ohif-viewer/platform/core/README.md
Danny Brown 08ff214ea6
Chore/kill yalc with fire (#629)
* init

* more shifting

* Move @babel dependencies up to workspace root

* Begin updating dependent libraries to use sync'd webpack builds w/ watches

* Commit changes before a long weekend

* Split packages into platform and extensions

* Consolidate how/where we specify file/module type entrypoints

* Make it possible to pass in extensions as App props

* Resolve viewer's modules

* Target for UMD bundle

* Add Webpack Stylus loader

* Provide WebPack build options for microscopy, vtk, and ui

* Better entrypoint for extensions

* Push changes up to switch PCs

* Fix ESM symlink build for Viewers

* Shift docs to root

* Specify additional lerna config props

* Begin providing basic readme info

* Rename example extension folder

* Shift links to bottom of doc

* First attempt at a netlify deploy preview

* Attempt to fix deploy preview build

* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands

* Try to use global gitbook-cli

* Export node_modules path

* More agressive with modifying PATH

* Follow deploy log output advice

* try again to set bin path

* Try swapping bash with a new shell

* Try bash -l instead of exec bash

* Annd let's try again

* and again

* We may have figured it out johnny, boy

* We need to pull cornerstone-wado-image-loader files from hoisted node_modules

* Attempt to fix ticks/escapes

* Change copy syntax; try running tests on viewers from root for circleci

* Lower version to match circleci image

* Try alternative jest-canvas-mock location and version file syntax

* Run version command instead of calling node directly

* Try alternative jest transform

* Set path and enable workspaces

* Add codecov flags

* Use cpx so our copying finishes?

* Get all platform unit tests to run

* Run and report individually and in parallel

* Try once relying on codecov yaml to split w/ flags

* Add projects to split by flags

* Generate separate reports

* Trigger codecov after everything has finished running; these may not support flags

* Use recommended flags from issue comments for codecov

* Fix typo

* Remove clear flag

* Shift back to calling codecov from root

* Generate example for codecov issue

* Try fixing paths

* Simplify

* Try using codecov orb

* Bump circleci version

* Upload core and viewer

* Use full string paths

* Remove individual codecov calls

* Fix dir

* Combine files before upload

* Escape anchors

* tryfix syntax

* Escape string literal

* Combine lines to reduce path

* long paths

* Use home alias

* Fix filename

* Try to see the contents of our cat'd file

* Also upload `core`

* Try running with aliased folder

* Fix path; split PR and Merge unit tests into separate jobs

* Set default threshold

* Fix typo

* Changing to scoped package names

* Adding note

* Catch more updates

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.0
 - @ohif/extension-dicom-html@0.0.4-alpha.0
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.0
 - @ohif/extension-dicom-pdf@0.0.8-alpha.0
 - @ohif/extension-vtk@0.1.4-alpha.0
 - @ohif/core@0.11.1-alpha.0
 - @ohif/i18n@0.2.3-alpha.0
 - @ohif/ui@0.2.18-alpha.0
 - @ohif/viewer@0.0.22-alpha.0

* Clean up primary readme

* Support for dev and dev:* commands

* Shift build command; satisfy default PWA build

* Remove old scripts

* Clean up UI to set webpack scripts

* Tidy up project links

* Clean duplicate code in UI project

* Update UI project's docs

* Clean up ui and i18n config

* Reduce duplicate code in `@ohif/core`

* Fix @ohif/ui versions

* bump @ohif/core versions

* Redux testkit dep

* Remove unused/duplicate config files for projects/packages

* ohif-core --> @ohif/core

* Safer publish command

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.1
 - @ohif/extension-dicom-html@0.0.4-alpha.1
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.1
 - @ohif/extension-dicom-pdf@0.0.8-alpha.1
 - @ohif/extension-vtk@0.1.4-alpha.1
 - @ohif/core@0.11.1-alpha.1
 - @ohif/i18n@0.2.3-alpha.1
 - @ohif/ui@0.2.18-alpha.1
 - @ohif/viewer@0.0.22-alpha.1

* test version bump

* Add global prettier config

* chore(release): publish %s [skip ci]

 - @ohif/viewer@0.0.22-alpha.2

* test lerna publish

* Update package.jsons

* Fix build scripts

* catch changes

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.2
 - @ohif/extension-dicom-html@0.0.4-alpha.2
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.2
 - @ohif/extension-dicom-pdf@0.0.8-alpha.2
 - @ohif/extension-vtk@0.1.4-alpha.2
 - @ohif/core@0.11.1-alpha.2
 - @ohif/i18n@0.2.3-alpha.2
 - @ohif/ui@0.2.18-alpha.2
 - @ohif/viewer@0.0.22-alpha.3

* fix eslint issues caused by eslint 6 and our react-app config

* Publish with canary tag

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.3
 - @ohif/extension-dicom-html@0.0.4-alpha.3
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.3
 - @ohif/extension-dicom-pdf@0.0.8-alpha.3
 - @ohif/extension-vtk@0.1.4-alpha.3
 - @ohif/core@0.11.1-alpha.3
 - @ohif/i18n@0.2.3-alpha.3
 - @ohif/ui@0.2.18-alpha.3
 - @ohif/viewer@0.0.22-alpha.4

