tools
  * @ohif/core: 4.16.0 → 4.16.1
  * @ohif/extension-cornerstone: 4.16.0 → 4.16.1
  * @ohif/extension-dicom-rt: 4.16.0 → 4.16.1
  * @ohif/extension-dicom-segmentation: 4.15.1 → 4.16.1
  * @ohif/extension-dicom-sr: 4.16.0 → 4.16.1
  * @ohif/extension-measurement-tracking: 4.15.1 → 4.16.1
  * @ohif/extension-vtk: 4.16.0 → 4.16.1
  * @ohif/viewer: 4.16.0 → 4.16.1
2020-06-30 21:55:59 -03:00
igoroctaviano
a197b887fb Merge branch 'feat/v2-main' of github.com:OHIF/Viewers into feat/ohif-125 2020-06-26 12:38:18 -03:00
igoroctaviano
e9696894a9 Add error boundary 2020-06-26 10:26:50 -03:00
Danny Brown
0264e5998d
Merge branch 'feat/v2-main' into feat/OHIF-177 2020-06-25 16:17:50 -04:00
James Petts
6aac69e1ba
OHIF-176: v2 - Render non-tracked measurements as a dashed lines. (#1805)
* Render non-tracked measurements as a dashed line.

* bump CST version.

* Update extensions/measurement-tracking/src/viewports/TrackedCornerstoneViewport.js

remove tracked series console log

* Remove empty console log

* Remove debugger

* Remove debugger

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-06-25 17:46:17 +01:00
James A. Petts
74c1462271 Working local download, STOW to PACS an view in SR Viewport. 2020-06-25 17:21:03 +01:00
Erik Ziegler
67508f6667 fix: Make docker build properly 2020-06-23 12:36:43 +02:00
dannyrb
570424e3e9 Add support for LayoutSelector 2020-06-15 23:38:48 -04:00
dannyrb
66e8f7a592 bump docz version 2020-06-04 12:37:05 -04:00
dannyrb
74edfb0913 fix incorrect react-dnd backend 2020-06-03 15:08:19 -04:00
dannyrb
ecb458e37c bump yarn lock after gatsby version updates 2020-06-03 14:07:24 -04:00
dannyrb
87f3921492 update yarn lock 2020-06-03 12:41:38 -04:00
dannyrb
870489be1d Test state machine hook 2020-05-27 21:25:44 -04:00
dannyrb
11a4d4227d Pull in correct context; add xstate package 2020-05-27 08:21:58 -04:00
dannyrb
d557acbb40 Support for additional "tracking" mode 2020-05-26 09:03:58 -04:00
dannyrb
db76eac047 wire up UI Services 2020-05-23 23:38:20 -04:00
dannyrb
913f9589e5 fix config; update yarn.lock 2020-05-20 09:06:50 -04:00
dannyrb
1cd6b6881a upgrade react-router and react-router-dom to gain access to new hooks 2020-05-19 23:47:43 -04:00
Erik Ziegler
f3f50d11fe Fixes after rebasing 2020-05-15 14:29:27 +02:00
Erik Ziegler
70b7158c9b StudyBrowser almost works 2020-05-15 13:09:46 +01:00
dannyrb
599204176c Add drag and drop provider 2020-05-15 13:05:55 +01:00
dannyrb
26450644ab add react-dnd 2020-05-15 13:04:54 +01:00
Erik Ziegler
d4f51c5e3c Work on adding SOPClassHandler module based on default behaviour currently in OHIF 2020-05-15 13:01:55 +01:00
dannyrb
e39d4d57d4 add query-string as a dependency 2020-05-15 13:01:24 +01:00
Rodrigo Antinarelli
01b314522d feat: New @ohif/viewer project structure + routes (#1674)
* fix pagination size

* clean up, start a very basic route configuration

* quick navigation between routes

* configure webpack to read .env variables

* Move container components to Routes directory

* Fix naming of recipe file

* Clean up source folder

* update yarn.lock

* ci: update netlify deploy preview to build viewer project

* update PWA entrypoint to pass configuration on window to App as props

* fix: for missing key

* Pass routerBasename to our React Router component

* Simplify config for meow

Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
2020-05-15 12:57:23 +01:00
Gustavo André Lelis
b7a72f5225 OHIF-32: Wrapping React-select with our style requirements (#1529)
* Custom Select component

* Including inpot section

* Adding missing import sections on docz

* Change cursor once is disabled

* update date range color font
2020-05-15 12:38:18 +01:00
Rodrigo Antinarelli
b183e78f47 feat: ui v2 - Date Range Component (#1537)
* feat: Date Range wrapper component

* fix yarn issues

* add calendar icon

* date range css styles

* date range fixes

* fix propTypes warning

* fix clear method, defaultProps & onChange method

* update inline styles to use tailwind classes

* date range documentation page

* minor refactor
2020-05-15 12:38:05 +01:00
Danny
0ec277dd56 fix broken build 2020-05-15 12:38:02 +01:00
Rodrigo Antinarelli
2bf5486112 chore: Data Mocking for Study List (#1515)
* feat: Data mocking for studies

