chore(release): publish [skip ci]

- @ohif/viewer@0.50.9

.babelrc

@@ -1,18 +0,0 @@
-{
-  "presets": [
-    [
-      "@babel/preset-env",
-      {
-        "targets": {
-          "ie": "11"
-        }
-      }
-    ],
-    "@babel/preset-react"
-  ],
-  "plugins": [
-    "@babel/plugin-proposal-class-properties",
-    "@babel/plugin-transform-regenerator",
-    "@babel/plugin-transform-runtime"
-  ]
-}

.circleci/build-and-publish-docs.sh

@@ -0,0 +1,68 @@
+#!/bin/bash
+
+# Set directory to location of this script
+# https://stackoverflow.com/a/3355423/1867984
+cd "$(dirname "$0")"
+
+yarn -v
+node -v
+
+echo 'Installing Gitbook CLI'
+yarn global bin
+yarn config get prefix
+yarn config set prefix ~/.yarn
+export PATH="$PATH:`yarn global bin`"
+
+echo 'Running Gitbook installation'
+
+# Generate all version's GitBook output
+# For each directory in /docs ...
+cd ./../docs/
+for D in *; do
+    if [ -d "${D}" ]; then
+
+			echo "Generating output for: ${D}"
+			cd "${D}"
+
+			# Clear previous output, generate new
+			rm -rf _book
+			gitbook install
+			gitbook build
+
+			cd ..
+
+		fi
+done
+
+# Move CNAME File into `latest`
+cp CNAME ./latest/_book/CNAME
+
+# Create a history folder in our latest version's output
+mkdir ./latest/_book/history
+
+# Move each version's files to latest's history folder
+for D in *; do
+	if [ -d "${D}" ]; then
+		if [ "${D}" == v* ] ; then
+
+			echo "Moving ${D} to the latest version's history folder"
+
+			mkdir "./latest/_book/history/${D}"
+			cp -v -r "./${D}/_book"/* "./latest/_book/history/${D}"
+
+		fi
+	fi
+done
+
+# Back to repo root
+cd ..
+
+echo "Done generating documentation output"
+echo 'STARTING PUBLISH'
+
+# WILL ALWAYS FAIL IF INITIATED FROM PR BRANCH
+./node_modules/.bin/gh-pages \
+  --silent \
+  --repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
+  --message 'Autogenerated Message: [ci skip]' \
+	--dist docs/latest/_book

.circleci/config.yml

@@ -1,4 +1,4 @@
-version: 2
+version: 2.1
 
 ### ABOUT
 #
@@ -9,19 +9,31 @@ version: 2
 # create pull request previews and to update `https://docs.ohif.org`
 ###
 
+orbs:
+  codecov: codecov/codecov@1.0.5
+  cypress: cypress-io/cypress@1.8.0
+
 defaults: &defaults
-  working_directory: ~/repo
   docker:
-    - image: circleci/node:10.15.1
+    - image: circleci/node:10.16.0
+      environment:
+        TERM: xterm # Enable colors in term
+  working_directory: ~/repo
 
 jobs:
-  build_and_test:
+  PR_UNIT_TESTS:
     <<: *defaults
+
     steps:
-      # Download and cache dependencies
-      - checkout
+      # Enable yarn workspaces
+      - run: yarn config set workspaces-experimental true
+
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
       - restore_cache:
-          name: Restore Yarn Package Cache
+          name: Restore Yarn and Cypress Package Cache
           keys:
             # when lock file changes, use increasingly general patterns to restore cache
             - yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
@@ -33,63 +45,297 @@ jobs:
       - save_cache:
           name: Save Yarn Package Cache
           paths:
-            - ~/.cache/yarn
+            - ~/.cache ## Cache yarn and Cypress
           key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
 
-      # Build & Test
-      - run: yarn build
-      # https://www.viget.com/articles/using-junit-on-circleci-2-0-with-jest-and-eslint/
+      # RUN TESTS
       - run:
           name: 'JavaScript Test Suite'
-          command: yarn test:ci
-          environment:
-            JEST_JUNIT_OUTPUT: 'reports/junit/js-test-results.xml'
+          command: yarn run test:unit:ci
 
-      # Store result
-      - store_test_results:
-          path: reports/junit
-      - store_artifacts:
-          path: reports/junit
+      # PLATFORM/VIEWER
+      - run:
+          name: 'VIEWER: Combine report output'
+          command: |
+            viewerCov="/home/circleci/repo/platform/viewer/coverage"
+            touch "${viewerCov}/reports"
+            cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
+            cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
+      - codecov/upload:
+          file: '/home/circleci/repo/platform/viewer/coverage/reports'
+          flags: 'viewer'
+
+      # PLATFORM/CORE
+      - run:
+          name: 'CORE: Combine report output'
+          command: |
+            coreCov="/home/circleci/repo/platform/core/coverage"
+            touch "${coreCov}/reports"
+            cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
+            cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
+      - codecov/upload:
+          file: '/home/circleci/repo/platform/core/coverage/reports'
+          flags: 'core'
 
       # Persist :+1:
       - persist_to_workspace:
           root: ~/repo
           paths: .
-  # npm_publish:
-  #   <<: *defaults
-  #   steps:
-  #     - attach_workspace:
-  #         at: ~/repo
-  #     - run:
-  #         name: Avoid hosts unknown for github
-  #         command:
-  #           mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
-  #           no\n" > ~/.ssh/config
-  #     - run:
-  #         name: Publish using Semantic Release
-  #         command: npx semantic-release
+
+  MERGE_UNIT_TESTS:
+    <<: *defaults
+
+    steps:
+      # Enable yarn workspaces
+      - run: yarn config set workspaces-experimental true
+
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
+      - restore_cache:
+          name: Restore Yarn and Cypress Package Cache
+          keys:
+            # when lock file changes, use increasingly general patterns to restore cache
+            - yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
+            - yarn-packages-v1-{{ .Branch }}-
+            - yarn-packages-v1-
+      - run:
+          name: Install Dependencies
+          command: yarn install --frozen-lockfile
+      - save_cache:
+          name: Save Yarn Package Cache
+          paths:
+            - ~/.cache ## Cache yarn and Cypress
+          key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
+
+      # RUN TESTS
+      - run:
+          name: 'JavaScript Test Suite'
+          command: yarn run test:unit:ci
+
+      # PLATFORM/VIEWER
+      - run:
+          name: 'VIEWER: Combine report output'
+          command: |
+            viewerCov="/home/circleci/repo/platform/viewer/coverage"
+            touch "${viewerCov}/reports"
+            cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
+            cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
+      - codecov/upload:
+          file: '/home/circleci/repo/platform/viewer/coverage/reports'
+          flags: 'viewer'
+
+      # PLATFORM/CORE
+      - run:
+          name: 'CORE: Combine report output'
+          command: |
+            coreCov="/home/circleci/repo/platform/core/coverage"
+            touch "${coreCov}/reports"
+            cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
+            cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
+      - codecov/upload:
+          file: '/home/circleci/repo/platform/core/coverage/reports'
+          flags: 'core'
+
+      # Persist :+1:
+      - persist_to_workspace:
+          root: ~/repo
+          paths: .
+
+  npm_publish:
+    <<: *defaults
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      - run:
+          name: Avoid hosts unknown for github
+          command:
+            mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
+            no\n" > ~/.ssh/config
+      - run: git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
+      - run: git config --global user.name "ohif-bot"
+      - run:
+          name: Authenticate with registry
+          command:
+            echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
+      - run: npx lerna version
+      - run: npx lerna publish from-package
+
+      # Persist :+1:
+      - persist_to_workspace:
+          root: ~/repo
+          paths: .
+
+  docs_publish:
+    <<: *defaults
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      - run:
+          name: Avoid hosts unknown for github
+          command:
+            mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
+            no\n" > ~/.ssh/config
+      - run: git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
+      - run: git config --global user.name "ohif-bot"
+      - run: yarn global add gitbook-cli
+      - run: yarn global add gh-pages
+      - run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
+      - run: ~/repo/.circleci/build-and-publish-docs.sh
+
+  docker_publish:
+    <<: *defaults
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      - setup_remote_docker:
+          docker_layer_caching: true
+      - run:
+          name: Build and push Docker image
+          command: |
+            # This file will exist if a new version was published by
+            # our `semantic-release` command in the previous job
+            if [[ ! -e tmp/updated-version.txt ]]; then
+              exit 0
+            else
+              # Remove npm config
+              rm -f ./.npmrc
+              # Set our version number using vars
+              export IMAGE_VERSION=$(cat tmp/updated-version.txt)
+              export IMAGE_VERSION_FULL=v$IMAGE_VERSION.${CIRCLE_BUILD_NUM}
+              echo $IMAGE_VERSION
+              echo $IMAGE_VERSION_FULL
+              # Build our image, auth, and push
+              docker build --tag ohif/$IMAGE_NAME:$IMAGE_VERSION_FULL --tag ohif/$IMAGE_NAME:latest .
+              echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
+              docker push ohif/$IMAGE_NAME:$IMAGE_VERSION_FULL
+              docker push ohif/$IMAGE_NAME:latest
+            fi
+
+  viewer_demo_build:
+    <<: *defaults
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      # Build & Test
+      - run:
+          name: 'Build Demo Site, Upload SourceMaps, Send Deploy Notification'
+          command: |
+            npx lerna run build:viewer:demo --stream
+            # perl -i -pe 's#</head>#`cat .circleci/rollbar.html` #e' build/index.html
+            # export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
+            # export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
+            # export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
+            # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
+            # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
+            # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
+            curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
+      # Persist :+1:
+      - persist_to_workspace:
+          root: ~/repo
+          paths: .
+
+  viewer_demo_publish:
+    working_directory: ~/repo
+    docker:
+      - image: google/cloud-sdk
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      - setup_remote_docker:
+          docker_layer_caching: true
+      - run:
+          name: Node Test
+          command: npx lerna run build:viewer:demo --stream
+      # - run:
+      #     name: Deploy latest version to viewer.ohif.org
+      #     command: |
+      #       # https://circleci.com/docs/2.0/google-auth/#authorization
+      #       echo $GCLOUD_SERVICE_KEY | gcloud auth activate-service-account --key-file=-
+      #       gcloud --quiet config set project ${GOOGLE_PROJECT_ID}
+      #       gcloud --quiet config set compute/zone ${GOOGLE_COMPUTE_ZONE}
+      #       # Remove all files in Storage Bucket; Push latest
+      #       gsutil -m rm gs://$GOOGLE_STORAGE_BUCKET/**
+      #       gsutil -m rsync -R platform/viewer/dist gs://$GOOGLE_STORAGE_BUCKET
 
 workflows:
   version: 2
 
   # PULL REQUESTS
-  pull_requests:
+  PR_CHECKS:
     jobs:
-      - build_and_test:
+      - PR_UNIT_TESTS:
           filters:
             branches:
               ignore:
                 - master
                 - feature/*
                 - hotfix/*
+      # Cypress job added by `cypress-io` orb
+      - cypress/run:
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v' # Use yarn latest
+          yarn: true
+          store_artifacts: true
+          start: yarn run dev
+          wait-on: 'http://localhost:3000'
+          no-workspace: true # Don't persist workspace
+          working_directory: platform/viewer
+          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          post-steps:
+            - store_test_results:
+                path: cypress/results
+          requires:
+            - PR_UNIT_TESTS
 
-  # MERGE TO REACT
-  cut_release:
+  # MERGE TO MASTER
+  RELEASE:
     jobs:
-      - build_and_test:
+      - MERGE_UNIT_TESTS:
           filters:
             branches:
-              only: react
-      # - npm_publish:
+              only: master
+      # Cypress job added by `cypress-io` orb
+      - cypress/run:
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v' # Use yarn latest
+          yarn: true
+          record: true
+          store_artifacts: true
+          start: yarn run dev
+          wait-on: 'http://localhost:3000'
+          working_directory: platform/viewer
+          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          post-steps:
+            - store_test_results:
+                path: cypress/results
+          requires:
+            - MERGE_UNIT_TESTS
+      # Update NPM
+      - npm_publish:
+          requires:
+            - cypress/run
+      # Update docs.ohif.org
+      - docs_publish:
+          requires:
+            - cypress/run
+      # Update hub.docker.org
+      # - docker_publish:
       #     requires:
-      #       - build_and_test
+      #       - npm_publish
+      # Update viewer.ohif.org
+      - viewer_demo_build:
+          requires:
+            - cypress/run
+      - viewer_demo_publish:
+          requires:
+            - viewer_demo_build

.codecov.yml

@@ -0,0 +1,23 @@
+# ABOUT:
+# https://docs.codecov.io/docs/codecov-yaml
+#
+#
+# COMMIT STATUS:
+# https://docs.codecov.io/docs/commit-status
+coverage:
+  status:
+    project:
+      default:
+        threshold: 0.10%
+      core:
+        flags: core
+      viewer:
+        flags: viewer
+    patch: off
+flags:
+  core:
+    paths:
+      - platform/core
+  viewer:
+    paths:
+      - platform/viewer

.eslintrc

@@ -1,16 +0,0 @@
-{
-  "extends": [
-    "react-app",
-    "eslint:recommended",
-    "plugin:react/recommended"
-  ],
-  "parser": "babel-eslint",
-  "env": {
-    "jest": true
-  },
-  "settings": {
-    "react": {
-      "version": "detect",
-    },
-  },
-}

.eslintrc.json

@@ -0,0 +1,23 @@
+{
+  "extends": [
+    "react-app",
+    "eslint:recommended",
+    "plugin:react/recommended",
+    "plugin:prettier/recommended"
+  ],
+  "parser": "babel-eslint",
+  "env": {
+    "jest": true
+  },
+  "settings": {
+    "react": {
+      "version": "detect"
+    }
+  },
+  "globals": {
+    "cy": true,
+    "context": true,
+    "Cypress": true,
+    "assert": true
+  }
+}

.github/ISSUE_TEMPLATE/---bug-report.md

@@ -0,0 +1,39 @@
+---
+name: "\U0001F41B Bug report"
+about: Create a report to help us improve
+title: ''
+labels: 'Bug Report :bug:'
+assignees: ''
+---
+
+**Before Creating an issue**
+
+- Are you running the latest version?
+- Are you reporting to the correct repository?
+- Did you search existing issues?
+
+**Describe the bug**
+
+_A clear and concise description of what the bug is._
+
+**Steps To Reproduce**
+
+1. [First Step]
+2. [Second Step]
+3. ...
+
+```
+Please use code blocks to show formatted errors or code snippets
+```
+
+**Expected behavior**
+
+_A clear and concise description of what you expected to happen._
+
+**Environment**
+
+- OS: [e.g. iOS]
+- Browser [e.g. chrome, safari]
+- Version [e.g. 22]
+
+**Additional context**

.github/ISSUE_TEMPLATE/---feature-request.md

@@ -0,0 +1,19 @@
+---
+name: "\U0001F680 Feature request"
+about: Suggest an idea for this project
+title: ''
+labels: enhancement
+assignees: ''
+---
+
+<!-- ## Awesome, do you have an idea? 😍
+
+If you have a **feature request, improvement or idea**, check [our official roadmap](https://github.com/OHIF/react-viewerbase/projects) to see if it is already planned! -->
+
+<!-- ### 👉 &nbsp; [Go to Roadmap](https://github.com/OHIF/react-viewerbase/projects)
+
+If your feature request isn't there, continue with this issue and we can discuss
+it 🤟 -->
+
+Please include the reasons why you think your change should be made, and any
+supporting evidence that helps us asses its value and priority.

.github/ISSUE_TEMPLATE/---support-question.md

@@ -0,0 +1,18 @@
+---
+name: "\U0001F917 Support Question"
+about: "I have a question \U0001F4AC"
+title: ''
+labels: question
+assignees: ''
+---
+
+We are a small team with limited resources. Your question is much more likely to
+be answered if it is
+[a good question](https://stackoverflow.com/help/how-to-ask)
+
+**Description**
+
+Questions can often be answered by our documentation. Unable to find an answer
+in our docs? We'll try to help. In the meantime, if you answer your own
+question, please respond with the answer here so that others may benefit as
+well. Better yet, open a PR to expand our docs ^\_^

.github/stale.yml

@@ -0,0 +1,26 @@
+# GitHub App: Stale
+# https://github.com/apps/stale
+#
+# Number of days of inactivity before an issue becomes stale
+daysUntilStale: 21
+# Number of days of inactivity before a stale issue is closed
+daysUntilClose: 7
+# Issues with these labels will never be considered stale
+exemptLabels:
+  - 'Story 🙌'
+  - 'Bug: Verified 🐛'
+  - 'Task: CI/Tooling 🤖'
+  - 'Task: Docs 📖'
+  - 'Task: Refactor 🛠'
+  - 'Task: Tests 🔬'
+  - 'Triage 🏳️'
+  - 'Announcement 🎉'
+# Label to use when marking an issue as stale
+staleLabel: 'Stale 🥖'
+# Comment to post when marking an issue as stale. Set to `false` to disable
+markComment: >
+  This issue has been automatically marked as stale because it has not had
+  recent activity. It will be closed if no further activity occurs. Thank you
+  for your contributions.
+# Comment to post when closing a stale issue. Set to `false` to disable
+closeComment: false

.gitignore

@@ -8,6 +8,7 @@ docs/_book
 src/version.js
 junit.xml
 coverage/
+.docz/
 
 # YALC (for Erik)
 .yalc
@@ -20,3 +21,14 @@ npm-debug.log
 package-lock.json
 yarn-error.log
 .DS_Store
+
+# Common Example Data Directories
+sampledata/
+example/deps/
+docker/dcm4che/dcm4che-arc
+
+# Cypress test results
+cypress/videos/
+
+# Locize settings
+.locize

.jscsrc

@@ -1,45 +0,0 @@
-{
-    "requireCurlyBraces": {
-        "keywords": [ "if", "else", "for", "while", "do" ],
-        "allExcept" : ["return" , "continue", "break"]
-    },
-    "requireSpaceAfterKeywords": [ "if", "else", "for", "while", "do", "switch", "return" ],
-    "requireSpacesInFunctionExpression": {
-        "beforeOpeningCurlyBrace": true
-    },
-    "disallowSpacesInFunctionExpression": {
-        "beforeOpeningRoundBrace": true
-    },
-    "disallowSpacesInsideParentheses": true,
-    "disallowKeywordsOnNewLine": ["else"],
-    "disallowNewlineBeforeBlockStatements": true,
-    "requirePaddingNewLinesAfterUseStrict": true,
-    "requirePaddingNewLinesAfterBlocks": {
-        "allExcept": ["inCallExpressions", "inArrayExpressions", "inProperties"]
-    },
-    "requireObjectKeysOnNewLine": true,
-    "requireSemicolons": true,
-    "requireSpaceAfterBinaryOperators": true,
-    "requireSpaceAfterComma": true,
-    "requireSpaceBeforeObjectValues": true,
-    "requireSpacesInsideObjectBrackets": "all",
-    "requireLineBreakAfterVariableAssignment": true,
-    "requireSpaceBeforeBinaryOperators": ["+", "-", "/", "*", "=", "==", "===", "!=", "!=="],
-    "disallowSpaceAfterPrefixUnaryOperators": ["++", "--", "+", "-"],
-    "disallowSpaceBeforePostfixUnaryOperators": ["++", "--"],
-    "disallowKeywords": [ "with" ],
-    "disallowMultipleLineBreaks": true,
-    "requireLineFeedAtFileEnd": true,
-    "disallowSpaceAfterObjectKeys": true,
-    "disallowQuotedKeysInObjects": true,
-    "disallowMultipleSpaces": true,
-    "disallowVar": true,
-    "validateLineBreaks": "LF",
-    "validateIndentation": 4,
-    "validateQuoteMarks": {
-        "mark": "'",
-        "escape": true
-    },
-    "validateParameterSeparator": ", ",
-    "requireDollarBeforejQueryAssignment": true
-}

