Commit Graph

101 Commits

Author SHA1 Message Date
Alireza
e055f25ea6
fix(local): should use dicomlocal for localbasic (#3397)
* fix(local): should use dicomlocal for localbasic

* chore(github): styling for issues forms

* try to fix netlify

* apply review comments

* apply review comments
2023-05-17 12:45:06 -04:00
Alireza
1881ce5cbc
feat(custom displayOptions): add custom options to every level of hp (#3372)
* feat(custom displayOptions): add custom options to every level of hanging protocols

* move set preset down to cornerstone3d

* works

* fix tmtv based on new api

* fix unit test

* close

* review1

* upgrade packages

* update packages

* apply review comments

* recursive call

* less copy

* apply review comments

* fix e2e tests

* apply review comments

* revert

* apply review comments

* apply review comments

---------

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2023-05-16 13:07:37 -04:00
Bill Wallace
d5c5951e57
fix(SR): KO series being displayed in browser list (#3382)
* fix: KO series being displayed in browser list

* fix sr for volume viewports

* move highlight labelmap to RAF

* remove commented code

* fix the hydration bug for the SR

* apply review comments

* revert the key images for sr

* Remove some obsolete changes

* set initial image for sr instead of jump

* Remove viewportType stack

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-05-15 08:23:13 -04:00
Bill Wallace
a688f03fdb
feat(App): Loads mode extensions on demand (#3312)
* feat: Dynamic plugin imports

* Remove unused file

* Fix basic dev mode

* Fix the modes issue that Joe requested

* Merge fixes

* Add the ability to publish directory contents

* PR review changes

---------
2023-05-08 21:18:35 -04:00
Alireza
2f355fa158
fix(cli): better support for external modules and toolGroups in templates (#3364)
* choe(modes, components): improved readability

This commit includes changes to improve performance in the basic-dev-mode and Thumbnail components.
Additionally, a change in the webpack configuration file was made to ignore ".min.js.map" files.
The defaultDataSourceName was also added to several configuration files, and whiteLabeling code was removed
from the local_orthanc configuration file.

* fix(cli): better path management and add dependencies

* better docs

* add default tool group to the templates

* add review comments

* apply review comments

* try to fix test

* fix thumbnail in tests
2023-05-08 15:49:28 -04:00
M.D
075008c674
feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
Alireza
66863281c4
feat(RT): add dicom RT support via volume viewports (#3310)
* feat: initial RT support

* make the segmentation service work with representation data

* feat: make segmentation service work with representations

* fix rtss vis

* fix: rt hydration

* fix the rendering of rt names

* fix imports

* refactor: Modify status and click handling for hydration of RTStructures

Modify status and click handling for hydration of RTStructures by renaming `onPillClick` to `onStatusClick` in `OHIFCornerstoneRTViewport.tsx` and `_getStatusComponent.tsx` files. Also, update initial segmentation configurations in `PanelSegmentation.tsx` and simplify configuration changes and values for segmentation service in `SegmentationService.ts`. Finally, remove console debug in `CornerstoneViewportService.ts`.

* wip for highlighting contours

* refactor rt displayset code

* review code update

* update cornerstone dependencies

* refactor: Update license year, version number, and minor code cleanup

This commit updates the license year in several files, updates the version number in package.json, and contains minor code cleanup in two files.

* add bulkdataURI retrieve for RT

* fix package version

* apply review comments

* apply review comments

* apply review comments

* feat(panels): refactor and streamline segmentation configuration and inputs

Rewrote state hooks and streamlined the configuration input for `PanelSegmentation` to be more verbose and reusable. Included several new input types, including the `InputRange` component which now shows a fixed floating value based on the step provided. The `SegmentationConfig` component now works with dynamic values controlled by `initialConfig`. These changes should improve function usability and make the code more maintainable going forward.

* fix various bugs

* fix contour delete by upgrade cs3d version

* feat(viewport, inputNumber, segmentationConfig, orthanc): Implement minimum and maximum values for input number components, and useBulkDataURI for Orthanc configuration. Compare measurement view planes with absolute viewport view planes in Cornerstone viewport.