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.4
 - @ohif/extension-dicom-html@0.0.4-alpha.4
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.4
 - @ohif/extension-dicom-pdf@0.0.8-alpha.4
 - @ohif/extension-vtk@0.1.4-alpha.4
 - @ohif/core@0.11.1-alpha.4
 - @ohif/i18n@0.2.3-alpha.4
 - @ohif/ui@0.2.18-alpha.4
 - @ohif/viewer@0.0.22-alpha.5

* Simplify build

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.5
 - @ohif/extension-dicom-html@0.0.4-alpha.5
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.5
 - @ohif/extension-dicom-pdf@0.0.8-alpha.5
 - @ohif/extension-vtk@0.1.4-alpha.5
 - @ohif/core@0.11.1-alpha.5
 - @ohif/i18n@0.2.3-alpha.5
 - @ohif/ui@0.2.18-alpha.5
 - @ohif/viewer@0.0.22-alpha.6

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.6
 - @ohif/extension-dicom-html@0.0.4-alpha.6
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.6
 - @ohif/extension-dicom-pdf@0.0.8-alpha.6
 - @ohif/extension-vtk@0.1.4-alpha.6
 - @ohif/core@0.11.1-alpha.6
 - @ohif/i18n@0.2.3-alpha.6
 - @ohif/ui@0.2.18-alpha.6
 - @ohif/viewer@0.0.22-alpha.7

* Split version and publish

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.7
 - @ohif/extension-dicom-html@0.0.4-alpha.7
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.7
 - @ohif/extension-dicom-pdf@0.0.8-alpha.7
 - @ohif/extension-vtk@0.1.4-alpha.7
 - @ohif/core@0.11.1-alpha.7
 - @ohif/i18n@0.2.3-alpha.7
 - @ohif/ui@0.2.18-alpha.7
 - @ohif/viewer@0.0.22-alpha.8

* Try simplify netlify build

* react-viewerbase --> @ohif/ui

* add test for stylus loader

* Try new way to specify publish path

* Use an output folder that won't be ignored

* Try move command

* fiddle with paths

* Dig for some information

* Make sure we're in root for our commands

* Remove discovery

* Setup script-tag example

* Fix typo

* Move config folder

* Update cornerstone extension to use shared/root webpack configs

* capture changes

* Update extension webpack configs

* Don't check in docz output

* Fix babel runtime resolution issue

* Simplify ui build steps

* Push in progress

* Shift directories

* Get viewer dev path to work

* Fix viewer commonjs build

* Fix build pwa config for viewers

* Make sure our package specific command can be called from root

* Update notes

* Fix imports and misc. merge notes

* Bump wado-image-loader version

* Switch up commands to remove webworkers copy

* Fix CI config

* Fix more broken package references

* Add react-dropzone

* Persist so e2e test can use

* Fix lockfile

* Use cypress orb to simplify CI

* Fix config

* Try again

* Install yarn latest for orb

* Install yarn a different way

* Wait on correct port

* Run tests in viewer project

* Fix cypress config

* Make Cypress happier - use default location

* Simplify e2e testing

* Capture UI changes since fork

* Catch core up

* Grab latest deps after merge

* Fix broken import

* Make sure cornerstone-wado-image-loader resolves to 3+

* Note regarding orbs

* Fix refresh on 404 routes

* Fix odd error for cornerstone-wado-image-loader

* Different target for UMD

* Simplify dev script

* Try to get fancy with netlify output

* Let's do it again

* Try to fix measurementTools issue

* See if we can get our lerna magic to work on merge to monorepo branch
2019-08-13 15:36:46 -04:00