.jshintrc

@@ -1,93 +0,0 @@
-{
-    // JSHint Default Configuration File (as on JSHint website)
-    // See http://jshint.com/docs/ for more details
-
-    "maxerr"        : 50,       // {int} Maximum error before stopping
-
-    // Enforcing
-    "bitwise"       : true,     // true: Prohibit bitwise operators (&, |, ^, etc.)
-    "camelcase"     : false,    // true: Identifiers must be in camelCase
-    "curly"         : false,     // true: Require {} for every new block or scope
-    "eqeqeq"        : true,     // true: Require triple equals (===) for comparison
-    "forin"         : true,     // true: Require filtering for..in loops with obj.hasOwnProperty()
-    "freeze"        : true,     // true: prohibits overwriting prototypes of native objects such as Array, Date etc.
-    "immed"         : false,    // true: Require immediate invocations to be wrapped in parens e.g. `(function () { } ());`
-    "latedef"       : false,    // true: Require variables/functions to be defined before being used
-    "newcap"        : false,    // true: Require capitalization of all constructor functions e.g. `new F()`
-    "noarg"         : true,     // true: Prohibit use of `arguments.caller` and `arguments.callee`
-    "noempty"       : true,     // true: Prohibit use of empty blocks
-    "nonbsp"        : true,     // true: Prohibit "non-breaking whitespace" characters.
-    "nonew"         : false,    // true: Prohibit use of constructors for side-effects (without assignment)
-    "plusplus"      : false,    // true: Prohibit use of `++` and `--`
-    "quotmark"      : false,    // Quotation mark consistency:
-                                //   false    : do nothing (default)
-                                //   true     : ensure whatever is used is consistent
-                                //   "single" : require single quotes
-                                //   "double" : require double quotes
-    "undef"         : true,     // true: Require all non-global variables to be declared (prevents global leaks)
-    "unused"        : "vars",   // Unused variables:
-                                //   true     : all variables, last function parameter
-                                //   "vars"   : all variables only
-                                //   "strict" : all variables, all function parameters
-    "strict"        : false,    // true: Requires all functions run in ES5 Strict Mode
-    "maxparams"     : false,    // {int} Max number of formal params allowed per function
-    "maxdepth"      : false,    // {int} Max depth of nested blocks (within functions)
-    "maxstatements" : false,    // {int} Max number statements per function
-    "maxcomplexity" : false,    // {int} Max cyclomatic complexity per function
-    "maxlen"        : false,    // {int} Max number of characters per line
-    "varstmt"       : false,    // true: Disallow any var statements. Only `let` and `const` are allowed.
-
-    // Relaxing
-    "asi"           : false,     // true: Tolerate Automatic Semicolon Insertion (no semicolons)
-    "boss"          : false,     // true: Tolerate assignments where comparisons would be expected
-    "debug"         : false,     // true: Allow debugger statements e.g. browser breakpoints.
-    "eqnull"        : false,     // true: Tolerate use of `== null`
-    "es5"           : true,      // true: Allow ES5 syntax (ex: getters and setters)
-    "esnext"        : true,      // true: Allow ES.next (ES6) syntax (ex: `const`)
-    "moz"           : false,     // true: Allow Mozilla specific syntax (extends and overrides esnext features)
-                                 // (ex: `for each`, multiple try/catch, function expression…)
-    "evil"          : false,     // true: Tolerate use of `eval` and `new Function()`
-    "expr"          : false,     // true: Tolerate `ExpressionStatement` as Programs
-    "funcscope"     : false,     // true: Tolerate defining variables inside control statements
-    "globalstrict"  : false,     // true: Allow global "use strict" (also enables 'strict')
-    "iterator"      : false,     // true: Tolerate using the `__iterator__` property
-    "lastsemic"     : false,     // true: Tolerate omitting a semicolon for the last statement of a 1-line block
-    "laxbreak"      : false,     // true: Tolerate possibly unsafe line breakings
-    "laxcomma"      : false,     // true: Tolerate comma-first style coding
-    "loopfunc"      : false,     // true: Tolerate functions being defined in loops
-    "multistr"      : false,     // true: Tolerate multi-line strings
-    "noyield"       : false,     // true: Tolerate generator functions with no yield statement in them.
-    "notypeof"      : false,     // true: Tolerate invalid typeof operator values
-    "proto"         : false,     // true: Tolerate using the `__proto__` property
-    "scripturl"     : false,     // true: Tolerate script-targeted URLs
-    "shadow"        : false,     // true: Allows re-define variables later in code e.g. `var x=1; x=2;`
-    "sub"           : false,     // true: Tolerate using `[]` notation when it can still be expressed in dot notation
-    "supernew"      : false,     // true: Tolerate `new function () { ... };` and `new Object;`
-    "validthis"     : false,     // true: Tolerate using this in a non-constructor function
-
-    // Environments
-    "browser"       : true,     // Web Browser (window, document, etc)
-    "browserify"    : false,    // Browserify (node.js code in the browser)
-    "couch"         : false,    // CouchDB
-    "devel"         : false,    // Development/debugging (alert, confirm, etc)
-    "dojo"          : false,    // Dojo Toolkit
-    "jasmine"       : false,    // Jasmine
-    "jquery"        : true,     // jQuery
-    "mocha"         : false,    // Mocha
-    "mootools"      : false,    // MooTools
-    "node"          : false,    // Node.js
-    "nonstandard"   : false,    // Widely adopted globals (escape, unescape, etc)
-    "phantom"       : false,    // PhantomJS
-    "prototypejs"   : false,    // Prototype and Scriptaculous
-    "qunit"         : false,    // QUnit
-    "rhino"         : false,    // Rhino
-    "shelljs"       : false,    // ShellJS
-    "typed"         : false,    // Globals for typed array constructions
-    "worker"        : false,    // Web Workers
-    "wsh"           : false,    // Windows Scripting Host
-    "yui"           : false,    // Yahoo User Interface
-    "globals"       : {
-        "require": true,
-        "Package": true         // Meteor Package definition
-    }
-}

.netlify/build-deploy-preview.sh

@@ -0,0 +1,27 @@
+#!/bin/bash
+
+# Set directory to location of this script
+# https://stackoverflow.com/a/3355423/1867984
+cd "$(dirname "$0")"
+cd .. # Up to project root
+
+# Helpful to verify which versions we're using
+yarn -v
+node -v
+
+# Install build deps and all monorepo package dependencies. Yarn Workspaces
+# should also symlink all projects appropriately
+yarn install --no-ignore-optional --pure-lockfile
+
+# Build && Move PWA Output
+yarn run build:ci
+mkdir -p ./.netlify/www/pwa
+mv platform/viewer/dist/* .netlify/www/pwa -v
+
+# Build && Move script output
+# yarn run build:package
+
+echo 'Nothing left to see here. Go home, folks.'
+
+# Build using react-scripts
+# npx cross-env PUBLIC_URL=/demo APP_CONFIG=config/netlify.js react-scripts --max_old_space_size=4096 build

.netlify/www/index.html

@@ -0,0 +1,14 @@
+<html>
+  <head>
+    <title>OHIF Viewer: Deploy Preview</title>
+  </head>
+  <body>
+    <h1>Index of Previews</h1>
+
+    <ul>
+      <li>
+        <a href="/pwa">Progressive Web App</a>
+      </li>
+    </ul>
+  </body>
+</html>

.prettierrc

@@ -3,7 +3,6 @@
   "printWidth": 80,
   "proseWrap": "always",
   "tabWidth": 2,
-  "semi": false,
-  "singleQuote": true,
-  "endOfLine": "lf"
+  "semi": true,
+  "singleQuote": true
 }

.scripts/dev.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+# https://github.com/shelljs/shelljs
+# https://github.com/shelljs/shelljs#exclude-options
+PROJECT=$1
+
+if [ -z "$PROJECT" ]
+then
+  # Default
+  npx lerna run dev:viewer
+else
+  eval "npx lerna run dev:$PROJECT"
+fi
+
+read -p 'Press [Enter] key to continue...'

.vscode/extensions.json

@@ -2,6 +2,7 @@
   "recommendations": [
     "esbenp.prettier-vscode",
     "sysoev.language-stylus",
-    "dbaeumer.vscode-eslint"
+    "dbaeumer.vscode-eslint",
+    "mikestead.dotenv"
   ]
 }

.vscode/settings.json

@@ -1,30 +1,30 @@
 {
-    "editor.rulers": [80, 120],
-  
-    // ===
-    // Spacing
-    // ===
-  
-    "editor.insertSpaces": true,
-    "editor.tabSize": 2,
-    "editor.trimAutoWhitespace": true,
-    "files.trimTrailingWhitespace": true,
-    "files.eol": "\n",
-    "files.insertFinalNewline": true,
-    "files.trimFinalNewlines": true,
-  
-    // ===
-    // Event Triggers
-    // ===
-  
-    "editor.formatOnSave": true,
-    "eslint.autoFixOnSave": true,
-    "eslint.run": "onSave",
-    "eslint.validate": [
-      { "language": "javascript", "autoFix": true },
-      { "language": "javascriptreact", "autoFix": true }
-    ],
-    "prettier.disableLanguages": [],
-    "prettier.endOfLine": "lf"
-  }
-  
+  "editor.rulers": [80, 120],
+
+  // ===
+  // Spacing
+  // ===
+
+  "editor.insertSpaces": true,
+  "editor.tabSize": 2,
+  "editor.trimAutoWhitespace": true,
+  "files.trimTrailingWhitespace": true,
+  "files.eol": "\n",
+  "files.insertFinalNewline": true,
+  "files.trimFinalNewlines": true,
+
+  // ===
+  // Event Triggers
+  // ===
+
+  "editor.formatOnSave": true,
+  "eslint.autoFixOnSave": true,
+  "eslint.run": "onSave",
+  "eslint.validate": [
+    { "language": "javascript", "autoFix": true },
+    { "language": "javascriptreact", "autoFix": true }
+  ],
+  "prettier.disableLanguages": [],
+  "prettier.endOfLine": "lf",
+  "workbench.colorCustomizations": {}
+}

.webpack/webpack.common.js

@@ -0,0 +1,127 @@
+const path = require('path');
+const webpack = require('webpack');
+const autoprefixer = require('autoprefixer');
+// const ExtractCssChunks = require('extract-css-chunks-webpack-plugin');
+
+module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
+  return {
+    entry: {
+      bundle: `${SRC_DIR}/index.js`,
+    },
+    context: SRC_DIR,
+    module: {
+      rules: [
+        /**
+         * JSX
+         */
+        {
+          test: /\.jsx?$/,
+          exclude: [/node_modules/, /packages\\extension/],
+          loader: 'babel-loader',
+          options: {
+            // Find babel.config.js in monorepo root
+            // https://babeljs.io/docs/en/options#rootmode
+            rootMode: 'upward',
+            presets: [
+              [
+                '@babel/preset-env',
+                {
+                  // Do not transform ES6 modules to another format.
+                  // Webpack will take care of that.
+                  modules: false,
+                  targets: {
+                    ie: '11',
+                  },
+                  // https://babeljs.io/docs/en/babel-preset-env#usebuiltins
+                  useBuiltIns: 'usage',
+                  // https://babeljs.io/docs/en/babel-preset-env#corejs
+                  corejs: 3,
+                },
+              ],
+            ],
+          },
+        },
+        /**
+         * Stylus to CSS
+         * CSS to CommonJS
+         * Style nodes from JS Strings
+         */
+        {
+          test: /\.styl$/,
+          use: [
+            { loader: 'style-loader' },
+            { loader: 'css-loader' },
+            { loader: 'stylus-loader' },
+          ],
+        },
+        {
+          test: /\.css$/,
+          use: [
+            'style-loader',
+            // ExtractCssChunks.loader,
+            { loader: 'css-loader', options: { importLoaders: 1 } },
+            {
+              loader: 'postcss-loader',
+              options: {
+                config: {
+                  path: './postcss.config.js',
+                },
+                plugins: () => [autoprefixer('last 2 version', 'ie >= 11')],
+              },
+            },
+          ],
+        },
+        /**
+         * This allows us to include web workers in our bundle, and VTK.js
+         * web workers in our bundle. While this increases bundle size, it
+         * cuts down on the number of includes we need for `script tag` usage.
+         */
+        {
+          test: /\.worker\.js$/,
+          include: /vtk\.js[\/\\]Sources/,
+          use: [
+            {
+              loader: 'worker-loader',
+              options: { inline: true, fallback: false },
+            },
+          ],
+        },
+        /**
+         * This is exclusively used by `vtk.js` to bundle glsl files.
+         */
+        {
+          test: /\.glsl$/i,
+          include: /vtk\.js[\/\\]Sources/,
+          loader: 'shader-loader',
+        },
+      ],
+    },
+    resolve: {
+      // Which directories to search when resolving modules
+      modules: [
+        // Modules specific to this package
+        path.resolve(__dirname, '../node_modules'),
+        // Hoisted Yarn Workspace Modules
+        path.resolve(__dirname, '../../../node_modules'),
+        SRC_DIR,
+      ],
+      // Attempt to resolve these extensions in order.
+      extensions: ['.js', '.jsx', '.json', '*'],
+      // symlinked resources are resolved to their real path, not their symlinked location
+      symlinks: true,
+    },
+    plugins: [
+      new webpack.DefinePlugin({
+        'process.env.NODE_ENV': JSON.stringify(process.env.NODE_ENV),
+        'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
+        'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
+        'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || ''),
+      }),
+    ],
+    // Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
+    // For issue in cornerstone-wado-image-loader
+    node: {
+      fs: 'empty',
+    },
+  };
+};

LICENSE

@@ -1,6 +1,6 @@
-The MIT License (MIT)
+MIT License
 
-Copyright (c) 2015 Open Health Imaging Foundation
+Copyright (c) 2018 Open Health Imaging Foundation
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

README-react.md

@@ -1,32 +0,0 @@
-# OHIF Viewer (React Version)
-
-Disclaimer: Work in Progress
-
-## To run locally
-
-1. `yarn install`
-1. `yarn start`
-1. `Go to http://localhost:5000`
-
-To user another DICOMWeb endpoint, adapt index.js
-
-## To include in your projects
-
-Please refer to the example in the example directory. To set the DICOMWeb
-endpoint and do other customization, adapt index.html.
-
-### Build
-
-1. `yarn install`
-1. `yarn build`
-
-### Run the example
-
-1. `cd example`
-1. `yarn install`
-1. `yarn start`
-1. `Go to http://localhost:5000`
-
-## License
-
-MIT © [OHIF](https://github.com/OHIF)

README.md

@@ -1,169 +1,236 @@
 <!-- prettier-ignore-start -->
 <!-- markdownlint-disable -->
 <div align="center">
-  <h1>ohif-viewer</h1>
-  <p><strong>ohif-viewer</strong> is a zero-footprint medical image viewer. It is a configurable and exstensible progressive web application with out of the box support for PACS like orthanc, dcm4che, and Google's Healthcare API.</p>
+  <h1>OHIF Medical Imaging Viewer</h1>
+  <p><strong>The OHIF Viewer</strong> is a zero-footprint medical image viewer provided by the <a href="http://ohif.org/">Open Health Imaging Foundation (OHIF)</a>. It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support <a href="https://www.dicomstandard.org/dicomweb/">DICOMweb</a>.</p>
 </div>
 
 
 <div align="center">
-  <a href="https://deploy-preview-398--ohif.netlify.com/"><strong>Read The Docs</strong></a> |
-  <a href="https://github.com/OHIF/Viewers/tree/react/docs/latest">Edit the docs</a>
+  <a href="https://docs.ohif.org/"><strong>Read The Docs</strong></a> |
+  <a href="https://github.com/OHIF/Viewers/tree/master/docs/latest">Edit the docs</a>
+</div>
+<div align="center">
+  <a href="https://docs.ohif.org/demo">Demo</a> |
+  <a href="https://ohif.canny.io/">Roadmap</a> |
+  <a href="https://react.ohif.org/">Component Library</a>
 </div>
 
 
 <hr />
 
-[![CircleCI][circleci-image]][circleci-url]
-[![codecov][codecov-image]][codecov-url]
-[![All Contributors][all-contributors-image]][contributing-url]
-[![code style: prettier][prettier-image]][prettier-url]
-[![semantic-release][semantic-image]][semantic-url]
-
 [![NPM version][npm-version-image]][npm-url]
 [![NPM downloads][npm-downloads-image]][npm-url]
+[![Pulls][docker-pulls-img]][docker-image-url]
 [![MIT License][license-image]][license-url]
-<!-- markdownlint-enable -->
-<!-- prettier-ignore-end -->
 
-## Why?
+[![Netlify Status][netlify-image]][netlify-url]
+[![CircleCI][circleci-image]][circleci-url]
+[![codecov][codecov-image]][codecov-url]
+[![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors)
 
-Building a web based medical imaging viewer from scratch is time intensive, hard
-to get right, and expensive. Instead of re-inventing the wheel, you can use the
-OHIF Viewer as a rock solid platform to build on top of. The Viewer is a
-[React][react-url] [Progressive Web Application][pwa-url] that can be embedded
-in existing applications via it's [packaged source
-(ohif-viewer)][ohif-viewer-url] or hosted stand-alone. The Viewer exposes
-[configuration][configuration-url] and [extensions][extensions-url] to support
-workflow customization and advanced functionality at common integration points.
+## What?
 
-If you're interested in using the OHIF Viewer, but you're not sure it supports
-your use case
-[check out our docs](https://deploy-preview-398--ohif.netlify.com/). Still not
-sure, or you would like to propose new features? Don't hesitate to
-[create an issue](https://github.com/OHIF/Viewers/issues) or open a pull request
-^\_^
+The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.
 
-## Getting Started
+Almost everything offers some degree of customization and configuration. If it doesn't support something you need, we accept pull requests and have an ever improving Extension System.
 
-This readme is specific to testing and developing locally. If you're more
-interested in production deployment strategies,
-[you can check out our documentation on publishing](https://deploy-preview-398--ohif.netlify.com/).
+## Why Choose Us
 
-Want to play around before you dig in?
-[Check out our LIVE Demo](https://viewer.ohif.org/)
+### Community & Experience
 
-### Setup
+The OHIF Viewer is a collaborative effort that has served as the basis for many active, production, and FDA Cleared medical imaging viewers. It benefits from our extensive community's collective experience, and from the sponsored contributions of individuals, research groups, and commercial organizations.
 
-_Requirements:_
+### Built to Adapt
 
-- [NodeJS & NPM](https://nodejs.org/en/download/)
-- [Yarn](https://yarnpkg.com/lang/en/docs/install/)
+...
 
-_Steps:_
 
-1. Fork this repository
-2. Clone your forked repository (your `origin`)
+### Support
 
-- `git clone git@github.com:YOUR_GITHUB_USERNAME/Viewers.git`
+...
 
-3. Add `OHIF/Viewers` as a `remote` repository (the `upstream`)
+## Quick Start Deployment
 
-- `git remote add upstream git@github.com:OHIF/Viewers.git`
+> This is only one of many ways to configure and deploy the OHIF Viewer. To learn more about your options, and how to choose the best one for your requirements, check out [our deployment recipes and documentation](https://docs.ohif.org/deployment/).
 
-### Developing Locally
+The fastest and easiest way to get started is to include the OHIF Viewer with a script tag. In practice, this is as simple as:
 
-In your cloned repository's root folder, run:
+- Including the following dependencies with script tags:
+   - [React](https://unpkg.com/react@16/umd/react.production.min.js)
+   - [React Dom](https://unpkg.com/react-dom@16/umd/react-dom.production.min.js)
+   - The [OHIF Viewer](https://unpkg.com/ohif-viewer@0.19.5/dist/index.umd.js)
+- Have an element with an ID of `root` on the page
+- Configure the OHIF Viewer at `window.config`:
 
 ```js
-// Restore dependencies
+window.config = {
+  routerBasename: "/",
+  servers: {
+    dicomWeb: [
+      {
+        name: "DCM4CHEE",
+        qidoRoot: "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs",
+        wadoRoot: "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs",
+        qidoSupportsIncludeField: true,
+        imageRendering: "wadors",
+        thumbnailRendering: "wadors"
+      }
+    ]
+  }
+};
+```
+
+- Install the viewer: `window.OHIFStandaloneViewer.installViewer(window.config);`
+
+This exact setup is demonstrated in this [CodeSandbox](https://codesandbox.io/s/ohif-viewer-script-tag-usage-c4u4t) and in our [Embedding The Viewer](https://docs.ohif.org/deployment/recipes/embedded-viewer.html) deployment recipe.
+
+## Developing
+
+### Requirements
+
+- [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
+- [Node 8+](https://nodejs.org/en/)
+- Yarn Workspaces should be enabled on your machine:
+  - `yarn config set workspaces-experimental true`
+
+### Getting Started
+
+1. [Fork this repository][how-to-fork]
+2. [Clone your forked repository][how-to-clone]
+   - `git clone https://github.com/YOUR-USERNAME/Viewers.git`
+3. Navigate to the cloned project's directory
+4. Add this repo as a `remote` named `upstream`
+   - `git remote add upstream https://github.com/OHIF/Viewers.git`
+5. `yarn install` to restore dependencies and link projects
+
+#### To Develop
+
+_From this repository's root directory:_
+
+```bash
+# Enable Yarn Workspaces
+yarn config set workspaces-experimental true
+
+# Restore dependencies
 yarn install
-
-// Stands up local server to host Viewer.
-// Viewer connects to our public cloud PACS by default
-yarn start
 ```
 
-For more advanced local development scenarios, like using your own locally
-hosted PACS and test data,
-[check out our Essential: Getting Started](https://deploy-preview-398--ohif.netlify.com/essentials/getting-started.html)
-guide.
+## Commands
 
-### Contributing
+These commands are available from the root directory. Each project directory also supports a number of commands that can be found in their respective `README.md` and `project.json` files.
 
-> Large portions of the Viewer's functionality are maintained in other
-> repositories. To get a better understanding of the Viewer's architecture and
-> "where things live", read
-> [our docs on the Viewer's architecture](https://deploy-preview-398--ohif.netlify.com/advanced/architecture.html#diagram)
+| Yarn Commands        | Description                                                   |
+| -------------------- | ------------------------------------------------------------- |
+| **Develop**          |                                                               |
+| `dev` or `start`     | Default development experience for Viewer                     |
+| `dev:project <package-name>` | Replace with `core`, `ui`, `i18n`, `cornerstone`, `vtk`, etc. |
+| `test:unit`          | Jest multi-project test runner; overall coverage              |
+| **Deploy**           |                                                               |
+| `build`*             | Builds production output for our PWA Viewer                   |
+| `build:package`*             | Builds production `commonjs` output for our Viewer                 |
+| `build:package-all`*     | Builds commonjs bundles for all projects                      |
 
-It is notoriously difficult to setup multiple dependent repositories for
-end-to-end testing and development. That's why we recommend writing and running
-unit tests when adding and modifying features. This allows us to program in
-isolation without a complex setup, and has the added benefit of producing
-well-tested business logic.
 