* update yarn lock
2023-04-26 12:21:08 -04:00
Bill Wallace
c508a2b6bc
feat: Add a new hanging protocol @ohif/mn (#3305)
* feat: Add a new hanging protocol @ohif/mn

* Add @ohif/seg example

* PR comments and a couple more fixes to make things cleaner

* PR comment

* Added an example to cause the PR checks to rerun
2023-04-18 11:55:25 -04:00
M.D
47c25f4364
feat(measurements): add CircleROI Tool (#3211)
* [refactor] measurement service mapping files - rename to .ts files

* [fix] RectangleROI - measurement service mapping _getReport() function - tool name fix

* [feat] added CircleROI tool from updated cornerstone3D

* [refactor] fix for typescript strong typing warnings

* [feat] cornerstone-dicom-sr extension - added CircleROI tool

* [feat] added toolbar button for CircleROI tool

* [doc] doc updates for CircleROI tool

* [update] library - dcmjs to 0.29.5

* [fix] roundNumber() function when given strings

* [fix] refactor after upgrading conerstonejs library 0.49.0

* yarn.lock file change
2023-04-17 08:23:03 -04:00
Bill Wallace
50ed96ff73
feat(URL): add param for initial series and sop uids to display (#3265)
* feat: Allow navigating to a specified series and sop instance

This was a feature in OHIF v2, so adding it to v3, albeit with new
parameters.

feat: Allow comma separated as well as repeated args params

* docs

* Test fixes

* feat: Navigate to SOP selected - PR fixes

* Updated docs

* PR fixes
2023-04-05 12:59:56 -04:00
Bill Wallace
2f33e42004
fix: Store hotkeys to specified name (#3280)
* fix: Store hotkeys to specified name

* fix: Move hotkey name into a new hotkey object
2023-03-28 12:15:55 -04:00
Joe Boccanfuso
d3200a6383
fix(Volume3DViewport): Added pan and zoom (#3283) 2023-03-27 12:17:38 -04:00
Bill Wallace
bc642fd2b6
feat: Allow configurable context menus (#2894)
* feat: Context menu

feat: Custom context menu

Adding documentation

PR updates

* fix: Capture tool exception

* PR updates

* Add fully worked out examples in the basic test mode/extension

* Fix the menu display

* fix: Make the commands on clicks much more configurable

* Wait for load before double clicking

* docs

* PR changes - nothing functional, just moving things endlessly

* PR comments

* PR changes - rename the default context menu

* Renamed the cornerstoneContextMenu to measurementsContextMenu

* Add chevron right to the sub-menus
2023-03-22 17:45:28 -04:00
Joe Boccanfuso
550918dd31
feat(VolumeViewport3D): add volumeViewport3Dd sample hp (#3241)
* feat(VolumeViewport3D)
- importing and using Cornerstone 3D's VolumeViewport3D viewport
- added mprAnd3DVolumeViewport hanging protocol
- allowed for W/L preset to be applied to a viewport

* Updated cornerstone core dependency

* Removed pan and zoom from the volume3d tool group so that tackballrotate is never dropped for that viewport.
Removed overlays from 3D volume viewport.
Throw an error and display a message whenever an unapplicable tool is selected.

* The default/initial orientation for a 3D volume viewport can now be set.
Using the 'interleaveTopToBottom' image load strategy for the 'mprAnd3DVolumeViewport' hanging protocol.

* Do not set orientation for stack viewport.
2023-03-21 16:09:50 -04:00
Bill Wallace
803f638401
feat: state sync service and hanging protocol updates to preserve state (#3131)
* feat: Add state sync and use it to remember viewport grid info