138 lines
6.3 KiB
Markdown

<!-- prettier-ignore-start -->
<!-- markdownlint-disable -->
<div align="center">
<h1>@ohif/core</h1>
<p><strong>@ohif/core</strong> is a collection of useful functions and classes for building web-based medical imaging applications. This library helps power OHIF's <a href="https://github.com/OHIF/Viewers">zero-footprint DICOM viewer</a>.</p>
</div>
<hr />
[![NPM version][npm-version-image]][npm-url]
[![NPM downloads][npm-downloads-image]][npm-url]
[![All Contributors](https://img.shields.io/badge/all_contributors-6-orange.svg?style=flat-square)](#contributors)
[![MIT License][license-image]][license-url]
<!-- markdownlint-enable -->
<!-- prettier-ignore-end -->
## Why?
This library offers pre-packaged solutions for features common to Web-based
medical imaging viewers. For example:
- Hotkeys
- DICOM Web
- Hanging Protocols
- Managing a study's measurements
- Managing a study's DICOM metadata
- A flexible pattern for extensions
- And many others
It does this while remaining decoupled from any particular view library or
rendering logic. While we use it to power our [React Viewer][react-viewer], it
can be used with Vue, React, Vanilla JS, or any number of other frameworks.
## Getting Started
The documentation for this library is sparse. The best way to get started is to
look at its
[top level exports](https://github.com/OHIF/ohif-core/blob/master/src/index.js),
and explore the source code of features that interest you. If you want to see
how we use this library, you can check out [our viewer
implementation][react-viewer].
### Install
> This library is pre- v1.0. All realeases until a v1.0 have the possibility of
> introducing breaking changes. Please depend on an "exact" version in your
> projects to prevent issues caused by loose versioning.
```
// with npm
npm i @ohif/core --save-exact
// with yarn
yarn add @ohif/core --exact
```
### Usage
Usage is dependent on the feature(s) you want to leverage. The bulk of
`ohif-core`'s features are "pure" and can be imported and used in place.
_Example: retrieving study metadata from a server_
```js
import { studies } from "@ohif/core";
const studiesMetadata = await studies.retrieveStudiesMetadata(
server, // Object
studyInstanceUids, // Array
seriesInstanceUids // Array (optional)
);
```
### Contributing
It is notoriously difficult to setup multiple dependent repositories for
end-to-end testing and development. That's why we recommend writing and running
unit tests when adding and modifying features for this library. This allows us
to program in isolation without a complex setup, and has the added benefit of
producing well-tested business logic.
1. Clone this repository
2. Navigate to the project directory, and `yarn install`
3. To begin making changes, `yarn run dev`
4. To commit changes, run `yarn run cm`
When creating tests, place the test file "next to" the file you're testing.
[For example](https://github.com/OHIF/ohif-core/blob/master/src/index.test.js):
```js
// File
index.js;
// Test for file
index.test.js;
```
As you add and modify code, `jest` will watch for uncommitted changes and run
your tests, reporting the results to your terminal. Make a pull request with
your changes to `master`, and a core team member will review your work. If you
have any questions, please don't hesitate to reach out via a GitHub issue.
## Contributors
Thanks goes to these wonderful people
([emoji key](https://allcontributors.org/docs/en/emoji-key)):
<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section -->
<!-- prettier-ignore -->
<table><tr><td align="center"><a href="https://github.com/swederik"><img src="https://avatars3.githubusercontent.com/u/607793?v=4" width="100px;" alt="Erik Ziegler"/><br /><sub><b>Erik Ziegler</b></sub></a><br /><a href="https://github.com/OHIF/ohif-core/commits?author=swederik" title="Code">💻</a></td><td align="center"><a href="https://github.com/evren217"><img src="https://avatars1.githubusercontent.com/u/4920551?v=4" width="100px;" alt="Evren Ozkan"/><br /><sub><b>Evren Ozkan</b></sub></a><br /><a href="https://github.com/OHIF/ohif-core/commits?author=evren217" title="Code">💻</a></td><td align="center"><a href="https://github.com/galelis"><img src="https://avatars3.githubusercontent.com/u/2378326?v=4" width="100px;" alt="Gustavo André Lelis"/><br /><sub><b>Gustavo André Lelis</b></sub></a><br /><a href="https://github.com/OHIF/ohif-core/commits?author=galelis" title="Code">💻</a></td><td align="center"><a href="http://dannyrb.com/"><img src="https://avatars1.githubusercontent.com/u/5797588?v=4" width="100px;" alt="Danny Brown"/><br /><sub><b>Danny Brown</b></sub></a><br /><a href="https://github.com/OHIF/ohif-core/commits?author=dannyrb" title="Code">💻</a></td><td align="center"><a href="https://github.com/all-contributors/all-contributors-bot"><img src="https://avatars3.githubusercontent.com/u/46843839?v=4" width="100px;" alt="allcontributors[bot]"/><br /><sub><b>allcontributors[bot]</b></sub></a><br /><a href="https://github.com/OHIF/ohif-core/commits?author=allcontributors" title="Documentation">📖</a></td><td align="center"><a href="https://github.com/ivan-aksamentov"><img src="https://avatars0.githubusercontent.com/u/9403403?v=4" width="100px;" alt="Ivan Aksamentov"/><br /><sub><b>Ivan Aksamentov</b></sub></a><br /><a href="https://github.com/OHIF/ohif-core/commits?author=ivan-aksamentov" title="Code">💻</a> <a href="https://github.com/OHIF/ohif-core/commits?author=ivan-aksamentov" title="Tests">⚠️</a></td></tr></table>
<!-- ALL-CONTRIBUTORS-LIST:END -->
This project follows the
[all-contributors](https://github.com/all-contributors/all-contributors)
specification. Contributions of any kind welcome!
## License
MIT © [OHIF](https://github.com/OHIF)
<!--
Links:
-->
<!-- prettier-ignore-start -->
<!-- ROW -->
[npm-url]: https://npmjs.org/package/ohif-core
[npm-downloads-image]: https://img.shields.io/npm/dm/ohif-core.svg?style=flat-square
[npm-version-image]: https://img.shields.io/npm/v/ohif-core.svg?style=flat-square
[all-contributors-image]: https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat-square
[contributing-url]: https://github.com/OHIF/ohif-core/blob/master/CONTRIBUTING.md
[license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
[license-url]: LICENSE
<!-- Misc. -->
[react-viewer]: https://github.com/OHIF/Viewers/tree/react
<!-- prettier-ignore-end -->