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84 Commits
Author SHA1 Message Date
ohif-bot 19bdcbb453 chore(version): Update package versions [skip ci] 2024-04-29 16:49:17 +00:00
ohif-bot 0386c29480 chore(version): version.json [skip ci] 2024-04-29 16:49:07 +00:00
Alireza 1dcdc9dabe feat(v3p8): advanced 3D layouts and 4d data support (#4071) 2024-04-29 12:36:12 -04:00
Alireza feaebd7f61 Merge branch 'release' of github.com:OHIF/Viewers into candidate-3p8-rc-6 2024-04-29 12:16:39 -04:00
ohif-bot 6a8f4b9f38 chore(version): Update package versions [skip ci] 2024-04-29 16:09:24 +00:00
ohif-bot 956fff4e5b chore(version): version.json [skip ci] 2024-04-29 16:09:14 +00:00
Alireza f1a736d193 fix(toolbox): Preserve user-specified tool state and streamline command execution (#4063) 2024-04-29 11:58:03 -04:00
ohif-bot 4784638717 chore(version): Update package versions [skip ci] 2024-04-28 02:01:58 +00:00
ohif-bot 49e82f4756 chore(version): version.json [skip ci] 2024-04-28 02:01:50 +00:00
Ibrahim c09311d3b7 fix(bugs): fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change (#4068) 2024-04-27 21:50:28 -04:00
ohif-bot b4ed80d99b chore(version): Update package versions [skip ci] 2024-04-25 15:57:15 +00:00
ohif-bot c87081d924 chore(version): version.json [skip ci] 2024-04-25 15:57:08 +00:00
Ibrahim f09dfaf911 docs: updates images (#4064) 2024-04-25 11:45:50 -04:00
ohif-bot 11a4ba3c99 chore(version): Update package versions [skip ci] 2024-04-22 19:20:46 +00:00
ohif-bot 56ccb4f7e0 chore(version): version.json [skip ci] 2024-04-22 19:20:37 +00:00
Mateus Freira dos Santos 6ebd2cc7cb fix(viewport-sync): Enable re-sync image slices in a different position when needed (#3984) 2024-04-22 15:08:03 -04:00
ohif-bot 25c01fc66c chore(version): Update package versions [skip ci] 2024-04-22 18:56:10 +00:00
ohif-bot 2ea882e299 chore(version): version.json [skip ci] 2024-04-22 18:56:02 +00:00
Alireza 52a0c59294 fix(viewport-webworker-segmentation): Resolve issues with viewport detection, webworker termination, and segmentation panel layout change (#4059) 2024-04-22 14:43:26 -04:00
Mateus Freira dos Santos 3ec7e51216 fix(vewport): Add missing blendmodes from cornerstonejs (#4055) 2024-04-22 14:33:52 -04:00
ohif-bot 1b366c92ee chore(version): Update package versions [skip ci] 2024-04-22 14:06:09 +00:00
ohif-bot 13d67d90fc chore(version): version.json [skip ci] 2024-04-22 14:06:01 +00:00
Bill Wallace f0ed3fd7b9 fix(hp): Fails to display any layouts in the layout selector if first layout has multiple stages (#4058) 2024-04-22 09:53:10 -04:00
ohif-bot 65d419dd52 chore(version): Update package versions [skip ci] 2024-04-19 19:23:01 +00:00
ohif-bot 4349fc1085 chore(version): version.json [skip ci] 2024-04-19 19:22:53 +00:00
Alireza 8192e348ec feat(tmtv-mode): Add Brush tools and move SUV peak calculation to web worker (#4053) 2024-04-19 15:11:31 -04:00
ohif-bot 8c5ab942b9 chore(version): Update package versions [skip ci] 2024-04-19 03:32:31 +00:00
ohif-bot ab19d9c0a2 chore(version): version.json [skip ci] 2024-04-19 03:32:23 +00:00
Alireza d250d04580 fix(layouts): and fix thumbnail in touch and update migration guide for 3.8 release (#4052) 2024-04-18 23:21:02 -04:00
ohif-bot 28bc8914a8 chore(version): Update package versions [skip ci] 2024-04-18 15:07:19 +00:00
ohif-bot 3952d465dc chore(version): version.json [skip ci] 2024-04-18 15:07:08 +00:00
Pavel Klochkov 1a013909a1 docs(link): Fix wrong link for the components library in the architecture.md (#4045) 2024-04-18 10:53:21 -04:00
ohif-bot 8f42baf36e chore(version): Update package versions [skip ci] 2024-04-18 02:11:12 +00:00
ohif-bot 2633ef7323 chore(version): version.json [skip ci] 2024-04-18 02:11:05 +00:00
Alireza da7c1a5d8c fix(bugs): and replace seriesInstanceUID and seriesInstanceUIDs URL with seriesInstanceUIDs (#4049) 2024-04-17 21:59:47 -04:00
ohif-bot 058da93863 chore(version): Update package versions [skip ci] 2024-04-18 01:58:25 +00:00
ohif-bot bc819409b3 chore(version): version.json [skip ci] 2024-04-18 01:58:17 +00:00
Ibrahim 170bb96983 fix(bugs): enhancements and bug fixes - final (#4048) 2024-04-17 21:47:09 -04:00
ohif-bot c4e6556259 chore(version): Update package versions [skip ci] 2024-04-17 18:54:51 +00:00
ohif-bot ab61cc9b1f chore(version): version.json [skip ci] 2024-04-17 18:54:41 +00:00
Ibrahim 3754c224b4 fix(bugs): enhancements and bug fixes - more (#4043) 2024-04-17 14:42:40 -04:00
ohif-bot d3cdfd8506 chore(version): Update package versions [skip ci] 2024-04-16 15:17:07 +00:00
ohif-bot aa572daa2c chore(version): version.json [skip ci] 2024-04-16 15:16:59 +00:00
Alireza f99a0bfb31 fix(viewport): Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings (#4037) 2024-04-16 11:04:48 -04:00
ohif-bot a6c6fff43a chore(version): Update package versions [skip ci] 2024-04-16 13:13:50 +00:00
ohif-bot e687384933 chore(version): version.json [skip ci] 2024-04-16 13:13:42 +00:00
Ibrahim e80fc6f477 fix(bugs): enhancements and bug fixes (#4036) 2024-04-16 09:01:06 -04:00
ohif-bot 41a8d105f1 chore(version): Update package versions [skip ci] 2024-04-10 17:55:21 +00:00
ohif-bot 60b2f69334 chore(version): version.json [skip ci] 2024-04-10 17:55:12 +00:00
Alireza df49a653be feat(SM): remove SM measurements from measurement panel (#4022) 2024-04-10 13:44:25 -04:00
ohif-bot 77693ddef4 chore(version): Update package versions [skip ci] 2024-04-10 15:45:03 +00:00
ohif-bot 6a757f69d8 chore(version): version.json [skip ci] 2024-04-10 15:44:55 +00:00
Ibrahim 2b83393f91 fix(general): enhancements and bug fixes (#4018) 2024-04-10 11:34:13 -04:00
ohif-bot ac0e1c0a2c chore(version): Update package versions [skip ci] 2024-04-10 15:06:15 +00:00
ohif-bot b0b65c582d chore(version): version.json [skip ci] 2024-04-10 15:06:06 +00:00
Igor Octaviano 4f99244d86 fix(dicom-video): Update get direct func for dicom json to use url if present and fix config argument (#4017) 2024-04-10 10:55:19 -04:00
Mohannad Hussain be9bb06565 docker: Enabled Orthanc's DIMSE port for easier loading of DICOM studies in OpenResty-Orthanc Recipe (#3917) 2024-04-10 10:46:27 -04:00
ohif-bot c7e53bdbf8 chore(version): Update package versions [skip ci] 2024-04-10 14:43:05 +00:00
ohif-bot 7c3d67c2a8 chore(version): version.json [skip ci] 2024-04-10 14:42:57 +00:00
Jorge Lopes e9c30a108e fix(MetaDataProvider): Fix tag in GeneralImageModule (#4000) 2024-04-10 10:31:04 -04:00
ohif-bot 603d5cc53a chore(version): Update package versions [skip ci] 2024-04-10 14:27:17 +00:00
ohif-bot 5cc693d26c chore(version): version.json [skip ci] 2024-04-10 14:27:08 +00:00
Bill Wallace 7fac49b449 fix: Microscopy bulkdata and image retrieve (#3894) 2024-04-10 10:16:09 -04:00
ohif-bot 7014e6ca4a chore(version): Update package versions [skip ci] 2024-04-10 04:15:43 +00:00
ohif-bot 87b68bba4a chore(version): version.json [skip ci] 2024-04-10 04:15:35 +00:00
d57e8bc157 feat(4D): Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode (#3664)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Neil <neil.a.macphee@gmail.com>
2024-04-09 23:57:34 -04:00
ohif-bot dc0b183dd4 chore(version): Update package versions [skip ci] 2024-04-08 13:39:28 +00:00
ohif-bot 06920ab927 chore(version): version.json [skip ci] 2024-04-08 13:39:21 +00:00
Kay Park dc37802ec1 fix : Keycloak docker image source modification (#4015) 2024-04-08 09:28:51 -04:00
ohif-bot 894a227978 chore(version): Update package versions [skip ci] 2024-04-05 10:00:59 +00:00
ohif-bot 1c9fee1bec chore(version): version.json [skip ci] 2024-04-05 10:00:52 +00:00
5645ac1b27 fix(cornerstone-dicom-sr): Freehand SR hydration support (#3996)
Co-authored-by: Ibrahim <93064150+IbrahimCSAE@users.noreply.github.com>
Co-authored-by: IbrahimCSAE <ibrahim.mdev@gmail.com>
2024-04-05 05:42:43 -04:00
ohif-bot df32a05a4d chore(version): Update package versions [skip ci] 2023-10-11 16:59:05 +00:00
ohif-bot e205bf5c4e chore(version): version.json [skip ci] 2023-10-11 16:58:56 +00:00
Alireza 5ddf8a1602 feat(v3p7): segmentation mode and cloud server configuration (#3720) 2023-10-11 12:49:12 -04:00
Alireza 83fccad46b Merge branch 'release' of github.com:OHIF/Viewers into candidate-3p7-rc-5 2023-10-11 12:18:10 -04:00
ohif-bot 72ec0bffb5 chore(version): Update package versions [skip ci] 2023-06-07 20:01:22 +00:00
ohif-bot 82c6c3c353 chore(version): version.json [skip ci] 2023-06-07 20:01:18 +00:00
Alireza 1d38fe30a4 feat(app): modal headers and fix storybook (#3460) 2023-06-07 15:54:08 -04:00
Alireza 666964b6d7 Merge branch 'release' of github.com:OHIF/Viewers into release-fore-newsletter 2023-06-07 13:26:13 -04:00
ohif-bot fa4ee5c559 chore(version): Update package versions [skip ci] 2023-06-07 00:14:02 +00:00
ohif-bot cd58560e9c chore(version): version.json [skip ci] 2023-06-07 00:13:59 +00:00
Alireza 16afa740b6 feat(app): change ohif viewer to ohif app (#3451) 2023-06-06 20:06:31 -04:00
Alireza 6715ad9bd6 chore(build): try to build demo and docs 2023-06-01 08:13:36 -04:00
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@@ -1,25 +0,0 @@
# ABOUT:
# https://docs.codecov.io/docs/codecov-yaml
#
#
# COMMIT STATUS:
# https://docs.codecov.io/docs/commit-status
coverage:
status:
project:
default:
threshold: 0.5%
core:
flags: core
threshold: 0.5%
viewer:
flags: viewer
threshold: 0.5%
patch: off
flags:
core:
paths:
- platform/core
viewer:
paths:
- platform/app
+1
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@@ -24,6 +24,7 @@ yarn-error.log
.DS_Store
.env
*.code-workspace
.directory
# Common Example Data Directories
sampledata/
+257
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@@ -3,6 +3,263 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
# [3.7.0](https://github.com/OHIF/Viewers/compare/v3.7.0-beta.110...v3.7.0) (2023-10-11)
# [3.6.0](https://github.com/OHIF/Viewers/compare/v3.6.0-beta.3...v3.6.0) (2023-06-07)
# [3.5.0](https://github.com/OHIF/Viewers/compare/v3.5.0-beta.1...v3.5.0) (2023-06-07)
### Features
* **app:** change ohif viewer to ohif app ([#3451](https://github.com/OHIF/Viewers/issues/3451)) ([16afa74](https://github.com/OHIF/Viewers/commit/16afa740b60b31037100444ef9311b80ffea2f67))
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
### Bug Fixes
* **toolbox:** Preserve user-specified tool state and streamline command execution ([#4063](https://github.com/OHIF/Viewers/issues/4063)) ([f1a736d](https://github.com/OHIF/Viewers/commit/f1a736d1934733a434cb87b2c284907a3122403f))
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
### Bug Fixes
* **bugs:** fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change ([#4068](https://github.com/OHIF/Viewers/issues/4068)) ([c09311d](https://github.com/OHIF/Viewers/commit/c09311d3b7df05fcd00a9f36a7233e9d7e5589d0))
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
**Note:** Version bump only for package ohif-monorepo-root
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
### Bug Fixes
* **viewport-sync:** Enable re-sync image slices in a different position when needed ([#3984](https://github.com/OHIF/Viewers/issues/3984)) ([6ebd2cc](https://github.com/OHIF/Viewers/commit/6ebd2cc7cb70cd88fd01dc1e516077f27b201943))
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
### Bug Fixes
* **vewport:** Add missing blendmodes from cornerstonejs ([#4055](https://github.com/OHIF/Viewers/issues/4055)) ([3ec7e51](https://github.com/OHIF/Viewers/commit/3ec7e512169a07506388902acb5b2c118093fa50))
* **viewport-webworker-segmentation:** Resolve issues with viewport detection, webworker termination, and segmentation panel layout change ([#4059](https://github.com/OHIF/Viewers/issues/4059)) ([52a0c59](https://github.com/OHIF/Viewers/commit/52a0c59294a4161fcca0a6708855549034849951))
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
### Bug Fixes
* **hp:** Fails to display any layouts in the layout selector if first layout has multiple stages ([#4058](https://github.com/OHIF/Viewers/issues/4058)) ([f0ed3fd](https://github.com/OHIF/Viewers/commit/f0ed3fd7b99b0e4e00b261ceb9888ba94726719c))
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
### Features
* **tmtv-mode:** Add Brush tools and move SUV peak calculation to web worker ([#4053](https://github.com/OHIF/Viewers/issues/4053)) ([8192e34](https://github.com/OHIF/Viewers/commit/8192e348eca993fec331d4963efe88f9a730eceb))
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
### Bug Fixes
* **layouts:** and fix thumbnail in touch and update migration guide for 3.8 release ([#4052](https://github.com/OHIF/Viewers/issues/4052)) ([d250d04](https://github.com/OHIF/Viewers/commit/d250d04580883446fcb8d748b2a97c5c198922af))
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
**Note:** Version bump only for package ohif-monorepo-root
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
### Bug Fixes
* **bugs:** and replace seriesInstanceUID and seriesInstanceUIDs URL with seriesInstanceUIDs ([#4049](https://github.com/OHIF/Viewers/issues/4049)) ([da7c1a5](https://github.com/OHIF/Viewers/commit/da7c1a5d8c54bfa1d3f97bbc500386bf76e7fd9d))
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
### Bug Fixes
* **bugs:** enhancements and bug fixes - final ([#4048](https://github.com/OHIF/Viewers/issues/4048)) ([170bb96](https://github.com/OHIF/Viewers/commit/170bb96983082c39b22b7352e0c54aacf3e73b02))
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
### Bug Fixes
* **bugs:** enhancements and bug fixes - more ([#4043](https://github.com/OHIF/Viewers/issues/4043)) ([3754c22](https://github.com/OHIF/Viewers/commit/3754c224b4dab28182adb0a41e37d890942144d8))
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
### Bug Fixes
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
### Bug Fixes
* **bugs:** enhancements and bug fixes ([#4036](https://github.com/OHIF/Viewers/issues/4036)) ([e80fc6f](https://github.com/OHIF/Viewers/commit/e80fc6f47708e1d6b1a1e1de438196a4b74ec637))
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
### Features
* **SM:** remove SM measurements from measurement panel ([#4022](https://github.com/OHIF/Viewers/issues/4022)) ([df49a65](https://github.com/OHIF/Viewers/commit/df49a653be61a93f6e9fb3663aabe9775c31fd13))
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
### Bug Fixes
* **general:** enhancements and bug fixes ([#4018](https://github.com/OHIF/Viewers/issues/4018)) ([2b83393](https://github.com/OHIF/Viewers/commit/2b83393f91cb16ea06821d79d14ff60f80c29c90))
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
### Bug Fixes
* **dicom-video:** Update get direct func for dicom json to use url if present and fix config argument ([#4017](https://github.com/OHIF/Viewers/issues/4017)) ([4f99244](https://github.com/OHIF/Viewers/commit/4f99244d864427d69be6f863cb7a6a78411adb12))
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
### Bug Fixes
* **MetaDataProvider:** Fix tag in GeneralImageModule ([#4000](https://github.com/OHIF/Viewers/issues/4000)) ([e9c30a1](https://github.com/OHIF/Viewers/commit/e9c30a108e2dd14a8b137b81e5b832cc167bc3d1))
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
### Bug Fixes
* Microscopy bulkdata and image retrieve ([#3894](https://github.com/OHIF/Viewers/issues/3894)) ([7fac49b](https://github.com/OHIF/Viewers/commit/7fac49b4492b4bd5e9ece8e2e2b0fa2faa840d7f))
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
### Features
* **4D:** Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode ([#3664](https://github.com/OHIF/Viewers/issues/3664)) ([d57e8bc](https://github.com/OHIF/Viewers/commit/d57e8bc1571c6da4effaa492ee2d162c552365a2))
# [3.8.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.72...v3.8.0-beta.73) (2024-04-08)
**Note:** Version bump only for package ohif-monorepo-root
# [3.8.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.71...v3.8.0-beta.72) (2024-04-05)
### Bug Fixes
* **cornerstone-dicom-sr:** Freehand SR hydration support ([#3996](https://github.com/OHIF/Viewers/issues/3996)) ([5645ac1](https://github.com/OHIF/Viewers/commit/5645ac1b271e1ed8c57f5d71100809362447267e))
# [3.8.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.70...v3.8.0-beta.71) (2024-04-05)
+9 -6
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@@ -41,12 +41,15 @@ provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF
| | | |
| :-: | :--- | :--- |
| <img src="platform/docs/docs/assets/img/demo-measurements.jpg" alt="Measurement tracking" width="350"/> | Measurement Tracking | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5) |
| <img src="platform/docs/docs/assets/img/demo-segmentation.png" alt="Segmentations" width="350"/> | Labelmap Segmentations | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.12.2.1107.5.2.32.35162.30000015050317233592200000046) |
| <img src="platform/docs/docs/assets/img/demo-ptct.png" alt="Hanging Protocols" width="350"/> | Fusion and Custom Hanging protocols | [Demo](https://viewer.ohif.org/tmtv?StudyInstanceUIDs=1.3.6.1.4.1.14519.5.2.1.7009.2403.334240657131972136850343327463) |
| <img src="platform/docs/docs/assets/img/demo-microscopy.png" alt="Microscopy" width="350"/> | Slide Microscopy | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.275741864483510678566144889372061815320) |
| <img src="platform/docs/docs/assets/img/demo-volumeRendering.png" alt="Volume Rendering" width="350"/> | Volume Rendering | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5&hangingprotocolId=mprAnd3DVolumeViewport) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-measurements.webp?raw=true" alt="Measurement tracking" width="350"/> | Measurement Tracking | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-segmentation.webp?raw=true" alt="Segmentations" width="350"/> | Labelmap Segmentations | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.12.2.1107.5.2.32.35162.30000015050317233592200000046) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-ptct.webp?raw=true" alt="Hanging Protocols" width="350"/> | Fusion and Custom Hanging protocols | [Demo](https://viewer.ohif.org/tmtv?StudyInstanceUIDs=1.3.6.1.4.1.14519.5.2.1.7009.2403.334240657131972136850343327463) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-volume-rendering.webp?raw=true" alt="Volume Rendering" width="350"/> | Volume Rendering | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5&hangingprotocolId=mprAnd3DVolumeViewport) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-pdf.webp?raw=true" alt="PDF" width="350"/> | PDF | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.317377619501274872606137091638706705333) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-rtstruct.webp?raw=true" alt="RTSTRUCT" width="350"/> | RT STRUCT | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.5962.99.1.2968617883.1314880426.1493322302363.3.0) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-4d.webp?raw=true" alt="4D" width="350"/> | 4D | [Demo](https://viewer.ohif.org/dynamic-volume?StudyInstanceUIDs=2.25.232704420736447710317909004159492840763) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-video.webp?raw=true" alt="VIDEO" width="350"/> | Video | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.96975534054447904995905761963464388233) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/microscopy.webp?raw=true" alt="microscopy" width="350"/> | Slide Microscopy | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.141277760791347900862109212450152067508) |
## About
+1 -1
View File
@@ -1 +1 @@
cea27d438d1de2c1ec90cbaefdc2b31a1d9980a1
1dcdc9dabe9d4179f223912d6adc00bc95629a85
@@ -3,6 +3,196 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
### Bug Fixes
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
### Bug Fixes
* **bugs:** enhancements and bug fixes ([#4036](https://github.com/OHIF/Viewers/issues/4036)) ([e80fc6f](https://github.com/OHIF/Viewers/commit/e80fc6f47708e1d6b1a1e1de438196a4b74ec637))
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.72...v3.8.0-beta.73) (2024-04-08)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.71...v3.8.0-beta.72) (2024-04-05)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.8.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.70...v3.8.0-beta.71) (2024-04-05)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+5 -5
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-rt",
"version": "3.8.0-beta.71",
"version": "3.8.0",
"description": "DICOM RT read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,10 +33,10 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.8.0-beta.71",
"@ohif/extension-cornerstone": "3.8.0-beta.71",
"@ohif/extension-default": "3.8.0-beta.71",
"@ohif/i18n": "3.8.0-beta.71",
"@ohif/core": "3.8.0",
"@ohif/extension-cornerstone": "3.8.0",
"@ohif/extension-default": "3.8.0",
"@ohif/i18n": "3.8.0",
"prop-types": "^15.6.2",
"react": "^17.0.2",
"react-dom": "^17.0.2",
@@ -66,6 +66,11 @@ function _askHydrate(uiViewportDialogService, viewportId) {
uiViewportDialogService.hide();
resolve(RESPONSE.CANCEL);
},
onKeyPress: event => {
if (event.key === 'Enter') {
onSubmit(RESPONSE.HYDRATE_SEG);
}
},
});
});
}
@@ -116,7 +116,10 @@ function OHIFCornerstoneRTViewport(props) {
orientation: viewportOptions.orientation,
viewportId: viewportOptions.viewportId,
}}
onElementEnabled={onElementEnabled}
onElementEnabled={evt => {
props.onElementEnabled?.(evt);
onElementEnabled(evt);
}}
onElementDisabled={onElementDisabled}
></Component>
);
@@ -3,6 +3,223 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
### Bug Fixes
* **toolbox:** Preserve user-specified tool state and streamline command execution ([#4063](https://github.com/OHIF/Viewers/issues/4063)) ([f1a736d](https://github.com/OHIF/Viewers/commit/f1a736d1934733a434cb87b2c284907a3122403f))
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
### Bug Fixes
* **bugs:** fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change ([#4068](https://github.com/OHIF/Viewers/issues/4068)) ([c09311d](https://github.com/OHIF/Viewers/commit/c09311d3b7df05fcd00a9f36a7233e9d7e5589d0))
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
### Bug Fixes
* **viewport-webworker-segmentation:** Resolve issues with viewport detection, webworker termination, and segmentation panel layout change ([#4059](https://github.com/OHIF/Viewers/issues/4059)) ([52a0c59](https://github.com/OHIF/Viewers/commit/52a0c59294a4161fcca0a6708855549034849951))
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
### Features
* **tmtv-mode:** Add Brush tools and move SUV peak calculation to web worker ([#4053](https://github.com/OHIF/Viewers/issues/4053)) ([8192e34](https://github.com/OHIF/Viewers/commit/8192e348eca993fec331d4963efe88f9a730eceb))
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
### Bug Fixes
* **layouts:** and fix thumbnail in touch and update migration guide for 3.8 release ([#4052](https://github.com/OHIF/Viewers/issues/4052)) ([d250d04](https://github.com/OHIF/Viewers/commit/d250d04580883446fcb8d748b2a97c5c198922af))
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
### Bug Fixes
* **bugs:** enhancements and bug fixes - final ([#4048](https://github.com/OHIF/Viewers/issues/4048)) ([170bb96](https://github.com/OHIF/Viewers/commit/170bb96983082c39b22b7352e0c54aacf3e73b02))
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
### Bug Fixes
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
### Bug Fixes
* **bugs:** enhancements and bug fixes ([#4036](https://github.com/OHIF/Viewers/issues/4036)) ([e80fc6f](https://github.com/OHIF/Viewers/commit/e80fc6f47708e1d6b1a1e1de438196a4b74ec637))
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
### Features
* **SM:** remove SM measurements from measurement panel ([#4022](https://github.com/OHIF/Viewers/issues/4022)) ([df49a65](https://github.com/OHIF/Viewers/commit/df49a653be61a93f6e9fb3663aabe9775c31fd13))
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
### Features
* **4D:** Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode ([#3664](https://github.com/OHIF/Viewers/issues/3664)) ([d57e8bc](https://github.com/OHIF/Viewers/commit/d57e8bc1571c6da4effaa492ee2d162c552365a2))
# [3.8.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.72...v3.8.0-beta.73) (2024-04-08)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.8.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.71...v3.8.0-beta.72) (2024-04-05)
### Bug Fixes
* **cornerstone-dicom-sr:** Freehand SR hydration support ([#3996](https://github.com/OHIF/Viewers/issues/3996)) ([5645ac1](https://github.com/OHIF/Viewers/commit/5645ac1b271e1ed8c57f5d71100809362447267e))
# [3.8.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.70...v3.8.0-beta.71) (2024-04-05)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-seg",
"version": "3.8.0-beta.71",
"version": "3.8.0",
"description": "DICOM SEG read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,10 +33,10 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.8.0-beta.71",
"@ohif/extension-cornerstone": "3.8.0-beta.71",
"@ohif/extension-default": "3.8.0-beta.71",
"@ohif/i18n": "3.8.0-beta.71",
"@ohif/core": "3.8.0",
"@ohif/extension-cornerstone": "3.8.0",
"@ohif/extension-default": "3.8.0",
"@ohif/i18n": "3.8.0",
"prop-types": "^15.6.2",
"react": "^17.0.2",
"react-dom": "^17.0.2",
@@ -46,9 +46,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.67.0",
"@cornerstonejs/core": "^1.67.0",
"@kitware/vtk.js": "29.7.0",
"@cornerstonejs/adapters": "^1.70.14",
"@cornerstonejs/core": "^1.70.14",
"@kitware/vtk.js": "30.4.1",
"react-color": "^2.19.3"
}
}
@@ -434,30 +434,6 @@ const commandsModule = ({
});
});
},
toggleThresholdRangeAndDynamic() {
const toolGroupIds = toolGroupService.getToolGroupIds();
if (!toolGroupIds) {
return;
}
toolGroupIds.forEach(toolGroupId => {
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
const brushInstances = segmentationUtils.getBrushToolInstances(toolGroup.id);
brushInstances.forEach(({ configuration }) => {
const { activeStrategy, strategySpecificConfiguration } = configuration;
if (activeStrategy.startsWith('THRESHOLD')) {
const thresholdConfig = strategySpecificConfiguration.THRESHOLD;
if (thresholdConfig) {
thresholdConfig.isDynamic = !thresholdConfig.isDynamic;
}
}
});
});
},
};
const definitions = {
@@ -491,9 +467,6 @@ const commandsModule = ({
setThresholdRange: {
commandFn: actions.setThresholdRange,
},
toggleThresholdRangeAndDynamic: {
commandFn: actions.toggleThresholdRangeAndDynamic,
},
};
return {
@@ -3,7 +3,6 @@ import React from 'react';
import { useAppConfig } from '@state';
import { Toolbox } from '@ohif/ui';
import PanelSegmentation from './panels/PanelSegmentation';
import { SegmentationPanelMode } from './types/segmentation';
const getPanelModule = ({
commandsManager,
@@ -17,11 +16,6 @@ const getPanelModule = ({
const wrappedPanelSegmentation = configuration => {
const [appConfig] = useAppConfig();
const disableEditingForMode = customizationService.get('segmentation.disableEditing');
const segmentationPanelMode =
customizationService.get('segmentation.segmentationPanelMode')?.value ||
SegmentationPanelMode.Dropdown;
return (
<PanelSegmentation
commandsManager={commandsManager}
@@ -29,8 +23,8 @@ const getPanelModule = ({
extensionManager={extensionManager}
configuration={{
...configuration,
disableEditing: appConfig.disableEditing || disableEditingForMode?.value,
segmentationPanelMode: segmentationPanelMode,
disableEditing: appConfig.disableEditing,
...customizationService.get('segmentation.panel'),
}}
/>
);
@@ -38,9 +32,6 @@ const getPanelModule = ({
const wrappedPanelSegmentationWithTools = configuration => {
const [appConfig] = useAppConfig();
const segmentationPanelMode =
customizationService.get('segmentation.segmentationPanelMode')?.value ||
SegmentationPanelMode.Dropdown;
return (
<>
@@ -60,7 +51,8 @@ const getPanelModule = ({
extensionManager={extensionManager}
configuration={{
...configuration,
segmentationPanelMode: segmentationPanelMode,
disableEditing: appConfig.disableEditing,
...customizationService.get('segmentation.panel'),
}}
/>
</>
@@ -1,5 +1,5 @@
export function getToolbarModule({ commandsManager, servicesManager }) {
const { segmentationService, toolGroupService } = servicesManager.services;
export function getToolbarModule({ servicesManager }) {
const { segmentationService, toolbarService, toolGroupService } = servicesManager.services;
return [
{
name: 'evaluate.cornerstone.segmentation',
@@ -20,12 +20,16 @@ export function getToolbarModule({ commandsManager, servicesManager }) {
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
if (!toolGroup) {
return;
return {
disabled: true,
className: '!text-common-bright ohif-disabled',
disabledText: disabledText ?? 'Not available on the current viewport',
};
}
const toolName = getToolNameForButton(button);
const toolName = toolbarService.getToolNameForButton(button);
if (!toolGroup || !toolGroup.hasTool(toolName)) {
if (!toolGroup.hasTool(toolName) && !toolNames) {
return {
disabled: true,
className: '!text-common-bright ohif-disabled',
@@ -51,17 +55,3 @@ export function getToolbarModule({ commandsManager, servicesManager }) {
},
];
}
function getToolNameForButton(button) {
const { props } = button;
const commands = props?.commands || button.commands;
if (commands && commands.length) {
const command = commands[0];
const { commandOptions } = command;
const { toolName } = commandOptions || { toolName: props?.id ?? button.id };
return toolName;
}
return null;
}
@@ -6,7 +6,6 @@ import getHangingProtocolModule from './getHangingProtocolModule';
import getPanelModule from './getPanelModule';
import getCommandsModule from './commandsModule';
import { getToolbarModule } from './getToolbarModule';
import preRegistration from './init';
const Component = React.lazy(() => {
return import(/* webpackPrefetch: true */ './viewports/OHIFCornerstoneSEGViewport');
@@ -29,7 +28,6 @@ const extension = {
* You ID can be anything you want, but it should be unique.