fix: Version updates

Fixes for toggling MPR mode

Fix the display when the interleaved load module fails

Fix the memory of the state to restore correctly

PR fixes for the state sync service

PR fixes

PR fixes

PR fixes

Added a hack warning to remove volumeDeactivate

Fixes for TMTV colormap setting

Fix the casing

Missed renames

fix: tests not running due to variance in ordering

Reverting some fixes to change case

PR changes - mostly comments and minor improvements

fix: All display sets were being updated on drag and drop

PR fixes - mostly renames

PR fixes

Test support for OHIF, for HP branch

test: Add at least a minimal set of automated tests for hanging protocols

Docs

PR fixes

Merge fixes

DOCS updates

Add an example of the mn hanging protocol

PR fixes

PR fixes

PR fixes

* Fix the drag and drop

PR fixes

* PR changes - update default keys for next/previous stage

* fix: Was storing the custom viewport grid too aggressively

Caused by a PR change misspelling a variable
2023-03-15 12:41:41 -04:00
Joe Boccanfuso
5670a4d8d1
feat(PanelService): Left or right side panel to auto start as closed but auto open when needed (#3212)
* feat(SidePanel)
OHIF issue #3135
- Added a method to set a callback for a Panel to invoke when it is ready
to be shown (e.g. its data is loaded).
- Implemented such methods for both the segmentation and measurement panels.
- The SidePanel component now adds a callback to Panel components so that
it will automatically open a Panel that was initially closed and yet to
be opened.
- Updated the OHIF documentation accordingly.

* PR feedback
- added a PanelService that centralized much of the logic that existed in panel PanelModule
- the SidePanel subscribes to PanelService.EVENTS.ACTIVATE_PANEL for each of its child panels

* Removed the PanelMeasurementTableTracking setMeasurementPanelContentReadyCallback method.

* Made the forceActive flag in the PanelService optional and defaulted it to false.

* Fixed failing top level exports unit test.

* - PanelService subscriptions are now per panel (id) so subscribers do not
necessarily need to check the panel id in the event when it is fired
- PanelService activate panel trigger subscriptions are now returned
so that they can be (better) managed outside of the service
- updated/created the various documentation for panels and PanelService

* Clarified various documentation.
Moved the code to add the activate panel triggers out of the extensions
and into the longitudinal mode.

* Removed the openWhenPanelActivated flag.
PanelService now conforms to extending PubSubService like the other services.
Updated various documentation.

* Fixed failing e2e, mpr test.

* Renamed the ActivatePanelTriggers type properties.
The ExtensionManager now sets the id of various modules as a property on each of those modules.
2023-03-09 22:30:09 -05:00
md-prog
b15988359f
feat(Calibration Tool): add a calibration tool that can manually recalibrate an image and measurements on it (#3136)
* minor bug fix - reading modalities

* react error log fix - button props

* react warn fix - Typography color prop

* calibration tool without persistence

* added toolbar button for calibration tool

* icon change for calibration tool

* important bug fix for calibration - length and calibration rate calculation

* fix weird autocorrection

* [fix] bugs after merging upstream

* [refactor] conform to the new service names
2023-02-22 21:01:36 -05:00
Bill Wallace
67fc3f733d
feat(SR): Measurement adapter mappings and save to same series (#3140)
* feat: Add adapter mappings for RectangleROI and Angle and save same

PR comments

* fix: Rehydrate check on non core measurement adapters
2023-02-17 16:44:21 -05:00
Alireza
926290f69e
feat: add more e2e tests for MPR and add test mode and extension (#3180)
* tests: add various e2e tests for MPR and measurements

wip

add cypress config

feat: add mode and extension for testing

add hp applied through search params

add MPR tests

apply review comments

add more e2e tests

update yarn lock

* fix unit tests failing
2023-02-17 15:04:07 -05:00
Bill Wallace
8af0362d12
fix(typescript): rename services to fix typescript (#3165)
* fix: Rename services to lower camel case, hp, measure

* fix: Rename DisplaySetService instances to displaySetService

* fix: Rename CornerstoneViewportService to lower camel case

* fix: Added lower case segmentationService rename

* rename other services (#3166)

* rename uiDialogService

* rename toolGroupService

* rename uiNotificationService

* rename viewportGridService

* rename syncGroupService

* rename CornerstoneCacheService

* Fix a syntax error in hotkeys

* Fix a couple of rename issues that were missed

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-02-10 16:46:09 -05:00
Bill Wallace
7f799b8e3d
fix: Create typed services and allow lower case access to agree with naming conventions (#3141)
* fix: Add typed services