-1. Clone this repository
-2. Navigate to the project directory, and `yarn install`
-3. To begin making changes, `yarn run dev`
-4. To commit changes, run `yarn run cm`
+\* - For more information on our different builds, check out our [Deploy Docs][deployment-docs]
 
-When creating tests, place the test file "next to" the file you're testing.
-[For example](https://github.com/OHIF/Viewers/blob/react/src/index.test.js):
+## Projects
 
-```js
-// File
-index.js
+The OHIF Medical Image Viewing Platform is maintained as a
+[`monorepo`][monorepo]. This means that this repository, instead of containing a
+single project, contains many projects. If you explore our project structure,
+you'll see the following:
 
-// Test for file
-index.test.js
+```bash
+.
+├── extensions              #
+│   ├── _example            # Skeleton of example extension
+│   ├── cornerstone         # 2D images w/ Cornerstone.js
+│   ├── dicom-html          # Structured Reports as HTML in viewport
+│   ├── dicom-microscopy    # Whole slide microscopy viewing
+│   ├── dicom-pdf           # View DICOM wrapped PDFs in viewport
+│   └── vtk                 # MPR and Volume support w/ VTK.js
+│
+├── platform                #
+│   ├── core                # Business Logic
+│   ├── i18n                # Internationalization Support
+│   ├── ui                  # React component library
+│   └── viewer              # Connects platform and extension projects
+│
+├── ...                     # misc. shared configuration
+├── lerna.json              # MonoRepo (Lerna) settings
+├── package.json            # Shared devDependencies and commands
+└── README.md               # This file
 ```
 
-As you add and modify code, `jest` will watch for uncommitted changes and run
-your tests, reporting the results to your terminal. Make a pull request with
-your changes to `master`, and a core team member will review your work. If you
-have any questions, please don't hesitate to reach out via a GitHub issue.
+Want to better understand why and how we've structured this repository? Read
+more about it in our [Architecture Documentation][ohif-architecture].
 
-## Issues
+### Platform
 
-_Looking to contribute? Look for the [Good First Issue][good-first-issue]
-label._
+These projects comprise the
 
-### 🐛 Bugs
+| Name                            | Description | Links |
+| ------------------------------- | ----------- | ----- |
+| [@ohif/core][platform-core]     |             | NPM   |
+| [@ohif/i18n][platform-i18n]     |             | NPM   |
+| [@ohif/viewer][platform-viewer] |             | NPM   |
+| [@ohif/ui][platform-ui]         |             | NPM   |
 
-Please file an issue for bugs, missing documentation, or unexpected behavior.
+### Extensions
 
-[**See Bugs**][bugs]
+This is a list of Extensions maintained by the OHIF Core team. It's possible to customize and configure these extensions, and you can even create your own. You can [read more about extensions here][ohif-extensions].
 
-### 💡 Feature Requests
+| Name                                                           | Description | Links |
+| -------------------------------------------------------------- | ----------- | ----- |
+| [@ohif/extension-cornestone][extension-cornerstone]            |             | NPM   |
+| [@ohif/extension-dicom-html][extension-dicom-html]             |             | NPM   |
+| [@ohif/extension-dicom-microscopy][extension-dicom-microscopy] |             | NPM   |
+| [@ohif/extension-dicom-pdf][extension-dicom-pdf]               |             | NPM   |
+| [@ohif/extension-vtk][extension-vtk]                           |             | NPM   |
 
-Please file an issue to suggest new features. Vote on feature requests by adding
-a 👍. This helps maintainers prioritize what to work on.
+## Acknowledgments
 
-[**See Feature Requests**][requests-feature]
+To acknowledge the OHIF Viewer in an academic publication, please cite
 
-### ❓ Questions
+> _LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer
+> Imaging Research and Clinical Trials_
+>
+> Trinity Urban, Erik Ziegler, Rob Lewis, Chris Hafey, Cheryl Sadow, Annick D.
+> Van den Abbeele and Gordon J. Harris
+>
+> _Cancer Research_, November 1 2017 (77) (21) e119-e122 DOI:
+> [10.1158/0008-5472.CAN-17-0334](https://www.doi.org/10.1158/0008-5472.CAN-17-0334)
 
-For questions related to using the library, please visit our support community,
-or file an issue on GitHub.
+**Note:** If you use or find this repository helpful, please take the time to
+star this repository on Github. This is an easy way for us to assess adoption
+and it can help us obtain future funding for the project.
 
-[Google Group][google-group]
+This work is supported primarily by the National Institutes of Health, National
+Cancer Institute, Informatics Technology for Cancer Research (ITCR) program,
+under a
+[grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460)](https://projectreporter.nih.gov/project_info_description.cfm?aid=8971104).
 
 ## License
 
 MIT © [OHIF](https://github.com/OHIF)
 
 <!--
-Links:
--->
+  Links
+  -->
 
 <!-- prettier-ignore-start -->
-<!-- ROW -->
+<!-- Badges -->
+[lerna-image]: https://img.shields.io/badge/maintained%20with-lerna-cc00ff.svg
+[lerna-url]: https://lerna.js.org/
+[netlify-image]: https://api.netlify.com/api/v1/badges/a5d369ab-18a6-41c3-bcde-83805205ac7f/deploy-status
+[netlify-url]: https://app.netlify.com/sites/ohif/deploys
 [all-contributors-image]: https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat-square
 [contributing-url]: https://github.com/OHIF/Viewers/blob/react/CONTRIBUTING.md
 [circleci-image]: https://circleci.com/gh/OHIF/Viewers.svg?style=svg
 [circleci-url]: https://circleci.com/gh/OHIF/Viewers
 [codecov-image]: https://codecov.io/gh/OHIF/Viewers/branch/react/graph/badge.svg
-[codecov-url]: https://codecov.io/gh/OHIF/Viewers
+[codecov-url]: https://codecov.io/gh/OHIF/Viewers/branch/react
 [prettier-image]: https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square
 [prettier-url]: https://github.com/prettier/prettier
 [semantic-image]: https://img.shields.io/badge/%20%20%F0%9F%93%A6%F0%9F%9A%80-semantic--release-e10079.svg
@@ -172,19 +239,31 @@ Links:
 [npm-url]: https://npmjs.org/package/ohif-viewer
 [npm-downloads-image]: https://img.shields.io/npm/dm/ohif-viewer.svg?style=flat-square
 [npm-version-image]: https://img.shields.io/npm/v/ohif-viewer.svg?style=flat-square
+[docker-pulls-img]: https://img.shields.io/docker/pulls/ohif/viewer.svg?style=flat-square
+[docker-image-url]: https://hub.docker.com/r/ohif/viewer
 [license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
 [license-url]: LICENSE
-<!-- DOCS -->
+<!-- Links -->
+[monorepo]: https://en.wikipedia.org/wiki/Monorepo
+[how-to-fork]: https://help.github.com/en/articles/fork-a-repo
+[how-to-clone]: https://help.github.com/en/articles/fork-a-repo#step-2-create-a-local-clone-of-your-fork
+[ohif-architecture]: https://docs.ohif.org/advanced/architecture.html
+[ohif-extensions]: https://docs.ohif.org/advanced/architecture.html
+[deployment-docs]: https://docs.ohif.org/deployment/
 [react-url]: https://reactjs.org/
 [pwa-url]: https://developers.google.com/web/progressive-web-apps/
 [ohif-viewer-url]: https://www.npmjs.com/package/ohif-viewer
-[configuration-url]: https://deploy-preview-398--ohif.netlify.com/essentials/configuration.html
-[extensions-url]: https://deploy-preview-398--ohif.netlify.com/advanced/extensions.html
-<!-- Misc. -->
-[react-viewer]: https://github.com/OHIF/Viewers/tree/react
-<!-- Issue Boilerplate -->
-[bugs]: https://github.com/OHIF/Viewers/labels/bug
-[requests-feature]: https://github.com/OHIF/Viewers/labels/enhancement
-[good-first-issue]: https://github.com/OHIF/Viewers/labels/good%20first%20issue
-[google-group]: https://groups.google.com/forum/#!forum/cornerstone-platform
+[configuration-url]: https://docs.ohif.org/essentials/configuration.html
+[extensions-url]: https://docs.ohif.org/advanced/extensions.html
+<!-- Platform -->
+[platform-core]: platform/core/README.md
+[platform-i18n]: platform/i18n/README.md
+[platform-ui]: platform/ui/README.md
+[platform-viewer]: platform/viewer/README.md
+<!-- Extensions -->
+[extension-cornerstone]: extensions/cornerstone/README.md
+[extension-dicom-html]: extensions/dicom-html/README.md
+[extension-dicom-microscopy]: extensions/dicom-microscopy/README.md
+[extension-dicom-pdf]: extensions/dicom-pdf/README.md
+[extension-vtk]: extensions/vtk/README.md
 <!-- prettier-ignore-end -->

aliases.config.js

@@ -0,0 +1,8 @@
+/* Used by webpack, babel and eslint */
+
+const path = require('path');
+
+module.exports = {
+  '@codinsky/parse-js': path.resolve(__dirname, 'packages/parse/src'),
+  '@codinsky/curate': path.resolve(__dirname, 'packages/curate/src'),
+};

babel.config.js

@@ -0,0 +1,57 @@
+const aliases = require('./aliases.config');
+const path = require('path');
+
+module.exports = {
+  // Also specified in .webpack/webpack.common.js
+  // https://github.com/zloirock/core-js/blob/master/docs/2019-03-19-core-js-3-babel-and-a-look-into-the-future.md
+  presets: [
+    [
+      '@babel/preset-env',
+      {
+        targets: {
+          ie: '11',
+        },
+        // https://babeljs.io/docs/en/babel-preset-env#usebuiltins
+        useBuiltIns: 'usage',
+        // https://babeljs.io/docs/en/babel-preset-env#corejs
+        corejs: 3,
+      },
+    ],
+    '@babel/preset-react',
+  ],
+  // https://babeljs.io/docs/en/options#babelrcroots
+  babelrcRoots: ['./platform/*', './extensions/*'],
+  plugins: [
+    'react-hot-loader/babel',
+    'inline-react-svg',
+    '@babel/plugin-proposal-class-properties',
+    '@babel/plugin-proposal-object-rest-spread',
+    '@babel/plugin-syntax-dynamic-import',
+    '@babel/plugin-transform-regenerator',
+    '@babel/plugin-transform-runtime',
+    [
+      'module-resolver',
+      {
+        // https://github.com/tleunen/babel-plugin-module-resolver/issues/338
+        // There seem to be a bug with module-resolver with a mono-repo setup:
+        // It doesn't resolve paths correctly when using root/alias combo, so we
+        // use this function instead.
+        resolvePath(sourcePath, currentFile, opts) {
+          // This will return undefined if aliases has no key for the sourcePath,
+          // in which case module-resolver will fallback on its default behaviour.
+          return aliases[sourcePath];
+        },
+      },
+    ],
+  ],
+  env: {
+    debug: {
+      sourceMaps: 'inline',
+      retainLines: true,
+    },
+    build: {
+      ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
+    },
+  },
+  // ignore: ["node_modules"]
+};

build-and-publish-docs.sh

@@ -0,0 +1,64 @@
+#!/bin/bash
+
+# Set directory to location of this script
+# https://stackoverflow.com/a/3355423/1867984
+cd "$(dirname "$0")"
+
+yarn -v
+node -v
+
+echo 'Installing Gitbook CLI'
+yarn global add gitbook-cli
+
+echo 'Running Gitbook installation'
+
+# Generate all version's GitBook output
+# For each directory in /docs ...
+cd ./../docs/
+for D in *; do
+    if [ -d "${D}" ]; then
+
+			echo "Generating output for: ${D}"
+			cd "${D}"
+
+			# Clear previous output, generate new
+			rm -rf _book
+			gitbook install
+			gitbook build
+
+			cd ..
+
+		fi
+done
+
+# Move CNAME File into `latest`
+cp CNAME ./latest/_book/CNAME
+
+# Create a history folder in our latest version's output
+mkdir ./latest/_book/history
+
+# Move each version's files to latest's history folder
+for D in *; do
+	if [ -d "${D}" ]; then
+		if [ "${D}" == v* ] ; then
+
+			echo "Moving ${D} to the latest version's history folder"
+
+			mkdir "./latest/_book/history/${D}"
+			cp -v -r "./${D}/_book"/* "./latest/_book/history/${D}"
+
+		fi
+	fi
+done
+
+# Back to repo root
+cd ..
+
+echo "Done generating documentation output"
+echo 'PUBLISHING'
+
+./node_modules/.bin/gh-pages \
+  --silent \
+  --repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
+  --message 'Autogenerated Message: [ci skip]' \
+	--dist docs/latest/_book

config-react/ccc.json

@@ -1,31 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "DCM4CHEE",
-        "wadoUriRoot": "https://cancer.crowds-cure.org/dcm4chee-arc/aets/DCM4CHEE/wado",
-        "qidoRoot": "https://cancer.crowds-cure.org/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "wadoRoot": "https://cancer.crowds-cure.org/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "qidoSupportsIncludeField": true,
-        "imageRendering": "wadors",
-        "thumbnailRendering": "wadors",
-        "requestOptions": {
-          "requestFromBrowser": true
-        }
-      }
-    ]
-  },
-  "oidc": [{
-    "authServerUrl": "https://cancer.crowds-cure.org/auth/realms/dcm4che",
-    "authRedirectUri": "http://localhost:5000/callback",
-    "clientId": "crowds-cure-cancer",
-    "postLogoutRedirectUri": "http://localhost:5000/logout-redirect.html",
-    "responseType": "id_token token",
-    "scope": "email profile openid",
-    "revokeAccessTokenOnSignout": true,
-    "extraQueryParams": {
-      "kc_idp_hint": "crowds-cure-cancer-auth0-oidc",
-      "client_id": "crowds-cure-cancer"
-    }
-  }]
-}

config-react/local_dcm4chee.json

@@ -1,19 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "DCM4CHEE",
-        "wadoUriRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado",
-        "qidoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "wadoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "qidoSupportsIncludeField": true,
-        "imageRendering": "wadors",
-        "thumbnailRendering": "wadors",
-        "requestOptions": {
-          "requestFromBrowser": true,
-          "auth": "admin:admin"
-        }
-      }
-    ]
-  }
-}

config-react/public_dicomweb.json

@@ -1,18 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "DCM4CHEE",
-        "wadoUriRoot": "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado",
-        "qidoRoot": "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "wadoRoot": "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "qidoSupportsIncludeField": true,
-        "imageRendering": "wadors",
-        "thumbnailRendering": "wadors",
-        "requestOptions": {
-          "requestFromBrowser": true
-        }
-      }
-    ]
-  }
-}

config/ClearCanvasDIMSE.json

@@ -1,38 +0,0 @@
-{
-  "servers": {
-    "dimse": [{
-      "name": "SPRITE PACS",
-      "wadoUriRoot": "http://localhost:1000/wado/CT",
-      "requestOptions": {
-        "logRequests": true,
-        "logResponses": true,
-        "logTiming": true
-      },
-      "peers": [
-        {
-          "host": "localhost",
-          "port": 108,
-          "aeTitle": "CT",
-          "default": true,
-          "supportsInstanceRetrievalByStudyUid": false
-        },
-        {
-          "host": "0.0.0.0",
-          "port": 104,
-          "aeTitle": "OHIFDCM",
-          "default": true,
-          "server": true
-        }
-      ]
-    }]
-  },
-  "defaultServiceType": "dimse",
-  "dropCollections": true,
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "studyListDateFilterNumDays": 1
-    }
-  }
-}

config/dcm4chee-dicomweb-clientonly.json

@@ -1,37 +0,0 @@
-{
-  "public": {
-    "clientOnly": true,
-    "ui": {
-      "studyListFunctionsEnabled": true,
-      "studyListDateFilterNumDays": 10000
-    },
-    "servers": {
-      "dicomWeb": [
-        {
-          "name": "Orthanc",
-          "wadoUriRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado",
-          "qidoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-          "wadoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-          "qidoSupportsIncludeField": true,
-          "imageRendering": "wadors",
-          "thumbnailRendering": "wadors",
-          "requestOptions": {
-            "requestFromBrowser": true,
-            "logRequests": true,
-            "logResponses": false,
-            "logTiming": true,
-            "auth": "admin:admin"
-          }
-        }]
-    },
-    "custom": {
-      "oidc": [{
-        "authServerUrl": "https://cancer.crowds-cure.org/auth/realms/dcm4che",
-        "authRedirectUri": "/studylist",
-        "postLogoutRedirectUri": "/",
-        "clientId": "ohif-viewer"
-      }]
-    },
-    "userAuthenticationRoutesEnabled": false
-  }
-}

config/dcm4cheeDICOMWeb.json

@@ -1,54 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "DCM4CHEE",
-        "wadoUriRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado",
-        "qidoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "wadoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "qidoSupportsIncludeField": false,
-        "imageRendering": "wadouri",
-        "thumbnailRendering": "wadors",
-        "requestOptions": {
-          "auth": "admin:admin",
-          "logRequests": true,
-          "logResponses": false,
-          "logTiming": true
-        }
-    }],
-    "dimse": [{
-      "name": "DCM4CHEE_DIMSE",
-      "wadoUriRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado",
-      "requestOptions": {
-        "auth": "admin:admin",
-        "logRequests": true,
-        "logResponses": false,
-        "logTiming": true
-      },
-      "peers": [
-        {
-          "host": "localhost",
-          "port": 4242,
-          "aeTitle": "DCM4CHEE",
-          "default": true,
-          "supportsInstanceRetrievalByStudyUid": false
-        },
-        {
-          "host": "0.0.0.0",
-          "port": 11112,
-          "aeTitle": "DCM4CHEE",
-          "default": true,
-          "server": true
-        }
-      ]
-    }]
-  },
-  "defaultServiceType": "dicomWeb",
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "studyListDateFilterNumDays": 1
-    }
-  }
-}

config/dcm4cheeDIMSE.json

@@ -1,54 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "DCM4CHEE",
-        "wadoUriRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado",
-        "qidoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "wadoRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs",
-        "qidoSupportsIncludeField": false,
-        "imageRendering": "wadouri",
-        "requestOptions": {
-          "auth": "admin:admin",
-          "logRequests": true,
-          "logResponses": false,
-          "logTiming": true
-        }
-    }],
-    "dimse": [{
-      "name": "DCM4CHEE_DIMSE",
-      "wadoUriRoot": "http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado",
-      "requestOptions": {
-        "auth": "admin:admin",
-        "logRequests": true,
-        "logResponses": false,
-        "logTiming": true
-      },
-      "peers": [
-        {
-          "host": "localhost",
-          "port": 4242,
-          "aeTitle": "DCM4CHEE",
-          "default": true,
-          "supportsInstanceRetrievalByStudyUid": false
-        },
-        {
-          "host": "0.0.0.0",
-          "port": 11112,
-          "aeTitle": "DCM4CHEE",
-          "default": true,
-          "server": true
-        }
-      ]
-    }]
-  },
-  "defaultServiceType": "dimse",
-  "dropCollections": true,
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "studyListDateFilterNumDays": 1
-    }
-  }
-}

config/medkenOrthanc.json

@@ -1,51 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "Medken Orthanc",
-        "wadoUriRoot": "http://dicom-orthanc.medken.com/wado",
-        "qidoRoot": "http://dicom-orthanc.medken.com/dicom-web",
-        "wadoRoot": "http://dicom-orthanc.medken.com/dicom-web",
-        "qidoSupportsIncludeField": false,
-        "imageRendering": "wadouri",
-        "requestOptions": {
-          "logRequests": false,
-          "logResponses": false,
-          "logTiming": true
-        }
-      }
-    ],
-    "dimse" : [{
-      "name": "ORTHANC_DIMSE",
-      "wadoUriRoot": "http://dicom-orthanc.medken.com/wado",
-      "peers": [
-        {
-          "host": "208.100.41.100",
-          "port": 4242,
-          "aeTitle": "MKORTHANC",
-          "default": true
-        },
-        {
-          "host": "0.0.0.0",
-          "port": 11119,
-          "aeTitle": "OHIFDCM",
-          "default": true,
-          "server": true
-        }
-      ]
-    }]
-  },
-  "defaultServiceType": "dimse",
-  "medkenpanel" : {
-    "prefix" : "admin"
-  },
-  "fhir" : {
-    "host" : "localhost",
-    "port" : 3937
-  },
-  "public": {
-    "ui": {
-      "studyListDateFilterNumDays": 1
-    }
-  }
-}

config/orthancDICOMWeb.json

@@ -1,37 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "Orthanc",
-        "wadoUriRoot": "http://localhost:8042/wado",
-        "qidoRoot": "http://localhost:8042/dicom-web",
-        "wadoRoot": "http://localhost:8042/dicom-web",
-        "qidoSupportsIncludeField": true,
-        "imageRendering": "wadouri",
-        "thumbnailRendering": "wadouri",
-        "requestOptions": {
-          "auth": "orthanc:orthanc",
-          "logRequests": true,
-          "logResponses": false,
-          "logTiming": true
-        }
-      }
-    ]
-  },
-  "defaultServiceType": "dicomWeb",
-  "dropCollections": true,
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "leftSidebarOpen": false,
-        "displaySetNavigationLoopOverSeries": false,
-        "displaySetNavigationMultipleViewports": true,
-        "autoPositionMeasurementsTextCallOuts": "TRLB",
-        "studyListDateFilterNumDays": 1
-    }
-  },
-  "proxy": {
-    "enabled": true
-  }
-}

config/orthancDIMSE.json

@@ -1,43 +0,0 @@
-{
-  "servers": {
-    "dimse": [{
-      "name": "ORTHANC_DIMSE",
-      "wadoUriRoot": "http://localhost:8042/wado",
-      "requestOptions": {
-        "auth": "orthanc:orthanc",
-        "logRequests": true,
-        "logResponses": false,
-        "logTiming": true
-      },
-      "peers": [
-        {
-          "host": "localhost",
-          "port": 4242,
-          "aeTitle": "ORTHANC",
-          "default": true,
-          "server": false
-        },
-        {
-          "host": "0.0.0.0",
-          "port": 11112,
-          "aeTitle": "OHIFDCM",
-          "default": true,
-          "server": true
-        }
-      ]
-    }]
-  },
-  "defaultServiceType": "dimse",
-  "dropCollections": true,
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "leftSidebarOpen": false,
-        "displaySetNavigationLoopOverSeries": false,
-        "displaySetNavigationMultipleViewports": true,
-        "autoPositionMeasurementsTextCallOuts": "TRLB",
-        "studyListDateFilterNumDays": 10000
-    }
-  }
-}

config/osirixDIMSE.json

@@ -1,42 +0,0 @@
-{
-  "servers": {
-    "dimse": [{
-      "name": "OSIRIX_DIMSE",
-      "wadoUriRoot": "http://localhost:3333/wado",