*/
id,
preRegistration,
/**
* PanelModule should provide a list of panels that will be available in OHIF
* for Modes to consume and render. Each panel is defined by a {name,
@@ -1,5 +0,0 @@
import { addTool, BrushTool } from '@cornerstonejs/tools';
export default function init({ servicesManager }): void {
addTool(BrushTool);
}
@@ -18,11 +18,18 @@ export default function PanelSegmentation({
extensionManager,
configuration,
}) {
const { segmentationService, viewportGridService, uiDialogService } = servicesManager.services;
const {
segmentationService,
viewportGridService,
uiDialogService,
displaySetService,
cornerstoneViewportService,
} = servicesManager.services;
const { t } = useTranslation('PanelSegmentation');
const [selectedSegmentationId, setSelectedSegmentationId] = useState(null);
const [addSegmentationClassName, setAddSegmentationClassName] = useState('');
const [segmentationConfiguration, setSegmentationConfiguration] = useState(
segmentationService.getConfiguration()
);
@@ -52,6 +59,64 @@ export default function PanelSegmentation({
};
}, []);
// temporary measure to not allow add segmentation when the selected viewport
// is stack viewport
useEffect(() => {
const handleActiveViewportChange = viewportId => {
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(
viewportId || viewportGridService.getActiveViewportId()
);
if (!displaySetUIDs) {
return;
}
const isReconstructable =
displaySetUIDs?.some(displaySetUID => {
const displaySet = displaySetService.getDisplaySetByUID(displaySetUID);
return displaySet?.isReconstructable;
}) || false;
if (isReconstructable) {
setAddSegmentationClassName('');
} else {
setAddSegmentationClassName('ohif-disabled');
}
};
// Handle initial state
handleActiveViewportChange();
const changedGrid = viewportGridService.EVENTS.ACTIVE_VIEWPORT_ID_CHANGED;
const ready = viewportGridService.EVENTS.VIEWPORTS_READY;
const subsGrid = [];
[ready, changedGrid].forEach(evt => {
const { unsubscribe } = viewportGridService.subscribe(evt, ({ viewportId }) => {
handleActiveViewportChange(viewportId);
});
subsGrid.push(unsubscribe);
});
const changedData = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
const subsData = [];
[changedData].forEach(evt => {
const { unsubscribe } = cornerstoneViewportService.subscribe(evt, () => {
handleActiveViewportChange();
});
subsData.push(unsubscribe);
});
// Clean up
return () => {
subsGrid.forEach(unsub => unsub());
subsData.forEach(unsub => unsub());
};
}, []);
const getToolGroupIds = segmentationId => {
const toolGroupIds = segmentationService.getToolGroupIdsWithSegmentation(segmentationId);
@@ -59,7 +124,9 @@ export default function PanelSegmentation({
};
const onSegmentationAdd = async () => {
commandsManager.runCommand('createEmptySegmentationForViewport');
commandsManager.runCommand('createEmptySegmentationForViewport', {
viewportId: viewportGridService.getActiveViewportId(),
});
};
const onSegmentationClick = (segmentationId: string) => {
@@ -152,6 +219,7 @@ export default function PanelSegmentation({
segmentationService.removeSegment(segmentationId, segmentIndex);
};
// segment hide
const onToggleSegmentVisibility = (segmentationId, segmentIndex) => {
const segmentation = segmentationService.getSegmentation(segmentationId);
const segmentInfo = segmentation.segments[segmentIndex];
@@ -242,7 +310,13 @@ export default function PanelSegmentation({
});
};
const SegmentationGroupTableComponent = components[configuration?.segmentationPanelMode];
const SegmentationGroupTableComponent =
components[configuration?.segmentationPanelMode] || SegmentationGroupTable;
const allowAddSegment = configuration?.addSegment;
const onSegmentationAddWrapper =
configuration?.onSegmentationAdd && typeof configuration?.onSegmentationAdd === 'function'
? configuration?.onSegmentationAdd
: onSegmentationAdd;
return (
<SegmentationGroupTableComponent
@@ -250,7 +324,9 @@ export default function PanelSegmentation({
segmentations={segmentations}
disableEditing={configuration.disableEditing}
activeSegmentationId={selectedSegmentationId || ''}
onSegmentationAdd={onSegmentationAdd}
onSegmentationAdd={onSegmentationAddWrapper}
addSegmentationClassName={addSegmentationClassName}
showAddSegment={allowAddSegment}
onSegmentationClick={onSegmentationClick}
onSegmentationDelete={onSegmentationDelete}
onSegmentationDownload={onSegmentationDownload}
@@ -138,7 +138,7 @@ function getUpdatedViewportsForSegmentation({
const { hangingProtocolService, displaySetService, segmentationService, viewportGridService } =
servicesManager.services;
const { viewports } = viewportGridService.getState();
const { viewports, isHangingProtocolLayout } = viewportGridService.getState();
const viewport = getTargetViewport({ viewportId, viewportGridService });
const targetViewportId = viewport.viewportOptions.viewportId;
@@ -153,7 +153,8 @@ function getUpdatedViewportsForSegmentation({
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
targetViewportId,
referenceDisplaySetInstanceUID
referenceDisplaySetInstanceUID,
isHangingProtocolLayout
);
viewports.forEach((viewport, viewportId) => {
@@ -63,6 +63,11 @@ function _askHydrate(uiViewportDialogService, viewportId) {
uiViewportDialogService.hide();
resolve(RESPONSE.CANCEL);
},
onKeyPress: event => {
if (event.key === 'Enter') {
onSubmit(RESPONSE.HYDRATE_SEG);
}
},
});
});
}
@@ -25,7 +25,6 @@ function OHIFCornerstoneSEGViewport(props) {
displaySetService,
toolGroupService,
segmentationService,
uiNotificationService,
customizationService,
viewportActionCornersService,
} = servicesManager.services;
@@ -112,7 +111,10 @@ function OHIFCornerstoneSEGViewport(props) {
orientation: viewportOptions.orientation,
viewportId: viewportOptions.viewportId,
}}
onElementEnabled={onElementEnabled}
onElementEnabled={evt => {
props.onElementEnabled?.(evt);
onElementEnabled(evt);
}}
onElementDisabled={onElementDisabled}
></Component>
);
@@ -3,6 +3,220 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
### Bug Fixes
* **toolbox:** Preserve user-specified tool state and streamline command execution ([#4063](https://github.com/OHIF/Viewers/issues/4063)) ([f1a736d](https://github.com/OHIF/Viewers/commit/f1a736d1934733a434cb87b2c284907a3122403f))
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
### Bug Fixes
* **bugs:** fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change ([#4068](https://github.com/OHIF/Viewers/issues/4068)) ([c09311d](https://github.com/OHIF/Viewers/commit/c09311d3b7df05fcd00a9f36a7233e9d7e5589d0))
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
### Bug Fixes
* **viewport-webworker-segmentation:** Resolve issues with viewport detection, webworker termination, and segmentation panel layout change ([#4059](https://github.com/OHIF/Viewers/issues/4059)) ([52a0c59](https://github.com/OHIF/Viewers/commit/52a0c59294a4161fcca0a6708855549034849951))
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
### Features
* **tmtv-mode:** Add Brush tools and move SUV peak calculation to web worker ([#4053](https://github.com/OHIF/Viewers/issues/4053)) ([8192e34](https://github.com/OHIF/Viewers/commit/8192e348eca993fec331d4963efe88f9a730eceb))
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
### Bug Fixes
* **layouts:** and fix thumbnail in touch and update migration guide for 3.8 release ([#4052](https://github.com/OHIF/Viewers/issues/4052)) ([d250d04](https://github.com/OHIF/Viewers/commit/d250d04580883446fcb8d748b2a97c5c198922af))
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
### Bug Fixes
* **bugs:** enhancements and bug fixes - final ([#4048](https://github.com/OHIF/Viewers/issues/4048)) ([170bb96](https://github.com/OHIF/Viewers/commit/170bb96983082c39b22b7352e0c54aacf3e73b02))
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
### Bug Fixes
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
### Features
* **SM:** remove SM measurements from measurement panel ([#4022](https://github.com/OHIF/Viewers/issues/4022)) ([df49a65](https://github.com/OHIF/Viewers/commit/df49a653be61a93f6e9fb3663aabe9775c31fd13))
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
### Features
* **4D:** Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode ([#3664](https://github.com/OHIF/Viewers/issues/3664)) ([d57e8bc](https://github.com/OHIF/Viewers/commit/d57e8bc1571c6da4effaa492ee2d162c552365a2))
# [3.8.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.72...v3.8.0-beta.73) (2024-04-08)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.8.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.71...v3.8.0-beta.72) (2024-04-05)
### Bug Fixes
* **cornerstone-dicom-sr:** Freehand SR hydration support ([#3996](https://github.com/OHIF/Viewers/issues/3996)) ([5645ac1](https://github.com/OHIF/Viewers/commit/5645ac1b271e1ed8c57f5d71100809362447267e))
# [3.8.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.70...v3.8.0-beta.71) (2024-04-05)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+8 -8
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-sr",
"version": "3.8.0-beta.71",
"version": "3.8.0",
"description": "OHIF extension for an SR Cornerstone Viewport",
"author": "OHIF",
"license": "MIT",
@@ -34,10 +34,10 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
},
"peerDependencies": {
"@ohif/core": "3.8.0-beta.71",
"@ohif/extension-cornerstone": "3.8.0-beta.71",
"@ohif/extension-measurement-tracking": "3.8.0-beta.71",
"@ohif/ui": "3.8.0-beta.71",
"@ohif/core": "3.8.0",
"@ohif/extension-cornerstone": "3.8.0",
"@ohif/extension-measurement-tracking": "3.8.0",
"@ohif/ui": "3.8.0",
"dcmjs": "^0.29.12",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
@@ -46,9 +46,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.67.0",
"@cornerstonejs/core": "^1.67.0",
"@cornerstonejs/tools": "^1.67.0",
"@cornerstonejs/adapters": "^1.70.14",
"@cornerstonejs/core": "^1.70.14",
"@cornerstonejs/tools": "^1.70.14",
"classnames": "^2.3.2"
}
}
@@ -1,6 +1,6 @@
import { SOPClassHandlerName, SOPClassHandlerId } from './id';
import { utils, classes, DisplaySetService, Types } from '@ohif/core';
import addMeasurement from './utils/addMeasurement';
import addDICOMSRDisplayAnnotation from './utils/addDICOMSRDisplayAnnotation';
import isRehydratable from './utils/isRehydratable';
import { adaptersSR } from '@cornerstonejs/adapters';
@@ -150,13 +150,37 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
return [displaySet];
}
function _load(displaySet, servicesManager, extensionManager) {
async function _load(displaySet, servicesManager, extensionManager) {
const { displaySetService, measurementService } = servicesManager.services;
const dataSources = extensionManager.getDataSources();
const dataSource = dataSources[0];
const { ContentSequence } = displaySet.instance;
async function retrieveBulkData(obj, parentObj = null, key = null) {
for (const prop in obj) {
if (typeof obj[prop] === 'object' && obj[prop] !== null) {
await retrieveBulkData(obj[prop], obj, prop);
} else if (Array.isArray(obj[prop])) {
await Promise.all(obj[prop].map(item => retrieveBulkData(item, obj, prop)));
} else if (prop === 'BulkDataURI') {
const value = await dataSource.retrieve.bulkDataURI({
BulkDataURI: obj[prop],
StudyInstanceUID: displaySet.instance.StudyInstanceUID,
SeriesInstanceUID: displaySet.instance.SeriesInstanceUID,
SOPInstanceUID: displaySet.instance.SOPInstanceUID,
});
if (parentObj && key) {
parentObj[key] = new Float32Array(value);
}
}
}
}
if (displaySet.isLoaded !== true) {
await retrieveBulkData(ContentSequence);
}
displaySet.referencedImages = _getReferencedImagesList(ContentSequence);
displaySet.measurements = _getMeasurements(ContentSequence);
@@ -211,7 +235,7 @@ function _checkIfCanAddMeasurementsToDisplaySet(
return;
}
if (!newDisplaySet instanceof ImageSet) {
if ((!newDisplaySet) instanceof ImageSet) {
// This also filters out _this_ displaySet, as it is not an ImageSet.
return;
}
@@ -275,7 +299,22 @@ function _checkIfCanAddMeasurementsToDisplaySet(
}
if (_measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frameNumber)) {
addMeasurement(measurement, imageId, newDisplaySet.displaySetInstanceUID);
const frame =
(measurement.coords[0].ReferencedSOPSequence &&
measurement.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber) ||
1;
/** Add DICOMSRDisplay annotation for the SR viewport (only) */
addDICOMSRDisplayAnnotation(measurement, imageId, frame);
/** Update measurement properties */
measurement.loaded = true;
measurement.imageId = imageId;
measurement.displaySetInstanceUID = newDisplaySet.displaySetInstanceUID;
measurement.ReferencedSOPInstanceUID =
measurement.coords[0].ReferencedSOPSequence.ReferencedSOPInstanceUID;
measurement.frameNumber = frame;
delete measurement.coords;
unloadedMeasurements.splice(j, 1);
}
@@ -291,7 +330,7 @@ function _measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frame
// Standard. But for now, we will support only one ReferenceFrameNumber.
const ReferencedFrameNumber =
(measurement.coords[0].ReferencedSOPSequence &&
measurement.coords[0].ReferencedSOPSequence[0]?.ReferencedFrameNumber) ||
measurement.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber) ||
1;
if (frameNumber && Number(frameNumber) !== Number(ReferencedFrameNumber)) {
@@ -1,6 +1,6 @@
import React from 'react';
import getSopClassHandlerModule from './getSopClassHandlerModule';
import getHangingProtocolModule, { srProtocol } from './getHangingProtocolModule';
import { srProtocol } from './getHangingProtocolModule';
import onModeEnter from './onModeEnter';
import getCommandsModule from './commandsModule';
import preRegistration from './init';
+8 -6
View File
@@ -1,5 +1,4 @@
import {
addTool,
AngleTool,
annotation,
ArrowAnnotateTool,
@@ -9,6 +8,7 @@ import {
CircleROITool,
LengthTool,
PlanarFreehandROITool,
RectangleROITool,
} from '@cornerstonejs/tools';
import DICOMSRDisplayTool from './tools/DICOMSRDisplayTool';
import addToolInstance from './utils/addToolInstance';
@@ -19,24 +19,25 @@ import toolNames from './tools/toolNames';
* @param {object} configuration
*/
export default function init({ configuration = {} }: Types.Extensions.ExtensionParams): void {
addTool(DICOMSRDisplayTool);
addToolInstance(toolNames.SRLength, LengthTool, {});
addToolInstance(toolNames.DICOMSRDisplay, DICOMSRDisplayTool);
addToolInstance(toolNames.SRLength, LengthTool);
addToolInstance(toolNames.SRBidirectional, BidirectionalTool);
addToolInstance(toolNames.SREllipticalROI, EllipticalROITool);
addToolInstance(toolNames.SRCircleROI, CircleROITool);
addToolInstance(toolNames.SRArrowAnnotate, ArrowAnnotateTool);
addToolInstance(toolNames.SRAngle, AngleTool);
addToolInstance(toolNames.SRPlanarFreehandROI, PlanarFreehandROITool);
addToolInstance(toolNames.SRRectangleROI, RectangleROITool);
// TODO - fix the SR display of Cobb Angle, as it joins the two lines
addToolInstance(toolNames.SRCobbAngle, CobbAngleTool);
// TODO - fix the rehydration of Freehand, as it throws an exception
// on a missing polyline. The fix is probably in CS3D
addToolInstance(toolNames.SRPlanarFreehandROI, PlanarFreehandROITool);
// Modify annotation tools to use dashed lines on SR
const dashedLine = {
lineDash: '4,4',
};
annotation.config.style.setToolGroupToolStyles('SRToolGroup', {
[toolNames.DICOMSRDisplay]: dashedLine,
SRLength: dashedLine,
SRBidirectional: dashedLine,
SREllipticalROI: dashedLine,
@@ -45,6 +46,7 @@ export default function init({ configuration = {} }: Types.Extensions.ExtensionP
SRCobbAngle: dashedLine,
SRAngle: dashedLine,
SRPlanarFreehandROI: dashedLine,
SRRectangleROI: dashedLine,
global: {},
});
}
@@ -22,14 +22,14 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
}
_getTextBoxLinesFromLabels(labels) {
// TODO -> max 3 for now (label + shortAxis + longAxis), need a generic solution for this!
// TODO -> max 5 for now (label + shortAxis + longAxis), need a generic solution for this!
const labelLength = Math.min(labels.length, 3);
const labelLength = Math.min(labels.length, 5);
const lines = [];
for (let i = 0; i < labelLength; i++) {
const labelEntry = labels[i];
lines.push(`${_labelToShorthand(labelEntry.label)}${labelEntry.value}`);
lines.push(`${_labelToShorthand(labelEntry.label)}: ${labelEntry.value}`);
}
return lines;
@@ -65,7 +65,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
// Filter toolData to only render the data for the active SR.
const filteredAnnotations = annotations.filter(annotation =>
trackingUniqueIdentifiers.includes(annotation.data?.cachedStats?.TrackingUniqueIdentifier)
trackingUniqueIdentifiers.includes(annotation.data?.TrackingUniqueIdentifier)
);
if (!viewport._actors?.size) {
@@ -77,20 +77,24 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
toolName: this.getToolName(),
viewportId: enabledElement.viewport.id,
};
const { style: annotationStyle } = annotation.config;
for (let i = 0; i < filteredAnnotations.length; i++) {
const annotation = filteredAnnotations[i];
const annotationUID = annotation.annotationUID;
const { renderableData } = annotation.data.cachedStats;
const { cachedStats } = annotation.data;
const { renderableData, TrackingUniqueIdentifier } = annotation.data;
const { referencedImageId } = annotation.metadata;
styleSpecifier.annotationUID = annotationUID;
const groupStyle = annotationStyle.getToolGroupToolStyles(this.toolGroupId)[
this.getToolName()
];
const lineWidth = this.getStyle('lineWidth', styleSpecifier, annotation);
const lineDash = this.getStyle('lineDash', styleSpecifier, annotation);
const color =
cachedStats.TrackingUniqueIdentifier === activeTrackingUniqueIdentifier
TrackingUniqueIdentifier === activeTrackingUniqueIdentifier
? 'rgb(0, 255, 0)'
: this.getStyle('color', styleSpecifier, annotation);
@@ -98,6 +102,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
color,
lineDash,
lineWidth,
...groupStyle,
};
Object.keys(renderableData).forEach(GraphicType => {
@@ -160,6 +165,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
const drawingOptions = {
color: options.color,
width: options.lineWidth,
lineDash: options.lineDash,
};
let allCanvasCoordinates = [];
renderableData.map((data, index) => {
@@ -307,6 +313,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
{
color: options.color,
width: options.lineWidth,
lineDash: options.lineDash,
}
);
});
@@ -1,15 +1,13 @@
import { vec3 } from 'gl-matrix';
import { Types, annotation } from '@cornerstonejs/tools';
import { metaData, utilities, Types as csTypes } from '@cornerstonejs/core';
import toolNames from '../tools/toolNames';
import SCOORD_TYPES from '../constants/scoordTypes';
const EPSILON = 1e-4;
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
export default function addMeasurement(measurement, imageId, displaySetInstanceUID) {
// TODO -> Render rotated ellipse .
export default function addDICOMSRDisplayAnnotation(measurement, imageId, frameNumber) {
const toolName = toolNames.DICOMSRDisplay;
const measurementData = {
@@ -27,26 +25,25 @@ export default function addMeasurement(measurement, imageId, displaySetInstanceU
}
measurementData.renderableData[GraphicType].push(
_getRenderableData(GraphicType, GraphicData, imageId, measurement.TrackingIdentifier)
_getRenderableData(GraphicType, GraphicData, imageId)
);
});
// Use the metadata provider to grab its imagePlaneModule metadata
const imagePlaneModule = metaData.get('imagePlaneModule', imageId);
const annotationManager = annotation.state.getAnnotationManager();
// Create Cornerstone3D Annotation from measurement
const frameNumber =
(measurement.coords[0].ReferencedSOPSequence &&
measurement.coords[0].ReferencedSOPSequence[0]?.ReferencedFrameNumber) ||
1;
/**
* This annotation (DICOMSRDisplay) is only used by the SR viewport.