* fix: Typed services - PR changes

* remaining of the cineService and toolbarService renaming

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-02-07 14:31:55 -05:00
Alireza
123e3a569b
fix(Segmentation): bump packages to fix segmentation rendering (#3138)
* add test mode

* bump packages

* add reference lines

* update yarn lock

* fix netlify build

* fix num workers

* update year in doc
2023-02-03 09:33:28 -05:00
Joe Boccanfuso
9b0d542526
fix: rework inconsistencies in split button implementation(#3086)
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
The primary button will always be the layout grid selector and the MPR toggle is in the drop down menu.
This is the first step to later adding other (e.g. 3D) layout HPs to the menu.

Summary of changes/fixes:
- SplitButton now allows for its primary button to be any button component specified by a UI type.
- SplitButton passes a className to its primary button component to dictate how it should be rendered
based on its active/toggle status, hovering, menu visibility etc.
- The default menu item renderer for the SplitButton, renders acitve toggle items correctly.
- Items/buttons in the toolbar are now all the correct and same size.
- Added ToolbarService.getButtonComponentForUIType to fetch a button component for a given UI type.
- Spacing between toolbar items is now done at the Toolbar level to avoid double spacing and to ensure
uniform spacing.
- The drop down menu closes when clicking the primary button.
- Show a mouse down click effect when clicking the primary button.

Items to investigate still:
The following are all slightly contrary to the design specs of the UI:
- Is the click effect on the primary button satisfactory because with the hover border effect, the
button appears slightly smaller during the mouse down/up operation? (MEDIUM)
- On hover over the drop down button, the right-hand-side corners of the primary button appear
rounded and NOT square. Also the hover over the drop down button border effects make the primary
button appear smaller. (MEDIUM)
- Should there be hover effects when hovering over either tooltip of the SplitButton? (LOW)

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Fixed broken e2e tests.
data-cy and data-tool properties now passed down to primary button component.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

On drop down button hover, the primary button now stretches all the way right with no right border
and with square corners in the top and bottom right as per the toolbar spec.

The mouse down effect gives a full button look (i.e. no borders) with rounded corners all around and black text icon.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Documented that the primary button of a split button can specify a UI type.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Feedback from PR review to fix prettier formatting issue.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Added TODOs as per Bill's request in the PR.

* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.

Feedback from Alireza: reverted the layout selector and MPR tools to be separate toolbar items.

Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-01-06 15:00:23 -05:00
Bill Wallace
beb4517450
fix(grid):Grid service wasn't being reset (#3068)
* fix(grid):Grid service wasn't being reset

* fix(service):Fix the initial service state

Services with mode specific state differed in internal state between
initial and subsequent load.  This fix address that structurally by
allows the mode to store/manage service state, but makes the
responsibility of service state central to the service.
2022-12-09 10:58:01 -05:00
Alireza
42dca11ae3
fix: various bugs with v33 re cine and colors (#3052)
* fix various bugs

* feat: initial work for debug page

* change throw to console error for color lookup table

* update packages

* apply review

* apply review comments
2022-12-05 09:53:59 -05:00
Bill Wallace
daa56a8449
feat(CustomizationService):Add a customization service (#2984)
* feat(customization):Add a customization service

Update UICustomizationService to v3-stable.

Also, adds an example customization for tab colors

* moved the customization service to ui category
2022-11-24 16:28:10 -05:00
Alireza
87eab39768
fix: remaining bugs for MPR and toolbar icon colors (#3026)
* feat: warn for overlapping segments

* fix: typo

* refactor mpr toggle and stack sync

* fix: wip for more general mpr

* fix: tool groups for mpr

* fix: changing of viewport id

* fix: viewport Id for the seg viewports

* fix

* update cornerstone version
2022-11-21 10:44:19 -05:00
Alireza
6db4d7a917
fix: ui for dicom tag browswer (#3022)
* fix: ui for dicom tag browswer

* fix build
2022-11-16 22:35:23 -05:00
Michael Andersen
ccf010c0fe
feat: DicomTagBrowser tool (#2975)
* init bring v2 tag browser to v3, some small bug fixes

