ohif-viewer/extensions/cornerstone
Igor Octaviano e8842cf8ae
feat: Segmentations Settings UI - Phase 1 #1391 (#1392)
* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Rebase on master.

* format format format

* add basic extension parts

* Updated yarn lock

* Fetch derived/referenced displaysets in sidepanel

* Add buttons, expose seriesDescription, write notes for Danny.

* Add growcut tool extention. -> Move to a seperate repo.

* Change some text fields.

* expose dialog provider

* hide draggable area

* No pointer events for now; need to revisit

* Don't filter seg from the outset for now

* fiddling about

* fix path to series data

* fix logic to determine next available labelmapindex

* Ability to swtich between labelmaps

* Return a promise so we can make sure our labelmap is loaded before pulling metadata

* Better UI to toggle labelmaps

* Fix accidental untoggle of active labelmap for ui

* Remove brush tool from cornerstone extension

* Add cstools in preInit for seg extension

* Add buttons for seg magic

* Hide the measurements panel for now

* Slightly better seg/scissor icons

* Add eraser

* ability to switch segments

* seg color / switcher

* Fix vtk labelmap cache.

* sidepanel should scroll if there's overflow

* Use a fancier range slider

* Slightly prettier buttons

* Push in progress

* A bit more reactive; handle no-meta

* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0

* chore: kickstart preview

* Fix conflict issues

* Refactor panel

* Isolate increment functions

* Wip segment table

* Hide selector and add scroll to segmentation

* Increase width of segment description

* Hide not used items

* Add new select for segmentations

* Align ui

* Fix default segmentation

* Fix broken import test

* Get measurements panel back and add spacing to grouped buttons

* Hide brush and selector and refresh when switching segmentations

* Add pointer events back and fix broken tests for measurement table

* Update segment list when switching humbnails

* CR Update: Minor UI adjustments

* CR Update: Set active segment

* Move components to components folder

* Add new settings ui

* Integrate configuration

* Improve styles

* Float numbers

* Improve css

* Refresh settings menu if side panel changed

* Fix settings rendering logic and remove comments

* Extract components

* Remove not used tools

* Remove non used extension

* Use style variables and remove comments

* Remove non used dep from lock

* Remove tools

* Remove segmentation from toolbar

* Add todo and brushradius from config

* Fix packagejson growcut import

* Remove webpack config already defined in parent

* Update package json description

* Change component name to british english to us

* Improve prop types

* Rename cornerstone label map event

* Scope css

* Extract and add doc to helper

* Update jsdocs for getDerivedDatasets

* Add proptypes and cr updates

* Update tablistitem proptypes

* config is readonly, rollback destructuring

* Remove event for side panel

* Add jsdocs for util

* Extract getimageid to studymetada

* Use ohif log instead of console

* Remove specific style from side panel

* Fix default props for brush radius

* Descructure configuration props from settings component to avoid invalid props

* Update proptypes to be required (settings)

* Update readme

* Remove commandsmodule

* Get configuration module inside the component

* Set selected segment

* Rename extension and use modality to filter

* Fix for failing tests (#1423)

* hello world

* Finish rebase for Igor.

* Re-fix cornerstoneTools version that got messed up in merge.

* Fix reactivity of isDisabled, write implementation for the SEG panel.

* Nuke yarn.lock to stack CST to 4.12.0

* Remove debugger statements.

* fix: bump cornerstone-tools version to address toFixed issue

* test: force tests for MISTER^MR to navigate to study directly

* test: remove eraser tool test

* test: count is off by one

* test: don't save SR state for the time being

* test: disable more tests

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
2020-03-13 15:45:26 -04:00
..
.webpack fix: Add some code splitting for PWA build (#937) 2019-09-26 11:35:13 +02:00
src feat: Segmentations Settings UI - Phase 1 #1391 (#1392) 2020-03-13 15:45:26 -04:00
babel.config.js feat: 🎸 MeasurementService (#1314) 2020-02-10 14:15:05 -05:00
CHANGELOG.md chore(release): publish [skip ci] 2020-03-09 19:04:54 +00:00
jest.config.js feat: 🎸 MeasurementService (#1314) 2020-02-10 14:15:05 -05:00
LICENSE Chore/kill yalc with fire (#629) 2019-08-13 15:36:46 -04:00
package.json feat: Segmentations Settings UI - Phase 1 #1391 (#1392) 2020-03-13 15:45:26 -04:00
README.md feat: 🎸 Configuration so viewer tools can nix handles (#1304) 2019-12-20 12:15:40 -05:00

@ohif/extension-cornerstone

npm (scoped)

This extension adds support for viewing and manipulating 2D medical images via a viewport. The underlying implementation wraps the cornerstonejs/react-cornerstone-viewport, and provides basic commands and toolbar buttons for common actions.

Index

Extension Id: cornerstone

Commands Module

This extensions includes the following Commands and Command Definitions. These can be registered with @ohif/core's CommandManager. After registering the commands, they can be bound to hotkeys using the HotkeysManager and listed in the UserPreferences modal.

You can read more about [Commands][docs-commands], [Hotkeys][docs-hotkeys], and the [UserPreferences Modal][docs-userprefs] in their respective locations in the OHIF Viewer's documentation.

Command Name Description Store Contexts
rotateViewportCW viewports
rotateViewportCCW viewports
invertViewport viewports
flipViewportVertical viewports
flipViewportHorizontal viewports
scaleUpViewport viewports
scaleDownViewport viewports
fitViewportToWindow viewports
resetViewport viewports
clearAnnotations TODO
next/previous Image TODO
first/last Image TODO
nextViewportDisplaySet
previousViewportDisplaySet
setToolActive Activates tool for primary button/touch

Toolbar Module

Our toolbar module contains definitions for:

  • StackScroll
  • Zoom
  • Wwwc
  • Pan
  • Length
  • Angle
  • Reset
  • Cine

All use the ACTIVE_VIEWPORT::CORNERSTONE context.

Viewport Module

Our Viewport wraps [cornerstonejs/react-cornerstone-viewport][react-viewport] and is connected the redux store. This module is the most prone to change as we hammer out our Viewport interface.

Tool Configuration

Tools can be configured through extension configuration using the tools key:

  ...
  cornerstoneExtensionConfig: {
    tools: {
      ArrowAnnotate: {
        configuration: {
          getTextCallback: (callback, eventDetails) => callback(prompt('Enter your custom annotation')),
        },
      },
    },
  },
  ...

Annotate Tools Configuration

We currently support one property for annotation tools.

Hide handles

This extension configuration allows you to toggle on/off handle rendering for all annotate tools:

  ...
  cornerstoneExtensionConfig: {
    hideHandles: true,
  },
  ...

## Resources

### Repositories

- [cornerstonejs/react-cornerstone-viewport][react-viewport]
- [cornerstonejs/cornerstoneTools][cornerstone-tools]
- [cornerstonejs/cornerstone][cornerstone]

<!--
  Links
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<!-- prettier-ignore-start -->
[docs-commands]: https://www.com
[docs-hotkeys]: https://www.com
[docs-userprefs]: htt
[react-viewport]: https://github.com/cornerstonejs/react-cornerstone-viewport
[cornerstone-tools]: https://github.com/cornerstonejs/cornerstoneTools
[cornerstone]: https://github.com/cornerstonejs/cornerstone
<!-- prettier-ignore-end -->