* This is used before the annotation is hydrated. If hydrated the measurement will be added
* to the measurement service and will be available for the other viewports.
*/
const SRAnnotation: Types.Annotation = {
annotationUID: measurement.TrackingUniqueIdentifier,
highlighted: false,
isLocked: false,
invalidated: false,
metadata: {
FrameOfReferenceUID: imagePlaneModule.frameOfReferenceUID,
toolName: toolName,
FrameOfReferenceUID: imagePlaneModule.frameOfReferenceUID,
referencedImageId: imageId,
},
data: {
@@ -54,32 +51,17 @@ export default function addMeasurement(measurement, imageId, displaySetInstanceU
handles: {
textBox: measurement.textBox ?? {},
},
cachedStats: {
TrackingUniqueIdentifier: measurementData.TrackingUniqueIdentifier,
renderableData: measurementData.renderableData,
},
frameNumber: frameNumber,
cachedStats: {},
TrackingUniqueIdentifier: measurementData.TrackingUniqueIdentifier,
renderableData: measurementData.renderableData,
frameNumber,
},
};
const annotationManager = annotation.state.getAnnotationManager();
annotationManager.addAnnotation(SRAnnotation);
measurement.loaded = true;
measurement.imageId = imageId;
measurement.displaySetInstanceUID = displaySetInstanceUID;
// Remove the unneeded coord now its processed, but keep the SOPInstanceUID.
// NOTE: We assume that each SCOORD in the MeasurementGroup maps onto one frame,
// It'd be super weird if it didn't anyway as a SCOORD.
measurement.ReferencedSOPInstanceUID =
measurement.coords[0].ReferencedSOPSequence.ReferencedSOPInstanceUID;
measurement.frameNumber = frameNumber;
delete measurement.coords;
}
function _getRenderableData(GraphicType, GraphicData, imageId, TrackingIdentifier) {
const [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
function _getRenderableData(GraphicType, GraphicData, imageId) {
let renderableData: csTypes.Point3[];
switch (GraphicType) {
@@ -8,6 +8,7 @@ import { setTrackingUniqueIdentifiersForElement } from '../tools/modules/dicomSR
import { Icon, Tooltip, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
import hydrateStructuredReport from '../utils/hydrateStructuredReport';
import { useAppConfig } from '@state';
import createReferencedImageDisplaySet from '../utils/createReferencedImageDisplaySet';
const MEASUREMENT_TRACKING_EXTENSION_ID = '@ohif/extension-measurement-tracking';
@@ -125,6 +126,10 @@ function OHIFCornerstoneSRViewport(props) {
console.warn('More than one SOPClassUID in the same series is not yet supported.');
}
// if (!srDisplaySet.measurements || !srDisplaySet.measurements.length) {
// return;
// }
_getViewportReferencedDisplaySetData(
srDisplaySet,
newMeasurementSelected,
@@ -199,7 +204,10 @@ function OHIFCornerstoneSRViewport(props) {
// The positionIds for the viewport aren't meaningful for the child display sets
positionIds: null,
}}
onElementEnabled={onElementEnabled}
onElementEnabled={evt => {
props.onElementEnabled?.(evt);
onElementEnabled(evt);
}}
initialImageIndex={initialImageIndex}
isJumpToMeasurementDisabled={true}
></Component>
@@ -253,12 +261,16 @@ function OHIFCornerstoneSRViewport(props) {
* if it is hydrated we don't even use the SR viewport.
*/
useEffect(() => {
if (!srDisplaySet.isLoaded) {
srDisplaySet.load();
}
const numMeasurements = srDisplaySet.measurements.length;
setMeasurementCount(numMeasurements);
}, [srDisplaySet]);
const loadSR = async () => {
if (!srDisplaySet.isLoaded) {
await srDisplaySet.load();
}
const numMeasurements = srDisplaySet.measurements.length;
setMeasurementCount(numMeasurements);
updateViewport(measurementSelected);
};
loadSR();
}, [dataSource, srDisplaySet]);
/**
* Hook to update the tracking identifiers when the selected measurement changes or
@@ -275,19 +287,11 @@ function OHIFCornerstoneSRViewport(props) {
* Todo: what is this, not sure what it does regarding the react aspect,
* it is updating a local variable? which is not state.
*/
let isLocked = trackedMeasurements?.context?.trackedSeries?.length > 0;
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
useEffect(() => {
isLocked = trackedMeasurements?.context?.trackedSeries?.length > 0;
setIsLocked(trackedMeasurements?.context?.trackedSeries?.length > 0);
}, [trackedMeasurements]);
/**
* Data fetching for the SR displaySet, which updates the measurements and
* also gets the referenced image displaySet that SR is based on.
*/
useEffect(() => {
updateViewport(measurementSelected);
}, [dataSource, srDisplaySet]);
useEffect(() => {
viewportActionCornersService.setComponents([
{
@@ -382,6 +386,13 @@ async function _getViewportReferencedDisplaySetData(
const measurement = measurements[measurementSelected];
const { displaySetInstanceUID } = measurement;
if (!displaySet.keyImageDisplaySet) {
// Create a new display set, and preserve a reference to it here,
// so that it can be re-displayed and shown inside the SR viewport.
// This is only for ease of redisplay - the display set is stored in the
// usual manner in the display set service.
displaySet.keyImageDisplaySet = createReferencedImageDisplaySet(displaySetService, displaySet);
}
const referencedDisplaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
@@ -0,0 +1,8 @@
const path = require('path');
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
const SRC_DIR = path.join(__dirname, '../src');
const DIST_DIR = path.join(__dirname, '../dist');
module.exports = (env, argv) => {
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
};
@@ -0,0 +1,54 @@
const webpack = require('webpack');
const { merge } = require('webpack-merge');
const path = require('path');
const webpackCommon = require('./../../../.webpack/webpack.base.js');
const MiniCssExtractPlugin = require('mini-css-extract-plugin');
const pkg = require('./../package.json');
const ROOT_DIR = path.join(__dirname, '../');
const SRC_DIR = path.join(__dirname, '../src');
const DIST_DIR = path.join(__dirname, '../dist');
const ENTRY = {
app: `${SRC_DIR}/index.ts`,
};
const outputName = `ohif-${pkg.name.split('/').pop()}`;
module.exports = (env, argv) => {
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR, ENTRY });
return merge(commonConfig, {
stats: {
colors: true,
hash: true,
timings: true,
assets: true,
chunks: false,
chunkModules: false,
modules: false,
children: false,
warnings: true,
},
optimization: {
minimize: true,
sideEffects: true,
},
output: {
path: ROOT_DIR,
library: 'ohif-extension-cornerstone',
libraryTarget: 'umd',
filename: pkg.main,
},
externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],
plugins: [
new webpack.optimize.LimitChunkCountPlugin({
maxChunks: 1,
}),
new MiniCssExtractPlugin({
filename: `./dist/${outputName}.css`,
chunkFilename: `./dist/${outputName}.css`,
}),
],
});
};
@@ -0,0 +1,204 @@
# Change Log
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
### Bug Fixes
* **toolbox:** Preserve user-specified tool state and streamline command execution ([#4063](https://github.com/OHIF/Viewers/issues/4063)) ([f1a736d](https://github.com/OHIF/Viewers/commit/f1a736d1934733a434cb87b2c284907a3122403f))
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
### Bug Fixes
* **bugs:** fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change ([#4068](https://github.com/OHIF/Viewers/issues/4068)) ([c09311d](https://github.com/OHIF/Viewers/commit/c09311d3b7df05fcd00a9f36a7233e9d7e5589d0))
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
### Bug Fixes
* **viewport-webworker-segmentation:** Resolve issues with viewport detection, webworker termination, and segmentation panel layout change ([#4059](https://github.com/OHIF/Viewers/issues/4059)) ([52a0c59](https://github.com/OHIF/Viewers/commit/52a0c59294a4161fcca0a6708855549034849951))
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
### Features
* **tmtv-mode:** Add Brush tools and move SUV peak calculation to web worker ([#4053](https://github.com/OHIF/Viewers/issues/4053)) ([8192e34](https://github.com/OHIF/Viewers/commit/8192e348eca993fec331d4963efe88f9a730eceb))
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
### Bug Fixes
* **layouts:** and fix thumbnail in touch and update migration guide for 3.8 release ([#4052](https://github.com/OHIF/Viewers/issues/4052)) ([d250d04](https://github.com/OHIF/Viewers/commit/d250d04580883446fcb8d748b2a97c5c198922af))
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
### Bug Fixes
* **bugs:** and replace seriesInstanceUID and seriesInstanceUIDs URL with seriesInstanceUIDs ([#4049](https://github.com/OHIF/Viewers/issues/4049)) ([da7c1a5](https://github.com/OHIF/Viewers/commit/da7c1a5d8c54bfa1d3f97bbc500386bf76e7fd9d))
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
### Bug Fixes
* **bugs:** enhancements and bug fixes - final ([#4048](https://github.com/OHIF/Viewers/issues/4048)) ([170bb96](https://github.com/OHIF/Viewers/commit/170bb96983082c39b22b7352e0c54aacf3e73b02))
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
### Bug Fixes
* **bugs:** enhancements and bug fixes - more ([#4043](https://github.com/OHIF/Viewers/issues/4043)) ([3754c22](https://github.com/OHIF/Viewers/commit/3754c224b4dab28182adb0a41e37d890942144d8))
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
### Bug Fixes
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
### Bug Fixes
* **bugs:** enhancements and bug fixes ([#4036](https://github.com/OHIF/Viewers/issues/4036)) ([e80fc6f](https://github.com/OHIF/Viewers/commit/e80fc6f47708e1d6b1a1e1de438196a4b74ec637))
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
### Features
* **SM:** remove SM measurements from measurement panel ([#4022](https://github.com/OHIF/Viewers/issues/4022)) ([df49a65](https://github.com/OHIF/Viewers/commit/df49a653be61a93f6e9fb3663aabe9775c31fd13))
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
### Features
* **4D:** Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode ([#3664](https://github.com/OHIF/Viewers/issues/3664)) ([d57e8bc](https://github.com/OHIF/Viewers/commit/d57e8bc1571c6da4effaa492ee2d162c552365a2))
@@ -0,0 +1,20 @@
MIT License
Copyright (c) 2023 cornerstone-dynamic-volume ()
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
the Software, and to permit persons to whom the Software is furnished to do so,
subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
@@ -0,0 +1,8 @@
# cornerstone-dynamic-volume
## Description
## Author
OHIF
## License
MIT
@@ -0,0 +1 @@
module.exports = require('../../babel.config.js');
@@ -0,0 +1,50 @@
{
"name": "@ohif/extension-cornerstone-dynamic-volume",
"version": "3.8.0",
"description": "OHIF extension for 4D volumes data",
"author": "OHIF",
"license": "MIT",
"repository": "OHIF/Viewers",
"main": "dist/ohif-extension-cornerstone-dynamic-volume.umd.js",
"module": "src/index.ts",
"exports": {
".": "./src/index.ts",
"./types": "./src/types/index.ts"
},
"files": [
"dist",
"README.md"
],
"publishConfig": {
"access": "public"
},
"scripts": {
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
"build:package": "yarn run build",
"clean": "shx rm -rf dist",
"clean:deep": "yarn run clean && shx rm -rf node_modules",
"start": "yarn run dev",
"test:unit": "jest --watchAll",
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
},
"peerDependencies": {
"@ohif/core": "3.8.0",
"@ohif/extension-cornerstone": "3.8.0",
"@ohif/extension-default": "3.8.0",
"@ohif/i18n": "3.8.0",
"@ohif/ui": "3.8.0",
"dcmjs": "^0.29.5",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
"react": "^17.0.2"
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/core": "^1.70.14",
"@cornerstonejs/streaming-image-volume-loader": "^1.70.14",
"@cornerstonejs/tools": "^1.70.14",
"classnames": "^2.3.2"
}
}
@@ -0,0 +1,3 @@
import updateSegmentationsChartDisplaySet from './updateSegmentationsChartDisplaySet';
export { updateSegmentationsChartDisplaySet };
@@ -0,0 +1,281 @@
import { DicomMetadataStore, utils } from '@ohif/core';
import * as cs from '@cornerstonejs/core';
import * as csTools from '@cornerstonejs/tools';
const CHART_MODALITY = 'CHT';
const SEG_CHART_INSTANCE_UID = utils.guid();
// Private SOPClassUid for chart data
const ChartDataSOPClassUid = '1.9.451.13215.7.3.2.7.6.1';
const { utilities: csToolsUtils } = csTools;
function _getDateTimeStr() {
const now = new Date();
const date =
now.getFullYear() + ('0' + now.getUTCMonth()).slice(-2) + ('0' + now.getUTCDate()).slice(-2);
const time =
('0' + now.getUTCHours()).slice(-2) +
('0' + now.getUTCMinutes()).slice(-2) +
('0' + now.getUTCSeconds()).slice(-2);
return { date, time };
}
function _getTimePointsDataByTagName(volume, timePointsTag) {
const uniqueTimePoints = volume.imageIds.reduce((timePoints, imageId) => {
const instance = DicomMetadataStore.getInstanceByImageId(imageId);
const timePointValue = instance[timePointsTag];
if (timePointValue !== undefined) {
timePoints.add(timePointValue);
}
return timePoints;
}, new Set());
return Array.from(uniqueTimePoints).sort((a: number, b: number) => a - b);
}
function _convertTimePointsUnit(timePoints, timePointsUnit) {
const validUnits = ['ms', 's', 'm', 'h'];
const divisors = [1000, 60, 60];
const currentUnitIndex = validUnits.indexOf(timePointsUnit);
let divisor = 1;
if (currentUnitIndex !== -1) {
for (let i = currentUnitIndex; i < validUnits.length - 1; i++) {
const newDivisor = divisor * divisors[i];
const greaterThanDivisorCount = timePoints.filter(timePoint => timePoint > newDivisor).length;
// Change the scale only if more than 50% of the time points are
// greater than the new divisor.
if (greaterThanDivisorCount <= timePoints.length / 2) {
break;
}
divisor = newDivisor;
timePointsUnit = validUnits[i + 1];
}
if (divisor > 1) {
timePoints = timePoints.map(timePoint => timePoint / divisor);
}
}
return { timePoints, timePointsUnit };
}
// It currently supports only one tag but a few other will be added soon
// Supported 4D Tags
// (0018,1060) Trigger Time [NOK]
// (0018,0081) Echo Time [NOK]
// (0018,0086) Echo Number [NOK]
// (0020,0100) Temporal Position Identifier [NOK]
// (0054,1300) FrameReferenceTime [OK]
function _getTimePointsData(volume) {
const timePointsTags = {
FrameReferenceTime: {
unit: 'ms',
},
};
const timePointsTagNames = Object.keys(timePointsTags);
let timePoints;
let timePointsUnit;
for (let i = 0; i < timePointsTagNames.length; i++) {
const tagName = timePointsTagNames[i];
const curTimePoints = _getTimePointsDataByTagName(volume, tagName);
if (curTimePoints.length) {
timePoints = curTimePoints;
timePointsUnit = timePointsTags[tagName].unit;
break;
}
}
if (!timePoints.length) {
const concatTagNames = timePointsTagNames.join(', ');
throw new Error(`Could not extract time points data for the following tags: ${concatTagNames}`);
}
const convertedTimePoints = _convertTimePointsUnit(timePoints, timePointsUnit);
timePoints = convertedTimePoints.timePoints;
timePointsUnit = convertedTimePoints.timePointsUnit;
return { timePoints, timePointsUnit };
}
function _getSegmentationData(segmentation, volumesTimePointsCache, displaySetService) {
const displaySets = displaySetService.getActiveDisplaySets();
const dynamic4DDisplaySet = displaySets.find(displaySet => {
const anInstance = displaySet.instances?.[0];
if (anInstance) {
return (
anInstance.FrameReferenceTime !== undefined || anInstance.NumberOfTimeSlices !== undefined
);
}
return false;
});
// const referencedDynamicVolume = cs.cache.getVolume(dynamic4DDisplaySet.displaySetInstanceUID);
let volumeCacheKey: string | undefined;
const volumeId = dynamic4DDisplaySet.displaySetInstanceUID;
for (const [key] of cs.cache._volumeCache) {
if (key.includes(volumeId)) {
volumeCacheKey = key;
break;
}
}
let referencedDynamicVolume;
if (volumeCacheKey) {
referencedDynamicVolume = cs.cache.getVolume(volumeCacheKey);
}
const { StudyInstanceUID, StudyDescription } = DicomMetadataStore.getInstanceByImageId(
referencedDynamicVolume.imageIds[0]
);
const [timeData, _] = csToolsUtils.dynamicVolume.getDataInTime(referencedDynamicVolume, {
maskVolumeId: segmentation.id,
}) as number[][];
const pixelCount = timeData.length;
if (pixelCount === 0) {
return [];
}
// since we only use one segmentation representation per segmentationId
// it is fine to pick the first one
const segmentationRepresentations = csTools.segmentation.state.getSegmentationIdRepresentations(
segmentation.id
);
const segmentationRepresentationUID =
segmentationRepresentations[0].segmentationRepresentationUID;
const toolGroupId = csTools.segmentation.state.getToolGroupIdFromSegmentationRepresentationUID(
segmentationRepresentationUID
);
// Todo: this is useless we should be able to grab color with just segRepUID and segmentIndex
const color = csTools.segmentation.config.color.getColorForSegmentIndex(
toolGroupId,
segmentationRepresentationUID,
1 // segmentIndex
);
const hexColor = cs.utilities.color.rgbToHex(...color);
let timePointsData = volumesTimePointsCache.get(referencedDynamicVolume);
if (!timePointsData) {
timePointsData = _getTimePointsData(referencedDynamicVolume);
volumesTimePointsCache.set(referencedDynamicVolume, timePointsData);
}
const { timePoints, timePointsUnit } = timePointsData;
if (timePoints.length !== timeData[0].length) {
throw new Error('Invalid number of time points returned');
}
const timepointsCount = timePoints.length;
const chartSeriesData = new Array(timepointsCount);
for (let i = 0; i < timepointsCount; i++) {
const average = timeData.reduce((acc, cur) => acc + cur[i] / pixelCount, 0);
chartSeriesData[i] = [timePoints[i], average];
}
return {
StudyInstanceUID,
StudyDescription,
chartData: {
series: {
label: segmentation.label,
points: chartSeriesData,
color: hexColor,
},
axis: {
x: {
label: `Time (${timePointsUnit})`,
},
y: {
label: `Vl (Bq/ml)`,
},
},
},
};
}
function _getInstanceFromSegmentations(segmentations, displaySetService) {
if (!segmentations.length) {
return;
}
const volumesTimePointsCache = new WeakMap();
const segmentationsData = segmentations.map(segmentation =>
_getSegmentationData(segmentation, volumesTimePointsCache, displaySetService)
);
const { date: seriesDate, time: seriesTime } = _getDateTimeStr();
const series = segmentationsData.reduce((allSeries, curSegData) => {
return [...allSeries, curSegData.chartData.series];
}, []);
const instance = {
SOPClassUID: ChartDataSOPClassUid,
Modality: CHART_MODALITY,
SOPInstanceUID: utils.guid(),
SeriesDate: seriesDate,
SeriesTime: seriesTime,
SeriesInstanceUID: SEG_CHART_INSTANCE_UID,
StudyInstanceUID: segmentationsData[0].StudyInstanceUID,
StudyDescription: segmentationsData[0].StudyDescription,
SeriesNumber: 100,
SeriesDescription: 'Segmentation chart series data',
chartData: {
series,
axis: { ...segmentationsData[0].chartData.axis },
},
};
const seriesMetadata = {
StudyInstanceUID: instance.StudyInstanceUID,
StudyDescription: instance.StudyDescription,
SeriesInstanceUID: instance.SeriesInstanceUID,
SeriesDescription: instance.SeriesDescription,
SeriesNumber: instance.SeriesNumber,
SeriesTime: instance.SeriesTime,
SOPClassUID: instance.SOPClassUID,
Modality: instance.Modality,
};
return { seriesMetadata, instance };
}
function updateSegmentationsChartDisplaySet({ servicesManager }): void {
const { segmentationService, displaySetService } = servicesManager.services;
const segmentations = segmentationService.getSegmentations();
const { seriesMetadata, instance } =
_getInstanceFromSegmentations(segmentations, displaySetService) ?? {};
if (seriesMetadata && instance) {
// An event is triggered after adding the instance and the displaySet is created
DicomMetadataStore.addSeriesMetadata([seriesMetadata], true);
DicomMetadataStore.addInstances([instance], true);
}
}
export { updateSegmentationsChartDisplaySet as default };
@@ -0,0 +1,407 @@
import * as importedActions from './actions';
import { utilities, Enums } from '@cornerstonejs/tools';
import { cache } from '@cornerstonejs/core';
const LABELMAP = Enums.SegmentationRepresentations.Labelmap;
const commandsModule = ({ commandsManager, servicesManager }) => {
const services = servicesManager.services;
const { displaySetService, viewportGridService, segmentationService } = services;
const actions = {
...importedActions,
getDynamic4DDisplaySet: () => {
const displaySets = displaySetService.getActiveDisplaySets();
const dynamic4DDisplaySet = displaySets.find(displaySet => {
const anInstance = displaySet.instances?.[0];
if (anInstance) {
return (
anInstance.FrameReferenceTime !== undefined ||
anInstance.NumberOfTimeSlices !== undefined ||
anInstance.TemporalPositionIdentifier !== undefined
);
}
return false;
});
return dynamic4DDisplaySet;
},
getComputedDisplaySets: () => {
const displaySetCache = displaySetService.getDisplaySetCache();
const cachedDisplaySets = [...displaySetCache.values()];
const computedDisplaySets = cachedDisplaySets.filter(displaySet => {
return displaySet.isDerived;
});
return computedDisplaySets;
},
exportTimeReportCSV: ({ segmentations, config, options, summaryStats }) => {
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
const volumeId = dynamic4DDisplaySet?.displaySetInstanceUID;
// cache._volumeCache is a map that has a key that includes the volumeId
// it is not exactly the volumeId, but it is the key that includes the volumeId
// so we can't do cache._volumeCache.get(volumeId) we should iterate
// over the keys and find the one that includes the volumeId
let volumeCacheKey: string | undefined;
for (const [key] of cache._volumeCache) {
if (key.includes(volumeId)) {
volumeCacheKey = key;
break;
}
}
let dynamicVolume;
if (volumeCacheKey) {
dynamicVolume = cache.getVolume(volumeCacheKey);
}
const instance = dynamic4DDisplaySet.instances[0];
const csv = [];
// CSV header information with placeholder empty values for the metadata lines
csv.push(`Patient ID,${instance.PatientID},`);
csv.push(`Study Date,${instance.StudyDate},`);
csv.push(`StudyInstanceUID,${instance.StudyInstanceUID},`);
csv.push(`StudyDescription,${instance.StudyDescription},`);
csv.push(`SeriesInstanceUID,${instance.SeriesInstanceUID},`);
// empty line
csv.push('');
csv.push('');
// Helper function to calculate standard deviation
function calculateStandardDeviation(data) {
const n = data.length;
const mean = data.reduce((acc, value) => acc + value, 0) / n;
const squaredDifferences = data.map(value => (value - mean) ** 2);
const variance = squaredDifferences.reduce((acc, value) => acc + value, 0) / n;
const stdDeviation = Math.sqrt(variance);
return stdDeviation;
}
// Iterate through each segmentation to get the timeData and ijkCoords