* moved tag browser to default extension, altered style to be more OHIF-v3-like

Co-authored-by: Michael Andersen <Michael.Andersen@rmp.uhn.ca>
2022-11-16 22:16:12 -05:00
Alireza
83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
Bill Wallace
e401358887
fix(hp): Make the updated hanging protocol compatible with modes (#2971)
There had been a change made to make the hanging protocols
auto initialize, but that caused problems on mode init
because the couldn't specify the hanging protocols any longer.
THis change restores that, and also improves the API a little
bit by allowing the display set selectors to be specified by id
instead of positionally.

fix(hp):PR Review Comments

fix(hp):Unit test and docs
2022-10-05 08:32:54 -04:00
Alireza
9df557831b
fix: mpr button is not ready to be displayed yet (#2951) 2022-09-22 11:55:51 -04:00
Alireza
5f480ff746
feat: explicit layout apply via HangingProtocolService (#2936)
* feat: add more types to HP service

* change hp to have apply protocol

* feat: mpr initial work

* apply protocol by id

* feat: mode should be able to apply protocol directly

* fix: wrong inheritance for viewports drag and drop

* apply review comments
2022-09-20 23:40:26 -04:00
Ouwen Huang
fb9744a817
feat: added rows column props to LayoutSelector (#2945) 2022-09-20 17:43:23 -04:00
Bill Wallace
0090605cf7
fix: various type issues and error handlings (#2831)
* fix(error):Fix a few error conditions, mostly around seriesNumber

* apply few fixes
2022-09-08 22:09:28 -04:00
Bill Wallace
e1d366e1e1
feat: make hanging protocol work on displaySets instead of series (#2837)
* feat(HP): Apply HP to display sets, fix race condition

* fix: displaySetService no event not needed (#2912)

* fix various styles and renamings

* feat: refactored hp service

* fix: use HP service event for viewport grid

* remove unnecessary doc

* fix test

* apply review comment

* fix: segmentation creation

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2022-09-07 11:59:11 -04:00
Alireza
2639d90e5e
fix: hanging protocol for the tmtv (#2882) 2022-08-19 19:35:29 -04:00
Salim Kanoun
df6ddf1572
fix: bone and brain preset in tmtv (#2877) 2022-08-19 18:43:04 -04:00
Alireza
10b4ed5f8c
feat: new Total Metabolic Tumor Volume tmtv (#2866)
* fix: ptDisplaySet metadata problem

* fix: typo in xhrHeader field

* fix: temporary fix for crosshairs on reload data

* fix hotkey bug for input fields

* upgrade docusarusu to stable release

* circle ci node upgrade

* cypress node upgrade

* bump node in netlify

* bump node version

* remove versioned docs

* update resources

* fix: webpack injection of plugins

* fix meaningful label for panels

* add reviews and fix cli for creation

* copy over chunks if exists in the build

* edit templates

* edit templates

* fix yarn lock

* fix(plugin):Deploy on windows is broken

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-08-17 15:13:59 -04:00
Erik Ziegler
bd1c38c00c
feat: cornerstone3D stack and volume viewports (#2787)
* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: cs3d tools and toolGroups (#20)

* add more tools to work with cs3d mode

* fix hotkeys

* add stack manager usage for stach viewports

* add image scrollbar

* wip viewport overlay

* fix toAnnotation schema for tools

* fix the unnecessary size change that triggered resize

* hanging protocol improvement to allow unmatched errors

* study description matching for hanging protocol

* fix the displaysetOptions to work

* fix handle the active tool when a new viewport is added

* fix separate toolGroups for mode

* apply review comments

* apply review comments

* yarn lock

* feat: overlay component (#21)

* fix default displayset options

* add viewport overlay

* apply review comments

* feat: loading and orientation indicators (#22)

* add loading indicator

* add orientation marker initial work

* apply review comments

* fix: orientation markers (#23)

* finished the orientation markers

* fix various broken cypress tests

* apply review comments

* update yarn lock

* feat: re-working measurement tracking mode with cornerstone3d (#2805)

* feat: cs3d working stack viewport and tools (#19)