-      "requestOptions": {
-        "logRequests": true,
-        "logResponses": false,
-        "logTiming": true
-      },
-      "peers": [
-        {
-          "host": "localhost",
-          "port": 11112,
-          "aeTitle": "OSIRIX",
-          "default": true,
-          "server": false
-        },
-        {
-          "host": "0.0.0.0",
-          "port": 4242,
-          "aeTitle": "OHIFDCM",
-          "default": true,
-          "server": true
-        }
-      ]
-    }]
-  },
-  "defaultServiceType": "dimse",
-  "dropCollections": true,
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "leftSidebarOpen": false,
-        "displaySetNavigationLoopOverSeries": false,
-        "displaySetNavigationMultipleViewports": true,
-        "autoPositionMeasurementsTextCallOuts": "TRLB",
-        "studyListDateFilterNumDays": 1
-    }
-  }
-}

config/publicOrthancDICOMWeb.json

@@ -1,37 +0,0 @@
-{
-  "servers": {
-    "dicomWeb": [
-      {
-        "name": "Orthanc",
-        "wadoUriRoot": "http://dicomweb.ohif.org/wado",
-        "qidoRoot": "http://dicomweb.ohif.org/dicom-web",
-        "wadoRoot": "http://dicomweb.ohif.org/dicom-web",
-        "qidoSupportsIncludeField": false,
-        "imageRendering": "wadouri",
-        "thumbnailRendering": "wadouri",
-        "requestOptions": {
-          "auth": "orthanc:orthanc",
-          "logRequests": true,
-          "logResponses": false,
-          "logTiming": true
-        }
-      }
-    ]
-  },
-  "defaultServiceType": "dicomWeb",
-  "dropCollections": true,
-  "public": {
-    "verifyEmail": false,
-    "ui": {
-        "studyListFunctionsEnabled": true,
-        "leftSidebarOpen": false,
-        "displaySetNavigationLoopOverSeries": false,
-        "displaySetNavigationMultipleViewports": true,
-        "autoPositionMeasurementsTextCallOuts": "TRLB",
-        "studyListDateFilterNumDays": 1
-    }
-  },
-  "proxy": {
-    "enabled": true
-  }
-}

dockerfile

@@ -1,29 +0,0 @@
-# Stage 1: Build the application
-# docker build -t ohif/viewer:latest .
-FROM node:11.2.0-slim as builder
-
-RUN apt-get update && apt-get install -y git yarn
-RUN mkdir /usr/src/app
-
-WORKDIR /usr/src/app
-
-ENV PATH /usr/src/app/node_modules/.bin:$PATH
-COPY package.json /usr/src/app/package.json
-COPY yarn.lock /usr/src/app/yarn.lock
-
-ADD . /usr/src/app/
-RUN yarn install
-RUN yarn run build
-WORKDIR example
-RUN yarn install
-RUN yarn run prepare
-ADD example /usr/src/app/build
-
-# Stage 2: Bundle the built application into a Docker container
-# which runs Nginx using Alpine Linux
-FROM nginx:1.15.5-alpine
-RUN rm -rf /etc/nginx/conf.d
-COPY conf /etc/nginx
-COPY --from=builder /usr/src/app/build /usr/share/nginx/html
-EXPOSE 80
-CMD ["nginx", "-g", "daemon off;"]

dockersupport/app.json

@@ -1,41 +0,0 @@
-{
-  "apps" : [{
-    "name"        : "ohif-viewer",
-    "script"      : "main.js",
-    "watch"       : true,
-    "merge_logs"  : true,
-    "cwd"         : "/app/bundle/",
-    "env": {
-    	"METEOR_SETTINGS": {
-		  "servers": {
-		    "dicomWeb": [
-					{
-		        "name": "Orthanc",
-		        "wadoUriRoot": "http://pacsIP:8042/wado",
-		        "qidoRoot": "http://pacsIP:8042/dicom-web",
-		        "wadoRoot": "http://pacsIP:8042/dicom-web",
-		        "qidoSupportsIncludeField": false,
-		        "imageRendering": "wadouri",
-		        "thumbnailRendering": "wadouri",
-		        "requestOptions": {
-		          "auth": "orthanc:orthanc",
-		          "logRequests": true,
-		          "logResponses": false,
-		          "logTiming": true
-		        }
-		      }
-		    ]
-		  },
-		  "defaultServiceType": "dicomWeb",
-		  "public": {
-				"ui": {
-					"studyListDateFilterNumDays": 1
-				}
-			},
-		  "proxy": {
-		    "enabled": true
-		  }
-		}
-    }
-  }]
-}

dockersupport/settings.json

@@ -1,30 +0,0 @@
-{
-"servers": {
-	"dicomWeb": [
-		{
-	    "name": "Orthanc",
-	    "wadoUriRoot": "http://pacsIP:8042/wado",
-	    "qidoRoot": "http://pacsIP:8042/dicom-web",
-	    "wadoRoot": "http://pacsIP:8042/dicom-web",
-	    "qidoSupportsIncludeField": false,
-	    "imageRendering": "wadouri",
-	    "thumbnailRendering": "wadouri",
-	    "requestOptions": {
-	      "auth": "orthanc:orthanc",
-	      "logRequests": true,
-	      "logResponses": false,
-	      "logTiming": true
-	    }
-	  }
-	]
-	},
-	"defaultServiceType": "dicomWeb",
-	"public": {
-		"ui": {
-			"studyListDateFilterNumDays": 1
-		}
-	},
-	"proxy": {
-		"enabled": true
-	}
-}

docs/latest/I-want-to/script-tag.md

@@ -1,9 +0,0 @@
-# Embed the viewer using a script tag
-
-<iframe src="https://codesandbox.io/embed/lrjoo3znxm?fontsize=14" style="width:100%; height:600px; border:0; border-radius: 4px; overflow:hidden;" sandbox="allow-modals allow-forms allow-popups allow-scripts allow-same-origin"></iframe>
-
-## Important notes:
-
-- You must correctly specify `rootUrl` **and** the HTML `<base>` tag.
-- If your application runs in a subdirectory (e.g. /viewer/), this must be specified in `routerBasename`
-- Currently, the WADO Image Loader Codecs and Web Worker source code must also be server at the ROOT URL

docs/latest/README.md

@@ -1,11 +1,54 @@
-##### Looking for your Deploy Preview? - <a onclick="function redirect() { window.location.href='/demo/'; } redirect();">Deploy Preview for Viewer</a>
+<div class='row'>
+	<div class='column' style='text-align: right; padding: 0 20px'>
+		<strong>Looking for a Deploy Preview?</strong>
+		<a onclick="function redirect() { window.location.href='/demo/'; } redirect();">Deploy Preview for Viewer</a>
+	</div>
+	<div class='column' style='text-align: left; padding: 0 20px'>
+		<a href="https://www.netlify.com">
+		  <img src="https://www.netlify.com/img/global/badges/netlify-color-bg.svg"/>
+		</a>
+	</div>
+</div>
 
-# Introduction - test
+> ATTENTION! You are looking at the docs for the `React` version of the OHIF
+> Viewer. If you're looking for the `Meteor` version's documentation (now
+> deprecated), select it's version from the dropdown box in the top left corner
+> of this page.
 
-The [Open Health Imaging Foundation](https://www.ohif.org) is developing an open source framework for constructing web-based medical imaging applications.
+# Introduction
 
-## The **OHIF Viewer**: A general purpose DICOM Viewer ([demo](http://viewer.ohif.org/))
+The [Open Health Imaging Foundation][ohif-org] (OHIF) Viewer is an open source,
+web-based, medical imaging viewer. It can be configured to connect to Image
+Archives that support [DicomWeb][dicom-web], and offers support for mapping to
+proprietary API formats. OHIF maintained extensions add support for viewing,
+annotating, and reporting on DICOM images in 2D (slices) and 3D (volumes).
 
 ![OHIF Viewer Screenshot](../assets/img/viewer.png)
 
-The Open Health Imaging Foundation intends to provide a simple general purpose DICOM Viewer which can be easily extended for specific uses.
+<center><i>The <strong>OHIF Viewer</strong>: A general purpose DICOM Viewer (<a href="http://viewer.ohif.org/">Live Demo</a>)</center>
+
+The Open Health Imaging Foundation intends to provide a simple general purpose
+DICOM Viewer which can be easily extended for specific uses. If you find
+yourself unable to extend the viewer for your purposes, please reach out via our
+[GitHub issues][gh-issues]. We are actively seeking feedback on ways to improve
+our integration and extension points.
+
+## Where to Next?
+
+Check out these helpful links:
+
+- Ready to dive into some code? Check out our
+  [Getting Started Guide](./essentials/getting-started.md).
+- We're an active, vibrant community.
+  [Learn how you can be more involved.](./contributing.md)
+- Feeling lost? Read our [help page](./help.md).
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[ohif-org]: https://www.ohif.org
+[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
+[gh-issues]: https://github.com/OHIF/Viewers/issues
+<!-- prettier-ignore-end -->

docs/latest/SUMMARY.md

@@ -2,13 +2,16 @@
 
 - Essentials
   - [Getting Started](essentials/getting-started.md)
+  - [Installation](essentials/installation.md)
+  - [Data Source](essentials/data-source.md)
   - [Configuration](essentials/configuration.md)
+  - [Themeing](essentials/themeing.md)
+  - [Translating](essentials/translating.md)
   - [Troubleshooting](essentials/troubleshooting.md)
-- [Architecture](architecture/index.md)
-  - Overview
-- Deployment
+- [Scope of Project](essentials/scope-of-project.md)
 
 ---
+
 - [Advanced](advanced/index.md)
 - [Architecture](advanced/architecture.md)
   - [Overview](advanced/architecture.md#overview)
@@ -22,18 +25,27 @@
   - [Modules](advanced/extensions.md#modules)
   - [Registering](advanced/extensions.md#registering-extensions)
   - [OHIF Maintained](advanced/extensions.md#ohif-maintained-extensions)
+- [Custom Tools](advanced/custom-tools.md)
 
-- Connecting to Image Archives
-  - [DICOM Web](connecting-to-image-archives/dicomweb.md)
+---
 
-----
-- I Want To
-  - [Embed the viewer using a script tag](I-want-to/script-tag.md)
+- [Deployment](deployment/index.md)
+  - [Embedded](deployment/index.md#embedded-viewer)
+  - [Stand-alone](deployment/index.md#stand-alone-viewer)
+  - [Data](deployment/index.md#data)
+- Recipes
+  - Script Include
+    - [Embedding the Viewer](deployment/recipes/embedded-viewer.md)
+  - Stand-Alone
+    - [Build for Production](deployment/recipes/build-for-production.md)
+    - [Static](deployment/recipes/static-assets.md)
+    - [Nginx + Image Archive](deployment/recipes/nginx--image-archive.md)
+    - [User Account Control](deployment/recipes/user-account-control.md)
+    - [Google Cloud Healthcare](connecting-to-image-archives/google-cloud-healthcare.md)
 
+---
 
-----
-- FAQ
-  - [General](faq/general.md)
-
-----
 - [Contributing](contributing.md)
+- [FAQ](frequently-asked-questions.md)
+- [Roadmap](roadmap.md)
+- [Help](help.md)

docs/latest/advanced/_maintained-extensions-table.md

@@ -10,7 +10,7 @@
         <!-- CORNERSTONE.js -->
         <tr>
             <td>
-                <a href="https://www.npmjs.com/package/ohif-cornerstone-extension">
+                <a href="https://www.npmjs.com/package/@ohif/extension-cornerstone">
                     Cornerstone
                 </a>
             </td>
@@ -22,7 +22,7 @@
         <!-- VTK.js -->
         <tr>
             <td>
-                <a href="https://www.npmjs.com/package/ohif-vtk-extension">
+                <a href="https://www.npmjs.com/package/@ohif/extension-vtk">
                     VTK.js
                 </a>
             </td>
@@ -33,30 +33,30 @@
         </tr>
         <tr>
             <td>
-                <a href="">HTML</a>
+                <a href="https://www.npmjs.com/package/@ohif/extension-dicom-html">DICOM HTML</a>
             </td>
             <td>
-                Renders text and HTML content for <a href="https://github.com/OHIF/Viewers/blob/react/extensions/ohif-dicom-html-extension/src/OHIFDicomHtmlSopClassHandler.js#L7-L15">specific SopClassUIDs</a>.
+                Renders text and HTML content for <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-html/src/OHIFDicomHtmlSopClassHandler.js#L4-L12">specific SopClassUIDs</a>.
             </td>
             <td>Viewport, SopClassHandler</td>
         </tr>
         <tr>
             <td>
-                <a href="https://www.npmjs.com/package/ohif-dicom-pdf-extension">PDF</a>
+                <a href="https://www.npmjs.com/package/@ohif/extension-dicom-pdf">DICOM PDF</a>
             </td>
             <td>
-                Renders PDFs for a <a href="https://github.com/OHIF/Viewers/blob/react/extensions/ohif-dicom-pdf-extension/src/OHIFDicomPDFSopClassHandler.js#L8">specific SopClassUID</a>.
+                Renders PDFs for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-pdf/src/OHIFDicomPDFSopClassHandler.js#L4-L6">specific SopClassUID</a>.
             </td>
             <td>Viewport, SopClassHandler</td>
         </tr>
         <tr>
             <td>
-                <a href="https://www.npmjs.com/package/ohif-dicom-microscopy-extension">Microscopy</a>
+                <a href="https://www.npmjs.com/package/@ohif/extension-dicom-microscopy">DICOM Microscopy</a>
             </td>
             <td>
-                Renders Microscopy images for a <a href="https://github.com/OHIF/Viewers/blob/react/extensions/ohif-dicom-microscopy-extension/src/DicomMicroscopySopClassHandler.js#L6">specific SopClassUID</a>.
+                Renders Microscopy images for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-microscopy/src/DicomMicroscopySopClassHandler.js#L5-L7">specific SopClassUID</a>.
             </td>
             <td>Viewport, SopClassHandler</td>
         </tr>
     </tbody>
-</table>
+</table>

docs/latest/advanced/architecture.md

@@ -1,17 +1,31 @@
 # Architecture
 
-Looking to extend your instance of the OHIF Viewer? Want learn how to reuse _a portion_ of the Viewer in your own application? Or maybe you want to get involved and draft or suggest a new feature? Regardless, you're in the right place!
+Looking to extend your instance of the OHIF Viewer? Want learn how to reuse _a
+portion_ of the Viewer in your own application? Or maybe you want to get
+involved and draft or suggest a new feature? Regardless, you're in the right
+place!
 
-The OHIF Viewer aims to be decoupled, configurable, and extensible; while this allows our code to be used in more ways, it also increases complexity. Below, we aim to demistify that complexity by providing insight into how our Viewer is architected, and the role each of it's dependent libraries plays.
+The OHIF Viewer aims to be decoupled, configurable, and extensible; while this
+allows our code to be used in more ways, it also increases complexity. Below, we
+aim to demistify that complexity by providing insight into how our Viewer is
+architected, and the role each of it's dependent libraries plays.
 
 ## Overview
 
-The [`OHIF/Viewers`](https://github.com/OHIF/Viewers/tree/react) repository contains the source code for the OHIF Medical Imaging Viewer. It is effectively a React [progressive web app](https://developers.google.com/web/progressive-web-apps/) (PWA) that combines the business logic housed in [`OHIF/ohif-core`](https://github.com/OHIF/ohif-core) and the components in our React Component library [`OHIF/react-viewerbase`](https://github.com/OHIF/react-viewerbase). It provides customization for common use cases through [configuration](../essentials/configuration.md) and for adding functionality via [extensions](./extensions.md).
-
+The [`OHIF/Viewers`][viewers-project] project contains the source code for the
+OHIF Medical Imaging Viewer. It is effectively a React [progressive web
+app][pwa] (PWA) that combines the business logic housed in
+[`OHIF/ohif-core`][core] and the components in our React Component library
+[`OHIF/react-viewerbase`][component-library]. It provides customization for
+common use cases through [configuration][configuration] and for adding
+functionality via [extensions][extensions].
 
 ### Business Logic
 
-Our goal is to maintain the majority of our business logic in [`OHIF/ohif-core`](https://github.com/OHIF/ohif-core). `ohif-core` offers pre-packaged solutions for features common to Web-based medical imaging viewers. For example:
+Our goal is to maintain the majority of our business logic in
+[`OHIF/ohif-core`](https://github.com/OHIF/ohif-core). `ohif-core` offers
+pre-packaged solutions for features common to Web-based medical imaging viewers.
+For example:
 
 - Hotkeys
 - DICOM Web
@@ -22,33 +36,46 @@ Our goal is to maintain the majority of our business logic in [`OHIF/ohif-core`]
 - [And many others](https://github.com/OHIF/ohif-core/blob/master/src/index.js#L49-L69)
 
 It does this while remaining decoupled from any particular view library or
-rendering logic. While we use it to power our React Viewer, it can be used with Vue, React, Vanilla JS, or any number of other frameworks.
-
+rendering logic. While we use it to power our React Viewer, it can be used with
+Vue, React, Vanilla JS, or any number of other frameworks.
 
 ### React Component Library
 
-[`OHIF/react-viewerbase`](https://github.com/OHIF/react-viewerbase) is a React Component library that contains the reusable components that power the OHIF Viewer. It allows us to build, compose, and test components in isolation; easing the development process by reducing the need to stand-up a local PACS with test case data.
+[`OHIF/react-viewerbase`](https://github.com/OHIF/react-viewerbase) is a React
+Component library that contains the reusable components that power the OHIF
+Viewer. It allows us to build, compose, and test components in isolation; easing
+the development process by reducing the need to stand-up a local PACS with test
+case data.
 
 [Check out our component library!](https://react.ohif.org/)
 
-
 ### Misc. Extensions
 
-Want to add custom logic or UI Components to the OHIF Viewer, but don't want to maintain a fork? We expose common integration points via [extensions](./extensions.md) to make that possible. For a list of extensions maintained by OHIF, [check out this helpful table](./extensions.html#ohif-maintained-extensions).
+Want to add custom logic or UI Components to the OHIF Viewer, but don't want to
+maintain a fork? We expose common integration points via
+[extensions](./extensions.md) to make that possible. For a list of extensions
+maintained by OHIF,
+[check out this helpful table](./extensions.html#ohif-maintained-extensions).
 
-
-If you find yourself thinking "I wish the Viewer could do X", and you can't accomplish it with an extension today, create a GitHub issue! We're actively looking for ways to improve our extensibility ^_^
+If you find yourself thinking "I wish the Viewer could do X", and you can't
+accomplish it with an extension today, create a GitHub issue! We're actively
+looking for ways to improve our extensibility ^\_^
 
 [Click here to read more about extensions!](./extensions.md)
 
 ### Diagram
 
-This diagram is a conceptual illustration of how the Viewer is architected. 
+This diagram is a conceptual illustration of how the Viewer is architected.
 
-0. (optional) `extensions` can be registered with `ohif-core`'s extension manager
-1. `ohif-core` provides bussiness logic and a way for `viewer` to access registered extensions
-2. The `viewer` composes and provides data to components from our component library (`react-viewerbase`)
-3. The `viewer` can be built and served as a stand-alone PWA, or as an embeddable package ([`ohif-viewer`](https://www.npmjs.com/package/ohif-viewer))
+1. (optional) `extensions` can be registered with `ohif-core`'s extension
+   manager
+2. `ohif-core` provides bussiness logic and a way for `viewer` to access
+   registered extensions
+3. The `viewer` composes and provides data to components from our component
+   library (`react-viewerbase`)
+4. The `viewer` can be built and served as a stand-alone PWA, or as an
+   embeddable package
+   ([`ohif-viewer`](https://www.npmjs.com/package/ohif-viewer))
 
 ![Architecture Diagram](../assets/img/architecture-diagram.png)
 
@@ -56,10 +83,27 @@ This diagram is a conceptual illustration of how the Viewer is architected.
 
 ## Common Questions
 
-> When should I use the packaged source `ohif-viewer` versus building a PWA from the source?
+> When should I use the packaged source `ohif-viewer` versus building a PWA from
+> the source?
 
 ...
 
 > Can I create my own Viewer using Vue.js or Angular.js?
 
-You can, but you will not be able to leverage as much of the existing code and components. `ohif-core` could still be used for business logic, and to provide a model for extensions. `react-viewerbase` would then become a guide for the components you would need to recreate.
+You can, but you will not be able to leverage as much of the existing code and
+components. `ohif-core` could still be used for business logic, and to provide a
+model for extensions. `react-viewerbase` would then become a guide for the
+components you would need to recreate.
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[viewers-project]: https://github.com/OHIF/Viewers
+[pwa]: https://developers.google.com/web/progressive-web-apps/
+[core]: https://github.com/OHIF/ohif-core
+[component-library]: https://github.com/OHIF/react-viewerbase
+[configuration]: ../essentials/configuration.md
+[extensions]: ./extensions.m
+<!-- prettier-ignore-end -->

docs/latest/advanced/custom-tools.md

@@ -0,0 +1,8 @@
+# Tool Management
+
+This is not yet exposed in an easy/convenient way. Most tools are currently
+added by creating new Viewport, Toolbar, and SOPInstanceHandler extension
+modules. You can read more about that approach in [extensions](./extensions.md).
+
+In the near future, we intend to improve the extensibility of tools for existing
+Viewports (like our Cornerstone.js and VTK.js viewports).

docs/latest/advanced/extensions.md

@@ -1,46 +1,134 @@
 # Extensions
 
-Extensions add new functionality to the viewer by registering one or more modules. They go one step further than configuration in that they allow us to inject custom React components, so long as they adhere to the module's interface. This can be something as simple as adding a new button to the toolbar, or as complex as a new viewport capable of rendering volumes in 3D.
+Extensions add new functionality to the viewer by registering one or more
+modules. They go one step further than configuration in that they allow us to
+inject custom React components, so long as they adhere to the module's
+interface. This can be something as simple as adding a new button to the
+toolbar, or as complex as a new viewport capable of rendering volumes in 3D.
+
+- [Overview](#overview)
+- [Modules](#modules)
+  - [Commands](#commands)
+  - [Hotkeys](#hotkeys)
+  - [Toolbar](#toolbar)
+  - [Panel](#panel)
+  - [Viewport](#viewport)
+  - [SOP Class Handler](#sopclasshandler)
 
 ## Overview
 
-At a glance, an extension is a class or object that has a `getExtensionId()` method, and one or more "module" methods. You can find an abbreviated extension below, or [view the source](https://github.com/OHIF/Viewers/blob/react/extensions/ohif-cornerstone-extension/src/OHIFCornerstoneExtension.js#L32-L65) of our `cornerstone` viewport extension.
+At a glance, an extension is a javascript object that has an `id` property, and
+one or more "module" methods. You can find an abbreviated extension below, or
+[view the source][example-ext-src] of our example extension.
 