segmentations.forEach((segmentation, segmentationIndex) => {
const [timeData, ijkCoords] = utilities.dynamicVolume.getDataInTime(dynamicVolume, {
maskVolumeId: segmentation.id,
}) as number[][];
if (summaryStats) {
// Adding column headers for pixel identifier and segmentation label ids
let headers = 'Operation,Segmentation Label ID';
const maxLength = dynamicVolume.numTimePoints;
for (let t = 0; t < maxLength; t++) {
headers += `,Time Point ${t}`;
}
csv.push(headers);
// // perform summary statistics on the timeData including for each time point, mean, median, min, max, and standard deviation for
// // all the voxels in the ROI
const mean = [];
const min = [];
const minIJK = [];
const max = [];
const maxIJK = [];
const std = [];
const numVoxels = timeData.length;
// Helper function to calculate standard deviation
for (let timeIndex = 0; timeIndex < maxLength; timeIndex++) {
// for each voxel in the ROI, get the value at the current time point
const voxelValues = [];
for (let voxelIndex = 0; voxelIndex < numVoxels; voxelIndex++) {
voxelValues.push(timeData[voxelIndex][timeIndex]);
}
mean.push(voxelValues.reduce((acc, value) => acc + value, 0) / numVoxels);
const minimum = Math.min(...voxelValues);
min.push(minimum);
minIJK.push(ijkCoords[voxelValues.indexOf(minimum)]);
const maximum = Math.max(...voxelValues);
max.push(maximum);
maxIJK.push(ijkCoords[voxelValues.indexOf(maximum)]);
std.push(calculateStandardDeviation(voxelValues));
}
let row = `Mean,${segmentation.label}`;
// Generate separate rows for each statistic
for (let t = 0; t < maxLength; t++) {
row += `,${mean[t]}`;
}
csv.push(row);
row = `Standard Deviation,${segmentation.label}`;
for (let t = 0; t < maxLength; t++) {
row += `,${std[t]}`;
}
csv.push(row);
row = `Min,${segmentation.label}`;
for (let t = 0; t < maxLength; t++) {
row += `,${min[t]}`;
}
csv.push(row);
row = `Max,${segmentation.label}`;
for (let t = 0; t < maxLength; t++) {
row += `,${max[t]}`;
}
csv.push(row);
} else {
// Adding column headers for pixel identifier and segmentation label ids
let headers = 'Pixel Identifier (IJK),Segmentation Label ID';
const maxLength = dynamicVolume.numTimePoints;
for (let t = 0; t < maxLength; t++) {
headers += `,Time Point ${t}`;
}
csv.push(headers);
// Assuming timeData and ijkCoords are of the same length
for (let i = 0; i < timeData.length; i++) {
// Generate the pixel identifier
const pixelIdentifier = `${ijkCoords[i][0]}_${ijkCoords[i][1]}_${ijkCoords[i][2]}`;
// Start a new row for the current pixel
let row = `${pixelIdentifier},${segmentation.label}`;
// Add time data points for this pixel
for (let t = 0; t < timeData[i].length; t++) {
row += `,${timeData[i][t]}`;
}
// Append the row to the CSV array
csv.push(row);
}
}
});
// Convert to CSV string
const csvContent = csv.join('\n');
// Generate filename and trigger download
const filename = `${instance.PatientID}.csv`;
const blob = new Blob([csvContent], { type: 'text/csv;charset=utf-8;' });
const link = document.createElement('a');
const url = URL.createObjectURL(blob);
link.setAttribute('href', url);
link.setAttribute('download', filename);
link.style.visibility = 'hidden';
document.body.appendChild(link);
link.click();
document.body.removeChild(link);
},
swapDynamicWithComputedDisplaySet: ({ displaySet }) => {
const computedDisplaySet = displaySet;
const displaySetCache = displaySetService.getDisplaySetCache();
const cachedDisplaySetKeys = [displaySetCache.keys()];
const { displaySetInstanceUID } = computedDisplaySet;
// Check to see if computed display set is already in cache
if (!cachedDisplaySetKeys.includes(displaySetInstanceUID)) {
displaySetCache.set(displaySetInstanceUID, computedDisplaySet);
}
// Get all viewports and their corresponding indices
const { viewports } = viewportGridService.getState();
// get the viewports in the grid
// iterate over them and find the ones that are showing a dynamic
// volume (displaySet), and replace that exact displaySet with the
// computed displaySet
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
const viewportsToUpdate = [];
for (const [key, value] of viewports) {
const viewport = value;
const viewportOptions = viewport.viewportOptions;
const { displaySetInstanceUIDs } = viewport;
const displaySetInstanceUIDIndex = displaySetInstanceUIDs.indexOf(
dynamic4DDisplaySet.displaySetInstanceUID
);
if (displaySetInstanceUIDIndex !== -1) {
const newViewport = {
viewportId: viewport.viewportId,
// merge the other displaySetInstanceUIDs with the new one
displaySetInstanceUIDs: [
...displaySetInstanceUIDs.slice(0, displaySetInstanceUIDIndex),
displaySetInstanceUID,
...displaySetInstanceUIDs.slice(displaySetInstanceUIDIndex + 1),
],
viewportOptions: {
initialImageOptions: viewportOptions.initialImageOptions,
viewportType: 'volume',
orientation: viewportOptions.orientation,
background: viewportOptions.background,
},
};
viewportsToUpdate.push(newViewport);
}
}
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
},
swapComputedWithDynamicDisplaySet: () => {
// Todo: this assumes there is only one dynamic display set in the viewer
const dynamicDisplaySet = actions.getDynamic4DDisplaySet();
const displaySetCache = displaySetService.getDisplaySetCache();
const cachedDisplaySetKeys = [...displaySetCache.keys()]; // Fix: Spread to get the array
const { displaySetInstanceUID } = dynamicDisplaySet;
// Check to see if dynamic display set is already in cache
if (!cachedDisplaySetKeys.includes(displaySetInstanceUID)) {
displaySetCache.set(displaySetInstanceUID, dynamicDisplaySet);
}
// Get all viewports and their corresponding indices
const { viewports } = viewportGridService.getState();
// Get the computed 4D display set
const computed4DDisplaySet = actions.getComputedDisplaySets()[0];
const viewportsToUpdate = [];
for (const [key, value] of viewports) {
const viewport = value;
const viewportOptions = viewport.viewportOptions;
const { displaySetInstanceUIDs } = viewport;
const displaySetInstanceUIDIndex = displaySetInstanceUIDs.indexOf(
computed4DDisplaySet.displaySetInstanceUID
);
if (displaySetInstanceUIDIndex !== -1) {
const newViewport = {
viewportId: viewport.viewportId,
// merge the other displaySetInstanceUIDs with the new one
displaySetInstanceUIDs: [
...displaySetInstanceUIDs.slice(0, displaySetInstanceUIDIndex),
displaySetInstanceUID,
...displaySetInstanceUIDs.slice(displaySetInstanceUIDIndex + 1),
],
viewportOptions: {
initialImageOptions: viewportOptions.initialImageOptions,
viewportType: 'volume',
orientation: viewportOptions.orientation,
background: viewportOptions.background,
},
};
viewportsToUpdate.push(newViewport);
}
}
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
},
createNewLabelMapForDynamicVolume: async ({ label }) => {
const { viewports, activeViewportId } = viewportGridService.getState();
// get the dynamic 4D display set
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
const dynamic4DDisplaySetInstanceUID = dynamic4DDisplaySet.displaySetInstanceUID;
// check if the dynamic 4D display set is in the display, if not we might have
// the computed volumes and we should choose them for the segmentation
// creation
let referenceDisplaySet;
const activeViewport = viewports.get(activeViewportId);
const activeDisplaySetInstanceUIDs = activeViewport.displaySetInstanceUIDs;
const dynamicIsInActiveViewport = activeDisplaySetInstanceUIDs.includes(
dynamic4DDisplaySetInstanceUID
);
if (dynamicIsInActiveViewport) {
referenceDisplaySet = dynamic4DDisplaySet;
}
if (!referenceDisplaySet) {
// try to see if there is any derived displaySet in the active viewport
// which is referencing the dynamic 4D display set
// Todo: this is wrong but I don't have time to fix it now
const cachedDisplaySets = displaySetService.getDisplaySetCache();
for (const [key, displaySet] of cachedDisplaySets) {
if (displaySet.referenceDisplaySetUID === dynamic4DDisplaySetInstanceUID) {
referenceDisplaySet = displaySet;
break;
}
}
}
if (!referenceDisplaySet) {
throw new Error('No reference display set found based on the dynamic data');
}
const segmentationId = await segmentationService.createSegmentationForDisplaySet(
referenceDisplaySet.displaySetInstanceUID,
{ label }
);
// Add Segmentation to all toolGroupIds in the viewer
const toolGroupIds = Array.from(
viewports.values(),
viewport => viewport.viewportOptions.toolGroupId
);
const representationType = LABELMAP;
for (const toolGroupId of toolGroupIds) {
const hydrateSegmentation = true;
await segmentationService.addSegmentationRepresentationToToolGroup(
toolGroupId,
segmentationId,
hydrateSegmentation,
representationType
);
segmentationService.setActiveSegmentationForToolGroup(segmentationId, toolGroupId);
}
return segmentationId;
},
};
const definitions = {
updateSegmentationsChartDisplaySet: {
commandFn: actions.updateSegmentationsChartDisplaySet,
storeContexts: [],
options: {},
},
exportTimeReportCSV: {
commandFn: actions.exportTimeReportCSV,
storeContexts: [],
options: {},
},
swapDynamicWithComputedDisplaySet: {
commandFn: actions.swapDynamicWithComputedDisplaySet,
storeContexts: [],
options: {},
},
createNewLabelMapForDynamicVolume: {
commandFn: actions.createNewLabelMapForDynamicVolume,
storeContexts: [],
options: {},
},
swapComputedWithDynamicDisplaySet: {
commandFn: actions.swapComputedWithDynamicDisplaySet,
storeContexts: [],
options: {},
},
};
return {
actions,
definitions,
defaultContext: 'DYNAMIC-VOLUME:CORNERSTONE',
};
};
export default commandsModule;
@@ -0,0 +1,654 @@
const DEFAULT_COLORMAP = '2hot';
const toolGroupIds = {
pt: 'dynamic4D-pt',
fusion: 'dynamic4D-fusion',
ct: 'dynamic4D-ct',
};
function getPTOptions({
colormap,
voiInverted,
}: {
colormap?: {
name: string;
opacity:
| number
| {
value: number;
opacity: number;
}[];
};
voiInverted?: boolean;
} = {}) {
return {
blendMode: 'MIP',
colormap,
voi: {
windowWidth: 5,
windowCenter: 2.5,
},
voiInverted,
};
}
function getPTViewports() {
const ptOptionsParams = {
colormap: {
name: DEFAULT_COLORMAP,
opacity: [
{ value: 0, opacity: 0 },
{ value: 0.1, opacity: 1 },
{ value: 1, opacity: 1 },
],
},
voiInverted: false,
};
return [
{
viewportOptions: {
viewportId: 'ptAxial',
viewportType: 'volume',
orientation: 'axial',
toolGroupId: toolGroupIds.pt,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'axialSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ptWLSync',
source: true,
target: true,
},
],
},
displaySets: [
{
id: 'ptDisplaySet',
options: { ...getPTOptions(ptOptionsParams) },
},
],
},
{
viewportOptions: {
viewportId: 'ptSagittal',
viewportType: 'volume',
orientation: 'sagittal',
toolGroupId: toolGroupIds.pt,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'sagittalSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ptWLSync',
source: true,
target: true,
},
],
},
displaySets: [
{
id: 'ptDisplaySet',
options: { ...getPTOptions(ptOptionsParams) },
},
],
},
{
viewportOptions: {
viewportId: 'ptCoronal',
viewportType: 'volume',
orientation: 'coronal',
toolGroupId: toolGroupIds.pt,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'coronalSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ptWLSync',
source: true,
target: true,
},
],
},
displaySets: [
{
id: 'ptDisplaySet',
options: { ...getPTOptions(ptOptionsParams) },
},
],
},
];
}
function getFusionViewports() {
const ptOptionsParams = {
colormap: {
name: DEFAULT_COLORMAP,
opacity: [
{ value: 0, opacity: 0 },
{ value: 0.1, opacity: 0.3 },
{ value: 1, opacity: 0.3 },
],
},
};
return [
{
viewportOptions: {
viewportId: 'fusionAxial',
viewportType: 'volume',
orientation: 'axial',
toolGroupId: toolGroupIds.fusion,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'axialSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ctWLSync',
source: false,
target: true,
},
{
type: 'voi',
id: 'fusionWLSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ptFusionWLSync',
source: false,
target: true,
options: {
syncInvertState: false,
},
},
],
},
displaySets: [
{
id: 'ctDisplaySet',
},
{
options: { ...getPTOptions(ptOptionsParams) },
id: 'ptDisplaySet',
},
],
},
{
viewportOptions: {
viewportId: 'fusionSagittal',
viewportType: 'volume',
orientation: 'sagittal',
toolGroupId: toolGroupIds.fusion,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'sagittalSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ctWLSync',
source: false,
target: true,
},
{
type: 'voi',
id: 'fusionWLSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ptFusionWLSync',
source: false,
target: true,
options: {
syncInvertState: false,
},
},
],
},
displaySets: [
{
id: 'ctDisplaySet',
},
{
options: { ...getPTOptions(ptOptionsParams) },
id: 'ptDisplaySet',
},
],
},
{
viewportOptions: {
viewportId: 'fusionCoronal',
viewportType: 'volume',
orientation: 'coronal',
toolGroupId: toolGroupIds.fusion,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'coronalSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ctWLSync',
source: false,
target: true,
},
{
type: 'voi',
id: 'fusionWLSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ptFusionWLSync',
source: false,
target: true,
options: {
syncInvertState: false,
},
},
],
},
displaySets: [
{
id: 'ctDisplaySet',
},
{
options: { ...getPTOptions(ptOptionsParams) },
id: 'ptDisplaySet',
},
],
},
];
}
function getSeriesChartViewport() {
return {
viewportOptions: {
viewportId: 'seriesChart',
},
displaySets: [
{
id: 'chartDisplaySet',
options: {
// This dataset does not require the download of any instance since it is pre-computed locally,
// but interleaveTopToBottom.ts was not loading any series because it consider that all viewports
// are a Cornerstone viewport which is not true in this case and it waits for all viewports to
// have called interleaveTopToBottom(...).
skipLoading: true,
},
},
],
};
}
function getCTViewports() {
return [
{
viewportOptions: {
viewportId: 'ctAxial',
viewportType: 'volume',
orientation: 'axial',
toolGroupId: toolGroupIds.ct,
initialImageOptions: {
preset: 'middle', // 'first', 'last', 'middle'
},
syncGroups: [
{
type: 'cameraPosition',
id: 'axialSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ctWLSync',
source: true,
target: true,
},
],
},
displaySets: [
{
id: 'ctDisplaySet',
},
],
},
{
viewportOptions: {
viewportId: 'ctSagittal',
viewportType: 'volume',
orientation: 'sagittal',
toolGroupId: toolGroupIds.ct,
initialImageOptions: {
preset: 'middle',
},
syncGroups: [
{
type: 'cameraPosition',
id: 'sagittalSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ctWLSync',
source: true,
target: true,
},
],
},
displaySets: [
{
id: 'ctDisplaySet',
},
],
},
{
viewportOptions: {
viewportId: 'ctCoronal',
viewportType: 'volume',
orientation: 'coronal',
toolGroupId: toolGroupIds.ct,
initialImageOptions: {
preset: 'middle',
},
syncGroups: [
{
type: 'cameraPosition',
id: 'coronalSync',
source: true,
target: true,
},
{
type: 'voi',
id: 'ctWLSync',
source: true,
target: true,
},
],
},
displaySets: [
{
id: 'ctDisplaySet',
},
],
},
];
}
const defaultProtocol = {
id: 'default4D',
locked: true,
// Don't store this hanging protocol as it applies to the currently active
// display set by default
// cacheId: null,
hasUpdatedPriorsInformation: false,
name: 'Default',
createdDate: '2023-01-01T00:00:00.000Z',
modifiedDate: '2023-01-01T00:00:00.000Z',
availableTo: {},
editableBy: {},
imageLoadStrategy: 'default', // "default" , "interleaveTopToBottom", "interleaveCenter"
protocolMatchingRules: [
{
attribute: 'ModalitiesInStudy',
constraint: {
contains: ['CT', 'PT'],
},
},
],
// -1 would be used to indicate active only, whereas other values are
// the number of required priors referenced - so 0 means active with
// 0 or more priors.
numberOfPriorsReferenced: -1,
displaySetSelectors: {
defaultDisplaySetId: {
// Unused currently
imageMatchingRules: [],
// Matches displaysets, NOT series
seriesMatchingRules: [
// Try to match series with images by default, to prevent weird display
// on SEG/SR containing studies
{
attribute: 'numImageFrames',
constraint: {
greaterThan: { value: 0 },
},
},
],
// Can be used to select matching studies
// studyMatchingRules: [],
},
ctDisplaySet: {
// Unused currently
imageMatchingRules: [],
// Matches displaysets, NOT series
seriesMatchingRules: [
{
attribute: 'Modality',
constraint: {
equals: {
value: 'CT',
},
},
required: true,
},
{
attribute: 'isReconstructable',
constraint: {
equals: {
value: true,
},
},
required: true,
},
],
// Can be used to select matching studies
// studyMatchingRules: [],
},
ptDisplaySet: {
// Unused currently
imageMatchingRules: [],
// Matches displaysets, NOT series
seriesMatchingRules: [
{
attribute: 'Modality',
constraint: {
equals: 'PT',
},
required: true,
},
{
attribute: 'isReconstructable',
constraint: {
equals: {
value: true,
},
},
required: true,
},
{
attribute: 'SeriesDescription',
constraint: {
contains: 'Corrected',
},
},
{
weight: 2,
attribute: 'SeriesDescription',
constraint: {
doesNotContain: {
value: 'Uncorrected',
},
},
},
// Should we check if CorrectedImage contains ATTN?
// (0028,0051) (CorrectedImage): NORM\DTIM\ATTN\SCAT\RADL\DECY
],
// Can be used to select matching studies
// studyMatchingRules: [],
},
chartDisplaySet: {
// Unused currently
imageMatchingRules: [],
// Matches displaysets, NOT series
seriesMatchingRules: [
{
attribute: 'Modality',
constraint: {
equals: {
value: 'CHT',
},
},
required: true,
},
],
},
},
stages: [
{
id: 'dataPreparation',
name: 'Data Preparation',
viewportStructure: {
layoutType: 'grid',
properties: {
rows: 1,
columns: 3,
},
},
viewports: [...getPTViewports()],
createdDate: '2023-01-01T00:00:00.000Z',
},
{
id: 'registration',
name: 'Registration',
viewportStructure: {
layoutType: 'grid',
properties: {
rows: 3,
columns: 3,
},
},
viewports: [...getFusionViewports(), ...getCTViewports(), ...getPTViewports()],
createdDate: '2023-01-01T00:00:00.000Z',
},
{
id: 'roiQuantification',
name: 'ROI Quantification',
viewportStructure: {
layoutType: 'grid',
properties: {
rows: 1,
columns: 3,
},
},
viewports: [...getFusionViewports()],
createdDate: '2023-01-01T00:00:00.000Z',
},
{
id: 'kineticAnalysis',
name: 'Kinetic Analysis',
viewportStructure: {
layoutType: 'grid',
properties: {
rows: 2,
columns: 3,
layoutOptions: [
{
x: 0,
y: 0,
width: 1 / 3,
height: 1 / 2,
},
{
x: 1 / 3,
y: 0,
width: 1 / 3,
height: 1 / 2,
},
{
x: 2 / 3,
y: 0,
width: 1 / 3,
height: 1 / 2,
},
{
x: 0,
y: 1 / 2,
width: 1,
height: 1 / 2,
},
],
},
},
viewports: [...getFusionViewports(), getSeriesChartViewport()],
createdDate: '2023-01-01T00:00:00.000Z',
},
],
};
/**
* HangingProtocolModule should provide a list of hanging protocols that will be
* available in OHIF for Modes to use to decide on the structure of the viewports
* and also the series that hung in the viewports. Each hanging protocol is defined by
* { name, protocols}. Examples include the default hanging protocol provided by
* the default extension that shows 2x2 viewports.
*/
function getHangingProtocolModule() {
return [
{
name: defaultProtocol.id,
protocol: defaultProtocol,
},
];
}
export default getHangingProtocolModule;
@@ -0,0 +1,68 @@
import React from 'react';
import { DynamicDataPanel } from './panels';
import { Toolbox } from '@ohif/ui';
import DynamicExport from './panels/DynamicExport';
function getPanelModule({ commandsManager, extensionManager, servicesManager }) {
const wrappedDynamicDataPanel = () => {
return (
<DynamicDataPanel
commandsManager={commandsManager}
servicesManager={servicesManager}
extensionManager={extensionManager}
/>
);
};
const wrappedDynamicToolbox = () => {
return (
<>
<Toolbox
commandsManager={commandsManager}
servicesManager={servicesManager}
extensionManager={extensionManager}
buttonSectionId="dynamic-toolbox"
title="Threshold Tools"
/>
</>
);
};
const wrappedDynamicExport = () => {
return (
<>
<DynamicExport
commandsManager={commandsManager}
servicesManager={servicesManager}
extensionManager={extensionManager}
/>
</>
);
};
return [
{
name: 'dynamic-volume',
iconName: 'tab-4d',
iconLabel: '4D Workflow',
label: '4D Workflow',
component: wrappedDynamicDataPanel,
},
{
name: 'dynamic-toolbox',
iconName: 'tab-4d',
iconLabel: '4D Workflow',
label: 'Dynamic Toolbox',
component: wrappedDynamicToolbox,
},
{
name: 'dynamic-export',
iconName: 'tab-4d',
iconLabel: '4D Workflow',
label: '4D Workflow',
component: wrappedDynamicExport,
},
];
}
export default getPanelModule;
@@ -0,0 +1,6 @@
import packageJson from '../package.json';
const id = packageJson.name;
const SOPClassHandlerName = 'dynamic-volume';
export { id, SOPClassHandlerName };
@@ -0,0 +1,57 @@
import { id } from './id';
import commandsModule from './commandsModule';
import getPanelModule from './getPanelModule';
import getHangingProtocolModule from './getHangingProtocolModule';
import { cache } from '@cornerstonejs/core';
/**
* You can remove any of the following modules if you don't need them.
*/
const dynamicVolumeExtension = {
/**
* Only required property. Should be a unique value across all extensions.
* You ID can be anything you want, but it should be unique.
*/
id,
/**
* Perform any pre-registration tasks here. This is called before the extension
* is registered. Usually we run tasks such as: configuring the libraries
* (e.g. cornerstone, cornerstoneTools, ...) or registering any services that
* this extension is providing.
*/
preRegistration: ({ servicesManager, commandsManager, configuration = {} }) => {
// TODO: look for the right fix
cache.setMaxCacheSize(5 * 1024 * 1024 * 1024);
},
/**
* PanelModule should provide a list of panels that will be available in OHIF
* for Modes to consume and render. Each panel is defined by a {name,
* iconName, iconLabel, label, component} object. Example of a panel module
* is the StudyBrowserPanel that is provided by the default extension in OHIF.
*/
getPanelModule,
/**
* ViewportModule should provide a list of viewports that will be available in OHIF
* for Modes to consume and use in the viewports. Each viewport is defined by
* {name, component} object. Example of a viewport module is the CornerstoneViewport
* that is provided by the Cornerstone extension in OHIF.
*/
getHangingProtocolModule,
/**
* CommandsModule should provide a list of commands that will be available in OHIF
* for Modes to consume and use in the viewports. Each command is defined by
* an object of { actions, definitions, defaultContext } where actions is an
* object of functions, definitions is an object of available commands, their
* options, and defaultContext is the default context for the command to run against.