* feat: Data Mocking for Study List

* fix empty study position

* rename variables for numOfStudies

* fix studies query

* remove alert :|

* minor refactor

* split utils and refactoring

* refactoring -- format, clean up icons, mdx mock
2020-05-15 12:37:40 +01:00
Rodrigo Antinarelli
dd18de86f8 chore: Add new eslint rule -- props-no-spreading (#1509) 2020-05-15 12:36:01 +01:00
Gustavo André Lelis
f4aea45e01 feat: Icon component (#1499)
* New icons and old strucure of OHIF ui v1

* Export icon

* Removing wrong import and fixing some exports

* Fixing svg loader and svg images to fullCurrent

* Small fixes on docz

* Remove repeated icon

* Update other components to use Icon

* Update platform/ui/src/components/Icon/icon.mdx

Co-Authored-By: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>

* Fixing callouts

* Move icons to assets and fixing layout on iconButtons

* Fix path of icons

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
Co-authored-by: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
2020-05-15 12:35:57 +01:00
Rodrigo Antinarelli
3a63c3d20b update lock file 2020-05-15 12:33:12 +01:00
Danny Brown
d6e3b45f3c feat: nuke UI project; start new with updated tooling BREAKING_CHANGE (#1468)
BREAKING_CHANGE

* initial structure for components rewrite

* WIP Input

* WIP Label

* add button props

* add label class name

* fix dependency

* new examples buttonModules & buttonEmotion + refac

* clean up to merge initial code into base branch

* remove unused file

* extend default theme -- add new colors

* chore: prettier formatting

* chore: try to exclude feature branch PRs

* chore: suggest toml syntax highlighting extension

* chore: capture yarn.lock changes

* docs: condense readme

* chore: update deploy preview to build docz component library

* chore: Add component library to deploy preview index

* chore: fix invalid tailwindcss config

* chore: try tweaking toml to kickstart preview

* chore: revert

* chore: fix formatting of file index

* chore: don't waste precious build minutes on a broken build

* chore: chmod build-and-deploy.sh

* ci: nuke circleci until we need the workflows on master

* debug lerna commands

* remove redundant yarn commands

* try nohoist

* revert tests

* attempt to resolve import issue

* force update yarn lock

* try new workarounds for yarn version

* another workaround

* shift vtk to extension repo deps

* catch vtk addition

* update lock

* Try older yarn version

* try again

* debugging

* fix: yarn doctor warnings

* learn some life lessons from the yarn docs

* clean up netlify.toml

* clean up netlify.toml

* yarn package doctor react-dom

* yarn doctor: missing peer dep

* yarn doctor, satisfying webpack loader peer deps

* fix docz base path for deploy-preview

* yarn docter: replaced prePublishOnly usage

* More yarn doctoring

* ignore .yarn directory

* fix last yarn doctor warning

* updated yarn lock

Co-authored-by: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
2020-05-15 12:28:18 +01:00
Rodrigo Antinarelli
b53d4528fb new examples buttonModules & buttonEmotion + refac 2020-05-15 12:19:05 +01:00
Rodrigo Antinarelli
c391c007ff initial structure for components rewrite 2020-05-15 12:18:30 +01:00
James Petts
c4f84b1174
fix: 🐛 Fix seg color load (#1724) 2020-05-12 15:47:35 +01:00
Igor Octaviano
42c22df1b6
Segmentation UI for VTKjs (#1685)
* Add single viewport configuration

* Multiple viewport configuration

* Improve performance by using independent set methods

* Add jump to slice command

* Add context configuration

* Cache panel visibility

* Fix sync between vtk and cornerstone

* Remove apis index

* Add approach

* Add loading to update volumes

* Fix broken configuration

* Bump vtk version

* Use loading label

* Update cy tests after vtk loading label changed

* Remove loading for segs
2020-05-06 18:17:44 +01:00
Igor Octaviano
2a66e175df
Update viewport state after moving the stack (#1645)
* Update viewport state after moving the stack

* Only trigger new imagecallback if index bigger than 0

* Fix cornerstone viewport version

Co-authored-by: James Petts <jamesapetts@gmail.com>
2020-05-04 13:30:51 +01:00
Igor Octaviano
835f64d47a
feat: 🎸 Seg jump to slice + show/hide
* Add segment part 2 (jump to frame and visibility toggle)

* Cr updates

* Filter displaysets with images

* feat: 🎸 Seg jump to slice + show/hide

Co-authored-by: James Petts <jamesapetts@gmail.com>
2020-04-24 11:25:05 +01:00
James Petts
71205618ec
fix: 🐛 Multiframe fix (#1661) 2020-04-23 11:02:51 +01:00