 ```js
-class myCustomExtension {
+export default {
+    /**
+     * Only required property. Should be a unique value across all extensions.
+     */
+    id: 'example-extension',
 
-    /** Required */
-    getExtensionId: () => 'my-extension-id';
+    /**
+     * Registers one or more named commands scoped to a context. Commands are
+     * the primary means for...
+     */
+    getCommandsModule() {
+        return {
+            defaultContext: 'VIEWER'
+            actions: { ... },
+            definitions: { ... }
+        }
+    },
 
-    /** React component that receives props from ConnectLayoutManager
-     *  If more than one viewport module is registered, SopClassHandler
-     *  is used to help determine which component is used */
-    getViewportModule: () => reactViewportComponent;
+    /**
+     * Allows you to provide toolbar definitions that will be merged with any
+     * existing application toolbar configuration. Used to determine which
+     * buttons should be visible when, their order, what happens when they're
+     * clicked, etc.
+     */
+    getToolbarModule() {
+        return {
+            definitions: [ ... ],
+            defaultContext: 'ACTIVE_VIEWPORT::CORNERSTONE'
+        }
+    }
 
-    /** React component that adds buttons/behavior to the viewer Toolbar */
-    getToolbarModule: () => reactToolbarComponent;
+    /**
+     * Not yet implemented
+     */
+    getPanelModule: () => null,
+
+    /**
+     * Registers a ReactComponent that should be used to render data in a
+     * Viewport. The first registered viewport is our "default viewport". If
+     * more than one viewport is registered, we use `SopClassHandlers` to
+     * determine which viewport should be used.
+    */
+    getViewportModule: () => reactViewportComponent,
 
     /** Provides a whitelist of SOPClassUIDs the viewport is capable of rendering.
      *  Can modify default behavior for methods like `getDisplaySetFromSeries` */
     getSopClassHandler: () => {
         id: 'some-other-unique-id',
-        type: PLUGIN_TYPES.SOP_CLASS_HANDLER,
-        sopClassUids: ['string'],
-        getDisplaySetFromSeries: (series, study, dicomWebClient, authorizationHeaders) => ...
-    };
-
-    // Not yet used
-    getPanelModule: () => null;
+        sopClassUids: [ ... ],
+        getDisplaySetFromSeries: (series, study, dicomWebClient, authorizationHeaders) => { ... }
+    },
 }
 ```
 
 ### Modules
 
-There are a few different kinds of modules. Each kind of module allows us to extend the viewer in a different way, and provides a consistent API for us to do so. You can find a full list of the [different types of modules `in ohif-core`](https://github.com/OHIF/ohif-core/blob/43c08a29eff3fb646a0e83a03a236ddd84f4a6e8/src/plugins.js#L1-L6). Information on each type of module, it's API, and how we determine when/where it should be used is included below:
+There are a few different module types. Each module type allows us to extend the
+viewer in a different way, and provides a consistent API for us to do so. You
+can find a full list of the different types of modules
+[`in ohif-core`][module-types]. Information on each type of module, it's API,
+and how we determine when/where it should be used is included below.
+
+> NOTE: Modifying the extensions/modules registered to the OHIF Viewer currently
+> requires us to import and pass extensions to the ExtensionManager in
+> `src/App.js`, then rebuild the application. Long-term, we intend to make it
+> possible to accomplish this without a build step.
+
+#### Commands
+
+The Commands Module allows us to register one or more commands scoped to
+specific contexts. Commands can be run by [hotkeys][#], [toolbar buttons][#],
+and any registered custom react component (like a [viewport][#] or [panel][#]).
+Here is a simple example commands module:
+
+```js
+{
+    getCommandsModule() {
+        return {
+            actions: {
+                speak: ({ viewports, words }) => {
+                    console.log(viewports, words);
+                },
+            },
+            definitions: {
+                rotateViewportCW: {
+                    commandFn: actions.rotateViewport,
+                    storeContexts: ['viewports'],
+                    options: { rotation: 90 }
+                },
+                rotateViewportCCW: {
+                    commandFn: actions.rotateViewport,
+                    storeContexts: ['viewports'],
+                    options: { rotation: -90 },
+                    context: 'ACTIVE_VIEWER::CORNERSTONE'
+                },
+            },
+            defaultContext: 'VIEWER'
+        }
+    }
+}
+```
 
 #### Viewport
 
-An extension can register a Viewport Module by providing a `getViewportModule()` method that returns a React Component. The React component will receive the following props:
+An extension can register a Viewport Module by providing a `getViewportModule()`
+method that returns a React Component. The React component will receive the
+following props:
 
 ```js
 children: PropTypes.arrayOf(PropTypes.element)
@@ -52,7 +140,8 @@ children: PropTypes.node,
 customProps: PropTypes.object
 ```
 
-Viewport components are managed by the `LayoutManager`. Which Viewport component is used depends on:
+Viewport components are managed by the `LayoutManager`. Which Viewport component
+is used depends on:
 
 - The Layout Configuration
 - Registered SopClassHandlers
@@ -62,11 +151,15 @@ Viewport components are managed by the `LayoutManager`. Which Viewport component
 
 <center><i>An example of three Viewports</i></center>
 
-For a complete example implementation, [check out the OHIFCornerstoneViewport](https://github.com/OHIF/Viewers/blob/react/extensions/ohif-cornerstone-extension/src/OHIFCornerstoneViewport.js).
+For a complete example implementation,
+[check out the OHIFCornerstoneViewport](https://github.com/OHIF/Viewers/blob/master/extensions/cornerstone/src/OHIFCornerstoneViewport.js).
 
 #### Toolbar
 
-An extension can register a Toolbar Module by providing a `getToolbarModule()` method that returns a React Component. The component does not receive any props. If you want to modify or react to state, you will need to connect to the redux store.
+An extension can register a Toolbar Module by providing a `getToolbarModule()`
+method that returns a React Component. The component does not receive any props.
+If you want to modify or react to state, you will need to connect to the redux
+store.
 
 ![Toolbar Extension](../assets/img/extensions-toolbar.gif)
 
@@ -74,7 +167,8 @@ An extension can register a Toolbar Module by providing a `getToolbarModule()` m
 
 Toolbar components are rendered in the `ToolbarRow` component.
 
-For a complete example implementation, [check out the OHIFCornerstoneViewport's Toolbar Module](https://github.com/OHIF/Viewers/blob/react/extensions/ohif-cornerstone-extension/src/ToolbarModule.js).
+For a complete example implementation,
+[check out the OHIFCornerstoneViewport's Toolbar Module](https://github.com/OHIF/Viewers/blob/master/extensions/cornerstone/src/toolbarModule.js).
 
 #### SopClassHandler
 
@@ -84,18 +178,28 @@ For a complete example implementation, [check out the OHIFCornerstoneViewport's
 
 > The panel module is not yet in use.
 
+#### Hotkeys
+
+...
+
 ### Registering Extensions
 
-Extensions are registered for the application at startup. The `ExtensionManager`, exposed by `ohif-core`, registers a list of extensions with our application's store. Each module provided by the extension becomes available via `state.plugins.availablePlugins`, and consists of three parts: id, type ([PLUGIN_TYPE](https://github.com/OHIF/ohif-core/blob/43c08a29eff3fb646a0e83a03a236ddd84f4a6e8/src/plugins.js#L1-L6)), and the return value of the module method.
+Extensions are registered for the application at startup. The
+`ExtensionManager`, exposed by `ohif-core`, registers a list of extensions with
+our application's store. Each module provided by the extension becomes available
+via `state.plugins.availablePlugins`, and consists of three parts: id, type
+([PLUGIN_TYPE](https://github.com/OHIF/ohif-core/blob/43c08a29eff3fb646a0e83a03a236ddd84f4a6e8/src/plugins.js#L1-L6)),
+and the return value of the module method.
 
-In a future version, we will likely expose a way to provide the extensions you would like included at startup.
+In a future version, we will likely expose a way to provide the extensions you
+would like included at startup.
 
 _app.js_
 
 ```js
-import { createStore, combineReducers } from "redux";
-import OHIF from "ohif-core";
-import OHIFCornerstoneExtension from "ohif-cornerstone-extension";
+import { createStore, combineReducers } from 'redux';
+import OHIF from '@ohif/core';
+import OHIFCornerstoneExtension from 'ohif-cornerstone-extension';
 
 const combined = combineReducers(OHIF.redux.reducers);
 const store = createStore(combined);
@@ -108,6 +212,19 @@ ExtensionManager.registerExtensions(store, extensions);
 
 ## OHIF Maintained Extensions
 
-A small number of powerful extensions for popular use cases are maintained by OHIF. They're co-located in the [`OHIF/Viewers`](https://github.com/OHIF/Viewers/tree/react/) repository, in the top level [`extensions/`](https://github.com/OHIF/Viewers/tree/react/extensions) directory.
+A small number of powerful extensions for popular use cases are maintained by
+OHIF. They're co-located in the
+[`OHIF/Viewers`](https://github.com/OHIF/Viewers) repository, in the top level
+[`extensions/`](https://github.com/OHIF/Viewers/tree/master/extensions)
+directory.
 
 {% include "./_maintained-extensions-table.md" %}
+
+<!--
+    Links
+-->
+
+<!-- prettier-ignore-start -->
+[example-ext-src]: https://github.com/OHIF/Viewers/tree/master/extensions/_example/src
+[module-types]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/extensions/MODULE_TYPES.js
+<!-- prettier-ignore-end -->

docs/latest/advanced/monorepos-a-crash-courese.md

@@ -0,0 +1,23 @@
+# MonoRepos: A Crash Course
+
+- [Lerna][lerna]
+
+Solutions:
+
+## Semantic-Release
+
+- [Semantic-Release](https://github.com/semantic-release/semantic-release/issues/193#issuecomment-462063871)
+- [Multi-semantic-release](https://github.com/dhoulb/multi-semantic-release)
+- [semantic-release-monorepo](https://github.com/Updater/semantic-release-monorepo)
+
+# Netlify
+
+- https://community.netlify.com/t/best-practices-for-deploying-sites-from-monorepos/818
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[lerna]: https://github.com/lerna/lerna
+<!-- prettier-ignore-end -->

docs/latest/assets/designs/cloud.svg

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+        id="path4139" 
+        class="ColorScheme-Text"/>
+</svg>

docs/latest/assets/designs/npm-logo-red.svg

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+<svg version="1.1" id="npm" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px"
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+	 M0,200h100V50h50v150h50V0H0V200z"/>
+</svg>

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docs/latest/assets/img/canny-logo.svg

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docs/latest/assets/img/locizeSponsor.svg

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+    </g>
+</svg>

docs/latest/connecting-to-image-archives/dcm4chee-with-docker.md

@@ -1,41 +0,0 @@
-# DCM4CHEE with Docker
-
-1. Install Docker (https://www.docker.com/)
-2. Follow the DCM4CHEE Guidelines for Running on Docker.
-
-    The easiest path is to use Docker-Compose which will start and stop multiple containers for you. There are excellent instructions provided by the DCM4CHEE team on the 'light archive' repository:
-
-    https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker#use-docker-compose
-
-    * Create docker-compose.yml and docker-compose.env files
-    * Start the containers:
-
-    ```` bash
-    docker-compose start
-    ````
-
-    **Note:** If you are running this on Mac OSX you will probably need to change the default docker-compose.yml file slightly. Specifically, the paths that refer to /var/local/ will likely need to be changed to /opt/
-
-3. Run the OHIF Viewer or Lesion Tracker using the dcm4cheeDIMSE.json configuration file
-
-````bash
-cd OHIFViewer
-PACKAGE_DIRS="../Packages" meteor --settings ../config/dcm4cheeDIMSE.json
-````
-
-## Web Service URLs from DCM4CHEE:
-Original source here: https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker#web-service-urls
-
-> - Archive UI: <http://localhost:8080/dcm4chee-arc/ui> - if secured, login with
-
->     Username | Password | Role
->     --- | --- | ---
->     `user` | `user` | `user`
->     `admin` | `admin` | `user` + `admin`
-> - Keycloak Administration Console: <http://localhost:8080/auth>, login with Username: `admin`, Password: `admin`.
-> - Wildfly Administration Console: <http://localhost:9990>, login with Username: `admin`, Password: `admin`.
-> - Kibana UI: <http://localhost:5601>
-> - DICOM QIDO-RS Base URL: <http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs>
-> - DICOM STOW-RS Base URL: <http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs>
-> - DICOM WADO-RS Base URL: <http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/rs>
-> - DICOM WADO-URI: <http://localhost:8080/dcm4chee-arc/aets/DCM4CHEE/wado>

docs/latest/connecting-to-image-archives/dicomweb.md

@@ -1,6 +0,0 @@
-# Connecting to Image Archives
-
-# DICOM Web
-
-[DICOMWeb](https://en.wikipedia.org/wiki/DICOMweb) refers to RESTful DICOM Services and is a recently standardized set of guidelines for exchanging medical images and imaging metadata over the internet. Not all archives fully support it yet, but it is gaining wider adoption.
-

docs/latest/connecting-to-image-archives/google-cloud-healthcare.md

@@ -0,0 +1,71 @@
+# Google Cloud Healthcare
+
+> The [Google Cloud Healthcare API](https://cloud.google.com/healthcare/) is a
+> powerful option for storing medical imaging data in the cloud.
+
+An alternative to deploying your own PACS is to use a software-as-a-service
+provider such as Google Cloud. The Cloud Healthcare API promises to be a
+scalable, secure, cost effective image storage solution for those willing to
+store their data in the cloud. It offers an
+[almost-entirely complete DICOMWeb API](https://cloud.google.com/healthcare/docs/dicom)
+which requires tokens generated via the
+[OAuth 2.0 Sign In flow](https://developers.google.com/identity/sign-in/web/sign-in).
+Images can even be transcoded on the fly if this is desired.
+
+## Setup a Google Cloud Healthcare Project
+
+- Create a Google Cloud account
+- Create a project in Google Cloud
+- Enable the [Cloud Healthcare API](https://cloud.google.com/healthcare/) for
+  your project.
+  - (Optional): Create a Dataset and Data Store for storing your DICOM data
+- Enable the
+  [Cloud Resource Manager API](https://cloud.google.com/resource-manager/) for
+  your project.
+  - _Note:_ If you are having trouble finding the APIs, use the search box at
+    the top of the Cloud console.
+- Go to APIs & Services > Credentials to create an OAuth Consent screen and fill
+  in your application details.
+  - Under Scopes for Google APIs, click "manually paste scopes".
+  - Add the following scopes:
+    - `https://www.googleapis.com/auth/cloudplatformprojects.readonly`
+    - `https://www.googleapis.com/auth/cloud-healthcare`
+- Go to APIs & Services > Credentials to create a new set of credentials:
+
+  - Choose the "Web Application" type
+  - Set up an
+    [OAuth 2.0 Client ID](https://support.google.com/cloud/answer/6158849?hl=en)
+  - Add your domain (e.g. `http://localhost:5000`) to Authorized JavaScript
+    origins.
+  - Add your domain, plus `callback` (e.g.
+    `http://localhost:5000/callback`) to Authorized Redirect URIs.
+  - Save your Client ID for later.
+
+- (Optional): Enable Public Datasets that are being hosted by Google:
+  https://cloud.google.com/healthcare/docs/resources/public-datasets/
+
+## Run the viewer with your OAuth Client ID
+
+1. Open the `config/google.js` file and change `YOURCLIENTID` to
+   your Client ID value.
+1. Run the OHIF Viewer using the config/google.js configuration file
+
+```bash
+cd OHIFViewer
+yarn install
+APP_CONFIG=config/google.js yarn run dev
+```
+
+## Running via Docker
+
+The OHIF Viewer Docker container can be connected to Google Cloud
+Healthcare by providing a Client ID at runtime. This is a very simple
+method to get up and running.
+
+1. Install Docker (https://www.docker.com/)
+1. Run the Docker container, providing a Client ID as an environment variable.
+   Client IDs look like `xyz.apps.googleusercontent.com`.
+
+```bash
+docker run --env CLIENT_ID=$CLIENT_ID --publish 5000:80 ohif/viewer:latest
+```

docs/latest/connecting-to-image-archives/orthanc-with-docker.md

@@ -1,33 +0,0 @@
-# Orthanc with Docker
-
-Depending on whether or not you want uploaded studies to persist in Orthanc after Docker has been closed, there are two different methods for starting the Docker image:
-
-## Temporary data storage
-This command will start an instance of the jodogne/orthanc-plugins Docker image. *All data will be removed when the instance is stopped!*
-
-````
-docker run --rm -p 4242:4242 -p 8042:8042 jodogne/orthanc-plugins
-````
-
-## Persistent data storage
-In order to allow your data to persist after the instance is stopped, you first need to create an image and attached data volume with Docker. The steps are as follows:
-
-1. Create a persistent data volume for Orthanc to use
-
-    ````
-    docker create --name sampledata -v /sampledata jodogne/orthanc-plugins
-    ````
-
-    **Note: On Windows, you need to use an absolute path for the data volume, like so:**
-
-    ````
-    docker create --name sampledata -v '//C/Users/erik/sampledata' jodogne/orthanc-plugins
-    ````
-
-2. Run Orthanc from Docker with the data volume attached
-
-    ````
-    docker run --volumes-from sampledata -p 4242:4242 -p 8042:8042 jodogne/orthanc-plugins
-    ````
-
-3. Upload your data and it will be persisted

docs/latest/contributing.md

@@ -1,32 +1,103 @@
 # Contributing
 
-### I would like to contribute code - how do I do this?
+## I would like to contribute code - how do I do this?
 
 Fork the repository, make your change and submit a pull request.
 
-### Any guidance on submitting changes?
+- The OHIF Viewer consists of code from three different repositories. Make sure
+  your change is modifying the appropriate one:
+  - `ohif-core`: Business Logic
+  - `react-viewerbase`: Reusable React Component Library
+  - `Viewers`: The glue, PWA, and primary extension point
+- At a minimum, you may want to read the following documentation:
+  - [Essentials: Getting Started](./essentials/getting-started.md)
+  - [Advanced: Architecture](./advanced/architecture.md)
 
-While we do appreciate code contributions, triaging and integrating contributed code changes can be very time consuming. Please consider the following tips when working on your pull requests:
+### When changes impact multiple repositories
 
-- Functionality is appropriate for the repository. Consider posting on the forum if you are not sure.
-- Code quality is acceptable. We don't have coding standards defined, but make sure it passes ESLint and looks like the rest of the code in the repository.
-- Quality of design is acceptable. This is a bit subjective so you should consider posting on the forum for specific guidance.
-- The scope of the pull request is not too large. Please consider separate pull requests for each feature as big pull requests are very time consuming to understand.
+This is a particularly tricky scenario. We don't want to publish code in one
+repository, just so we can test and complete the other half of its requirements
+in another. Thankfully, there are a couple of ways you can test unpublished
+dependent changes locally before publishing:
 
-We will provide feedback on your pull requests as soon as possible. Following the tips above will help ensure your changes are reviewed.
+- [Use `yarn link`](https://yarnpkg.com/en/docs/cli/link)
 
-### Testing contribution pull requests
+For example if you are working on `ohif-core` and would like to use your local
+version to debug a problem in `Viewers`, simply run yarn link inside of the
+`ohif-core` project.
 
-OHIF uses [netlify](netlify.com) so that pull requests are autogenerated and available for testing.
+- If you're experiencing issues with `yarn link`,
+  [try `yalc`](https://github.com/whitecolor/yalc)
 
-For example, [this url](https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json) allows you to test [pull request 237, the request that created this FAQ entry,](https://github.com/OHIF/Viewers/pull/237) using data pulled from Amazon S3.
+Yalc provides an improved workflow as we add more and more dependent packages
+that are "in-progress". This comes into play as we begin working on extensions
+and their dependencies.
 
-Replacing the number 237 in the link below with your pull request number should let you test it as well and you can use this link for discussions on github without requiring reviewers to download and build your branch.
+```js
+// Install yalc for the first time
+yarn global add yalc
+
+// EXAMPLE: using an in-development version of ohif-core w/ Viewers locally
+// 1. Navigate to ohif-core's project root
+yarn install
+yalc publish
+
+// 2. Run the following after each change to ohif-core
+yarn build
+yalc push .
+
+// 3. Use the local package in our Viewers project. Navigate to the Viewers
+//    Project root.
+yarn install
+yalc add ohif-core
+yarn run dev
 ```
+
+## Any guidance on submitting changes?
+
+While we do appreciate code contributions, triaging and integrating contributed
+code changes can be very time consuming. Please consider the following tips when
+working on your pull requests:
+
+- Functionality is appropriate for the repository. Consider creating a GitHub
+  issue to discuss your suggested changes.
+- The scope of the pull request is not too large. Please consider separate pull
+  requests for each feature as big pull requests are very time consuming to
+  understand.
+
+We will provide feedback on your pull requests as soon as possible. Following
+the tips above will help ensure your changes are reviewed.
+
+## Testing contribution pull requests
+
+OHIF uses [netlify](netlify.com) so that pull requests are autogenerated and
+available for testing.
+
+For example, [this url][example-url] allows you to test [pull request 237, the
+request that created this FAQ entry,][pr-237] using data pulled from Amazon S3.
+
+Replacing the number 237 in the link below with your pull request number should
+let you test it as well and you can use this link for discussions on github
+without requiring reviewers to download and build your branch.
+
+```bash
 https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
 ```
 