*/
getCommandsModule: ({ servicesManager, commandsManager, extensionManager }) => {
return commandsModule({
servicesManager,
commandsManager,
extensionManager,
});
},
};
export { dynamicVolumeExtension as default };
@@ -0,0 +1,18 @@
import React from 'react';
import PanelGenerateImage from './PanelGenerateImage';
function DynamicDataPanel({ servicesManager, commandsManager }) {
return (
<div
className="flex flex-col text-white"
data-cy={'dynamic-volume-panel'}
>
<PanelGenerateImage
commandsManager={commandsManager}
servicesManager={servicesManager}
></PanelGenerateImage>
</div>
);
}
export default DynamicDataPanel;
@@ -0,0 +1,76 @@
import React, { useState, useEffect } from 'react';
import { ActionButtons } from '@ohif/ui';
import { useTranslation } from 'react-i18next';
function DynamicExport({ commandsManager, servicesManager, extensionManager }) {
const { segmentationService } = servicesManager.services;
const { t } = useTranslation('dynamicExport');
const [segmentations, setSegmentations] = useState(() => segmentationService.getSegmentations());
const actions = [
{
label: 'Export Time Data',
onClick: () => {
commandsManager.runCommand('exportTimeReportCSV', {
segmentations,
options: {
filename: 'TimeData.csv',
},
});
},
disabled: !segmentations?.length,
},
{
label: 'Export ROI Stats',
onClick: () => {
commandsManager.runCommand('exportTimeReportCSV', {
segmentations,
summaryStats: true,
options: {
filename: 'ROIStats.csv',
},
});
},
disabled: !segmentations?.length,
},
];
/**
* Update UI based on segmentation changes (added, removed, updated)
*/
useEffect(() => {
// ~~ Subscription
const added = segmentationService.EVENTS.SEGMENTATION_ADDED;
const updated = segmentationService.EVENTS.SEGMENTATION_UPDATED;
const removed = segmentationService.EVENTS.SEGMENTATION_REMOVED;
const subscriptions = [];
[added, updated, removed].forEach(evt => {
const { unsubscribe } = segmentationService.subscribe(evt, () => {
const segmentations = segmentationService.getSegmentations();
setSegmentations(segmentations);
});
subscriptions.push(unsubscribe);
});
return () => {
subscriptions.forEach(unsub => {
unsub();
});
};
}, []);
return (
<div>
<div className="mt-3 flex justify-center px-2">
<ActionButtons
actions={actions}
t={t}
/>
</div>
</div>
);
}
export default DynamicExport;
@@ -0,0 +1,241 @@
import React, { useEffect, useState } from 'react';
import {
InputDoubleRange,
Button,
PanelSection,
ButtonGroup,
IconButton,
InputNumber,
Icon,
Tooltip,
} from '@ohif/ui';
import { Enums } from '@cornerstonejs/core';
const controlClassNames = {
sizeClassName: 'w-[58px] h-[28px]',
arrowsDirection: 'horizontal',
labelPosition: 'bottom',
};
const Header = ({ title, tooltip }) => (
<div className="flex items-center space-x-1">
<Tooltip
content={<div className="text-white">{tooltip}</div>}
position="bottom-left"
tight={true}
tooltipBoxClassName="max-w-xs p-2"
>
<Icon
name="info-link"
className="text-primary-active h-[14px] w-[14px]"
/>
</Tooltip>
<span className="text-aqua-pale text-[11px] uppercase">{title}</span>
</div>
);
const DynamicVolumeControls = ({
isPlaying,
onPlayPauseChange,
// fps
fps,
onFpsChange,
minFps,
maxFps,
// Frames
currentFrameIndex,
onFrameChange,
framesLength,
onGenerate,
onDoubleRangeChange,
onDynamicClick,
}) => {
const [computedView, setComputedView] = useState(false);
const [computeViewMode, setComputeViewMode] = useState(Enums.DynamicOperatorType.SUM);
const [sliderRangeValues, setSliderRangeValues] = useState([framesLength / 4, framesLength / 2]);
useEffect(() => {
setSliderRangeValues([framesLength / 4, framesLength / 2]);
}, [framesLength]);
const handleSliderChange = newValues => {
onDoubleRangeChange(newValues);
if (newValues[0] === sliderRangeValues[0] && newValues[1] === sliderRangeValues[1]) {
return;
}
setSliderRangeValues(newValues);
};
return (
<div className="flex select-none flex-col">
<PanelSection
title="Controls"
childrenClassName="space-y-4 pb-5 px-5"
>
<div className="mt-2">
<Header
title="View"
tooltip={
'Select the view mode, 4D to view the dynamic volume or Computed to view the computed volume'
}
/>
<ButtonGroup className="mt-2 w-full">
<button
className="w-1/2"
onClick={() => {
setComputedView(false);
onDynamicClick?.();
}}
>
4D
</button>
<button
className="w-1/2"
onClick={() => {
setComputedView(true);
}}
>
Computed
</button>
</ButtonGroup>
</div>
<div>
<FrameControls
onPlayPauseChange={onPlayPauseChange}
isPlaying={isPlaying}
computedView={computedView}
// fps
fps={fps}
onFpsChange={onFpsChange}
minFps={minFps}
maxFps={maxFps}
//
framesLength={framesLength}
onFrameChange={onFrameChange}
currentFrameIndex={currentFrameIndex}
/>
</div>
<div className={`mt-6 flex flex-col ${computedView ? '' : 'ohif-disabled'}`}>
<Header
title="Computed Operation"
tooltip={
<div>
Operation Buttons (SUM, AVERAGE, SUBTRACT): Select the mathematical operation to be
applied to the data set.
<br></br> Range Slider: Choose the numeric range within which the operation will be
performed.
<br></br>Generate Button: Execute the chosen operation on the specified range of
data.{' '}
</div>
}
/>
<ButtonGroup
className={`mt-2 w-full `}
separated={true}
>
<button
className="w-1/2"
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUM)}
>
{Enums.DynamicOperatorType.SUM.toString().toUpperCase()}
</button>
<button
className="w-1/2"
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.AVERAGE)}
>
{Enums.DynamicOperatorType.AVERAGE.toString().toUpperCase()}
</button>
<button
className="w-1/2"
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUBTRACT)}
>
{Enums.DynamicOperatorType.SUBTRACT.toString().toUpperCase()}
</button>
</ButtonGroup>
<div className="w-ful mt-2">
<InputDoubleRange
values={sliderRangeValues}
onChange={handleSliderChange}
minValue={0}
showLabel={true}
allowNumberEdit={true}
maxValue={framesLength}
step={1}
/>
</div>
<Button
className="mt-2 !h-[26px] !w-[115px] self-start !p-0"
onClick={() => {
onGenerate(computeViewMode);
}}
>
Generate
</Button>
</div>
</PanelSection>
</div>
);
};
export default DynamicVolumeControls;
function FrameControls({
isPlaying,
onPlayPauseChange,
fps,
minFps,
maxFps,
onFpsChange,
framesLength,
onFrameChange,
currentFrameIndex,
computedView,
}) {
const getPlayPauseIconName = () => (isPlaying ? 'icon-pause' : 'icon-play');
return (
<div className={computedView && 'ohif-disabled'}>
<Header
title="4D Controls"
tooltip={
<div>
Play/Pause Button: Begin or pause the animation of the 4D visualization. <br></br> Frame
Selector: Navigate through individual frames of the 4D data. <br></br> FPS (Frames Per
Second) Selector: Adjust the playback speed of the animation.
</div>
}
/>
<div className="mt-3 flex justify-between">
<IconButton
className="bg-customblue-30 h-[26px] w-[58px] rounded-[4px]"
onClick={() => onPlayPauseChange(!isPlaying)}
>
<Icon
name={getPlayPauseIconName()}
className=" active:text-primary-light hover:bg-customblue-300 h-[24px] w-[24px] cursor-pointer text-white"
/>
</IconButton>
<InputNumber
value={currentFrameIndex}
onChange={onFrameChange}
minValue={0}
maxValue={framesLength}
label="Frame"
{...controlClassNames}
/>
<InputNumber
value={fps}
onChange={onFpsChange}
minValue={minFps}
maxValue={maxFps}
{...controlClassNames}
label="FPS"
/>
</div>
</div>
);
}
@@ -0,0 +1,71 @@
import React from 'react';
import { InputDoubleRange } from '@ohif/ui';
import { Select } from '@ohif/ui';
import { Button } from '@ohif/ui';
import PropTypes from 'prop-types';
const GenerateVolume = ({
rangeValues,
handleSliderChange,
operationsUI,
options,
handleGenerateOptionsChange,
onGenerateImage,
returnTo4D,
displayingComputedVolume,
}) => {
return (
<>
<div>
<div className="mb-2 text-white">Computed Image</div>
<Select
closeMenuOnSelect={true}
className="border-primary-main mr-2 bg-black text-white "
options={operationsUI}
placeholder={operationsUI.find(option => option.value === options.Operation).placeHolder}
value={options.Operation}
onChange={({ value }) => {
handleGenerateOptionsChange({
Operation: value,
});
}}
/>
<InputDoubleRange
values={rangeValues}
onChange={handleSliderChange}
minValue={rangeValues[0] || 1}
maxValue={rangeValues[1] || 2}
showLabel={true}
step={1}
/>
<div className="flex space-x-2">
<Button
onClick={onGenerateImage}
className="w-1/2"
>
Generate
</Button>
<Button
onClick={returnTo4D}
disabled={!displayingComputedVolume}
className="w-1/2"
>
Return To 4D
</Button>
</div>
</div>
</>
);
};
GenerateVolume.propTypes = {
rangeValues: PropTypes.array.isRequired,
handleSliderChange: PropTypes.func.isRequired,
operationsUI: PropTypes.array.isRequired,
options: PropTypes.object.isRequired,
handleGenerateOptionsChange: PropTypes.func.isRequired,
onGenerateImage: PropTypes.func.isRequired,
returnTo4D: PropTypes.func.isRequired,
};
export default GenerateVolume;
@@ -0,0 +1,275 @@
import React, { useEffect, useState, useRef } from 'react';
import PropTypes from 'prop-types';
import { useCine, useViewportGrid } from '@ohif/ui';
import { cache, utilities as csUtils, volumeLoader, eventTarget } from '@cornerstonejs/core';
import { Enums } from '@cornerstonejs/streaming-image-volume-loader';
import { utilities as cstUtils } from '@cornerstonejs/tools';
import DynamicVolumeControls from './DynamicVolumeControls';
const SOPClassHandlerId = '@ohif/extension-default.sopClassHandlerModule.stack';
export default function PanelGenerateImage({ servicesManager, commandsManager }) {
const { cornerstoneViewportService, viewportGridService, displaySetService } =
servicesManager.services;
const [{ isCineEnabled }, cineService] = useCine();
const [{ activeViewportId }] = useViewportGrid();
//
const [timePointsRange, setTimePointsRange] = useState([]);
const [timePointsRangeToUseForGenerate, setTimePointsRangeToUseForGenerate] = useState([]);
const [computedDisplaySet, setComputedDisplaySet] = useState(null);
const [dynamicVolume, setDynamicVolume] = useState(null);
const [frameRate, setFrameRate] = useState(20);
const [isPlaying, setIsPlaying] = useState(isCineEnabled);
const [timePointRendered, setTimePointRendered] = useState(null);
const [displayingComputed, setDisplayingComputed] = useState(false);
//
const uuidComputedVolume = useRef(csUtils.uuidv4());
const uuidDynamicVolume = useRef(null);
const computedVolumeId = `cornerstoneStreamingImageVolume:${uuidComputedVolume.current}`;
useEffect(() => {
const evt = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
const { unsubscribe } = cornerstoneViewportService.subscribe(evt, evtDetails => {
evtDetails.viewportData.data.forEach(volumeData => {
if (volumeData.volume.isDynamicVolume()) {
setDynamicVolume(volumeData.volume);
uuidDynamicVolume.current = volumeData.displaySetInstanceUID;
setTimePointsRange([1, volumeData.volume.numTimePoints]);
}
});
});
return () => {
unsubscribe();
};
}, [cornerstoneViewportService]);
useEffect(() => {
const { unsubscribe } = servicesManager.services.cineService.subscribe(
servicesManager.services.cineService.EVENTS.CINE_STATE_CHANGED,
evt => {
setIsPlaying(evt.isPlaying);
}
);
return () => {
unsubscribe();
};
}, [cineService]);
useEffect(() => {
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(activeViewportId);
if (!displaySetUIDs || displaySetUIDs.length === 0) {
return;
}
const displaySets = displaySetUIDs.map(displaySetUID =>
displaySetService.getDisplaySetByUID(displaySetUID)
);
const dynamicVolumeDisplaySet = displaySets.find(displaySet => displaySet.isDynamicVolume);
if (!dynamicVolumeDisplaySet) {
return;
}
const dynamicVolume = cache
.getVolumes()
.find(volume => volume.volumeId.includes(dynamicVolumeDisplaySet.displaySetInstanceUID));
if (!dynamicVolume) {
return;
}
setDynamicVolume(dynamicVolume);
uuidDynamicVolume.current = dynamicVolumeDisplaySet.displaySetInstanceUID;
setTimePointsRange([1, dynamicVolume.numTimePoints]);
}, [activeViewportId, cornerstoneViewportService]);
useEffect(() => {
// ~~ Subscription
const evt = Enums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED;
const callback = evt => {
setTimePointRendered(evt.detail.timePointIndex);
};
eventTarget.addEventListener(evt, callback);
return () => {
eventTarget.removeEventListener(evt, callback);
};
}, [cornerstoneViewportService]);
function renderGeneratedImage(displaySet) {
commandsManager.runCommand('swapDynamicWithComputedDisplaySet', {
displaySet,
});
setDisplayingComputed(true);
}
function renderDynamicImage(displaySet) {
commandsManager.runCommand('swapComputedWithDynamicDisplaySet');
}
// Get computed volume from cache, calculate the data across the time frames,
// set the scalar data to the computedVolume, and create displaySet
async function onGenerateImage(operationName) {
const dynamicVolumeId = dynamicVolume.volumeId;
if (!dynamicVolumeId) {
return;
}
let computedVolume = cache.getVolume(computedVolumeId);
if (!computedVolume) {
await createComputedVolume(dynamicVolumeId, computedVolumeId);
computedVolume = cache.getVolume(computedVolumeId);
}
const vals = timePointsRangeToUseForGenerate;
const targets = Array.from({ length: vals[1] - vals[0] + 1 }, (_, i) => i + vals[0]);
const dataInTime = cstUtils.dynamicVolume.generateImageFromTimeData(
dynamicVolume,
operationName,
operationName === 'SUBTRACT' ? vals : targets
);
// Add loadStatus.loaded to computed volume and set to true
computedVolume.loadStatus = {};
computedVolume.loadStatus.loaded = true;
// Set computed scalar data to volume
const scalarData = computedVolume.getScalarData();
scalarData.set(dataInTime);
// If computed display set does not exist, create an object to be used as
// the displaySet. If it does exist, update the image data and vtkTexture
if (!computedDisplaySet) {
const displaySet = {
volumeLoaderSchema: computedVolume.volumeId.split(':')[0],
displaySetInstanceUID: uuidComputedVolume.current,
SOPClassHandlerId: SOPClassHandlerId,
Modality: dynamicVolume.metadata.Modality,
isMultiFrame: false,
numImageFrames: 1,
uid: uuidComputedVolume.current,
referenceDisplaySetUID: dynamicVolume.volumeId.split(':')[1],
madeInClient: true,
FrameOfReferenceUID: dynamicVolume.metadata.FrameOfReferenceUID,
isDerived: true,
};
setComputedDisplaySet(displaySet);
renderGeneratedImage(displaySet);
} else {
commandsManager.runCommand('updateVolumeData', {
volume: computedVolume,
});
// Check if viewport is currently displaying the computed volume, if so,
// call render on the viewports to update the image, if not, call
// renderGeneratedImage
// if (!cache.getVolume(dynamicVolumeId)) {
// for (const viewportId of viewports.keys()) {
// const viewportForRendering =
// cornerstoneViewportService.getCornerstoneViewport(viewportId);
// viewportForRendering.render();
// }
// } else {
cornerstoneViewportService.getRenderingEngine().render();
renderGeneratedImage(computedDisplaySet);
// }
}
}
const onPlayPauseChange = isPlaying => {
isPlaying ? handlePlay() : handleStop();
};
const handlePlay = () => {
setIsPlaying(true);
const viewportInfo = cornerstoneViewportService.getViewportInfo(activeViewportId);
if (!viewportInfo) {
return;
}
const { element } = viewportInfo;
cineService.playClip(element, { framesPerSecond: frameRate, viewportId: activeViewportId });
};
const handleStop = () => {
setIsPlaying(false);
const { element } = cornerstoneViewportService.getViewportInfo(activeViewportId);
cineService.stopClip(element);
};
const handleSetFrameRate = newFrameRate => {
setFrameRate(newFrameRate);
handleStop();
handlePlay();
};
function handleSliderChange(newValues) {
if (
newValues[0] === timePointsRangeToUseForGenerate[0] &&
newValues[1] === timePointsRangeToUseForGenerate[1]
) {
return;
}
setTimePointsRangeToUseForGenerate(newValues);
}
if (!dynamicVolume || timePointsRange.length === 0) {
return null;
}
return (
<DynamicVolumeControls
fps={frameRate}
isPlaying={isPlaying}
onPlayPauseChange={onPlayPauseChange}
minFps={1}
maxFps={50}
currentFrameIndex={timePointRendered}
onFpsChange={handleSetFrameRate}
framesLength={timePointsRange[1]}
onFrameChange={timePointIndex => {
dynamicVolume.timePointIndex = timePointIndex;
}}
onGenerate={onGenerateImage}
onDynamicClick={displayingComputed ? () => renderDynamicImage(computedDisplaySet) : null}
onDoubleRangeChange={handleSliderChange}
/>
);
}
async function createComputedVolume(dynamicVolumeId, computedVolumeId) {
if (!cache.getVolume(computedVolumeId)) {
const computedVolume = await volumeLoader.createAndCacheDerivedVolume(dynamicVolumeId, {
volumeId: computedVolumeId,
});
return computedVolume;
}
}
PanelGenerateImage.propTypes = {
servicesManager: PropTypes.shape({
services: PropTypes.shape({
measurementService: PropTypes.shape({
getMeasurements: PropTypes.func.isRequired,
subscribe: PropTypes.func.isRequired,
EVENTS: PropTypes.object.isRequired,
VALUE_TYPES: PropTypes.object.isRequired,
}).isRequired,
}).isRequired,
}).isRequired,
};
@@ -0,0 +1,27 @@
import React, { useMemo } from 'react';
function WorkflowPanel({ servicesManager, extensionManager }) {
const ProgressDropdownWithService = useMemo(() => {
const defaultComponents = extensionManager.getModuleEntry(
'@ohif/extension-default.customizationModule.default'
).value;
return defaultComponents.find(
component => component.id === 'progressDropdownWithServiceComponent'
).component;
}, [extensionManager]);
return (
<div
data-cy={'workflow-panel'}
className="bg-secondary-dark mb-1 px-3 py-4"
>
<div className="mb-1">Workflow</div>
<div>
<ProgressDropdownWithService servicesManager={servicesManager} />
</div>
</div>
);
}
export default WorkflowPanel;
@@ -0,0 +1,5 @@
import DynamicDataPanel from './DynamicDataPanel';
import WorkflowPanel from './WorkflowPanel';
import PanelGenerateImage from './PanelGenerateImage';
export { DynamicDataPanel, WorkflowPanel, PanelGenerateImage };
+233
View File
@@ -3,6 +3,239 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
### Bug Fixes
* **toolbox:** Preserve user-specified tool state and streamline command execution ([#4063](https://github.com/OHIF/Viewers/issues/4063)) ([f1a736d](https://github.com/OHIF/Viewers/commit/f1a736d1934733a434cb87b2c284907a3122403f))
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
### Bug Fixes
* **bugs:** fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change ([#4068](https://github.com/OHIF/Viewers/issues/4068)) ([c09311d](https://github.com/OHIF/Viewers/commit/c09311d3b7df05fcd00a9f36a7233e9d7e5589d0))
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
### Bug Fixes
* **viewport-sync:** Enable re-sync image slices in a different position when needed ([#3984](https://github.com/OHIF/Viewers/issues/3984)) ([6ebd2cc](https://github.com/OHIF/Viewers/commit/6ebd2cc7cb70cd88fd01dc1e516077f27b201943))
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
### Bug Fixes
* **vewport:** Add missing blendmodes from cornerstonejs ([#4055](https://github.com/OHIF/Viewers/issues/4055)) ([3ec7e51](https://github.com/OHIF/Viewers/commit/3ec7e512169a07506388902acb5b2c118093fa50))
* **viewport-webworker-segmentation:** Resolve issues with viewport detection, webworker termination, and segmentation panel layout change ([#4059](https://github.com/OHIF/Viewers/issues/4059)) ([52a0c59](https://github.com/OHIF/Viewers/commit/52a0c59294a4161fcca0a6708855549034849951))
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
### Bug Fixes
* **hp:** Fails to display any layouts in the layout selector if first layout has multiple stages ([#4058](https://github.com/OHIF/Viewers/issues/4058)) ([f0ed3fd](https://github.com/OHIF/Viewers/commit/f0ed3fd7b99b0e4e00b261ceb9888ba94726719c))
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
### Features
* **tmtv-mode:** Add Brush tools and move SUV peak calculation to web worker ([#4053](https://github.com/OHIF/Viewers/issues/4053)) ([8192e34](https://github.com/OHIF/Viewers/commit/8192e348eca993fec331d4963efe88f9a730eceb))
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
### Bug Fixes
* **layouts:** and fix thumbnail in touch and update migration guide for 3.8 release ([#4052](https://github.com/OHIF/Viewers/issues/4052)) ([d250d04](https://github.com/OHIF/Viewers/commit/d250d04580883446fcb8d748b2a97c5c198922af))
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
### Bug Fixes
* **bugs:** and replace seriesInstanceUID and seriesInstanceUIDs URL with seriesInstanceUIDs ([#4049](https://github.com/OHIF/Viewers/issues/4049)) ([da7c1a5](https://github.com/OHIF/Viewers/commit/da7c1a5d8c54bfa1d3f97bbc500386bf76e7fd9d))
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
### Bug Fixes
* **bugs:** enhancements and bug fixes - final ([#4048](https://github.com/OHIF/Viewers/issues/4048)) ([170bb96](https://github.com/OHIF/Viewers/commit/170bb96983082c39b22b7352e0c54aacf3e73b02))
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
### Bug Fixes
* **bugs:** enhancements and bug fixes - more ([#4043](https://github.com/OHIF/Viewers/issues/4043)) ([3754c22](https://github.com/OHIF/Viewers/commit/3754c224b4dab28182adb0a41e37d890942144d8))
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
### Bug Fixes
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
### Bug Fixes
* **bugs:** enhancements and bug fixes ([#4036](https://github.com/OHIF/Viewers/issues/4036)) ([e80fc6f](https://github.com/OHIF/Viewers/commit/e80fc6f47708e1d6b1a1e1de438196a4b74ec637))
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
### Features
* **SM:** remove SM measurements from measurement panel ([#4022](https://github.com/OHIF/Viewers/issues/4022)) ([df49a65](https://github.com/OHIF/Viewers/commit/df49a653be61a93f6e9fb3663aabe9775c31fd13))
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
### Bug Fixes
* **general:** enhancements and bug fixes ([#4018](https://github.com/OHIF/Viewers/issues/4018)) ([2b83393](https://github.com/OHIF/Viewers/commit/2b83393f91cb16ea06821d79d14ff60f80c29c90))
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
### Features
* **4D:** Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode ([#3664](https://github.com/OHIF/Viewers/issues/3664)) ([d57e8bc](https://github.com/OHIF/Viewers/commit/d57e8bc1571c6da4effaa492ee2d162c552365a2))
# [3.8.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.72...v3.8.0-beta.73) (2024-04-08)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [3.8.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.71...v3.8.0-beta.72) (2024-04-05)
### Bug Fixes
* **cornerstone-dicom-sr:** Freehand SR hydration support ([#3996](https://github.com/OHIF/Viewers/issues/3996)) ([5645ac1](https://github.com/OHIF/Viewers/commit/5645ac1b271e1ed8c57f5d71100809362447267e))
# [3.8.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.70...v3.8.0-beta.71) (2024-04-05)
+10 -9
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone",
"version": "3.8.0-beta.71",
"version": "3.8.0",
"description": "OHIF extension for Cornerstone",
"author": "OHIF",
"license": "MIT",
@@ -38,10 +38,10 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.67.0",
"@cornerstonejs/dicom-image-loader": "^1.70.14",
"@icr/polyseg-wasm": "^0.4.0",
"@ohif/core": "3.8.0-beta.71",
"@ohif/ui": "3.8.0-beta.71",
"@ohif/core": "3.8.0",
"@ohif/ui": "3.8.0",
"dcmjs": "^0.29.12",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
@@ -55,11 +55,12 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.67.0",
"@cornerstonejs/core": "^1.67.0",
"@cornerstonejs/streaming-image-volume-loader": "^1.67.0",
"@cornerstonejs/tools": "^1.67.0",
"@kitware/vtk.js": "29.7.0",
"@cornerstonejs/adapters": "^1.70.14",
"@cornerstonejs/core": "^1.70.14",
"@cornerstonejs/streaming-image-volume-loader": "^1.70.14",
"@cornerstonejs/tools": "^1.70.14",
"@icr/polyseg-wasm": "^0.4.0",
"@kitware/vtk.js": "30.4.1",
"html2canvas": "^1.4.1",
"lodash.debounce": "4.0.8",
"lodash.merge": "^4.6.2",
@@ -10,7 +10,7 @@ import {
utilities as csUtils,
} from '@cornerstonejs/core';
import { MeasurementService } from '@ohif/core';
import { Notification, useViewportDialog, Types as UITypes, AllInOneMenu } from '@ohif/ui';
import { Notification, useViewportDialog, AllInOneMenu } from '@ohif/ui';
import { IStackViewport, IVolumeViewport } from '@cornerstonejs/core/dist/esm/types';
import { setEnabledElement } from '../state';
@@ -114,10 +114,28 @@ const OHIFCornerstoneViewport = React.memo(props => {
// of the imageData in the OHIFCornerstoneViewport. This prop is used
// to set the initial state of the viewport's first image to render
initialImageIndex,
onReady,
// if the viewport is part of a hanging protocol layout
// we should not really rely on the old synchronizers and
// you see below we only rehydrate the synchronizers if the viewport
// is not part of the hanging protocol layout. HPs should
// define their own synchronizers. Since the synchronizers are
// viewportId dependent and
isHangingProtocolLayout,
} = props;
const viewportId = viewportOptions.viewportId;
if (!viewportId) {
throw new Error('Viewport ID is required');
}
// Since we only have support for dynamic data in volume viewports, we should
// handle this case here and set the viewportType to volume if any of the
// displaySets are dynamic volumes
viewportOptions.viewportType = displaySets.some(ds => ds.isDynamicVolume && ds.isReconstructable)
? 'volume'
: viewportOptions.viewportType;
const [scrollbarHeight, setScrollbarHeight] = useState('100px');
const [enabledVPElement, setEnabledVPElement] = useState(null);
const elementRef = useRef();
@@ -134,7 +152,6 @@ const OHIFCornerstoneViewport = React.memo(props => {
viewportGridService,
stateSyncService,
viewportActionCornersService,
customizationService,
} = servicesManager.services as CornerstoneServices;
const [viewportDialogState] = useViewportDialog();
@@ -188,14 +205,13 @@ const OHIFCornerstoneViewport = React.memo(props => {
const synchronizersStore = stateSyncService.getState().synchronizersStore;
if (synchronizersStore?.[viewportId]?.length) {
if (synchronizersStore?.[viewportId]?.length && !isHangingProtocolLayout) {
// If the viewport used to have a synchronizer, re apply it again
_rehydrateSynchronizers(synchronizersStore, viewportId, syncGroupService);
}
if (onElementEnabled) {
onElementEnabled(evt);
onReady?.(evt);
}
},
[viewportId, onElementEnabled, toolGroupService]
@@ -436,6 +452,7 @@ const OHIFCornerstoneViewport = React.memo(props => {
actions={viewportDialogState.actions}
onSubmit={viewportDialogState.onSubmit}
onOutsideClick={viewportDialogState.onOutsideClick}
onKeyPress={viewportDialogState.onKeyPress}
/>
)}
</div>
@@ -468,7 +485,10 @@ function _subscribeToJumpToMeasurementEvents(
cornerstoneViewportService.getViewportIdToJump(
jumpId,
measurement.displaySetInstanceUID,
{ referencedImageId: measurement.referencedImageId }
{
referencedImageId:
measurement.referencedImageId || measurement.metadata?.referencedImageId,
}
);
}
if (cacheJumpToMeasurementEvent.cornerstoneViewport !== viewportId) {
@@ -577,6 +597,9 @@ function _jumpToMeasurement(
i => i.SOPInstanceUID === SOPInstanceUID
);
// the index is reversed in the volume viewport
// imageIdIndex = referencedDisplaySet.images.length - 1 - imageIdIndex;
const { viewPlaneNormal: viewportViewPlane } = viewport.getCamera();
// should compare abs for both planes since the direction can be flipped
@@ -322,7 +322,7 @@ function _getViewportInstances(viewportData) {
} else if (viewportData.viewportType === Enums.ViewportType.ORTHOGRAPHIC) {
const volumes = viewportData.data;
volumes.forEach(volume => {
if (!volume?.imageIds) {
if (!volume?.imageIds || volume.imageIds.length === 0) {
return;
}
imageIds.push(volume.imageIds[0]);
@@ -23,7 +23,7 @@ function CornerstoneImageScrollbar({
if (isCineEnabled) {
// on image scrollbar change, stop the CINE if it is playing
cineService.stopClip(element);
cineService.stopClip(element, { viewportId });
cineService.setCine({ id: viewportId, isPlaying: false });
}
+81 -20
View File
@@ -51,6 +51,12 @@ function commandsModule({
function _getActiveViewportEnabledElement() {
return getActiveViewportEnabledElement(viewportGridService);
}
function _getActiveViewportToolGroupId() {
const viewport = _getActiveViewportEnabledElement();
return toolGroupService.getToolGroupForViewport(viewport.id);
}
const actions = {
/**
* Generates the selector props for the context menu, specific to
@@ -126,16 +132,12 @@ function commandsModule({
? nearbyToolData
: null;
},
// Measurement tool commands:
/** Delete the given measurement */
deleteMeasurement: ({ uid }) => {
if (uid) {
measurementServiceSource.remove(uid);
}
},
/**
* Show the measurement labelling input dialog and update the label
* on the measurement with a response if not cancelled.