* Squashed everything

* fix weird react issue

* fix eslint / prettier stuff

* thumbnails work now with cpu rendering

* feat: use new loadImageToCanvas in cs3d

* make jump to measurement work

* fix active thumbnail

* fix measurement delete

* fix window level presets

* remove segmentation and sync groups for now

* fix the dicom pdf and dicom video

* fix cornerstone window assignment for cypress

* apply review comments

Co-authored-by: Erik <erik.sweed@gmail.com>

* feat: Add Measurement tracking mode with cs3D (#2789)

* feat: first render for cornerstone3d tracked viewport

* make tool active work

* wip for SR extension

* renamed dicom sr to cornerstone dicom sr

* remove cornerstone from dicom pdf and video

* move dicom sr logic to sr extension

* feat: Add hydration for the length tool

* fix SR display tool for length using cs3d

* fix default config

* fix: various bugs with sr viewport and tracking

* fix promptying to continue tracking for when SR is created

* feat: add keep trackign of unique identifiers

* fix hydration for same imageIds

* feat: Add SR toolGroup creation on modeEnter

* feat: remove the need for separate mapper for SR hydration

* add SR display for ellipse

* handle hydration of elliptical ROI tool

* remove cornerstone extension

* add arrow mapping

* feat: Add ArrowAnnotate SR display and hydration

* apply review comments

* apply review comments

* move viewport labels to the viewportData

* apply review comments

* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)

* fix: integration cypress tests with cornerstone3D

* revert to addOrUpdate as it makes more sense

* fix local drag and drop

* fix tests

* move dicomLoaderService to cornerstone extension

* fix various import bugs

* fix bug for local PT series

* fix various unit tests

* bump cs3d versions

* add angle and magnify tool

* bump dependencies to avoid broken peerDeps

* feat: add initial work for capture using cs3d

* feat: show annotations on the image capture

* feat: add svg layer export

* feat: Add CINE Tool

* feat: remove unnecessary viewport rendering for cine state changes

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>

* docs: modify and improve documentation (#2800)

* cleanup docs versionings

* feat: Add all version explanations

* version docs for 3.0

* wip for changing docs

* wip for updated docs

* add utility module documentation

* fix demo with nohoisting of history

* add slides and video to resources

* apply review comments

* fix: drag and drop SR into SR viewport (#2803)

* update yarn lock

Co-authored-by: Erik <erik.sweed@gmail.com>

* update pathnames to match v3-stable

* update the e2e pathname

* fix: various bugs with regard to tracking workflow (#2811)

* fix: various issues with measurement panel

* fix: update default tool style for annotations

* fix: annotatoin label getting removed

* feat: Add backward compatibility for SR hydration with legacy cornerstone

* fix: cursors and ellipse ROI max style

* fix: ArrowAnnotate SRDisplay

* apply review comments

* bump package versions

* fix: bugin rehydration of SR

* fix: e2e tests

* fix active viewport thickness and arrowTool ui

* add readme for measurement tracking

* use uploaded image for readme

* add back images

* try to fix e2e test

* fix: window level presets hotkeys

* Update README.md

* update yarn lock

* feat: volume api and TMTV mode (#2817)

* feat: volumeAPI and TMTV mode

* feat: use cs3d cache service to obtain viewportData

* wip for volume api

* wip: fusion viewport

* feat: add blend mode option

* wip for image scrollbar

* fix drag and drop thumbnail

* wip for image scrollbar for voluems

* fix: element mismatch bug for scroll

* feat: Add image scrollbar to volumes

* feat: add syncGroups to volume api

* feat: add tmtv mode initial setup

* feat: add initial image options for the stack viewports

* feat: Add custom load strategy for volume viewports via HP

* apply review comments

fix: Jump presets cs3d (#2812)

* feat: Add JumpPreset to OHIF for Cornerstone3D

* fix: accessing viewport service from servicesManager

feat: volume API and TMTV mode (#2814)