-If you have made a documentation change, a link like this will let you preview the gitbook generated by the pull request:
-```
+If you have made a documentation change, a link like this will let you preview
+the gitbook generated by the pull request:
+
+```bash
 https://deploy-preview-237--ohif.netlify.com/contributing.html
 ```
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+
+[example-url]: https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
+[pr-237]: https://github.com/OHIF/Viewers/pull/237
+
+<!-- prettier-ignore-end -->

docs/latest/contributing/testing.md

@@ -0,0 +1,145 @@
+# Contributing: Tests
+
+> Testing is an opinionated topic. Here is a rough overview of our testing
+> philosiphy. See something you want to discuss or think should be changed? Open
+> a PR and let's discuss.
+
+You're an engineer. You know how to write code, and writing tests isn't all that
+different. But do you know why we write tests? Do you know when to write one, or
+what kind of test to write? How do you know if a test is a _"good"_ test? This
+document's goal is to give you the tools you need to make those determinations.
+
+Okay. So why do we write tests? To increase our... **CONFIDENCE**
+
+- If I do a large refactor, does everything still work?
+- If I changed some critical piece of code, is it safe to push to production?
+
+Gaining the confidence we need to answer these questions after every change is
+costly. Good tests allow us to answer them without manual regression testing.
+What and how we choose to test to increase that confidence is nuanced.
+
+## Kinds of Tests
+
+Test's buy us confidence, but not all tests are created equal. Each kind of test
+has a different cost to write and maintain. An expensive test is worth it if it
+gives us confidence that a payment is processed, but it may not be the best
+choice for asserting an element's border color.
+
+| Test Type   | Example                                                                  | Speed            | Cost                                                                     |
+| ----------- | ------------------------------------------------------------------------ | ---------------- | ------------------------------------------------------------------------ |
+| Static      | `addNums(1, '2')` called with `string`, expected `int`.                  | :rocket: Instant | :money_with_wings:                                                       |
+| Unit        | `addNums(1, 2)` returns expected result `3`                              | :airplane: Fast  | :money_with_wings::money_with_wings:                                     |
+| Integration | Clicking "Sign In", navigates to the dashboard (mocked network requests) | :running: Okay   | :money_with_wings::money_with_wings::money_with_wings:                   |
+| End-to-end  | Clicking "Sign In", navigates to the dashboard (no mocks)                | :turtle: Slow    | :money_with_wings::money_with_wings::money_with_wings::money_with_wings: |
+
+- :rocket: Speed: How quickly tests run
+- :money_with_wings: Cost: Time to write, and to debug when broken (more points
+  of failure)
+
+### Static Code Analysis
+
+Modern tooling gives us this "for free". It can catch invalid regular
+expressions, unused variables, and guarantee we're calling methods/functions
+with the expected paramater types.
+
+Example Tooling:
+
+- [ESLint][eslint-rules]
+- [TypeScript][typescript-docs] or [Flow][flow-org]
+
+### Unit Tests
+
+The building blocks of our libraries and applications. For these, you'll often
+be testing a single function or method. Conceptually, this equates to:
+
+_Pure Function Test:_
+
+- If I call `sum(2, 2)`, I expect the output to be `4`
+
+_Side Effect Test:_
+
+- If I call `resetViewport(viewport)`, I expect `cornerstone.reset` to be called
+  with `viewport`
+
+#### When to use
+
+Anything that is exposed as public API should have unit tests.
+
+#### When to avoid
+
+You're actually testing implementation details. You're testing implementation
+details if:
+
+- Your test does something that the consumer of your code would never do.
+  - IE. Using a private function
+- A refactor can break your tests
+
+### Integration Tests
+
+We write integration tests to gain confidence that several units work together.
+Generally, we want to mock as little as possible for these tests. In practice,
+this means only mocking network requests.
+
+#### When to use
+
+...
+
+### End-to-End Tests
+
+These are the most expensive tests to write and maintain. Largely because, when
+they fail, they have the largest number of potential points of failure. So why
+do we write them? Because they also buy us the most confidence.
+
+#### When to use
+
+Mission critical features and functionality, or to cover a large breadth of
+functionality until unit tests catch up. Unsure if we should have a test for
+feature `X` or scenario `Y`? Open an issue and let's discuss.
+
+## Summary
+
+- Does your test increase confidence?
+- Does the test type chosen balance the cost-to-confidence ratio?
+
+## Further Reading
+
+### General
+
+- [Assert(js) Conf 2018 Talks][assert-js-talks]
+  - [Write tests. Not too many. Mostly integration.][kent-talk] - Kent C. Dodds
+  - [I see your point, but…][gleb-talk] - Gleb Bahmutov
+- [Static vs Unit vs Integration vs E2E Testing][kent-blog] - Kent C. Dodds
+  (Blog)
+
+### End-to-end Testing w/ Cypress
+
+- [Getting Started](https://docs.cypress.io/guides/overview/why-cypress.html)
+  - Be sure to check out `Getting Started` and `Core Concepts`
+- [Best Practices](https://docs.cypress.io/guides/references/best-practices.html)
+- [Example Recipes](https://docs.cypress.io/examples/examples/recipes.html)
+
+## Testing Dorito
+
+[![testing dorito][testing-dorito-img]][testing-dorito]
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[eslint-rules]: https://eslint.org/docs/rules/
+[typescript-docs]: https://www.typescriptlang.org/docs/home.html
+[flow-org]: https://flow.org/
+<!-- Talks -->
+[assert-js-talks]: https://www.youtube.com/playlist?list=PLZ66c9_z3umNSrKSb5cmpxdXZcIPNvKGw
+[kent-talk]: https://www.youtube.com/watch?list=PLV5CVI1eNcJgNqzNwcs4UKrlJdhfDjshf
+[gleb-talk]: https://www.youtube.com/watch?v=5FnalKRjpZk
+[kent-blog]: https://kentcdodds.com/blog/unit-vs-integration-vs-e2e-tests
+<!-- Images -->
+[testing-trophy]: https://twitter.com/kentcdodds/status/960723172591992832?ref_src=twsrc%5Etfw%7Ctwcamp%5Etweetembed%7Ctwterm%5E960723172591992832&ref_url=https%3A%2F%2Fkentcdodds.com%2Fblog%2Fwrite-tests
+[aaron-square]: https://twitter.com/Carofine247/status/966727489274961920
+[gleb-pyramid]: https://twitter.com/Carofine247/status/966764532046684160/photo/3
+[testing-pyramid]: https://dojo.ministryoftesting.com/dojo/lessons/the-mobile-test-pyramid
+[testing-dorito]: https://twitter.com/denvercoder/status/960752578198843392
+[testing-dorito-img]: https://pbs.twimg.com/media/DVVHXycUMAAcN-F?format=jpg&name=4096x4096
+<!-- prettier-ignore-end -->

docs/latest/data/data-hierarchy.md

@@ -1,5 +0,0 @@
-# Data Hierarchy
-
-## Studies, Series, Instances, Frames
-
-## Display Sets

docs/latest/data/image-viewport.md

@@ -1,5 +0,0 @@
-# Image Viewport
-
-### Main Viewport Component
-
-The [imageViewerViewport](https://github.com/OHIF/Viewers/tree/master/Packages/ohif-viewerbase/client/components/viewer/imageViewerViewport) component

docs/latest/data/measurements-and-annotations.md

@@ -1 +0,0 @@
-# Measurements and Annotations

docs/latest/data/tool-management.md

@@ -1 +0,0 @@
-# Tool Management

docs/latest/deployment/_embedded-viewer-diagram.md

@@ -0,0 +1,4 @@
+<div style="text-align: center;">
+  <img src="/assets/img/embedded-viewer-diagram.png" alt="Embedded Viewer Diagram" style="margin: 0 auto;" />
+  <div><i>embedded viewer diagram</i></div>
+</div>

docs/latest/deployment/_nginx-image-archive-diagram.md

@@ -0,0 +1,4 @@
+<div style="text-align: center;">
+  <img src="/assets/img/nginx-image-archive.png" alt="request flow example" style="margin: 0 auto;" />
+  <div><i>simplified request flow diagram</i></div>
+</div>

docs/latest/deployment/_user-account-control-flow-diagram.md

@@ -0,0 +1,4 @@
+<div style="text-align: center;">
+  <img src="/assets/img/user-access-control-request-flow.png" alt="request flow example" style="margin: 0 auto;" />
+  <div><i>simplified request flow diagram</i></div>
+</div>

docs/latest/deployment/building-for-production.md

@@ -1,5 +0,0 @@
-# Deployment
-
-There are a few possible approaches for deploying the application:
-
--

docs/latest/deployment/index.md

@@ -0,0 +1,210 @@
+# Deployment
+
+The OHIF Viewer can be embedded in other web applications via it's [packaged
+script source][ohif-viewer-npm], or served up as a stand-alone PWA ([progressive
+web application][pwa-url]) by building and hosting a collection of static
+assets. In either case, you will need to configure your instance of the Viewer
+so that it can connect to your data source (the database or PACS that provides
+the data your Viewer will display).
+
+## Overview
+
+Our goal is to make deployment as simple and painless as possible; however,
+there is an inherent amount of complexity in customizing, optimizing, and
+deploying web applications. If you find yourself a little lost, please don't
+hesitate to [reach out for help](/help.md)
+
+## Deployment Scenarios
+
+### Embedded Viewer
+
+The quickest and easiest way to get the OHIF Viewer up and running is to embed
+it into an existing web application. It allows us to forego a "build step", and
+add a powerful medical imaging viewer to an existing web page using only a few
+include tags.
+
+- Read more about it here: [Embedded Viewer](./recipes/embedded-viewer.md)
+- And check out our [live demo on CodeSandbox][code-sandbox]
+
+{% include "./_embedded-viewer-diagram.md" %}
+
+### Stand-alone Viewer
+
+Deploying the OHIF Viewer as a stand-alone web application provides many
+benefits, but comes at the cost of time and complexity. Some benefits include:
+
+_Today:_
+
+- Leverage [extensions](/advanced/extensions.md) to drop-in powerful new
+  features
+- Add routes and customize the viewer's workflow
+- Finer control over styling and whitelabeling
+
+_In the future:_
+
+- The ability to package the viewer for [App Store distribution][app-store]
+- Leverage `service-workers` for offline support and speed benefits from caching
+
+#### Hosted Static Assets
+
+At the end of the day, a production OHIF Viewer instance is a collection of
+HTML, CSS, JS, Font Files, and Images. We "build" those files from our
+`source code` with configuration specific to our project. We then make those
+files publicly accessible by hosting them on a Web Server.
+
+If you have not deployed a web application before, this may be a good time to
+[reach out for help](/help.md), as these steps assume prior web development and
+deployment experience.
+
+##### Part 1 - Build Production Assets
+
+"Building", or creating, the files you will need is the same regardless of the
+web host you choose. You can find detailed instructions on how to configure and
+build the OHIF Viewer in our
+["Build for Production" guide](./recipes/build-for-production.md).
+
+##### Part 2 - Host Your App
+
+There are a lot of [benefits to hosting static assets][host-static-assets] over
+dynamic content. You can find instructions on how to host your build's output
+via one of these guides:
+
+_Drag-n-drop_
+
+- [Netlify: Drop](/deployment/recipes/static-assets.md#netlify-drop)
+
+_Easy_
+
+- [Surge.sh](/deployment/recipes/static-assets.md#surgesh)
+- [GitHub Pages](/deployment/recipes/static-assets.md#github-pages)
+
+_Advanced_
+
+- [AWS S3 + Cloudfront](/deployment/recipes/static-assets.md#aws-s3--cloudfront)
+- [GCP + Cloudflare](/deployment/recipes/static-assets.md#gcp--cloudflare)
+- [Azure](/deployment/recipes/static-assets.md#azure)
+
+## Data
+
+The OHIF Viewer is able to connect to any data source that implements the [DICOM
+Web Standard][dicom-web-standard]. [DICOM Web][dicom-web] refers to RESTful
+DICOM Services -- a recently standardized set of guidelines for exchanging
+medical images and imaging metadata over the internet. Not all archives fully
+support it yet, but it is gaining wider adoption.
+
+### Configure Connection
+
+If you have an existing archive and intend to host the OHIF Viewer at the same
+domain name as your archive, then connecting the two is as simple as following
+the steps layed out in our
+[Configuration Essentials Guide](./../essentials/configuration.md).
+
+#### What if I don't have an imaging archive?
+
+We provide some guidance on configuring a local image archive in our
+[Data Source Essentials](./../essentials/data-source.md) guide. Hosting an
+archive remotely is a little trickier. You can check out some of our
+[advanced recipes](#recipes) for modeled setups that may work for you.
+
+#### What if I intend to host the OHIF Viewer at a different domain?
+
+There are two important steps to making sure this setup works:
+
+1. Your Image Archive needs to be exposed, in some way, to the open web. This
+   can be directly, or through a `reverse proxy`, but the Viewer needs _some
+   way_ to request it's data.
+2. \* Your Image Archive needs to have appropriate CORS (Cross-Origin Resource
+   Sharing) Headers
+
+> \* Cross-Origin Resource Sharing (CORS) is a mechanism that uses additional
+> HTTP headers to tell a browser to let a web application running at one origin
+> (domain) have permission to access selected resources from a server at a
+> different origin. - [MDN Web Docs: Web - Http - CORS][cors]
+
+Most image archives do not provide either of these features "out of the box".
+It's common to use IIS, Nginx, or Apache to route incoming requests and append
+appropriate headers. You can find an example of this setup in our
+[Nginx + Image Archive Deployment Recipe](deployment/recipes/nginx--image-archive.md).
+
+#### What if my archive doesn't support DicomWeb?
+
+> This is possible to do with the OHIF Viewer, but not as straightforward. Look
+> out for documentation on this subject in the near future.
+
+...
+
+### Securing Your Data
+
+> Feeling lost? Securing your data is important, and it can be hard to tell if
+> you've gotten it right. Don't hesitate to work with professional auditors, or
+> [enlist help from experts](./../help.md).
+
+The OHIF Viewer can be configured to work with authorization servers that
+support one or more of the OpenID-Connect authorization flows. The Viewer finds
+it's OpenID-Connect settings on the `oidc` configuration key. You can set these
+values following the instructions laid out in the
+[Configuration Essentials Guide](./../essentials/configuration.md).
+
+_Example OpenID-Connect Settings:_
+
+```js
+window.config = {
+  ...
+  oidc: [
+    {
+      // ~ REQUIRED
+      // Authorization Server URL
+      authority: 'http://127.0.0.1/auth/realms/ohif',
+      client_id: 'ohif-viewer',
+      redirect_uri: 'http://127.0.0.1/callback', // `OHIFStandaloneViewer.js`
+      response_type: 'code', // "Authorization Code Flow"
+      scope: 'openid', // email profile openid
+      // ~ OPTIONAL
+      post_logout_redirect_uri: '/logout-redirect.html',
+    },
+  ],
+}
+```
+
+You can find an example of this setup in our
+[User Account Control Deployment Recipe](deployment/recipes/user-account-control.md).
+
+#### Choosing a Flow for the Viewer
+
+In general, we recommend using the "Authorization Code Flow" ( [see
+`response_type=code` here][code-flows]); however, the "Implicit Flow" ( [see
+`response_type=token` here][code-flows]) can work if additonal precautions are
+taken. If the flow you've chosen produces a JWT Token, it's validity can be used
+to secure access to your Image Archive as well.
+
+### Recipes
+
+We've included a few recipes for common deployment scenarios. There are many,
+many possible configurations, so please don't feel limited to these setups.
+Please feel free to suggest or contribute your own recipes.
+
+- Script Include
+  - [Embedding the Viewer](deployment/recipes/embedded-viewer.md)
+- Stand-Alone
+  - [Build for Production](deployment/recipes/build-for-production.md)
+  - [Static](deployment/recipes/static-assets.md)
+  - [Nginx + Image Archive](deployment/recipes/nginx--image-archive.md)
+  - [User Account Control](deployment/recipes/user-account-control.md)
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+
+[ohif-viewer-npm]: https://www.npmjs.com/package/ohif-viewer
+[pwa-url]: https://developers.google.com/web/progressive-web-apps/
+[static-assets-url]: https://www.maxcdn.com/one/visual-glossary/static-content/
+[app-store]: https://medium.freecodecamp.org/i-built-a-pwa-and-published-it-in-3-app-stores-heres-what-i-learned-7cb3f56daf9b
+[dicom-web-standard]: https://www.dicomstandard.org/dicomweb/
+[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
+[host-static-assets]: https://www.netlify.com/blog/2016/05/18/9-reasons-your-site-should-be-static/
+[cors]: https://developer.mozilla.org/en-US/docs/Web/HTTP/CORS
+[code-flows]: https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660
+[code-sandbox]: https://codesandbox.io/s/ohif-viewer-script-tag-usage-b3st9
+<!-- prettier-ignore-end -->

docs/latest/deployment/recipes/build-for-production.md

@@ -0,0 +1,182 @@
+# Build for Production
+
+> If you've already followed the
+> ["Getting Started" Guide](/essentials/getting-started.md), you can skip ahead
+> to [Configuration](#configuration)
+
+## Overview
+
+### Build Machine Requirements
+
+- [Node.js & NPM](https://nodejs.org/en/download/)
+- [Yarn](https://yarnpkg.com/lang/en/docs/install/)
+- [Git](https://www.atlassian.com/git/tutorials/install-git)
+
+### Getting the Code
+
+_With Git:_
+
+```bash
+# Clone the remote repository to your local machine
+git clone https://github.com/OHIF/Viewers.git
+
+# Make sure the local code reflects the `react` version of the OHIF Viewer
+git checkout react
+```
+
+More on: _[`git clone`](https://git-scm.com/docs/git-clone),
+[`git checkout`](https://git-scm.com/docs/git-checkout)_
+
+_From .zip:_
+
+[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/react.zip)
+
+### Restore Dependencies & Build
+
+Open your terminal, and navigate to the directory containing the source files.
+Next run these commands:
+
+```js
+// Restore dependencies
+yarn install
+
+// Build source code for production
+yarn run build:web
+```
+
+If everything worked as expected, you should have a new `build/` directory in
+the project's folder. It should roughly resemble the following:
+
+```bash
+build
+├── config/
+├── static/
+├── index.html
+├── manifest.json
+├── service-worker.js
+└── ...
+```
+
+By default, the build output will connect to OHIF's publicly accessible PACS. If
+this is your first time setting up the OHIF Viewer, it is recommended that you
+test with these default settings. After testing, you can find instructions on
+how to configure the project for your own imaging archive below.
+
+### Configuration
+
+> This step assumes you have an imaging archive. If you need assistance setting
+> one up, check out the [`Data Source` Guide](./../../essentials/data-source.md)
+> or a deployment recipe that contains an open source Image Archive
+
+#### How it Works
+
+The configuration for our project is in the `/public/config` directory. Our
+build process knows which configuration file to use based on the `APP_CONFIG`
+environment variable. By default, its value is
+[`default.js`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js).
+When we build, the `%APP_CONFIG%` value in
+our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/index.html)
+file is substituted for the correct configuration file's name. This sets
+the`window.config` equal to our configuration file's value.
+
+#### How do I configure my project?
+
+The simplest way is to update the existing default config:
+
+_/public/config/default.js_
+
+```js
+window.config = {
+  routerBasename: '/',
+  servers: {
+    dicomWeb: [
+      {
+        name: 'DCM4CHEE',
+        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        qidoSupportsIncludeField: true,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+        requestOptions: {
+          requestFromBrowser: true,
+        },
+      },
+    ],
+  },
+};
+```
+
+You can also create a new config file and specify its path relative to the build
+output's root by setting the `APP_CONFIG` environment variable. You can set the
+value of this environment variable a few different ways:
+
+- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
+- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
+- Using the `cross-env` package in an npm script:
+  - `"build": "cross-env APP_CONFIG=config/my-config.js react-scripts build"`
+
+After updating the configuration, `yarn run build:web` to generate updated build
+output.
+
+## Next Steps
+
+### Deploying Build Output
+
+_Drag-n-drop_
+
+- [Netlify: Drop](/deployment/recipes/static-assets.md#netlify-drop)
+
+_Easy_
+
+- [Surge.sh](/deployment/recipes/static-assets.md#surgesh)
+- [GitHub Pages](/deployment/recipes/static-assets.md#github-pages)
+
+_Advanced_
+
+- [AWS S3 + Cloudfront](/deployment/recipes/static-assets.md#aws-s3--cloudfront)
+- [GCP + Cloudflare](/deployment/recipes/static-assets.md#gcp--cloudflare)
+- [Azure](/deployment/recipes/static-assets.md#azure)
+
+### Testing Build Output Locally
+
+A quick way to test your build output locally is to spin up a small webserver.
+You can do this by running the following commands in the `build/` output
+directory:
+
+```js
+// Install http-server as a globally available package
+yarn global add http-server
+
+// Serve the files in our current directory
+// Accessible at: `http://localhost:8080`
+http-server
+```
+
+### Automating Builds and Deployments
+
+If you found setting up your environmnent and running all of these steps to be a
+bit tedious, then you are in good company. Thankfully, there are a large number
+of tools available to assist with automating tasks like building and deploying
+web application. For a starting point, check out this repository's own use of:
+
+- [CircleCI][circleci]: [config.yaml][circleci-config]
+- [Netlify][netlify]: [netlify.toml][netlify.toml] |
+  [generateStaticSite.sh][generatestaticsite.sh]
+- [Semantic-Release][semantic-release]: [.releaserc][releaserc]
+
+## Troubleshooting
+
+> Issues and resolutions for common GitHub issues will be summarized here
+
+...
+
+<!-- prettier-ignore-start -->
+[circleci]: https://circleci.com/gh/OHIF/Viewers
+[circleci-config]: https://github.com/OHIF/Viewers/blob/react/.circleci/config.yml
+[netlify]: https://app.netlify.com/sites/ohif/deploys
+[netlify.toml]: https://github.com/OHIF/Viewers/blob/react/netlify.toml
+[generateStaticSite.sh]: https://github.com/OHIF/Viewers/blob/react/generateStaticSite.sh
+[semantic-release]: https://semantic-release.gitbook.io/semantic-release/
+[releaserc]: https://github.com/OHIF/Viewers/blob/react/.releaserc
+<!-- prettier-ignore-end -->

docs/latest/deployment/recipes/embedded-viewer.md

@@ -0,0 +1,104 @@
+# Embedded Viewer
+
+The quickest and easiest way to get the OHIF Viewer up and running is to embed
+it into an existing web application. It allows us to forego a "build step", and
+add a powerful medical imaging viewer to an existing web page using only a few
+include tags. Here's how it works:
+
+{% include "./../_embedded-viewer-diagram.md" %}
+
+1. Create a new web page or template that includes the following external
+   dependencies:
+
+<ul>
+  <li>
+    <a href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
+      <code>bootstrap@3.3.7</code>
+    </a>
+  </li>
+  <li>
+    <a href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700|Sanchez&display=swap">
+      <code>Google Fonts, Sanchez & Roboto</code>
+    </a>
+  </li>
+  <li>
+    <a href="https://unpkg.com/react@16/umd/react.production.min.js">
+      <code>react@16.8.6</code>
+    </a>
+  </li>
+  <li>
+    <a href="https://unpkg.com/react-dom@16/umd/react-dom.production.min.js">
+      <code>react-dom@16.8.6</code>
+    </a>
+  </li>
+  <li>
+    <a href="https://unpkg.com/ohif-viewer/dist/index.umd.js">
+      <code>ohif-viewer@latest</code>
+    </a>
+  </li>
+</ul>
+
+<ol start="2">
+  <li>The <a href="">WADO Image Loader Codecs and Web Worker source code</a>
+  should be accessible from your server's root</li>
+  <li>Create a JS Object to hold the OHIF Viewer's configuration. Here are some
+   example values that would allow the viewer to hit our public PACS:</li>
+</ol>
+
+```js
+// Set before importing `ohif-viewer`
+window.config = {
+  // default: '/'
+  routerBasename: '/',
+  servers: {
+    dicomWeb: [
+      {
+        name: 'DCM4CHEE',
+        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        qidoSupportsIncludeField: true,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+        requestOptions: {
+          requestFromBrowser: true,
+        },
+      },
+    ],
+  },
+};
+```
+
+<ol start="5"><li>
+  Render the viewer in the web page's target <code>div</code>
+</li></ol>
+
+```js
+// Made available by the `ohif-viewer` script included in step 1
+var Viewer = window.OHIFStandaloneViewer.App;
+var app = React.createElement(Viewer, window.config, null);
+
+ReactDOM.render(app, document.getElementById('ohif-viewer-target'));
+```
+
+#### Tips & Tricks
+
+> I'm having trouble getting this to work. Where can I go for help?
+
+First, check out this fully functional [CodeSandbox][code-sandbox] example. If
+you're still having trouble, feel free to search or GitHub issues. Can't find
+anything related your problem? Create a new one.
+
+> When I include bootstrap, other styles on my page no longer work correctly.
+> What can I do?
+
+When we include `bootsrap` (and the other dependencies), they are added
+globally. This has the potential of causing conflicts with other scripts and
+styles on the page. To prevent this, `embed` the viewer in a new/empty web page.
+Have that working? Good. Now `embed` that new page using an
+[`<iframe>` element](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/iframe).
+
+This should produce the expected result while also protecting your page from any
+globally defined styles/scripts.
+
+[code-sandbox]: https://codesandbox.io/s/ohif-viewer-script-tag-usage-b3st9

docs/latest/deployment/recipes/nginx--image-archive.md

@@ -0,0 +1,245 @@
+# Nginx + Image Archive
+
+> DISCLAIMER! We make no claims or guarantees of this approach's security. If in
+> doubt, enlist the help of an expert and conduct proper audits.
+
+At a certain point, you may want others to have access to your instance of the
+OHIF Viewer and its medical imaging data. This post covers one of many potential
+setups that accomplish that. Please note, noticably absent is user account
+control.
+
+Do not use this recipe to host sensitive medical data on the open web. Depending
+on your company's policies, this may be an appropriate setup on an internal
+network when protected with a server's basic authentication. For a more robust
+setup, check out our [user account control recipe](./user-account-control.md)
+that builds on the lessons learned here.
+
+## Overview
+
+Our two biggest hurdles when hosting our image archive and web client are:
+
+- Risks related to exposing our PACS to the netowrk
+- Cross-Origin Resource Sharing (CORS) requests
+
+### Handling Web Requests
+
+We mittigate our first issue by allowing [Nginx][nginx] to handle incoming web
+requests. Nginx is open source software for web serving, reverse proxying,
+caching, and more. It's designed for maximum performance and stability --
+allowing us to more reliably serve content than Orthanc's built-in server can.
+
+More specifically, we accomplish this by using a
+[`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy) to retrieve
+resources from our image archive (Orthanc), and when accessing its web admin.
+
+> A reverse proxy is a type of proxy server that retrieves resources on behalf
+> of a client from one or more servers. These resources are then returned to the
+> client, appearing as if they originated from the proxy server itself.
+
+### CORS Issues
+
+Cross-Origin Resource Sharing (CORS) is a mechanism that uses HTTP headers to
+tell a browser which web applications have permission to access selected
+resources from a server at a different origin (domain, protocol, port). IE. By
+default, a Web App located at `http://my-website.com` can't access resources
+hosted at `http://not-my-website.com`
+
+We can solve this one of two ways:
+
+1. Have our Image Archive located at the same domain as our Web App
+2. Add appropriate `Access-Control-Allow-*` HTTP headers
+
+This solution uses the first approach, but you can see an example of the second
+in the `docker-compose` bundled with this project for local development:
+[HERE](https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/Nginx-Orthanc/docker-compose.yml)
+
+You can read more about CORS in this Medium article: [Understanding
+CORS][understanding-cors]
+
+### Diagram
+
+This setup allows us to create a setup similar to the one pictured below:
+
+{% include "./../_nginx-image-archive-diagram.md" %}
+
+- All web requests are routed through `nginx` on our `OpenResty` image
+- `/pacs` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints
+- `/pacs-admin` is a reverse proxy for `orthanc`'s Web Admin
+- All static resources for OHIF Viewer are served up by `nginx` when a matching
+  route for that resource is requested
+
+## Getting Started
+
+### Requirements
+
+- Docker
+  - [Docker for Mac](https://docs.docker.com/docker-for-mac/)
+  - [Docker for Windows](https://docs.docker.com/docker-for-windows/)
+
+_Not sure if you have `docker` installed already? Try running `docker --version`
+in command prompt or terminal_
+
+### Setup
+
+_Spin Things Up_
+
+- Navigate to `<project-root>/docker/OpenResty-Orthanc` in your shell
+- Run `docker-compose up`
+
+_Upload Your First Study_
+
+- Navigate to `http://127.0.0.1/pacs-admin`
+- From the top right, select "Upload"
+- Click "Select files to upload..." (DICOM)
+- Click "Start the upload"
+- Navigate back to `http://127.0.0.1/` to view your studies in the Study List
+
+### Troubleshooting
+
+_Exit code 137_
+
+This means Docker ran out of memory. Open Docker Desktop, go to the `advanced`
+tab, and increase the amount of Memory available.
+
+_Cannot create container for service X_
+
+Use this one with caution: `docker system prune`
+
+_X is already running_
+
+Stop running all containers:
+
+- Win: `docker ps -a -q | ForEach { docker stop $_ }`
+- Linux: `docker stop $(docker ps -a -q)`
+
+### Configuration
+
+After verifying that everything runs with default configuration values, you will
+likely want to update:
+
+- The domain: `http://127.0.0.1`
+
+#### OHIF Viewer
+
+The OHIF Viewer's configuration is imported from a static `.js` file and made
+available globally at `window.config`. The configuration we use is set to a
+specific file when we build the viewer, and determined by the env variable:
+`APP_CONFIG`. You can see where we set its value in the `dockerfile` for this
+solution:
+
+`ENV APP_CONFIG=config/docker_openresty-orthanc.js`
+
+You can find the configuration we're using here:
+`/public/config/docker_openresty-orthanc.js`
+
+To rebuild the `webapp` image created by our `dockerfile` after updating the
+Viewer's configuration, you can run:
+
+- `docker-compose build` OR
+- `docker-compose up --build`
+
+#### Other
+
+All other files are found in: `/docker/OpenResty-Orthanc/`
+
+| Service           | Configuration                                  | Docs                                        |
+| ----------------- | ---------------------------------------------- | ------------------------------------------- |