@@ -279,16 +281,16 @@ function commandsModule({
actions.setViewportWindowLevel({ ...props, viewportId });
},
setToolEnabled: ({ toolName, toggle }) => {
setToolEnabled: ({ toolName, toggle, toolGroupId }) => {
const { viewports } = viewportGridService.getState();
if (!viewports.size) {
return;
}
const toolGroup = toolGroupService.getToolGroup(null);
const toolGroup = toolGroupService.getToolGroup(toolGroupId ?? null);
if (!toolGroup) {
if (!toolGroup || !toolGroup.hasTool(toolName)) {
return;
}
@@ -297,14 +299,56 @@ function commandsModule({
// Toggle the tool's state only if the toggle is true
if (toggle) {
toolIsEnabled ? toolGroup.setToolDisabled(toolName) : toolGroup.setToolEnabled(toolName);
} else {
toolGroup.setToolEnabled(toolName);
}
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
renderingEngine.render();
},
setToolActiveToolbar: ({ value, itemId, toolGroupIds = [] }) => {
// Sometimes it is passed as value (tools with options), sometimes as itemId (toolbar buttons)
toggleEnabledDisabledToolbar({ value, itemId, toolGroupId }) {
const toolName = itemId || value;
toolGroupId = toolGroupId ?? _getActiveViewportToolGroupId();
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
if (!toolGroup || !toolGroup.hasTool(toolName)) {
return;
}
const toolIsEnabled = toolGroup.getToolOptions(toolName).mode === Enums.ToolModes.Enabled;
toolIsEnabled ? toolGroup.setToolDisabled(toolName) : toolGroup.setToolEnabled(toolName);
},
toggleActiveDisabledToolbar({ value, itemId, toolGroupId }) {
const toolName = itemId || value;
toolGroupId = toolGroupId ?? _getActiveViewportToolGroupId();
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
if (!toolGroup || !toolGroup.hasTool(toolName)) {
return;
}
const toolIsActive = [
Enums.ToolModes.Active,
Enums.ToolModes.Enabled,
Enums.ToolModes.Passive,
].includes(toolGroup.getToolOptions(toolName).mode);
toolIsActive
? toolGroup.setToolDisabled(toolName)
: actions.setToolActive({ toolName, toolGroupId });
// we should set the previously active tool to active after we set the
// current tool disabled
if (toolIsActive) {
const prevToolName = toolGroup.getPrevActivePrimaryToolName();
if (prevToolName !== toolName) {
actions.setToolActive({ toolName: prevToolName, toolGroupId });
}
}
},
setToolActiveToolbar: ({ value, itemId, toolName, toolGroupIds = [] }) => {
// Sometimes it is passed as value (tools with options), sometimes as itemId (toolbar buttons)
toolName = toolName || itemId || value;
toolGroupIds = toolGroupIds.length ? toolGroupIds : toolGroupService.getToolGroupIds();
@@ -371,6 +415,7 @@ function commandsModule({
onClose: uiModalService.hide,
cornerstoneViewportService,
},
containerDimensions: 'w-[70%] max-w-[900px]',
});
}
},
@@ -406,11 +451,9 @@ function commandsModule({
const { viewport } = enabledElement;
if (viewport instanceof StackViewport) {
const { flipHorizontal } = viewport.getCamera();
viewport.setCamera({ flipHorizontal: !flipHorizontal });
viewport.render();
}
const { flipHorizontal } = viewport.getCamera();
viewport.setCamera({ flipHorizontal: !flipHorizontal });
viewport.render();
},
flipViewportVertical: () => {
const enabledElement = _getActiveViewportEnabledElement();
@@ -421,11 +464,9 @@ function commandsModule({
const { viewport } = enabledElement;
if (viewport instanceof StackViewport) {
const { flipVertical } = viewport.getCamera();
viewport.setCamera({ flipVertical: !flipVertical });
viewport.render();
}
const { flipVertical } = viewport.getCamera();
viewport.setCamera({ flipVertical: !flipVertical });
viewport.render();
},
invertViewport: ({ element }) => {
let enabledElement;
@@ -639,6 +680,17 @@ function commandsModule({
storePresentation: ({ viewportId }) => {
cornerstoneViewportService.storePresentation({ viewportId });
},
updateVolumeData: ({ volume }) => {
// update vtkOpenGLTexture and imageData of computed volume
const { imageData, vtkOpenGLTexture } = volume;
const numSlices = imageData.getDimensions()[2];
const slicesToUpdate = [...Array(numSlices).keys()];
slicesToUpdate.forEach(i => {
vtkOpenGLTexture.setUpdatedFrame(i);
});
imageData.modified();
},
attachProtocolViewportDataListener: ({ protocol, stageIndex }) => {
const EVENT = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
const command = protocol.callbacks.onViewportDataInitialized;
@@ -773,7 +825,7 @@ function commandsModule({
}
crosshairInstances.forEach(ins => {
ins.resetCrosshairs();
ins?.resetCrosshairs();
});
},
};
@@ -928,6 +980,15 @@ function commandsModule({
toggleSynchronizer: {
commandFn: actions.toggleSynchronizer,
},
updateVolumeData: {
commandFn: actions.updateVolumeData,
},
toggleEnabledDisabledToolbar: {
commandFn: actions.toggleEnabledDisabledToolbar,
},
toggleActiveDisabledToolbar: {
commandFn: actions.toggleActiveDisabledToolbar,
},
};
return {
@@ -0,0 +1,31 @@
import React, { ReactElement } from 'react';
import PropTypes from 'prop-types';
import { ServicesManager } from '@ohif/core';
import { useViewportGrid } from '@ohif/ui';
import ViewportWindowLevel from '../ViewportWindowLevel/ViewportWindowLevel';
const ActiveViewportWindowLevel = ({
servicesManager,
}: {
servicesManager: ServicesManager;
}): ReactElement => {
const [viewportGrid] = useViewportGrid();
const { activeViewportId } = viewportGrid;
return (
<>
{activeViewportId && (
<ViewportWindowLevel
servicesManager={servicesManager}
viewportId={activeViewportId}
/>
)}
</>
);
};
ActiveViewportWindowLevel.propTypes = {
servicesManager: PropTypes.instanceOf(ServicesManager),
};
export default ActiveViewportWindowLevel;
@@ -0,0 +1 @@
export { default } from './ActiveViewportWindowLevel';
@@ -1,73 +1,116 @@
import React, { useCallback, useEffect, useRef, useState } from 'react';
import React, { useCallback, useEffect, useState, useRef } from 'react';
import { CinePlayer, useCine } from '@ohif/ui';
import { Enums, eventTarget } from '@cornerstonejs/core';
import { Enums, eventTarget, cache } from '@cornerstonejs/core';
import { Enums as StreamingEnums } from '@cornerstonejs/streaming-image-volume-loader';
import { useAppConfig } from '@state';
function WrappedCinePlayer({ enabledVPElement, viewportId, servicesManager }) {
const { customizationService, displaySetService, viewportGridService } = servicesManager.services;
const [{ isCineEnabled, cines }, api] = useCine();
const [{ isCineEnabled, cines }, cineService] = useCine();
const [newStackFrameRate, setNewStackFrameRate] = useState(24);
const [dynamicInfo, setDynamicInfo] = useState(null);
const [appConfig] = useAppConfig();
const isMountedRef = useRef(null);
const { component: CinePlayerComponent = CinePlayer } =
customizationService.get('cinePlayer') ?? {};
const cineHandler = () => {
if (!cines || !cines[viewportId] || !enabledVPElement) {
if (!cines?.[viewportId] || !enabledVPElement) {
return;
}
const cine = cines[viewportId];
const isPlaying = cine.isPlaying || false;
const frameRate = cine.frameRate || 24;
const { isPlaying = false, frameRate = 24 } = cines[viewportId];
const validFrameRate = Math.max(frameRate, 1);
if (isPlaying) {
api.playClip(enabledVPElement, {
framesPerSecond: validFrameRate,
});
} else {
api.stopClip(enabledVPElement);
}
return isPlaying
? cineService.playClip(enabledVPElement, { framesPerSecond: validFrameRate, viewportId })
: cineService.stopClip(enabledVPElement);
};
const newStackCineHandler = useCallback(() => {
const newDisplaySetHandler = useCallback(() => {
if (!enabledVPElement || !isCineEnabled) {
return;
}
const { viewports } = viewportGridService.getState();
const { displaySetInstanceUIDs } = viewports.get(viewportId);
let frameRate = 24;
let isPlaying = cines[viewportId].isPlaying;
let isPlaying = cines[viewportId]?.isPlaying || false;
displaySetInstanceUIDs.forEach(displaySetInstanceUID => {
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
if (displaySet.FrameRate) {
// displaySet.FrameRate corresponds to DICOM tag (0018,1063) which is defined as the the frame time in milliseconds
// So a bit of math to get the actual frame rate.
frameRate = Math.round(1000 / displaySet.FrameRate);
isPlaying ||= !!appConfig.autoPlayCine;
}
// check if the displaySet is dynamic and set the dynamic info
if (displaySet.isDynamicVolume) {
const { dynamicVolumeInfo } = displaySet;
const numTimePoints = dynamicVolumeInfo.timePoints.length;
const label = dynamicVolumeInfo.splittingTag;
const timePointIndex = dynamicVolumeInfo.timePointIndex || 0;
setDynamicInfo({
volumeId: displaySet.displaySetInstanceUID,
timePointIndex,
numTimePoints,
label,
});
} else {
setDynamicInfo(null);
}
});
if (isPlaying) {
api.setIsCineEnabled(isPlaying);
cineService.setIsCineEnabled(isPlaying);
}
api.setCine({ id: viewportId, isPlaying, frameRate });
cineService.setCine({ id: viewportId, isPlaying, frameRate });
setNewStackFrameRate(frameRate);
}, [displaySetService, viewportId, viewportGridService, cines]);
}, [displaySetService, viewportId, viewportGridService, cines, isCineEnabled, enabledVPElement]);
useEffect(() => {
isMountedRef.current = true;
eventTarget.addEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newStackCineHandler);
newDisplaySetHandler();
return () => {
isMountedRef.current = false;
api.stopClip(enabledVPElement);
api.setCine({ id: viewportId, isPlaying: false });
eventTarget.removeEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newStackCineHandler);
};
}, [enabledVPElement, newStackCineHandler]);
}, [isCineEnabled, newDisplaySetHandler]);
useEffect(() => {
if (!isCineEnabled) {
return;
}
cineHandler();
}, [isCineEnabled, cineHandler, enabledVPElement]);
/**
* Use effect for handling new display set
*/
useEffect(() => {
if (!enabledVPElement) {
return;
}
eventTarget.addEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newDisplaySetHandler);
// this doesn't makes sense that we are listening to this event on viewport element
enabledVPElement.addEventListener(
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
newDisplaySetHandler
);
return () => {
cineService.setCine({ id: viewportId, isPlaying: false });
eventTarget.removeEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newDisplaySetHandler);
enabledVPElement.removeEventListener(
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
newDisplaySetHandler
);
};
}, [enabledVPElement, newDisplaySetHandler, viewportId]);
useEffect(() => {
if (!cines || !cines[viewportId] || !enabledVPElement || !isMountedRef.current) {
@@ -77,41 +120,118 @@ function WrappedCinePlayer({ enabledVPElement, viewportId, servicesManager }) {
cineHandler();
return () => {
api.stopClip(enabledVPElement);
cineService.stopClip(enabledVPElement, { viewportId });
};
}, [cines, viewportId, enabledVPElement, cineHandler]);
}, [cines, viewportId, cineService, enabledVPElement, cineHandler]);
if (!isCineEnabled) {
return null;
}
const cine = cines[viewportId];
const isPlaying = (cine && cine.isPlaying) || false;
const isPlaying = cine?.isPlaying || false;
return (
isCineEnabled && (
<CinePlayerComponent
className="absolute left-1/2 bottom-3 -translate-x-1/2"
frameRate={newStackFrameRate}
isPlaying={isPlaying}
onClose={() => {
// also stop the clip
api.setCine({
id: viewportId,
isPlaying: false,
});
api.setIsCineEnabled(false);
}}
onPlayPauseChange={isPlaying => {
api.setCine({
id: viewportId,
isPlaying,
});
}}
onFrameRateChange={frameRate =>
api.setCine({
id: viewportId,
frameRate,
})
}
/>
)
<RenderCinePlayer
viewportId={viewportId}
cineService={cineService}
newStackFrameRate={newStackFrameRate}
isPlaying={isPlaying}
dynamicInfo={dynamicInfo}
customizationService={customizationService}
/>
);
}
function RenderCinePlayer({
viewportId,
cineService,
newStackFrameRate,
isPlaying,
dynamicInfo: dynamicInfoProp,
customizationService,
}) {
const { component: CinePlayerComponent = CinePlayer } =
customizationService.get('cinePlayer') ?? {};
const [dynamicInfo, setDynamicInfo] = useState(dynamicInfoProp);
useEffect(() => {
setDynamicInfo(dynamicInfoProp);
}, [dynamicInfoProp]);
/**
* Use effect for handling 4D time index changed
*/
useEffect(() => {
if (!dynamicInfo) {
return;
}
const handleTimePointIndexChange = evt => {
const { volumeId, timePointIndex, numTimePoints, splittingTag } = evt.detail;
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
};
eventTarget.addEventListener(
StreamingEnums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
handleTimePointIndexChange
);
return () => {
eventTarget.removeEventListener(
StreamingEnums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
handleTimePointIndexChange
);
};
}, [dynamicInfo]);
useEffect(() => {
if (!dynamicInfo) {
return;
}
const { volumeId, timePointIndex, numTimePoints, splittingTag } = dynamicInfo || {};
const volume = cache.getVolume(volumeId);
volume.timePointIndex = timePointIndex;
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
}, []);
const updateDynamicInfo = useCallback(props => {
const { volumeId, timePointIndex } = props;
const volume = cache.getVolume(volumeId);
volume.timePointIndex = timePointIndex;
}, []);
return (
<CinePlayerComponent
className="absolute left-1/2 bottom-3 -translate-x-1/2"
frameRate={newStackFrameRate}
isPlaying={isPlaying}
onClose={() => {
// also stop the clip
cineService.setCine({
id: viewportId,
isPlaying: false,
});
cineService.setIsCineEnabled(false);
}}
onPlayPauseChange={isPlaying => {
cineService.setCine({
id: viewportId,
isPlaying,
});
}}
onFrameRateChange={frameRate =>
cineService.setCine({
id: viewportId,
frameRate,
})
}
dynamicInfo={dynamicInfo}
updateDynamicInfo={updateDynamicInfo}
/>
);
}
@@ -0,0 +1,387 @@
import React, { useEffect, useCallback, useState, ReactElement } from 'react';
import PropTypes from 'prop-types';
import debounce from 'lodash.debounce';
import { ServicesManager } from '@ohif/core';
import { PanelSection, WindowLevel } from '@ohif/ui';
import vtkColorMaps from '@kitware/vtk.js/Rendering/Core/ColorTransferFunction/ColorMaps';
import { Enums, eventTarget, cache as cs3DCache, utilities as csUtils } from '@cornerstonejs/core';
import { getViewportVolumeHistogram } from './getViewportVolumeHistogram';
const { Events } = Enums;
const ViewportWindowLevel = ({
servicesManager,
viewportId,
}: {
servicesManager: ServicesManager;
viewportId: string;
}): ReactElement => {
const { cornerstoneViewportService } = servicesManager.services;
const [windowLevels, setWindowLevels] = useState([]);
const [cachedHistograms, setCachedHistograms] = useState({});
/**
* Looks for all viewports that has exactly all volumeIds passed as parameter.
*/
const getViewportsWithVolumeIds = useCallback(
(volumeIds: string[]) => {
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
const viewports = renderingEngine.getVolumeViewports();
return viewports.filter(vp => {
const viewportVolumeIds = vp.getActors().map(actor => actor.uid);
return (
volumeIds.length === viewportVolumeIds.length &&
volumeIds.every(volumeId => viewportVolumeIds.includes(volumeId))
);
});
},
[cornerstoneViewportService]
);
const getNodeOpacity = (volumeActor, nodeIndex) => {
const volumeOpacity = volumeActor.getProperty().getScalarOpacity(0);
const nodeValue = [];
volumeOpacity.getNodeValue(nodeIndex, nodeValue);
return nodeValue[1];
};
/**
* Checks if the opacity applied to the PET volume is something like
* [{x: 0, y: 0}, {x: 0.1, y: [C]}, {x: [ANY], y: [C]}] where C is a
* constant opacity value for all x's greater than 0.1
*/
const isPetVolumeWithDefaultOpacity = (volumeId, volumeActor) => {
const volume = cs3DCache.getVolume(volumeId);
if (!volume) {
return false;
}
const modality = volume.metadata.Modality;
if (modality !== 'PT') {
return false;
}
const volumeOpacity = volumeActor.getProperty().getScalarOpacity(0);
// It must have at least two points (0 and 0.1)
if (volumeOpacity.getSize() < 2) {
return false;
}
const node1Value = [];
const node2Value = [];
volumeOpacity.getNodeValue(0, node1Value);
volumeOpacity.getNodeValue(1, node2Value);
// First node must be (x:0, y:0} and the second one {x:0.1, y:any}
if (node1Value[0] !== 0 || node1Value[1] !== 0 || node2Value[0] !== 0.1) {
return false;
}
const expectedOpacity = node2Value[1];
const opacitySize = volumeOpacity.getSize();
const currentNodeValue = [];
// Any point after 0.1 must have the same opacity
for (let i = 2; i < opacitySize; i++) {
volumeOpacity.getNodeValue(i, currentNodeValue);
if (currentNodeValue[1] !== expectedOpacity) {
return false;
}
}
return true;
};
/**
* Checks if the opacity function has a constance opacity value for all x's
*/
const isVolumeWithConstantOpacity = volumeActor => {
const volumeOpacity = volumeActor.getProperty().getScalarOpacity(0);
const opacitySize = volumeOpacity.getSize();
const firstNodeValue = [];
volumeOpacity.getNodeValue(0, firstNodeValue);
const firstNodeOpacity = firstNodeValue[1];
for (let i = 0; i < opacitySize; i++) {
const currentNodeValue = [];
volumeOpacity.getNodeValue(0, currentNodeValue);
if (currentNodeValue[1] !== firstNodeOpacity) {
return false;
}
}
return true;
};
const getVolumeOpacity = useCallback((viewport, volumeId) => {
const volumeActor = viewport.getActor(volumeId).actor;
if (isPetVolumeWithDefaultOpacity(volumeId, volumeActor)) {
// Get the opacity from the second node at 0.1
return getNodeOpacity(volumeActor, 1);
} else if (isVolumeWithConstantOpacity(volumeActor)) {
return getNodeOpacity(volumeActor, 0);
}
return undefined;
}, []);
const getWindowLevelsData = useCallback(
async (viewportId: number) => {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
if (!viewport) {
return [];
}
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
const volumeIds = viewport.getActors().map(actor => actor.uid);
const viewportProperties = viewport.getProperties();
const { voiRange } = viewportProperties;
const viewportVoi = voiRange
? {
windowWidth: voiRange.upper - voiRange.lower,
windowCenter: voiRange.lower + (voiRange.upper - voiRange.lower) / 2,
}
: undefined;
const windowLevels = await Promise.all(
volumeIds.map(async (volumeId, volumeIndex) => {
const volume = cs3DCache.getVolume(volumeId);
if (!volume) {
return null;
}
const opacity = getVolumeOpacity(viewport, volumeId);
const { metadata, scaling } = volume;
const modality = metadata.Modality;
// TODO: find a proper way to fix the histogram
const options = {
min: modality === 'PT' ? 0.1 : -999,
max: modality === 'PT' ? 5 : 10000,
};
const histogram =
cachedHistograms[volumeId] ??
