ohif-viewer/platform/viewer
Alireza 83ea228d86
feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
..
.recipes feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
.webpack feat: new Total Metabolic Tumor Volume tmtv (#2866) 2022-08-17 15:13:59 -04:00
assets Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
cypress feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
public feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
src feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
.all-contributorsrc Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
.browserslistrc fix: measurementsAPI issue caused by production build (#842) 2019-09-04 13:53:13 -04:00
.dockerignore Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
.env feat: New @ohif/viewer project structure + routes (#1674) 2020-05-15 12:57:23 +01:00
.env.example feat: New @ohif/viewer project structure + routes (#1674) 2020-05-15 12:57:23 +01:00
.eslintignore Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
babel.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
CHANGELOG.md chore(release): publish [skip ci] 2020-05-14 14:24:17 +00:00
cypress.json chore: Clean up unused files, imports, and work on getting end-to-end tests and unit tests running (#2272) 2021-03-01 16:52:54 +01:00
jest.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
jestBabelTransform.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
LICENSE Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
netlify.toml feat: new Total Metabolic Tumor Volume tmtv (#2866) 2022-08-17 15:13:59 -04:00
package.json feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
pluginConfig.json feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
postcss.config.js Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
preinstall.js feat: cornerstone3D stack and volume viewports (#2787) 2022-07-27 12:39:04 -04:00
README.md Docs reorganization 2021-07-15 09:54:01 +02:00
tailwind.config.js feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015) 2022-11-16 14:19:52 -05:00
tailwind.css fix(tailwind): Ensure tailwind properly purges unused utility classes (#2485) 2021-07-26 13:22:25 +02:00

@ohif/viewer

@ohif/viewer is a zero-footprint medical image viewer provided by the Open Health Imaging Foundation (OHIF). It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support DICOMweb.


NPM version NPM downloads Pulls All Contributors MIT License

ATTENTION: If you are looking for Version 1 (the Meteor Version) of this repository, it lives on the v1.x branch

Why?

Building a web based medical imaging viewer from scratch is time intensive, hard to get right, and expensive. Instead of re-inventing the wheel, you can use the OHIF Viewer as a rock solid platform to build on top of. The Viewer is a React Progressive Web Application that can be embedded in existing applications via it's packaged source (ohif-viewer) or hosted stand-alone. The Viewer exposes configuration and extensions to support workflow customization and advanced functionality at common integration points.

If you're interested in using the OHIF Viewer, but you're not sure it supports your use case check out our docs. Still not sure, or you would like to propose new features? Don't hesitate to create an issue or open a pull request.

Getting Started

This readme is specific to testing and developing locally. If you're more interested in production deployment strategies, you can check out our documentation on publishing.

Want to play around before you dig in? Check out our LIVE Demo

Setup

Requirements:

Steps:

  1. Fork this repository
  2. Clone your forked repository (your origin)
  • git clone git@github.com:YOUR_GITHUB_USERNAME/Viewers.git
  1. Add OHIF/Viewers as a remote repository (the upstream)
  • git remote add upstream git@github.com:OHIF/Viewers.git

Developing Locally

In your cloned repository's root folder, run:

// Restore dependencies
yarn install

// Stands up local server to host Viewer.
// Viewer connects to our public cloud PACS by default
yarn start

For more advanced local development scenarios, like using your own locally hosted PACS and test data, check out our Essential: Getting Started guide.

E2E Tests

Using Cypress to create End-to-End tests and check whether the application flow is performing correctly, ensuring that the integrated components are working as expected.

Why Cypress?

Cypress is a next generation front end testing tool built for the modern web. With Cypress is easy to set up, write, run and debug tests

It allow us to write different types of tests:

  • End-to-End tests
  • Integration tests
  • Unit tets

All tests must be in ./cypress/integration folder.

Commands to run the tests:

// Open Cypress Dashboard that provides insight into what happened when your tests ran
yarn run cy

// Run all tests using Electron browser headless
yarn run cy:run

// Run all tests in CI mode
yarn run cy:run:ci

Contributing

Large portions of the Viewer's functionality are maintained in other repositories. To get a better understanding of the Viewer's architecture and "where things live", read our docs on the Viewer's architecture

It is notoriously difficult to setup multiple dependent repositories for end-to-end testing and development. That's why we recommend writing and running unit tests when adding and modifying features. This allows us to program in isolation without a complex setup, and has the added benefit of producing well-tested business logic.

  1. Clone this repository
  2. Navigate to the project directory, and yarn install
  3. To begin making changes, yarn run dev
  4. To commit changes, run yarn run cm

When creating tests, place the test file "next to" the file you're testing. For example:

// File
index.js;

// Test for file
index.test.js;

As you add and modify code, jest will watch for uncommitted changes and run your tests, reporting the results to your terminal. Make a pull request with your changes to master, and a core team member will review your work. If you have any questions, please don't hesitate to reach out via a GitHub issue.

Contributors

Thanks goes to these wonderful people (emoji key):

Erik Ziegler
Erik Ziegler

💻 🚇
Evren Ozkan
Evren Ozkan

💻
Gustavo André Lelis
Gustavo André Lelis

💻
Danny Brown
Danny Brown

💻 🚇
allcontributors[bot]
allcontributors[bot]

📖
Esref Durna
Esref Durna

💬
diego0020
diego0020

💻
David Wire
David Wire

💻
João Felipe de Medeiros Moreira
João Felipe de Medeiros Moreira

⚠️

This project follows the all-contributors specification. Contributions of any kind welcome!

License

MIT © OHIF