+| OHIF Viewer       | [dockerfile][dockerfile] / [config.js][config] | You're reading them now!                    |
+| OpenResty (Nginx) | [`/nginx.conf`][config-nginx]                  | [lua-resty-openidc][lua-resty-openidc-docs] |
+| Orthanc           | [`/orthanc.json`][config-orthanc]              | [Here][orthanc-docs]                        |
+
+## Next Steps
+
+### Deploying to Production
+
+While these configuration and docker-compose files model an environment suitable
+for production, they are not easy to deploy "as is". You can either:
+
+- Manually recreate this environment and deploy built application files **OR**
+- Deploy to a cloud kubernetes provider like
+  [Digital Ocean](https://www.digitalocean.com/products/kubernetes/) **OR**
+  - [See a full list of cloud providers here](https://landscape.cncf.io/category=cloud&format=card-mode&grouping=category)
+- Find and follow your preferred provider's guide on setting up
+  [swarms and stacks](https://docs.docker.com/get-started/)
+
+### Adding SSL
+
+Adding SSL registration and renewal for your domain with Let's Encrypt that
+terminates at Nginx is an incredibly important step toward securing your data.
+Here are some resources, specific to this setup, that may be helpful:
+
+- [lua-resty-auto-ssl](https://github.com/GUI/lua-resty-auto-ssl)
+- [Let's Encrypt + Nginx](https://www.nginx.com/blog/using-free-ssltls-certificates-from-lets-encrypt-with-nginx/)
+
+While we terminate SSL at Nginx, it may be worth using self signed certificates
+for communication between services.
+
+- [SSL Termination for TCP Upstream Servers](https://docs.nginx.com/nginx/admin-guide/security-controls/terminating-ssl-tcp/)
+
+### Use PostgresSQL w/ Orthanc
+
+Orthanc can handle a large amount of data and requests, but if you find that
+requests start to slow as you add more and more studies, you may want to
+configure your Orthanc instance to use PostgresSQL. Instructions on how to do
+that can be found in the
+[`Orthanc Server Book`](http://book.orthanc-server.com/users/docker.html), under
+"PostgreSQL and Orthanc inside Docker"
+
+### Improving This Guide
+
+Here are some improvements this guide would benefit from, and that we would be
+more than happy to accept Pull Requests for:
+
+- SSL Support
+- Complete configuration with `.env` file (or something similar)
+- Any security issues
+- One-click deploy to a cloud provider
+
+## Resources
+
+### Misc. Helpful Commands
+
+_Check if `nginx.conf` is valid:_
+
+```bash
+docker run --rm -t -a stdout --name my-openresty -v $PWD/config/:/usr/local/openresty/nginx/conf/:ro openresty/openresty:alpine-fat openresty -c /usr/local/openresty/nginx/conf/nginx.conf -t
+```
+
+_Interact w/ running container:_
+
+`docker exec -it CONTAINER_NAME bash`
+
+_List running containers:_
+
+`docker ps`
+
+### Referenced Articles
+
+For more documentation on the software we've chosen to use, you may find the
+following resources helpful:
+
+- [Orthanc for Docker](http://book.orthanc-server.com/users/docker.html)
+- [OpenResty Guide](http://www.staticshin.com/programming/definitely-an-open-resty-guide/)
+- [Lua Ngx API](https://openresty-reference.readthedocs.io/en/latest/Lua_Nginx_API/)
+
+For a different take on this setup, check out the repository one of our
+community members put together:
+
+- [mjstealey/ohif-orthanc-dimse-docker](https://github.com/mjstealey/ohif-orthanc-dimse-docker)
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+<!-- DOCS -->
+[nginx]: https://www.nginx.com/resources/glossary/nginx/
+[understanding-cors]: https://medium.com/@baphemot/understanding-cors-18ad6b478e2b
+[orthanc-docs]: http://book.orthanc-server.com/users/configuration.html#configuration
+[lua-resty-openidc-docs]: https://github.com/zmartzone/lua-resty-openidc
+<!-- SRC -->
+[config]: #
+[dockerfile]: #
+[config-nginx]: #
+[config-orthanc]: #
+<!-- prettier-ignore-end -->

docs/latest/deployment/recipes/static-assets.md

@@ -0,0 +1,149 @@
+# Deploy Static Assets
+
+> WARNING! All of these solutions stand-up a publicly accessible web viewer. Do
+> not hook your hosted viewer up to a sensitive source of data without
+> implementing authentication.
+
+There are a lot of options for deploying static assets. Some services, like
+`netlify` and `surge.sh`, specialize in static websites. You'll notice that
+deploying with them requires much less time and effort, but comes at the cost of
+less product offerings.
+
+While not required, it can simplify things to host your Web Viewer alongside
+your image archive. Services with more robust product offerings, like
+`Google Cloud`, `Microsoft's Azure`, and `Amazon Web Services (AWS)`, are able
+to accomodate this setup.
+
+_Drag-n-drop_
+
+- [Netlify: Drop](#netlify-drop)
+
+_Easy_
+
+- [Surge.sh](#surgesh)
+- [GitHub Pages](#github-pages)
+
+_Advanced_
+
+- [AWS S3 + Cloudfront](#aws-s3--cloudfront)
+- [GCP + Cloudflare](#gcp--cloudflare)
+- [Azure](#azure)
+
+## Drag-n-drop
+
+### Netlify: Drop
+
+> Build, deploy, and manage modern web projects. An all-in-one workflow that
+> combines global deployment, continuous integration, and automatic HTTPS. And
+> that’s just the beginning.
+
+![netlify-drop example](../../assets/img/netlify-drop.gif)
+
+_GIF demonstrating deployment with Netlify Drop_
+
+1. https://app.netlify.com/drop
+2. Drag your `build/` folder on to the drop target
+3. ...
+4. _annnd you're done_
+
+**Features:**
+
+- Custom domains & HTTPS
+- Instant Git integration
+- Continuous deployment
+- Deploy previews
+- Access to add-ons
+
+(Non-free tiers include identity, FaaS, Forms, etc.)
+
+Learn more about [Netlify on their website](https://www.netlify.com/)
+
+## Easy
+
+### Surge.sh
+
+> Static web publishing for Front-End Developers. Simple, single-command web
+> publishing. Publish HTML, CSS, and JS for free, without leaving the command
+> line.
+
+![surge.sh deploy example](../../assets/img/surge-deploy.gif)
+
+_GIF demonstrating deployment with surge_
+
+```shell
+# Add surge command
+yarn global add surge
+
+# In the build directory
+surge
+```
+
+**Features:**
+
+- Free custom domain support
+- Free SSL for surge.sh subdomains
+- pushState support for single page apps
+- Custom 404.html pages
+- Barrier-free deployment through the CLI
+- Easy integration into your Grunt toolchain
+- Cross-origin resource support
+- And more…
+
+Learn more about [surge.sh on their website](https://surge.sh/)
+
+### GitHub Pages
+
+> WARNING! While great for project sites and light use, it is not advised to use
+> GitHub Pages for production workloads. Please consider using a different
+> service for mission critical applications.
+
+> Websites for you and your projects. Hosted directly from your GitHub
+> repository. Just edit, push, and your changes are live.
+
+This deploy strategy makes more sense if you intend to maintain your project in
+a GitHub repository. It allows you to specify a `branch` or `folder` as the
+target for a GitHub Page's website. As you push code changes, the hosted content
+updates to reflect those changes.
+
+1. Head over to GitHub.com and create a new repository, or go to an existing
+   one. Click on the Settings tab.
+2. Scroll down to the GitHub Pages section. Choose the `branch` or `folder` you
+   would like as the "root" of your website.
+3. Fire up a browser and go to `http://username.github.io/repository`
+
+Configuring Your Site:
+
+- [Setting up a custom domain](https://help.github.com/en/articles/using-a-custom-domain-with-github-pages)
+- [Setting up SSL](https://help.github.com/en/articles/securing-your-github-pages-site-with-https)
+
+Learn more about [GitHub Pages on its website](https://pages.github.com/)
+
+## Advanced
+
+All of these options, while using providers with more service offerings,
+demonstrate how to host the viewer with their respective file storage and CDN
+offerings. While you can serve your static assets this way, if you're going
+through the trouble of using AWS/GCP/Azure, it's more likely you're doing so to
+avoid using a proxy or to simplify authentication.
+
+If that is the case, check out some of our more advanced `docker` deployments
+that target these providers from the left-hand sidepanel.
+
+These guides can be a bit longer and a update more frequently. To provide
+accurate documentation, we will link to each provider's own recommended steps:
+
+### AWS S3 + Cloudfront
+
+- [Host a Static Website](https://docs.aws.amazon.com/AmazonS3/latest/dev/website-hosting-custom-domain-walkthrough.html)
+- [Speed Up Your Website with Cloudfront](https://docs.aws.amazon.com/AmazonS3/latest/dev/website-hosting-cloudfront-walkthrough.html)
+
+### GCP + Cloudflare
+
+- [Things to Know Before Getting Started](https://code.luasoftware.com/tutorials/google-cloud-storage/things-to-know-before-hosting-static-website-on-google-cloud-storage/)
+- [Hosting a Static Website on GCP](https://cloud.google.com/storage/docs/hosting-static-website)
+
+### Azure
+
+- [Host a Static Website](https://docs.microsoft.com/en-us/azure/storage/blobs/storage-blob-static-website)
+- [Add SSL Support](https://docs.microsoft.com/en-us/azure/storage/blobs/storage-https-custom-domain-cdn)
+- [Configure a Custom Domain](https://docs.microsoft.com/en-us/azure/storage/blobs/storage-custom-domain-name)

docs/latest/deployment/recipes/user-account-control.md

@@ -0,0 +1,289 @@
+# User Account Control
+
+> DISCLAIMER! We make no claims or guarantees of this approach's security. If in
+> doubt, enlist the help of an expert and conduct proper audits.
+
+Making a viewer and its medical imaging data accessible on the open web can
+provide a lot of benefits, but requires additional security to make sure
+sensitive information can only be viewed by authorized individuals. Most image
+archives are equipped with basic security measures, but they are not
+robust/secure enough for the open web.
+
+This guide covers one of many potential production setups that secure our
+sensitive data.
+
+## Overview
+
+This guide builds on top of our
+[Nginx + Image Archive guide](/deployment/recipes/nginx--image-archive.md),
+wherein we used a [`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy)
+to retrieve resources from our image archive (Orthanc).
+
+To add support for "User Account Control" we introduce
+[Keycloak](https://www.keycloak.org/about.html). Keycloak is an open source
+Identity and Access Management solution that makes it easy to secure
+applications and services with little to no code. We improve upon our
+`reverse proxy` setup by integrating Keycloak and Nginx to create an
+`authenticating reverse proxy`.
+
+> An authenticating reverse proxy is a reverse proxy that only retrieves the
+> resources on behalf of a client if the client has been authenticated. If a
+> client is not authenticated they can be redirected to a login page.
+
+This setup allows us to create a setup similar to the one pictured below:
+
+{% include "./../_user-account-control-flow-diagram.md" %}
+
+- All web requests are routed through `nginx` on our `OpenResty` image
+- `/pacs` is a reverse proxy for `orthanc`'s `DICOM Web` endpoints
+  - Requires valid `Authorization: Bearer <token>` header
+- `/pacs-admin` is a reverse proxy for `orthanc`'s Web Admin
+- `/auth` is a reverse proxy for `keycloak`
+- All static resources for OHIF Viewer are unprotected and accessible. We have
+  application logic that will redirect unauthenticated users to the appropriate
+  `keycloak` login screen.
+
+## Getting Started
+
+### Requirements
+
+- Docker
+  - [Docker for Mac](https://docs.docker.com/docker-for-mac/)
+  - [Docker for Windows](https://docs.docker.com/docker-for-windows/)
+
+_Not sure if you have `docker` installed already? Try running `docker --version`
+in command prompt or terminal_
+
+### Setup
+
+_Spin Things Up_
+
+- Navigate to `<project-root>/docker/OpenResty-Orthanc-Keycloak` in your shell
+- Run `docker-compose up`
+
+_Create Your First User_
+
+- Navigate to: `http://127.0.0.1/auth/admin`
+- Sign in with: `admin`/`password`
+- From the top left dropdown, select the `Ohif` realm
+- From the left sidebar, under `Manage`, select `Users`
+- Click `Add User`
+  - Username: `test`
+  - Email Verified: `ON`
+  - Click `Save`
+- Click the `Credentials` Tab
+  - New Pasword: `test`
+  - Password Confirmation: `test`
+  - Temporary: `OFF`
+  - Click: `Reset Password`
+- From the top right dropdown, select `Admin`, then `Sign Out`
+
+_Sign In_
+
+- Navigate to `http://127.0.0.1/`
+- Username: `test`, Password: `test`
+- Click `Log In`
+
+_Upload Your First Study_
+
+- Navigate to `http://127.0.0.1/pacs-admin`
+- If you're not already logged in, use `test`/`test`
+- From the top right, select "Upload"
+- Click "Select files to upload..." (DICOM)
+- Click "Start the upload"
+- Navigate back to `http://127.0.0.1/` to view your studies in the Study List
+
+### Troubleshooting
+
+_Exit code 137_
+
+This means Docker ran out of memory. Open Docker Desktop, go to the `advanced`
+tab, and increase the amount of Memory available.
+
+_Cannot create container for service X_
+
+Use this one with caution: `docker system prune`
+
+_X is already running_
+
+Stop running all containers:
+
+- Win: `docker ps -a -q | ForEach { docker stop $_ }`
+- Linux: `docker stop $(docker ps -a -q)`
+
+### Configuration
+
+After verifying that everything runs with default configuration values, you will
+likely want to update:
+
+- The domain: `http://127.0.0.1`
+- Set secure, non-default passwords
+- Regenerate Keycloak Client Secrets
+
+#### OHIF Viewer
+
+The OHIF Viewer's configuration is imported from a static `.js` file and made
+available globally at `window.config`. The configuration we use is set to a
+specific file when we build the viewer, and determined by the env variable:
+`APP_CONFIG`. You can see where we set its value in the `dockerfile` for this
+solution:
+
+`ENV APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
+
+You can find the configuration we're using here:
+`/public/config/docker_openresty-orthanc-keycloak.js`
+
+To rebuild the `webapp` image created by our `dockerfile` after updating the
+Viewer's configuration, you can run:
+
+- `docker-compose build` OR
+- `docker-compose up --build`
+
+#### Other
+
+All other files are found in: `/docker/OpenResty-Orthanc-Keycloak/`
+
+| Service           | Configuration                                    | Docs                                        |
+| ----------------- | ------------------------------------------------ | ------------------------------------------- |
+| OHIF Viewer       | [dockerfile][dockerfile] / [config.js][config]   | You're reading them now!                    |
+| OpenResty (Nginx) | [`/nginx.conf`][config-nginx]                    | [lua-resty-openidc][lua-resty-openidc-docs] |
+| Orthanc           | [`/orthanc.json`][config-orthanc]                | [Here][orthanc-docs]                        |
+| Keycloak          | [`/ohif-keycloak-realm.json`][config-keycloak]\* |                                             |
+
+- \* These are the seed values for Keycloak. They can be manually updated at
+  `http://127.0.0.1/auth/admin`
+
+#### Keycloak Themeing
+
+The `Login` screen for the `ohif-viewer` client is using a Custom Keycloak
+theme. You can find the source files for it in
+`/docker/OpenResty-Orthanc-Keycloak/volumes/keycloak-themes/`. You can see how
+we add it to Keycloak in the `docker-compose` file, and you can read up on how
+to leverage custom themes in
+[Keycloak's own docs](https://www.keycloak.org/docs/latest/server_development/index.html#_themes).
+
+| Default Theme                                                          | OHIF Theme                                                       |
+| ---------------------------------------------------------------------- | ---------------------------------------------------------------- |
+| ![Keycloak Default Theme](../../assets/img/keycloak-default-theme.png) | ![Keycloak OHIF Theme](../../assets/img/keycloak-ohif-theme.png) |
+
+## Next Steps
+
+### Deploying to Production
+
+While these configuration and docker-compose files model an environment suitable
+for production, they are not easy to deploy "as is". You can either:
+
+- Manually recreate this environment and deploy built application files **OR**
+- Deploy to a cloud kubernetes provider like
+  [Digital Ocean](https://www.digitalocean.com/products/kubernetes/) **OR**
+  - [See a full list of cloud providers here](https://landscape.cncf.io/category=cloud&format=card-mode&grouping=category)
+- Find and follow your preferred provider's guide on setting up
+  [swarms and stacks](https://docs.docker.com/get-started/)
+
+### Adding SSL
+
+Adding SSL registration and renewal for your domain with Let's Encrypt that
+terminates at Nginx is an incredibly important step toward securing your data.
+Here are some resources, specific to this setup, that may be helpful:
+
+- [lua-resty-auto-ssl](https://github.com/GUI/lua-resty-auto-ssl)
+- [Let's Encrypt + Nginx](https://www.nginx.com/blog/using-free-ssltls-certificates-from-lets-encrypt-with-nginx/)
+
+While we terminate SSL at Nginx, it may be worth using self signed certificates
+for communication between services.
+
+- [SSL Termination for TCP Upstream Servers](https://docs.nginx.com/nginx/admin-guide/security-controls/terminating-ssl-tcp/)
+
+### Use PostgresSQL w/ Orthanc
+
+Orthanc can handle a large amount of data and requests, but if you find that
+requests start to slow as you add more and more studies, you may want to
+configure your Orthanc instance to use PostgresSQL. Instructions on how to do
+that can be found in the
+[`Orthanc Server Book`](http://book.orthanc-server.com/users/docker.html), under
+"PostgreSQL and Orthanc inside Docker"
+
+### Improving This Guide
+
+Here are some improvements this guide would benefit from, and that we would be
+more than happy to accept Pull Requests for:
+
+- SSL Support
+- Complete configuration with `.env` file (or something similar)
+- Keycloak Theme improvements
+- Any security issues
+- One-click deploy to a cloud provider
+
+## Resources
+
+### Misc. Helpful Commands
+
+_Check if `nginx.conf` is valid:_
+
+```bash
+docker run --rm -t -a stdout --name my-openresty -v $PWD/config/:/usr/local/openresty/nginx/conf/:ro openresty/openresty:alpine-fat openresty -c /usr/local/openresty/nginx/conf/nginx.conf -t
+```
+
+_Interact w/ running container:_
+
+`docker exec -it CONTAINER_NAME bash`
+
+_List running containers:_
+
+`docker ps`
+
+_Clear Keycloak DB so you can re-seed values:_
+
+- `docker volume prune` OR
+- `docker volume ls` and `docker volume rm VOLUME_NAME VOLUME_NAME`
+
+### Referenced Articles
+
+The inspiration for our setup was driven largely by these articles:
+
+- [Securing Nginx with Keycloak](https://edhull.co.uk/blog/2018-06-06/keycloak-nginx)
+- [Authenticating Reverse Proxy with Keycloak](https://eclipsesource.com/blogs/2018/01/11/authenticating-reverse-proxy-with-keycloak/)
+- [Securing APIs with Kong and Keycloak](https://www.jerney.io/secure-apis-kong-keycloak-1/)
+
+For more documentation on the software we've chosen to use, you may find the
+following resources helpful:
+
+- [Orthanc for Docker](http://book.orthanc-server.com/users/docker.html)
+- [OpenResty Guide](http://www.staticshin.com/programming/definitely-an-open-resty-guide/)
+- [Lua Ngx API](https://openresty-reference.readthedocs.io/en/latest/Lua_Nginx_API/)
+- [Auth0: Picking a Grant Type](https://auth0.com/docs/api-auth/which-oauth-flow-to-use)
+
+We chose to use a generic OpenID Connect library on the client, but it's worth
+noting that Keycloak comes packaged with its own:
+
+- [redux-oidc](https://github.com/maxmantz/redux-oidc) (Which wraps
+  [oidc-client-js](https://github.com/IdentityModel/oidc-client-js/wiki))
+- [Keycloak JavaScript Adapter](https://www.keycloak.org/docs/latest/securing_apps/index.html#_javascript_adapter)
+
+If you're not already drowning in links, here are some good security resources
+for OAuth:
+
+- [Diagrams of OpenID Connect Flows](https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660)
+- [KeyCloak: OpenID Connect Flows](https://www.keycloak.org/docs/latest/securing_apps/index.html#authorization-code)
+  - [Good description on SSO Protocols](https://www.keycloak.org/docs/2.5/server_admin/topics/sso-protocols/oidc.html)
+
+For a different take on this setup, check out the repository one of our
+community members put together:
+
+- [mjstealey/ohif-orthanc-dimse-docker](https://github.com/mjstealey/ohif-orthanc-dimse-docker)
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+<!-- DOCS -->
+[orthanc-docs]: http://book.orthanc-server.com/users/configuration.html#configuration
+[lua-resty-openidc-docs]: https://github.com/zmartzone/lua-resty-openidc
+<!-- SRC -->
+[config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/src/config.js
+[dockerfile]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
+[config-nginx]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
+[config-orthanc]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
+[config-keycloak]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
+<!-- prettier-ignore-end -->

docs/latest/deployment/security.md

@@ -1 +0,0 @@
-# Security

docs/latest/essentials/architecture.md

@@ -1,15 +0,0 @@
-# Architecture
-
-The ohif-viewer package provides two different build processes:
-
-# create-react-app
-
-> [create-react-app](https://github.com/facebook/create-react-app) provides pre-configured build process for developing front-end applications with [React](https://reactjs.org/).
-
-The ohif-viewer package can be run as a create-react-app application. This is useful for development, debugging, or evolving ohif-viewer into your own custom imaging application.
-
-# Rollup
-
-> [Rollup](https://rollupjs.org/guide/en) is a module bundler for JavaScript. It uses the new standardized format for code modules included in the ES6 revision of JavaScript.
-
-The ohif-viewer package can be built with Rollup to provide a set of React components which can be dropped into a larger application. Specifically, the ohif-viewer package provides a React component named `OHIFViewer` which is the entire viewer, configurable via React `props`. This is useful for including the OHIF Viewer in a larger web application, as the entire application can be provided via a `<script>` tag with no build process required.

docs/latest/essentials/configuration.md

@@ -1 +1,56 @@
-# Configuration
+# Configuration
+
+> This step assumes you have an imaging archive. If you need assistance setting
+> one up, check out the [`Data Source` Guide](./data-source.md) or a deployment
+> recipe that contains an open source Image Archive
+
+## How it Works
+
+The configuration for our project is in the `/public/config` directory. Our
+build process knows which configuration file to use based on the `APP_CONFIG`
+environment variable. By default, its value is
+[`default.js`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js).
+When we build, the `%APP_CONFIG%` value in
+our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/index.html)
+file is substituted for the correct configuration file's name. This sets the
+`window.config` equal to our configuration file's value.
+
+## How do I configure my project?
+
+The simplest way is to update the existing default config:
+
+_/public/config/default.js_
+
+```js
+window.config = {
+  routerBasename: '/',
+  servers: {
+    dicomWeb: [
+      {
+        name: 'DCM4CHEE',
+        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        qidoSupportsIncludeField: true,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+        requestOptions: {
+          requestFromBrowser: true,
+        },
+      },
+    ],
+  },
+};
+```
+
+You can also create a new config file and specify its path relative to the build
+output's root by setting the `APP_CONFIG` environment variable. You can set the
+value of this environment variable a few different ways:
+
+- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
+- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
+- Using the `cross-env` package in an npm script:
+  - `"build": "cross-env APP_CONFIG=config/my-config.js react-scripts build"`
+
+After updating the configuration, `yarn run build:web` to generate updated build
+output.

docs/latest/essentials/data-source.md

@@ -0,0 +1,159 @@
+# Data Source
+
+After following the steps outlined in [Getting Started](./getting-started.md),
+you'll notice that the OHIF Viewer has data for several studies and their
+images. You didn't add this data, so where is it coming from?
+
+By default, the viewer is configured to connect to a remote server hosted by the
+nice folks over at [dcmjs.org][dcmjs-org]. While convenient for getting started,
+the time may come when you want to develop using your own data either locally or
+remotely.
+
+## Set up a local DICOM server
+
+> ATTENTION! Already have a remote or local server? Skip to the
+> [configuration section](#configuration-learn-more) below.
+
+While the OHIF Viewer can work with any data source, the easiest to configure
+are the ones that follow the [DICOMWeb][dicom-web] spec.
+
+1. Choose and install an Image Archive
+2. Upload data to your archive (e.g. with DCMTK's [storescu][storescu] or your
+   archive's web interface)
+3. Keep the server running
+
+For our purposes, we will be using `Orthanc`, but you can see a list of
+[other Open Source options](#open-source-dicom-image-archives) below.
+
+### Requirements
+
+- Docker
+  - [Docker for Mac](https://docs.docker.com/docker-for-mac/)
+  - [Docker for Windows (recommended)](https://docs.docker.com/docker-for-windows/)
+  - [Docker Toolbox for Windows](https://docs.docker.com/toolbox/toolbox_install_windows/)
+
+_Not sure if you have `docker` installed already? Try running `docker --version`
+in command prompt or terminal_
+
+> If you are using `Docker Toolbox` you need to change the _proxy_ parameter in
+> _package.json_ to http://192.168.99.100:8042 or the ip docker-machine ip
+> throws. This is the value [`react-scripts`][react-proxy] uses to proxy
+> requests
+
+### Running Orthanc
+
+_Start Orthanc:_
+
+```bash
+# Runs orthanc so long as window remains open
+yarn run orthanc:up
+```
+
+_Upload your first Study:_
+
+1. Navigate to [Orthanc's web interface](http://localhost:8899) at
+   `http://localhost:8899` in a web browser.
+2. In the top right corner, click "Upload"
+3. Click "Select files to upload..." and select one or more DICOM files
+4. Click "Start the upload"
+
+#### Orthanc: Learn More
+
+You can see the `docker-compose.yml` file this command runs at
+[`<project-root>/platform/viewer/.recipes/Nginx-Orthanc/`](https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes/Nginx-Orthanc),
+and more on Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
+
+### Connecting to Orthanc
+
+Now that we have a local Orthanc instance up and running, we need to configure
+our web application to connect to it. Open a new terminal window, navigate to
+this project's root directory, and run:
+
+```bash
+# If you haven't already, restore dependencies
+yarn install
+
+# Run our dev command, but with the local orthanc config
+yarn run dev:orthanc
+```
+
+#### Configuration: Learn More
+
+> For more configuration fun, check out the
+> [Essentials Configuration](./configuration.md) guide.
+
+Let's take a look at what's going on under the hood here. `yarn run dev:orthanc`
+is running the `dev:orthanc` script in our project's `package.json`. That script
+is:
+
+```js
+cross-env PORT=5000 APP_CONFIG=config/docker_nginx-orthanc.js react-scripts start
+```
+
+- `cross-env` sets two environment variables
+  - PORT: 5000
+  - APP_CONFIG: `config/docker_nginx-orthanc.js`
+- `react-scripts` runs it's `start` script. This is [the de-facto
+  way][cra-start] to run a "Create React App" in development mode.
+
+The `APP_CONFIG` value tells our app which file to load on to `window.config`.
+By default, our app uses the file at `<project-root>/public/config/default.js`.
+Here is what that configuration looks like:
+
+```js
+window.config = {
+  routerBasename: '/',
+  servers: {
+    dicomWeb: [
+      {
+        name: 'Orthanc',
+        wadoUriRoot: 'http://localhost:8899/wado',
+        qidoRoot: 'http://localhost:8899/dicom-web',
+        wadoRoot: 'http://localhost:8899/dicom-web',
+        qidoSupportsIncludeField: false,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+      },
+    ],
+  },
+};
+```
+
+To learn more about how you can configure the OHIF Viewer, check out our
+[Configuration Guide](./configuration.md).
+
+## Open Source DICOM Image Archives
+
+Our example uses `Orthanc`, but there are a lot of options available to you.
+Here are some of the more popular ones:
+
+| Archive                                       | Installation                       |
+| --------------------------------------------- | ---------------------------------- |
+| [DCM4CHEE Archive 5.x][dcm4chee]              | [W/ Docker][dcm4chee-docker]       |
+| [Orthanc][orthanc]                            | [W/ Docker][orthanc-docker]        |
+| [DICOMcloud][dicomcloud] (**DICOM Web only**) | [Installation][dicomcloud-install] |
+| [OsiriX][osirix] (**Mac OSX only**)           | Desktop Client                     |
+| [Horos][horos] (**Mac OSX only**)             | Desktop Client                     |
+
+_Feel free to make a Pull Request if you want to add to this list._
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[dcmjs-org]: https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado
+[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
+[storescu]: http://support.dcmtk.org/docs/storescu.html
+[cra-start]: https://github.com/facebook/create-react-app#npm-start-or-yarn-start
+[react-proxy]: https://facebook.github.io/create-react-app/docs/proxying-api-requests-in-development#configuring-the-proxy-manually
+<!-- Archives -->
+[dcm4chee]: https://github.com/dcm4che/dcm4chee-arc-light
+[dcm4chee-docker]: https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker
+[orthanc]: https://www.orthanc-server.com/
+[orthanc-docker]: http://book.orthanc-server.com/users/docker.html
+[dicomcloud]: https://github.com/DICOMcloud/DICOMcloud
+[dicomcloud-install]: https://github.com/DICOMcloud/DICOMcloud#running-the-code
+[osirix]: http://www.osirix-viewer.com/
+[horos]: https://www.horosproject.org/
+<!-- prettier-ignore-end -->

docs/latest/essentials/getting-started.md

@@ -1,87 +1,115 @@
 # Getting Started
 
-## Getting the Code
+## Setup
 
-Either clone the repository using Git:
+### Fork & Clone
 
-````bash
-git clone git@github.com:OHIF/Viewers.git
-````
+If you intend to contribute back changes, or if you would like to pull updates
+we make to the OHIF Viewer, then follow these steps:
 
-or [Download the latest Master as a ZIP File](https://github.com/OHIF/Viewers/archive/master.zip).
+- [Fork][fork-a-repo] the [OHIF/Viewers][ohif-viewers-repo] repository
+- [Create a local clone][clone-a-repo] of your fork
+  - `git clone https://github.com/YOUR-USERNAME/Viewers`
+- Add OHIF/Viewers as a [remote repository][add-remote-repo] labled `upstream`
+  - Navigate to the cloned project's directory
+  - `git remote add upstream https://github.com/OHIF/Viewers.git`
 
-## Test the archive against our public DICOM server
+With this setup, you can now [sync your fork][sync-changes] to keep it
+up-to-date with the upstream (original) repository. This is called a "Triangular
+Workflow" and is common for Open Source projects. The GitHub blog has a [good
+graphic that illustrates this setup][triangular-workflow].
 
-## Set up and test the OHIF Viewer application:
-1. [Install Node.js](https://nodejs.org/en/)
-2. Open a new terminal tab in the `ohif-viewer` directory and install all dependency packages via NPM
+### Private
 