(await getViewportVolumeHistogram(viewport, volume, options));
const { voi: displaySetVOI, colormap: displaySetColormap } =
viewportInfo.displaySetOptions[volumeIndex];
let colormap;
if (displaySetColormap) {
colormap =
csUtils.colormap.getColormap(displaySetColormap.name) ??
vtkColorMaps.getPresetByName(displaySetColormap.name);
}
const voi = !volumeIndex ? viewportVoi ?? displaySetVOI : displaySetVOI;
return {
viewportId,
modality,
volumeId,
volumeIndex,
voi,
histogram,
colormap,
step: scaling?.PT ? 0.05 : 1,
opacity,
showOpacitySlider: volumeIndex === 1 && opacity !== undefined,
};
})
);
const data = windowLevels.filter(Boolean);
return data;
},
[cachedHistograms, cornerstoneViewportService, getVolumeOpacity]
);
const updateViewportHistograms = useCallback(() => {
getWindowLevelsData(viewportId).then(windowLevels => {
setWindowLevels(windowLevels);
});
}, [viewportId, getWindowLevelsData]);
const handleCornerstoneVOIModified = useCallback(
e => {
const { detail } = e;
const { volumeId, range } = detail;
const oldWindowLevel = windowLevels.find(wl => wl.volumeId === volumeId);
if (!oldWindowLevel) {
return;
}
const oldVOI = oldWindowLevel.voi;
const windowWidth = range.upper - range.lower;
const windowCenter = range.lower + windowWidth / 2;
if (windowWidth === oldVOI.windowWidth && windowCenter === oldVOI.windowCenter) {
return;
}
const newWindowLevel = {
...oldWindowLevel,
voi: {
windowWidth,
windowCenter,
},
};
setWindowLevels(
windowLevels.map(windowLevel =>
windowLevel === oldWindowLevel ? newWindowLevel : windowLevel
)
);
},
[windowLevels]
);
const debouncedHandleCornerstoneVOIModified = useCallback(
debounce(handleCornerstoneVOIModified, 100),
[handleCornerstoneVOIModified]
);
const handleVOIChange = useCallback(
(volumeId, voi) => {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
const newRange = {
lower: voi.windowCenter - voi.windowWidth / 2,
upper: voi.windowCenter + voi.windowWidth / 2,
};
viewport.setProperties({ voiRange: newRange }, volumeId);
viewport.render();
},
[cornerstoneViewportService, viewportId]
);
const handleOpacityChange = useCallback(
(viewportId, _volumeIndex, volumeId, opacity) => {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
if (!viewport) {
return;
}
const viewportVolumeIds = viewport.getActors().map(actor => actor.uid);
const viewports = getViewportsWithVolumeIds(viewportVolumeIds);
viewports.forEach(vp => {
vp.setProperties({ colormap: { opacity } }, volumeId);
vp.render();
});
},
[getViewportsWithVolumeIds, cornerstoneViewportService]
);
// Listen to windowLevels changes and caches all the new ones
useEffect(() => {
const newVolumeHistograms = windowLevels
.filter(windowLevel => !cachedHistograms[windowLevel.volumeId] && windowLevel.histogram)
.reduce((volumeHistograms, windowLevel) => {
// If the histogram exists, add it to the volumeHistograms object
if (windowLevel?.histogram) {
volumeHistograms[windowLevel.volumeId] = windowLevel.histogram;
}
return volumeHistograms;
}, {});
if (Object.keys(newVolumeHistograms).length) {
setCachedHistograms(prev => ({ ...prev, ...newVolumeHistograms }));
}
}, [windowLevels, cachedHistograms]);
// Updates the histogram when the viewport index prop has changed
useEffect(() => updateViewportHistograms(), [viewportId, updateViewportHistograms]);
// Listen to cornerstone events on "eventTarget" and at the document level
useEffect(() => {
eventTarget.addEventListener(Events.IMAGE_VOLUME_LOADING_COMPLETED, updateViewportHistograms);
document.addEventListener(Events.VOI_MODIFIED, debouncedHandleCornerstoneVOIModified, true);
return () => {
eventTarget.removeEventListener(
Events.IMAGE_VOLUME_LOADING_COMPLETED,
updateViewportHistograms
);
document.removeEventListener(
Events.VOI_MODIFIED,
debouncedHandleCornerstoneVOIModified,
true
);
};
}, [updateViewportHistograms, debouncedHandleCornerstoneVOIModified]);
// Updates the viewport when the context of the viewport has changed. This is
// necessary when moving across different stages because the viewport index
// may not change but the volumes loaded on it may change.
useEffect(() => {
const { unsubscribe } = cornerstoneViewportService.subscribe(
cornerstoneViewportService.EVENTS.VIEWPORT_VOLUMES_CHANGED,
({ viewportInfo }) => {
if (viewportInfo.viewportId === viewportId) {
updateViewportHistograms();
}
}
);
return () => {
unsubscribe();
};
}, [viewportId, cornerstoneViewportService, updateViewportHistograms]);
return (
<PanelSection title="Window Level">
{windowLevels.map((windowLevel, i) => {
if (!windowLevel.histogram) {
return null;
}
return (
<WindowLevel
key={windowLevel.volumeId}
title={`${windowLevel.modality}`}
histogram={windowLevel.histogram}
voi={windowLevel.voi}
step={windowLevel.step}
showOpacitySlider={windowLevel.showOpacitySlider}
colormap={windowLevel.colormap}
onVOIChange={voi => handleVOIChange(windowLevel.volumeId, voi)}
opacity={windowLevel.opacity}
onOpacityChange={opacity =>
handleOpacityChange(windowLevel.viewportId, i, windowLevel.volumeId, opacity)
}
/>
);
})}
</PanelSection>
);
};
ViewportWindowLevel.propTypes = {
servicesManager: PropTypes.instanceOf(ServicesManager),
viewportId: PropTypes.string.isRequired,
};
export default ViewportWindowLevel;
@@ -0,0 +1,72 @@
import { getWebWorkerManager } from '@cornerstonejs/core';
const workerManager = getWebWorkerManager();
const WorkerOptions = {
maxWorkerInstances: 1,
autoTerminateOnIdle: {
enabled: true,
idleTimeThreshold: 1000,
},
};
// Register the task
const workerFn = () => {
return new Worker(new URL('./histogramWorker.js', import.meta.url), {
name: 'histogram-worker', // name used by the browser to name the worker
});
};
const getViewportVolumeHistogram = async (viewport, volume, options?) => {
workerManager.registerWorker('histogram-worker', workerFn, WorkerOptions);
if (!volume?.loadStatus.loaded) {
return undefined;
}
const volumeImageData = viewport.getImageData(volume.volumeId);
if (!volumeImageData) {
return undefined;
}
let scalarData = volume.scalarData;
let prevTimePoint;
if (volume.numTimePoints > 1) {
prevTimePoint = volume.timePointIndex;
const middleTimePoint = Math.round(volume.numTimePoints / 2);
volume.timePointIndex = middleTimePoint;
scalarData = volume.getScalarData(middleTimePoint);
}
const { dimensions, origin, direction, spacing } = volume;
const range = await workerManager.executeTask('histogram-worker', 'getRange', {
dimensions,
origin,
direction,
spacing,
scalarData,
});
// after we calculate the range let's reset the timePointIndex
if (volume.numTimePoints > 1) {
volume.timePointIndex = prevTimePoint;
}
const { minimum: min, maximum: max } = range;
const calcHistOptions = {
numBins: 256,
min: Math.max(min, options?.min ?? min),
max: Math.min(max, options?.max ?? max),
};
const histogram = await workerManager.executeTask('histogram-worker', 'calcHistogram', {
data: scalarData,
options: calcHistOptions,
});
return histogram;
};
export { getViewportVolumeHistogram };
@@ -0,0 +1,97 @@
import { expose } from 'comlink';
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
/**
* This object simulates a heavy task by implementing a sleep function and a recursive Fibonacci function.
* It's used for testing or demonstrating purposes where a heavy or time-consuming task is needed.
*/
const obj = {
getRange: ({ dimensions, origin, direction, spacing, scalarData }) => {
const imageData = vtkImageData.newInstance();
imageData.setDimensions(dimensions);
imageData.setOrigin(origin);
imageData.setDirection(direction);
imageData.setSpacing(spacing);
const scalarArray = vtkDataArray.newInstance({
name: 'Pixels',
numberOfComponents: 1,
values: scalarData,
});
imageData.getPointData().setScalars(scalarArray);
imageData.modified();
const range = imageData.computeHistogram(imageData.getBounds());
return range;
},
calcHistogram: ({ data, options }) => {
if (options === undefined) {
options = {};
}
const histogram = {
numBins: options.numBins || 256,
range: { min: 0, max: 0 },
bins: new Int32Array(1),
maxBin: 0,
maxBinValue: 0,
};
let minToUse = options.min;
let maxToUse = options.max;
if (minToUse === undefined || maxToUse === undefined) {
let min = Infinity;
let max = -Infinity;
let index = data.length;
while (index--) {
const value = data[index];
if (value < min) {
min = value;
}
if (value > max) {
max = value;
}
}
minToUse = min;
maxToUse = max;
}
histogram.range = { min: minToUse, max: maxToUse };
const bins = new Int32Array(histogram.numBins);
const binScale = histogram.numBins / (maxToUse - minToUse);
for (let index = 0; index < data.length; index++) {
const value = data[index];
if (value < minToUse) {
continue;
}
if (value > maxToUse) {
continue;
}
const bin = Math.floor((value - minToUse) * binScale);
bins[bin] += 1;
}
histogram.bins = bins;
histogram.maxBin = 0;
histogram.maxBinValue = 0;
for (let bin = 0; bin < histogram.numBins; bin++) {
if (histogram.bins[bin] > histogram.maxBinValue) {
histogram.maxBin = bin;
histogram.maxBinValue = histogram.bins[bin];
}
}
return histogram;
},
};
expose(obj);
@@ -0,0 +1 @@
export { default } from './ViewportWindowLevel';
@@ -102,6 +102,7 @@ export function Colorbar({
return (
<div className="all-in-one-menu-item flex w-full justify-center">
<div className="mr-2 w-[28px]"></div>
<SwitchButton
label="Display Color bar"
checked={showColorbar}
@@ -68,6 +68,11 @@ export function Colormap({
key: index,
style: {
minWidth: `calc(100% / ${displaySets.length})`,
fontSize: '0.8rem',
textAlign: 'center',
display: 'flex',
justifyContent: 'center',
alignItems: 'center',
},
}));
}, [displaySets]);
@@ -60,7 +60,11 @@ export function VolumeLighting({
min={0}
type="range"
step={0.1}
style={{ background: calculateBackground(ambient) }}
style={{
background: calculateBackground(ambient),
'--thumb-inner-color': '#5acce6',
'--thumb-outer-color': '#090c29',
}}
/>
)}
</div>
@@ -84,7 +88,11 @@ export function VolumeLighting({
min={0}
type="range"
step={0.1}
style={{ background: calculateBackground(diffuse) }}
style={{
background: calculateBackground(diffuse),
'--thumb-inner-color': '#5acce6',
'--thumb-outer-color': '#090c29',
}}
/>
)}
</div>
@@ -109,7 +117,11 @@ export function VolumeLighting({
min={0}
type="range"
step={0.1}
style={{ background: calculateBackground(specular) }}
style={{
background: calculateBackground(specular),
'--thumb-inner-color': '#5acce6',
'--thumb-outer-color': '#090c29',
}}
/>
)}
</div>
@@ -25,10 +25,10 @@ export function VolumeRenderingOptions({
commandsManager={commandsManager}
serviceManager={serviceManager}
/>
<div className="all-in-one-menu-item flex w-full justify-start">
<div className="all-in-one-menu-item mt-2 flex !h-[20px] w-full justify-start">
<div className="text-aqua-pale text-[13px]">LIGHTING</div>
</div>
<AllInOneMenu.DividerItem />
<div className="bg-primary-dark mt-1 mb-1 h-[2px] w-full"></div>
<div className="all-in-one-menu-item flex w-full justify-center">
<VolumeShade
commandsManager={commandsManager}
@@ -23,7 +23,7 @@ export function VolumeRenderingPresets({
commandsManager,
},
containerDimensions: 'h-[543px] w-[460px]',
contentDimensions: 'h-[493px] w-[460px] pl-[12px]',
contentDimensions: 'h-[493px] w-[460px] pl-[12px] pr-[12px]',
});
};
@@ -60,7 +60,11 @@ export function VolumeRenderingQuality({
type="range"
step={step}
onChange={e => onChange(parseInt(e.target.value, 10))}
style={{ background: calculateBackground((quality - min) / (max - min)) }}
style={{
background: calculateBackground((quality - min) / (max - min)),
'--thumb-inner-color': '#5acce6',
'--thumb-outer-color': '#090c29',
}}
/>
)}
</div>
@@ -82,6 +82,8 @@ export function VolumeShift({
step={step}
style={{
background: calculateBackground((shift - minShift) / (maxShift - minShift)),
'--thumb-inner-color': '#5acce6',
'--thumb-outer-color': '#090c29',
}}
/>
)}
@@ -6,7 +6,7 @@ import { useTranslation } from 'react-i18next';
export type WindowLevelProps = {
viewportId: string;
presets: Record<string, Array<WindowLevelPreset>>;
presets: Array<Record<string, Array<WindowLevelPreset>>>;
commandsManager: CommandsManager;
};
@@ -23,25 +23,34 @@ export function WindowLevel({
commandName: 'setViewportWindowLevel',
commandOptions: {
...props,
viewportId,
},
context: 'CORNERSTONE',
});
},
[commandsManager]
[commandsManager, viewportId]
);
return (
<AllInOneMenu.ItemPanel>
<AllInOneMenu.HeaderItem>
{t('Modality Presets', { modality: Object.keys(presets)[0] })}
</AllInOneMenu.HeaderItem>
{Object.values(presets)[0].map((preset, index) => (
<AllInOneMenu.Item
key={index}
label={preset.description}
secondaryLabel={`${preset.window} / ${preset.level}`}
onClick={() => onSetWindowLevel({ ...preset, viewportId })}
></AllInOneMenu.Item>
{presets.map((modalityPresets, modalityIndex) => (
<React.Fragment key={modalityIndex}>
{Object.entries(modalityPresets).map(([modality, presetsArray]) => (
<React.Fragment key={modality}>
<AllInOneMenu.HeaderItem>
{t('Modality Presets', { modality })}
</AllInOneMenu.HeaderItem>
{presetsArray.map((preset, index) => (
<AllInOneMenu.Item
key={`${modality}-${index}`}
label={preset.description}
secondaryLabel={`${preset.window} / ${preset.level}`}
onClick={() => onSetWindowLevel(preset)}
/>
))}
</React.Fragment>
))}
</React.Fragment>
))}
</AllInOneMenu.ItemPanel>
);
@@ -19,7 +19,7 @@ import { utilities } from '@cornerstonejs/core';
export type WindowLevelActionMenuProps = {
viewportId: string;
element: HTMLElement;
presets: Record<string, Array<WindowLevelPreset>>;
presets: Array<Record<string, Array<WindowLevelPreset>>>;
verticalDirection: AllInOneMenu.VerticalDirection;
horizontalDirection: AllInOneMenu.HorizontalDirection;
commandsManager: CommandsManager;
@@ -52,6 +52,7 @@ export function WindowLevelActionMenu({
} = colorbarProperties;
const { colorbarService, cornerstoneViewportService } = serviceManager.services;
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
const backgroundColor = viewportInfo.getViewportOptions().background;
const isLight = backgroundColor ? utilities.isEqual(backgroundColor, [1, 1, 1]) : false;
@@ -93,13 +94,7 @@ export function WindowLevelActionMenu({
colorbarService.removeColorbar(viewportId);
onSetColorbar();
}, 0);
}, [viewportId]);
useEffect(() => {
if (colorbarService.hasColorbar(viewportId)) {
colorbarService.removeColorbar(viewportId);
}
}, [displaySets]);
}, [viewportId, displaySets, viewport]);
useEffect(() => {
setMenuKey(menuKey + 1);
@@ -128,10 +123,8 @@ export function WindowLevelActionMenu({
iconClassName={classNames(
// Visible on hover and for the active viewport
activeViewportId === viewportId ? 'visible' : 'invisible group-hover:visible',
'flex shrink-0 cursor-pointer rounded active:text-white',
isLight
? 'text-aqua-pale hover:bg-secondary-dark'
: 'text-primary-light hover:bg-secondary-light/60'
'flex shrink-0 cursor-pointer rounded active:text-white text-primary-light',
isLight ? ' hover:bg-secondary-dark' : 'hover:bg-secondary-light/60'
)}
menuStyle={{ maxHeight: vpHeight - 32, minWidth: 218 }}
onVisibilityChange={() => {
@@ -166,10 +159,10 @@ export function WindowLevelActionMenu({
</AllInOneMenu.SubMenu>
)}
{presets && !is3DVolume && (
{presets && presets.length > 0 && !is3DVolume && (
<AllInOneMenu.SubMenu
key="windowLevelPresets"
itemLabel={t('Modality Window Presets', { modality: Object.keys(presets)[0] })}
itemLabel={t('Modality Window Presets')}
itemIcon="viewport-window-level"
>
<WindowLevel
@@ -24,13 +24,11 @@ export function getWindowLevelActionMenu({
return { [displaySet.Modality]: presets[displaySet.Modality] };
});
const hasMenu = displaySetPresets.length > 0;
return hasMenu ? (
return (
<WindowLevelActionMenu
viewportId={viewportId}
element={element}
presets={displaySetPresets[0]}
presets={displaySetPresets}
verticalDirection={verticalDirection}
horizontalDirection={horizontalDirection}
commandsManager={commandsManager}
@@ -40,5 +38,5 @@ export function getWindowLevelActionMenu({
volumeRenderingPresets={volumeRenderingPresets}
volumeRenderingQualityRange={volumeRenderingQualityRange}
/>
) : null;
);
}
@@ -64,6 +64,136 @@ function getCustomizationModule() {
step: 1,
},
},
{
id: 'cornerstone.measurements',
Angle: {
displayText: [],
report: [],
},
CobbAngle: {
displayText: [],
report: [],
},
ArrowAnnotate: {
displayText: [],
report: [],
},
RectangleROi: {
displayText: [],
report: [],
},
CircleROI: {
displayText: [],
report: [],
},
EllipticalROI: {
displayText: [],
report: [],
},
Bidirectional: {
displayText: [],
report: [],
},
Length: {
displayText: [],
report: [],
},
LivewireContour: {
displayText: [],
report: [],
},
SplineROI: {
displayText: [
{
displayName: 'Area',
value: 'area',
type: 'value',
},
{
value: 'areaUnit',
for: ['area'],
type: 'unit',
},
/**
{
displayName: 'Modality',
value: 'Modality',
type: 'value',
},
*/
],
report: [
{
displayName: 'Area',
value: 'area',
type: 'value',
},
{
displayName: 'Unit',
value: 'areaUnit',
type: 'value',
},
],
},
PlanarFreehandROI: {
displayText: [
{
displayName: 'Mean',
value: 'mean',
type: 'value',
},
{
displayName: 'Max',
value: 'max',
type: 'value',
},
{
displayName: 'Area',
value: 'area',
type: 'value',
},
{
value: 'modalityUnit',
for: ['mean', 'max' /** 'stdDev **/],
type: 'unit',
},
{
value: 'areaUnit',
for: ['area'],
type: 'unit',
},
/**
{
displayName: 'Std Dev',
value: 'stdDev',
type: 'value',
},
*/
],
report: [
{
displayName: 'Mean',
value: 'mean',
type: 'value',
},
{
displayName: 'Max',
value: 'max',
type: 'value',
},
{
displayName: 'Area',
value: 'area',
type: 'value',
},
{
displayName: 'Unit',
value: 'unit',
type: 'value',
},
],
},
},
],
},
];
+61 -46
View File
@@ -9,6 +9,7 @@ const getToggledClassName = (isToggled: boolean) => {
export default function getToolbarModule({ commandsManager, servicesManager }) {
const {
toolGroupService,
toolbarService,
syncGroupService,
cornerstoneViewportService,
hangingProtocolService,
@@ -21,16 +22,16 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
// enabled or not
{
name: 'evaluate.cornerstoneTool',
evaluate: ({ viewportId, button, disabledText }) => {
evaluate: ({ viewportId, button, toolNames, disabledText }) => {
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
if (!toolGroup) {
return;
}
const toolName = getToolNameForButton(button);
const toolName = toolbarService.getToolNameForButton(button);
if (!toolGroup || !toolGroup.hasTool(toolName)) {
if (!toolGroup || (!toolGroup.hasTool(toolName) && !toolNames)) {
return {
disabled: true,
className: '!text-common-bright ohif-disabled',
@@ -38,13 +39,15 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
};
}
const isPrimaryActive = toolGroup.getActivePrimaryMouseButtonTool() === toolName;
const isPrimaryActive = toolNames
? toolNames.includes(toolGroup.getActivePrimaryMouseButtonTool())
: toolGroup.getActivePrimaryMouseButtonTool() === toolName;
return {
disabled: false,
className: isPrimaryActive
? '!text-black bg-primary-light'
: '!text-common-bright hover:!bg-primary-dark hover:!text-primary-light',
? '!text-black bg-primary-light rounded'
: '!text-common-bright hover:!bg-primary-dark hover:!text-primary-light rounded',
// Todo: isActive right now is used for nested buttons where the primary
// button needs to be fully rounded (vs partial rounded) when active
// otherwise it does not have any other use
@@ -71,7 +74,7 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
// check if the active toolName is part of the items then we need
// to move it to the primary button
const activeToolIndex = items.findIndex(item => {
const toolName = getToolNameForButton(item);
const toolName = toolbarService.getToolNameForButton(item);
return toolName === activeToolName;
});
@@ -108,32 +111,29 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
};
},
},
{
name: 'evaluate.cornerstoneTool.toggle.ifStrictlyDisabled',
evaluate: ({ viewportId, button, disabledText }) =>
_evaluateToggle({
viewportId,
button,
toolbarService,
disabledText,
offModes: [Enums.ToolModes.Disabled],
toolGroupService,
}),
},
{
name: 'evaluate.cornerstoneTool.toggle',
evaluate: ({ viewportId, button, disabledText }) => {
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
if (!toolGroup) {
return;
}
const toolName = getToolNameForButton(button);
if (!toolGroup || !toolGroup.hasTool(toolName)) {
return {
disabled: true,
className: '!text-common-bright ohif-disabled',
disabledText: disabledText ?? 'Not available on the current viewport',
};
}
const isOff = [Enums.ToolModes.Disabled, Enums.ToolModes.Passive].includes(
toolGroup.getToolOptions(toolName).mode
);
return {
className: getToggledClassName(!isOff),
};
},
evaluate: ({ viewportId, button, disabledText }) =>
_evaluateToggle({
viewportId,
button,
toolbarService,
disabledText,
offModes: [Enums.ToolModes.Disabled, Enums.ToolModes.Passive],
toolGroupService,
}),
},
{
name: 'evaluate.cornerstone.synchronizer',
@@ -146,7 +146,11 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
};
}
const synchronizerType = button?.commands?.[0]?.commandOptions?.type;
const isArray = Array.isArray(button.commands);
const synchronizerType = isArray
? button.commands?.[0].commandOptions.type
: button.commands?.commandOptions.type;
synchronizers = syncGroupService.getSynchronizersOfType(synchronizerType);
@@ -192,7 +196,7 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
}
const displaySets = displaySetUIDs.map(displaySetService.getDisplaySetByUID);
const isUS = displaySets.some(displaySet => displaySet.Modality === 'US');
const isUS = displaySets.some(displaySet => displaySet?.Modality === 'US');
if (!isUS) {
return {
disabled: true,
@@ -268,21 +272,32 @@ export default function getToolbarModule({ commandsManager, servicesManager }) {
];
}
function getToolNameForButton(button) {
const { props } = button;
function _evaluateToggle({
viewportId,
toolbarService,
button,
disabledText,
offModes,
toolGroupService,
}) {
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
const commands = props?.commands || button.commands;
const commandsArray = Array.isArray(commands) ? commands : [commands];
const firstCommand = commandsArray[0];
if (typeof firstCommand === 'string') {
// likely not a cornerstone tool
return null;
if (!toolGroup) {
return;
}
const toolName = toolbarService.getToolNameForButton(button);
if (!toolGroup.hasTool(toolName)) {
return {
disabled: true,
className: '!text-common-bright ohif-disabled',
disabledText: disabledText ?? 'Not available on the current viewport',
};
}
if ('commandOptions' in firstCommand) {
return firstCommand.commandOptions.toolName ?? props?.id ?? button.id;
}
const isOff = offModes.includes(toolGroup.getToolOptions(toolName).mode);
// use id as a fallback for toolName
return props?.id ?? button.id;
return {
className: getToggledClassName(!isOff),
};
}
+5 -2
View File
@@ -77,8 +77,11 @@ export const fourUp = {
{
id: 'mprDisplaySet',
options: {
// ToDo: choose appropriate preset
displayPreset: 'CT-Bone',
displayPreset: {
CT: 'CT-Bone',
MR: 'MR-Default',
default: 'CT-Bone',
},
},
},
],
+5 -2
View File
@@ -77,8 +77,11 @@ export const main3D = {
{
id: 'mprDisplaySet',
options: {
// ToDo: choose appropriate preset
displayPreset: 'CT-Bone',
displayPreset: {
CT: 'CT-Bone',
MR: 'MR-Default',
default: 'CT-Bone',
},
},
},
],
+1 -11
View File
@@ -14,17 +14,7 @@ export const mpr: Types.HangingProtocol.Protocol = {
numberOfPriorsReferenced: 0,
protocolMatchingRules: [],
imageLoadStrategy: 'nth',
callbacks: {
// Switches out of MPR mode when the layout change button is used
onLayoutChange: [
{
commandName: 'toggleHangingProtocol',
commandOptions: { protocolId: 'mpr' },
context: 'DEFAULT',
},
],
// Turns off crosshairs when switching out of MPR mode
},
callbacks: {},
displaySetSelectors: {
activeDisplaySet: {
seriesMatchingRules: [
@@ -84,7 +84,11 @@ export const mprAnd3DVolumeViewport = {
{
id: 'mprDisplaySet',
options: {
displayPreset: 'CT-Bone',
displayPreset: {
CT: 'CT-Bone',
MR: 'MR-Default',
default: 'CT-Bone',
},
},
},
],
+5 -2
View File
@@ -51,8 +51,11 @@ export const only3D = {
{
id: 'mprDisplaySet',
options: {
// ToDo: choose appropriate preset
displayPreset: 'CT-Bone',
displayPreset: {
CT: 'CT-Bone',
MR: 'MR-Default',
default: 'CT-Bone',
},
},
},
],
+5 -2
View File
@@ -77,8 +77,11 @@ export const primary3D = {
{
id: 'mprDisplaySet',
options: {
// ToDo: choose appropriate preset
displayPreset: 'CT-Bone',
displayPreset: {
CT: 'CT-Bone',
MR: 'MR-Default',
default: 'CT-Bone',
},
},
},
],
+44 -2
View File
@@ -6,6 +6,7 @@ import {
imageLoadPoolManager,
imageRetrievalPoolManager,
} from '@cornerstonejs/core';
import * as csStreamingImageVolumeLoader from '@cornerstonejs/streaming-image-volume-loader';
import { Enums as cs3DToolsEnums } from '@cornerstonejs/tools';
import { ServicesManager, Types } from '@ohif/core';
@@ -34,6 +35,10 @@ import ImageOverlayViewerTool from './tools/ImageOverlayViewerTool';
import { showLabelAnnotationPopup } from './utils/callInputDialog';
import ViewportActionCornersService from './services/ViewportActionCornersService/ViewportActionCornersService';
import { ViewportActionCornersProvider } from './contextProviders/ViewportActionCornersProvider';
import ActiveViewportWindowLevel from './components/ActiveViewportWindowLevel';
const { helpers: volumeLoaderHelpers } = csStreamingImageVolumeLoader;
const { getDynamicVolumeInfo } = volumeLoaderHelpers ?? {};
const Component = React.lazy(() => {
return import(/* webpackPrefetch: true */ './Viewport/OHIFCornerstoneViewport');
@@ -56,7 +61,26 @@ const cornerstoneExtension: Types.Extensions.Extension = {
*/
id,
onModeExit: (): void => {
onModeEnter: ({ servicesManager }): void => {
const { cornerstoneViewportService, toolbarService, segmentationService } =
servicesManager.services;
toolbarService.registerEventForToolbarUpdate(cornerstoneViewportService, [
cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED,
]);
toolbarService.registerEventForToolbarUpdate(segmentationService, [
segmentationService.EVENTS.SEGMENTATION_ADDED,
segmentationService.EVENTS.SEGMENTATION_REMOVED,
segmentationService.EVENTS.SEGMENTATION_UPDATED,
]);
toolbarService.registerEventForToolbarUpdate(cornerstone.eventTarget, [
cornerstoneTools.Enums.Events.TOOL_ACTIVATED,
]);
},
onModeExit: ({ servicesManager }): void => {
const { cineService } = servicesManager.services;
// Empty out the image load and retrieval pools to prevent memory leaks
// on the mode exits
Object.values(cs3DEnums.RequestType).forEach(type => {
@@ -64,6 +88,8 @@ const cornerstoneExtension: Types.Extensions.Extension = {
imageRetrievalPoolManager.clearRequestStack(type);
});
cineService.setIsCineEnabled(false);
enabledElementReset();
},
@@ -90,6 +116,16 @@ const cornerstoneExtension: Types.Extensions.Extension = {
},
getToolbarModule,
getPanelModule({ servicesManager }) {
return [
{
name: 'activeViewportWindowLevel',
component: () => {
return <ActiveViewportWindowLevel servicesManager={servicesManager} />;
},
},
];
},
getHangingProtocolModule,
getViewportModule({ servicesManager, commandsManager }) {
const ExtendedOHIFCornerstoneViewport = props => {
@@ -127,7 +163,7 @@ const cornerstoneExtension: Types.Extensions.Extension = {
},
getEnabledElement,
dicomLoaderService,
showLabelAnnotationPopup
showLabelAnnotationPopup,
},
},
{
@@ -143,6 +179,12 @@ const cornerstoneExtension: Types.Extensions.Extension = {
Enums: cs3DToolsEnums,
},
},
{
name: 'volumeLoader',
exports: {
getDynamicVolumeInfo,
},
},
];
},
};
+27 -23
View File
@@ -15,7 +15,10 @@ import {
utilities as csUtilities,
Enums as csEnums,
} from '@cornerstonejs/core';
import { cornerstoneStreamingImageVolumeLoader } from '@cornerstonejs/streaming-image-volume-loader';
import {
cornerstoneStreamingImageVolumeLoader,
cornerstoneStreamingDynamicImageVolumeLoader,
} from '@cornerstonejs/streaming-image-volume-loader';
import initWADOImageLoader from './initWADOImageLoader';
import initCornerstoneTools from './initCornerstoneTools';
@@ -29,10 +32,11 @@ import initContextMenu from './initContextMenu';
import initDoubleClick from './initDoubleClick';
import { CornerstoneServices } from './types';
import initViewTiming from './utils/initViewTiming';
import { utilities } from '@cornerstonejs/core';
import { colormaps } from './utils/colormaps';
const { registerColormap } = utilities.colormap;
import { debounce } from 'lodash';
const { registerColormap } = csUtilities.colormap;
// TODO: Cypress tests are currently grabbing this from the window?