* fix: do not display overlays on mip viewports

* feat: add optional disableCommands for toggle buttons

* fix: toggleCrossharis

* feat: config the crosshairs

* feat: add PetSUV Panel for changing metadata

* feat: initial work for the rectangleROIThreshold panel

* wip: measurement service

* roi threshold working

* feat: Add displayText to segmentations

* feat: add remove segmentation

* feat: add csv export

* feat: add RT export for annotations in tmtv mode

* fix: fusion to use pt in tmtv mode and measuremet mappings

* fix: various bugs

* apply review comments

* apply review comments

* feat: add fusion color maps

* add readme to tmtv mode

* Update README.md

* fix: try to fix build

* fix unit tests

* Update README.md

* feat: add about to the panel

* fix: changing strategy in roi panel

* apply review comments

* update package versions

* wip for stackPrefetch

* fix: cornerstone3d hydration and renaming (#2818)

* update readme

* renamed cornerstone extension

* wip for renaming cornerstone3D variables

* wip for renaming cornerstone3D variables

* wip for fixing bugs for SR viewport

* fix: jumpToMeasurement and initial label after hydration

* fix: fileName capitalization

* feat: use the new prefetch stack in the cs3d (#2820)

* feat: use the new prefetch stack in the cs3d

* use viewport scroll api for stack viewport

* fix cine stop when scrollbar changes

* feat: use new prefetch events

* fix loading state to not show repeatedly

* fix: various bugs for tmtv mode thresholding and new icons (#2823)

* feat: make tmtv mode available in worklist

* feat: add new icons for tmtv mode

* feat: add fusion color icon

* fix: parallel scale calculation

* fix: bump Cornerstone to get large image support working

* fix: Fix issues with CPU viewport flipping, including config files

* fix: bump cornerstone to fix magnify tool

* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport

* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys

* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors

* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)

Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.

* bump: dependency versions to fix hydration bugs (#2848)

* bump: dcmjs version to fix hydration bugs

* try to fix tests

* bump dependency versions

Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 12:39:04 -04:00
Celian-abd
cfcf5e48e7
fix: window level presets (#2808) 2022-07-21 18:23:07 -04:00
Alireza
7f0ad6f84d
feat(cli): Ohif cli for modes and extensions modification (#2696)
* feat: Add initial cli tool structure

* feat: add copying template files

* feat: Add mode template and command

* feat: Add readme template generation

* feat: Add documentation to extension template

* feat: Enhance documentation of the template mode

* fix: cli module type

* feat: Add config-based mode and extension registration (#2660)

* feat: Add ohif cli add/remove extension/mode (#2661)

* Basic working CLI for add-extension and remove-extension

* Basic cli for add/remove extension/mode, lots more to do.

* Cleanup and harden]

* feat: Add list of tasks to add-mode

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* feat: Add git initialization for the mode or extension template (#2662)

* fix: package json file to include templates

* feat: Add git initialization for the mode or extension template

* feat: Add more checks of git and target dir

* feat: refactore library utilities

* feat: Add the list command to print extensions and modes (#2664)

* feat: Add the list command to print extensions and modes

* Add todo

* Feat/ohif cli validation + auto install (#2671)

* WIP

* Working mode keyword verification

* Validation

* auto install extensions based on modes

* WIP remove unused extensions on removeMove

* Working add-mode, remove-mode automatic extension management.

* If extension is in used by a mode, don't allow the CLI to uninstall it

* Cleanup addExtension

* cleanup removeExtension and addMode

* Cleanup removeMode

* Update existing extensions with the needed keywords/peer deps

* Fix broken config

* Feat/cli search (#2677)

* feat: refactor pretty print for console

* feat: add search for modes and extensions

* fix: ugly colors

* Feat/ohif cli error handling publishing (#2679)

* WIP

* fix: webpack imports

* wip

* fix: react router dom private routes

* from last commit

* wip

* fix: webpack prod builds

* WIP

* Working regsitration with new IDs

* Stable

Co-authored-by: Alireza <ar.sedghi@gmail.com>

* verify extensions when constructing modes. (#2681)

* verify extensions when constructing modes.