-  ````bash
-  cd Packages-react/ohif-viewer
-  npm install
-  ````
+Alternatively, if you intend to use the OHIF Viewer as a starting point, and you
+aren't as concerned with syncing updates, then follow these steps:
 
-3. Run the application
+1. Navigate to the [OHIF/Viewers/tree/react][ohif-viewers-react-repo] repository
+   and branch
+2. Click `Clone or download`, and then `Download ZIP`
+3. Use the contents of the `.zip` file as a starting point for your viewer
 
-  ````bash
-  npm start
-  ````
+> NOTE: It is still possible to sync changes using this approach. However,
+> submitting pull requests for fixes and features are best done with the
+> separate, forked repository setup described in "Fork & Clone"
 
-Note: This will connect to our public DICOMWeb server so you can verify your installation. Follow the next section to connect to your own local or remote DICOMWeb server.
+## Developing
 
-4. Launch the OHIF Viewer Study List by visiting [http://localhost:3000/](http://localhost:3000/) in a web browser.
+### Requirements
 
-**If everything is working correctly, you should see the studies from our public archive when you visit the Study List.**
+- [Node.js & NPM](https://nodejs.org/en/)
+- [Yarn](https://yarnpkg.com/en/)
 
-5. Double-click on a Study in the Study List to launch it in the Viewer
+### Kick the tires
 
-  **If everything is working correctly, you should see your study load into the Viewer.**
+Navigate to the root of the project's directory in your terminal and run the
+following commands:
 
-## Set up a local DICOM server
+```bash
+# Restore dependencies
+yarn install
 
-1. Choose and install an Image Archive
-2. Upload some data into your archive (e.g. with DCMTK's [storescu](http://support.dcmtk.org/docs/storescu.html) or your archive's web interface)
-3. Keep the server running
+# Start local development server
+yarn start
+```
 
-#### Open Source DICOM Image Archive Options
+You should see the following output:
 
-Archive                                    | Installation
--------------------------------------------|
-[DCM4CHEE Archive 5.x](https://github.com/dcm4che/dcm4chee-arc-light) | [Installation with Docker](https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker)
-[Orthanc](https://www.orthanc-server.com/) | [Installation with Docker](http://book.orthanc-server.com/users/docker.html)
-[DICOMcloud](https://github.com/DICOMcloud/DICOMcloud) (**DICOM Web only**)| [Installation](https://github.com/DICOMcloud/DICOMcloud#running-the-code)
-[OsiriX](http://www.osirix-viewer.com/) (**Mac OSX only**) |
-[Horos](https://www.horosproject.org/)  (**Mac OSX only**) |
+```bash
+Compiled successfully!
 
-*Feel free to make a Pull Request if you want to add to this list.*
+You can now view ohif-viewer in the browser.
 
-## Set up and test the OHIF Viewer application:
-1. [Install Node.js](https://nodejs.org/en/)
-2. Open a new terminal tab in the `ohif-viewer` directory and install all dependency packages via NPM
+  Local:            http://localhost:5000/
+  On Your Network:  http://10.74.20.83:5000/
 
-  ````bash
-  cd Packages-react/ohif-viewer
-  npm install
-  ````
+Note that the development build is not optimized.
+To create a production build, use yarn build.
+```
 
-3. Run the application using one of the available configuration files.
+### 🎉 Celebrate 🎉
 
-  ````bash
-  REACT_APP_CONFIG=$(cat ../../config-react/ccc.json)
-  npm start
-  ````
+<center>
+  <img alt="development server hosted app" src="/assets/img/loading-study.gif" />
+  <i>Our app, hosted by the development server</i>
+</center>
 
-  This uses the [Custom Environment Variables of Create-React-App](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables) to pass in your configuration. The example above will not work on Windows. Please visit the link to read about how to set environment variables on Windows.
+### Building for Production
 
-4. Launch the OHIF Viewer Study List by visiting [http://localhost:3000/](http://localhost:3000/) in a web browser.
+> More comprehensive guides for building and publishing can be found in our
+> [deployment docs](./../deployment/index.md)
 
-  **If everything is working correctly, you should see the Study List from your archive when you visit the Study List.**
+```bash
+# Build static assets to host a PWA
+yarn run build:web
 
-5. Double-click on a Study in the Study List to launch it in the Viewer
+# Build packaged output
+yarn run build:package
+```
 
-  **If everything is working correctly, you should see your study load into the Viewer.**
+## Next Steps
 
-#### Troubleshooting
-* If you receive a *"No Studies Found"* message and do not see your studies, try changing the Study Date filters to a wider range.
-* If you see a 'Loading' message which never resolves, check your browser JavaScript console inside the Developer Tools to identify any errors.
-* If you see any errors in your server console, check the [Troubleshooting](../troubleshooting.md) page for more in depth advice.
+...
+
+## Troubleshooting
+
+- If you receive a _"No Studies Found"_ message and do not see your studies, try
+  changing the Study Date filters to a wider range.
+- If you see a 'Loading' message which never resolves, check your browser
+  JavaScript console inside the Developer Tools to identify any errors.
+- If you see any errors in your server console, check the
+  [Troubleshooting](./troubleshooting.md) page for more in depth advice.
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[fork-a-repo]: https://help.github.com/en/articles/fork-a-repo
+[clone-a-repo]: https://help.github.com/en/articles/fork-a-repo#step-2-create-a-local-clone-of-your-fork
+[add-remote-repo]: https://help.github.com/en/articles/fork-a-repo#step-3-configure-git-to-sync-your-fork-with-the-original-spoon-knife-repository
+[sync-changes]: https://help.github.com/en/articles/syncing-a-fork
+[triangular-workflow]: https://github.blog/2015-07-29-git-2-5-including-multiple-worktrees-and-triangular-workflows/#improved-support-for-triangular-workflows
+[ohif-viewers-repo]: https://github.com/OHIF/Viewers
+[ohif-viewers-react-repo]: https://github.com/OHIF/Viewers/tree/react
+<!-- prettier-ignore-end -->

docs/latest/essentials/installation.md

@@ -0,0 +1,42 @@
+# Installation
+
+It's important to know that the OHIF Viewer project provides two different build
+processes:
+
+```bash
+# Static Asset output: For deploying PWAs
+yarn run build:web
+
+# Single `.js` script, for embedding viewer into existing apps
+yarn run build:package
+```
+
+## create-react-app (PWA)
+
+> [create-react-app](https://github.com/facebook/create-react-app) provides
+> pre-configured build process for developing front-end applications with
+> [React](https://reactjs.org/).
+
+The ohif-viewer package can be run as a create-react-app application. This is
+useful for development, debugging, or evolving the OHIF Viewer into your own
+custom imaging application.
+
+You can read more about this particular strategy in our
+[Build for Production Deployment Guide](./../deployment/recipes/build-for-production.md)
+
+## Rollup (Packaged Script)
+
+> [Rollup](https://rollupjs.org/guide/en) is a module bundler for JavaScript. It
+> uses the new standardized format for code modules included in the ES6 revision
+> of JavaScript.
+
+The [ohif-viewer](https://www.npmjs.com/package/ohif-viewer) package can be
+built with Rollup to provide a set of React components which can be dropped into
+a larger application. Specifically, the ohif-viewer package provides a React
+component named `OHIFViewer` which is the entire viewer, configurable via React
+`props`. This is useful for including the OHIF Viewer in a larger web
+application, as the entire application can be provided via a `<script>` tag with
+no build process required.
+
+You can read more about this particular strategy in our
+[Embedded Viewer Deployment Guide](./../deployment/recipes/embedded-viewer.md)