* Add version to unit tests so it conforms to schema

* Update ohif utils exposed via @ohif/core

* Fix import

* fix tests

* feat: ohif-cli link local modes/extensions for development (#2682)

* feat: enable cli to work with project root

* feat: add initial link package

* feat: add link and unlink extension

* feat: add link and unlink mode

* erro handling for link-package

* feat: add comment on ohif-cli linking for development (#2686)

* Docs/ohif cli (#2687)

* feat: Add documentation for templates

* feat: Add more documentation

* Fix/core publish (#2685)

* versions

* wip

* remove webpack clean output

* fix publish

* use next as dist tag for v3 for now

* fix webpack pro recipe for output

* fix: lerna publish next

* fix(cli): fix issues when trying to link an extension or a mode (#2725)

The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.

* make dicom pdf and video work after cli merge

* add axios dependency

* comment out the chdir for now

* create id and version based on user inputs

* customizable path for extension and modes

* fix template to make the template mode load

* fix the questions to loop if path is not desirable

* fix templates

* correct package json order

* unify the package creation for extension and mode

* bump versions for each package

* bump extension versions to 3.0

* add gitignore to templates

* fix version requirements when ^

* update docs

* update docs and fix tests

* try to fix the tests

* bump node version

* remove the version from extensions

* remove the version from modes

* remove version from extensionManager

* fix eslint

* revert husky version

* fix eslint

* fix node version for new eslint

* fix documentatoin removing version

* fix cicle ci image version

* fix circle ci node image

* fix circle ci node image

* add back the video and pdf

Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
2022-04-06 13:28:42 -04:00
Bill Wallace
82df3eac03
feat(PDF):Add PDF viewer (#2730)
Display DICOM encapsulated PDF documents in a PDF viewer.
Addressed the remaining PR comments, and am merging this.
2022-04-04 09:48:14 -04:00
Bill Wallace
ca9ed62a5f
feat(OHIF):Add DICOM Video Display
* feat(OHIFv3):Add a video viewport

* Fixed a couple of viewing issues

* fix(OHIF):If not all instances are used by a given provider, then continue to add items

* Added video data

* Add a basic e2e test for video display

* Adding a screen shot as requested
2022-02-24 11:55:12 -05:00
Alireza
5c8ee7f906
feat: OHIF-v3 UI Component Library (#2653)
* wip on storybook as a replacement for using UI components in docusaurus, since it causes too many problems

* fix: storybook webpack config

* feat: add more stories

* feat: add more stories

* feat: add more stories

* feat: fix logo and babel runtime error

* feat: move to mdx docs for ui

* feat: enhanced mdx for header and styles

* feat: Add button usecases

* feat: Add buttonGroup docs

* feat: Add docs and use case to cine and contex menu

* feat: fix decorators

* feat: add header and dropdown docs

* feat: add Icon and input docs

* feat: add more docs

* feat: add more stories

* fix: feedback section

* feat: Add doc page

* feat: Add typography and color stories

* yarn lock

* add analytics to v3-ui

* new banner image

* new viewport component

* update review comments
2022-02-10 14:08:34 -05:00
Erik Ziegler
3c9f3cb273
feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2538)
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF

* fix: Set empty public path

* perf: Add webpackPrefetch tags to lazy loaded components

* Switch to using webpack alias to use dynamic import version of WADO Image Loader

* fix lockfile

* prevent polyfilling zlib

* bump to wado image loader 4.0.3 with fix for public path
2021-09-24 09:06:52 +02:00
Alireza
46c2dc285c
feat: Add mode validity for the base viewer (#2525)
* feat: Add mode validity for the base viewer

* feat: Edit documentation and remove unnecessary files

* feat: Add probe tool documentation

* docs: Improved screenshots annotations

* Added new screenshot for measurements
2021-08-30 09:36:05 -04:00
Erik Ziegler
ff28a2264b fixes for hotkeys usage in docusaurus 2021-07-21 12:58:15 +02:00
Erik Ziegler
7a9f113b91
Merge branch 'feat/v2-main' into feat/v2-main-docusaurus-netlify-monorepo 2021-07-20 15:55:21 +02:00
Alireza
042dbb13b4
Fix: Google cloud config and tooltips (#2471)
* fix: google cloud config and tooltips

* fix: version number

* fix: cine player commandOptions
2021-07-16 13:32:51 -04:00