window.cornerstone = cornerstone;
@@ -93,29 +97,12 @@ export default async function init({
customizationService,
uiModalService,
uiNotificationService,
cineService,
cornerstoneViewportService,
hangingProtocolService,
toolbarService,
viewportGridService,
stateSyncService,
segmentationService,
} = servicesManager.services as CornerstoneServices;
toolbarService.registerEventForToolbarUpdate(cornerstoneViewportService, [
cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED,
]);
toolbarService.registerEventForToolbarUpdate(segmentationService, [
segmentationService.EVENTS.SEGMENTATION_ADDED,
segmentationService.EVENTS.SEGMENTATION_REMOVED,
segmentationService.EVENTS.SEGMENTATION_UPDATED,
]);
toolbarService.registerEventForToolbarUpdate(eventTarget, [
cornerstoneTools.Enums.Events.TOOL_ACTIVATED,
]);
window.services = servicesManager.services;
window.extensionManager = extensionManager;
window.commandsManager = commandsManager;
@@ -159,7 +146,7 @@ export default async function init({
const labelmapRepresentation = cornerstoneTools.Enums.SegmentationRepresentations.Labelmap;
cornerstoneTools.segmentation.config.setGlobalRepresentationConfig(labelmapRepresentation, {
fillAlpha: 0.3,
fillAlpha: 0.5,
fillAlphaInactive: 0.2,
outlineOpacity: 1,
outlineOpacityInactive: 0.65,
@@ -172,6 +159,11 @@ export default async function init({
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
'cornerstoneStreamingDynamicImageVolume',
cornerstoneStreamingDynamicImageVolumeLoader
);
hangingProtocolService.registerImageLoadStrategy('interleaveCenter', interleaveCenterLoader);
hangingProtocolService.registerImageLoadStrategy('interleaveTopToBottom', interleaveTopToBottom);
hangingProtocolService.registerImageLoadStrategy('nth', nthLoader);
@@ -195,7 +187,7 @@ export default async function init({
/* Measurement Service */
this.measurementServiceSource = connectToolsToMeasurementService(servicesManager);
initCineService(cineService);
initCineService(servicesManager);
// When a custom image load is performed, update the relevant viewports
hangingProtocolService.subscribe(
@@ -285,8 +277,20 @@ export default async function init({
eventTarget.addEventListener(EVENTS.ELEMENT_ENABLED, elementEnabledHandler.bind(null));
eventTarget.addEventListener(EVENTS.ELEMENT_DISABLED, elementDisabledHandler.bind(null));
colormaps.forEach(registerColormap);
// Event listener
eventTarget.addEventListenerDebounced(
EVENTS.ERROR_EVENT,
({ detail }) => {
uiNotificationService.show({
title: detail.type,
message: detail.message,
type: 'error',
});
},
1000
);
}
function CPUModal() {
+62 -4
View File
@@ -1,15 +1,73 @@
import { cache } from '@cornerstonejs/core';
import { utilities } from '@cornerstonejs/tools';
function initCineService(cineService) {
function _getVolumesFromViewport(viewport) {
return viewport ? viewport.getActors().map(actor => cache.getVolume(actor.uid)) : [];
}
function _getVolumeFromViewport(viewport) {
const volumes = _getVolumesFromViewport(viewport);
const dynamicVolume = volumes.find(volume => volume.isDynamicVolume());
return dynamicVolume ?? volumes[0];
}
/**
* Return all viewports that needs to be synchronized with the source
* viewport passed as parameter when cine is updated.
* @param servicesManager ServiceManager
* @param srcViewportIndex Source viewport index
* @returns array with viewport information.
*/
function _getSyncedViewports(servicesManager, srcViewportId) {
const { viewportGridService, cornerstoneViewportService } = servicesManager.services;
const { viewports: viewportsStates } = viewportGridService.getState();
const srcViewportState = viewportsStates.get(srcViewportId);
if (srcViewportState?.viewportOptions?.viewportType !== 'volume') {
return [];
}
const srcViewport = cornerstoneViewportService.getCornerstoneViewport(srcViewportId);
const srcVolume = srcViewport ? _getVolumeFromViewport(srcViewport) : null;
if (!srcVolume?.isDynamicVolume()) {
return [];
}
const { volumeId: srcVolumeId } = srcVolume;
return Array.from(viewportsStates.values())
.filter(({ viewportId }) => {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
return viewportId !== srcViewportId && viewport?.hasVolumeId(srcVolumeId);
})
.map(({ viewportId }) => ({ viewportId }));
}
function initCineService(servicesManager) {
const { cineService } = servicesManager.services;
const getSyncedViewports = viewportId => {
return _getSyncedViewports(servicesManager, viewportId);
};
const playClip = (element, playClipOptions) => {
return utilities.cine.playClip(element, playClipOptions);
};
const stopClip = element => {
return utilities.cine.stopClip(element);
const stopClip = (element, stopClipOptions) => {
return utilities.cine.stopClip(element, stopClipOptions);
};
cineService.setServiceImplementation({ playClip, stopClip });
cineService.setServiceImplementation({
getSyncedViewports,
playClip,
stopClip,
});
}
export default initCineService;
@@ -8,6 +8,7 @@ import {
MIPJumpToClickTool,
LengthTool,
RectangleROITool,
RectangleROIThresholdTool,
EllipticalROITool,
CircleROITool,
BidirectionalTool,
@@ -19,19 +20,22 @@ import {
MagnifyTool,
CrosshairsTool,
SegmentationDisplayTool,
RectangleScissorsTool,
SphereScissorsTool,
CircleScissorsTool,
BrushTool,
PaintFillTool,
init,
addTool,
annotation,
ReferenceLinesTool,
TrackballRotateTool,
CircleScissorsTool,
RectangleScissorsTool,
SphereScissorsTool,
AdvancedMagnifyTool,
UltrasoundDirectionalTool,
PlanarFreehandROITool,
SplineROITool,
LivewireContourTool,
OrientationMarkerTool,
} from '@cornerstonejs/tools';
import CalibrationLineTool from './tools/CalibrationLineTool';
@@ -40,6 +44,7 @@ import ImageOverlayViewerTool from './tools/ImageOverlayViewerTool';
export default function initCornerstoneTools(configuration = {}) {
CrosshairsTool.isAnnotation = false;
ReferenceLinesTool.isAnnotation = false;
AdvancedMagnifyTool.isAnnotation = false;
init(configuration);
addTool(PanTool);
@@ -52,6 +57,7 @@ export default function initCornerstoneTools(configuration = {}) {
addTool(MIPJumpToClickTool);
addTool(LengthTool);
addTool(RectangleROITool);
addTool(RectangleROIThresholdTool);
addTool(EllipticalROITool);
addTool(CircleROITool);
addTool(BidirectionalTool);
@@ -62,18 +68,21 @@ export default function initCornerstoneTools(configuration = {}) {
addTool(MagnifyTool);
addTool(CrosshairsTool);
addTool(SegmentationDisplayTool);
addTool(RectangleScissorsTool);
addTool(SphereScissorsTool);
addTool(CircleScissorsTool);
addTool(BrushTool);
addTool(PaintFillTool);
addTool(ReferenceLinesTool);
addTool(CalibrationLineTool);
addTool(TrackballRotateTool);
addTool(CircleScissorsTool);
addTool(RectangleScissorsTool);
addTool(SphereScissorsTool);
addTool(ImageOverlayViewerTool);
addTool(AdvancedMagnifyTool);
addTool(UltrasoundDirectionalTool);
addTool(PlanarFreehandROITool);
addTool(SplineROITool);
addTool(LivewireContourTool);
addTool(OrientationMarkerTool);
// Modify annotation tools to use dashed lines on SR
const annotationStyle = {
@@ -103,6 +112,7 @@ const toolNames = {
DragProbe: DragProbeTool.toolName,
Probe: ProbeTool.toolName,
RectangleROI: RectangleROITool.toolName,
RectangleROIThreshold: RectangleROIThresholdTool.toolName,
EllipticalROI: EllipticalROITool.toolName,
CircleROI: CircleROITool.toolName,
Bidirectional: BidirectionalTool.toolName,
@@ -111,6 +121,8 @@ const toolNames = {
Magnify: MagnifyTool.toolName,
Crosshairs: CrosshairsTool.toolName,
SegmentationDisplay: SegmentationDisplayTool.toolName,
Brush: BrushTool.toolName,
PaintFill: PaintFillTool.toolName,
ReferenceLines: ReferenceLinesTool.toolName,
CalibrationLine: CalibrationLineTool.toolName,
TrackballRotateTool: TrackballRotateTool.toolName,
@@ -123,6 +135,7 @@ const toolNames = {
SplineROI: SplineROITool.toolName,
LivewireContour: LivewireContourTool.toolName,
PlanarFreehandROI: PlanarFreehandROITool.toolName,
OrientationMarker: OrientationMarkerTool.toolName,
};
export { toolNames };
@@ -17,7 +17,8 @@ const CORNERSTONE_3D_TOOLS_SOURCE_VERSION = '0.1';
const initMeasurementService = (
measurementService,
displaySetService,
cornerstoneViewportService
cornerstoneViewportService,
customizationService
) => {
/* Initialization */
const {
@@ -30,10 +31,15 @@ const initMeasurementService = (
CobbAngle,
RectangleROI,
PlanarFreehandROI,
SplineROI,
LivewireContour,
Probe,
UltrasoundDirectional,
} = measurementServiceMappingsFactory(
measurementService,
displaySetService,
cornerstoneViewportService
cornerstoneViewportService,
customizationService
);
const csTools3DVer1MeasurementSource = measurementService.createSource(
CORNERSTONE_3D_TOOLS_SOURCE_NAME,
@@ -49,6 +55,20 @@ const initMeasurementService = (
Length.toMeasurement
);
measurementService.addMapping(
csTools3DVer1MeasurementSource,
'Crosshairs',
Length.matchingCriteria,
() => {
console.warn('Crosshairs mapping not implemented.');
return {};
},
() => {
console.warn('Crosshairs mapping not implemented.');
return {};
}
);
measurementService.addMapping(
csTools3DVer1MeasurementSource,
'Bidirectional',
@@ -113,6 +133,14 @@ const initMeasurementService = (
PlanarFreehandROI.toMeasurement
);
measurementService.addMapping(
csTools3DVer1MeasurementSource,
'SplineROI',
SplineROI.matchingCriteria,
SplineROI.toAnnotation,
SplineROI.toMeasurement
);
// On the UI side, the Calibration Line tool will work almost the same as the
// Length tool
measurementService.addMapping(
@@ -123,16 +151,45 @@ const initMeasurementService = (
Length.toMeasurement
);
measurementService.addMapping(
csTools3DVer1MeasurementSource,
'LivewireContour',
LivewireContour.matchingCriteria,
LivewireContour.toAnnotation,
LivewireContour.toMeasurement
);
measurementService.addMapping(
csTools3DVer1MeasurementSource,
'Probe',
Probe.matchingCriteria,
Probe.toAnnotation,
Probe.toMeasurement
);
measurementService.addMapping(
csTools3DVer1MeasurementSource,
'UltrasoundDirectionalTool',
UltrasoundDirectional.matchingCriteria,
UltrasoundDirectional.toAnnotation,
UltrasoundDirectional.toMeasurement
);
return csTools3DVer1MeasurementSource;
};
const connectToolsToMeasurementService = servicesManager => {
const { measurementService, displaySetService, cornerstoneViewportService } =
servicesManager.services;
const {
measurementService,
displaySetService,
cornerstoneViewportService,
customizationService,
} = servicesManager.services;
const csTools3DVer1MeasurementSource = initMeasurementService(
measurementService,
displaySetService,
cornerstoneViewportService
cornerstoneViewportService,
customizationService
);
connectMeasurementServiceToTools(
measurementService,
@@ -357,6 +414,10 @@ const connectMeasurementServiceToTools = (
imageId = dataSource.getImageIdsForInstance({ instance });
}
/**
* This annotation is used by the cornerstone viewport.
* This is not the read-only annotation rendered by the SR viewport.
*/
const annotationManager = annotation.state.getAnnotationManager();
annotationManager.addAnnotation({
annotationUID: measurement.uid,
@@ -369,11 +430,16 @@ const connectMeasurementServiceToTools = (
referencedImageId: imageId,
},
data: {
/**
* Don't remove this destructuring of data here.
* This is used to pass annotation specific data forward e.g. contour
*/
...(data.annotation.data || {}),
text: data.annotation.data.text,
handles: { ...data.annotation.data.handles },
cachedStats: { ...data.annotation.data.cachedStats },
label: data.annotation.data.label,
frameNumber: frameNumber,
frameNumber,
},
});
}
@@ -1,6 +1,9 @@
import * as cornerstone from '@cornerstonejs/core';
import { volumeLoader } from '@cornerstonejs/core';
import { cornerstoneStreamingImageVolumeLoader } from '@cornerstonejs/streaming-image-volume-loader';
import {
cornerstoneStreamingImageVolumeLoader,
cornerstoneStreamingDynamicImageVolumeLoader,
} from '@cornerstonejs/streaming-image-volume-loader';
import dicomImageLoader, { webWorkerManager } from '@cornerstonejs/dicom-image-loader';
import dicomParser from 'dicom-parser';
import { errorHandler, utils } from '@ohif/core';
@@ -41,6 +44,11 @@ export default function initWADOImageLoader(
registerVolumeLoader('cornerstoneStreamingImageVolume', cornerstoneStreamingImageVolumeLoader);
registerVolumeLoader(
'cornerstoneStreamingDynamicImageVolume',
cornerstoneStreamingDynamicImageVolumeLoader
);
dicomImageLoader.configure({
decodeConfig: {
// !! IMPORTANT !!
@@ -75,10 +75,7 @@ export default class ColorbarService extends PubSubService {
displaySetInstanceUIDs.forEach((displaySetInstanceUID, index) => {
const actorEntry = actorEntries.find(entry => entry.uid.includes(displaySetInstanceUID));
if (!actorEntry) {
return;
}
const { uid: volumeId } = actorEntry;
const volumeId = actorEntry?.uid;
const properties = viewport?.getProperties(volumeId);
const colormap = properties?.colormap;
// if there's an initial colormap set, and no colormap on the viewport, set it
@@ -194,8 +191,10 @@ export default class ColorbarService extends PubSubService {
private setViewportColormap(viewportId, displaySetInstanceUID, colormap, immediate = false) {
const renderingEngine = getRenderingEngine(RENDERING_ENGINE_ID);
const viewport = renderingEngine.getViewport(viewportId);
const actorEntries = viewport.getActors();
const actorEntries = viewport?.getActors();
if (!viewport || !actorEntries || actorEntries.length === 0) {
return;
}
const setViewportProperties = (viewport, uid) => {
const actorEntry = actorEntries.find(entry => entry.uid.includes(uid));
const { actor: volumeActor, uid: volumeId } = actorEntry;
@@ -45,7 +45,11 @@ class CornerstoneCacheService {
// as a reference volume, if so, we should hang a volume viewport
// instead of a stack viewport
if (this._shouldRenderSegmentation(displaySets)) {
viewportType = 'volume';
// if the viewport type is volume 3D, we should let it be as it is
// Todo: in future here we should kick start the conversion of the
// segmentation to closed surface
viewportType =
viewportType === Enums.ViewportType.VOLUME_3D ? Enums.ViewportType.VOLUME_3D : 'volume';
// update viewportOptions to reflect the new viewport type
viewportOptions.viewportType = viewportType;
@@ -94,7 +98,21 @@ class CornerstoneCacheService {
const volume = cs3DCache.getVolume(volumeId);
if (volume) {
cs3DCache.removeVolumeLoadObject(volumeId);
if (volume.imageIds) {
// also for each imageId in the volume, remove the imageId from the cache
// since that will hold the old metadata as well
volume.imageIds.forEach(imageId => {
if (cs3DCache.getImageLoadObject(imageId)) {
cs3DCache.removeImageLoadObject(imageId);
}
});
}
// this shouldn't be via removeVolumeLoadObject, since that will
// remove the texture as well, but here we really just need a remove
// from registry so that we load it again
cs3DCache._volumeCache.delete(volumeId);
this.volumeImageIds.delete(volumeId);
}
@@ -200,6 +218,7 @@ class CornerstoneCacheService {
volume,
volumeId,
imageIds: volumeImageIds,
isDynamicVolume: displaySet.isDynamicVolume,
});
}
@@ -228,7 +247,7 @@ class CornerstoneCacheService {
const shouldDisplaySeg = segmentationService.shouldRenderSegmentation(
viewportDisplaySetInstanceUIDs,
instance.FrameOfReferenceUID
instance?.FrameOfReferenceUID || segDisplaySet.FrameOfReferenceUID
);
if (shouldDisplaySeg) {
@@ -1147,6 +1147,10 @@ class SegmentationService extends PubSubService {
displaySet.isHydrated = isHydrated;
displaySetService.setDisplaySetMetadataInvalidated(displaySetUID, false);
this._broadcastEvent(this.EVENTS.SEGMENTATION_UPDATED, {
segmentation: this.getSegmentation(displaySetUID),
});
}
private _highlightLabelmap(
@@ -1289,7 +1293,7 @@ class SegmentationService extends PubSubService {
}
const { colorLUTIndex } = segmentation;
this._removeSegmentationFromCornerstone(segmentationId);
const { updatedToolGroupIds } = this._removeSegmentationFromCornerstone(segmentationId);
// Delete associated colormap
// Todo: bring this back
@@ -1309,7 +1313,9 @@ class SegmentationService extends PubSubService {
if (remainingHydratedSegmentations.length) {
const { id } = remainingHydratedSegmentations[0];
this._setActiveSegmentationForToolGroup(id, this._getApplicableToolGroupId(), false);
updatedToolGroupIds.forEach(toolGroupId => {
this._setActiveSegmentationForToolGroup(id, toolGroupId, false);
});
}
}
@@ -1966,6 +1972,7 @@ class SegmentationService extends PubSubService {
const removeFromCache = true;
const segmentationState = cstSegmentation.state;
const sourceSegState = segmentationState.getSegmentation(segmentationId);
const updatedToolGroupIds: Set<string> = new Set();
if (!sourceSegState) {
return;
@@ -1981,6 +1988,7 @@ class SegmentationService extends PubSubService {
segmentationRepresentations.forEach(representation => {
if (representation.segmentationId === segmentationId) {
UIDsToRemove.push(representation.segmentationRepresentationUID);
updatedToolGroupIds.add(toolGroupId);
}
});
@@ -1998,6 +2006,8 @@ class SegmentationService extends PubSubService {
if (removeFromCache && cache.getVolumeLoadObject(segmentationId)) {
cache.removeVolumeLoadObject(segmentationId);
}
return { updatedToolGroupIds: Array.from(updatedToolGroupIds) };
}
private _updateCornerstoneSegmentations({ segmentationId, notYetUpdatedAtSource }) {
@@ -1,5 +1,5 @@
import { synchronizers, SynchronizerManager, Synchronizer } from '@cornerstonejs/tools';
import { getRenderingEngines } from '@cornerstonejs/core';
import { getRenderingEngines, utilities } from '@cornerstonejs/core';
import { pubSubServiceInterface, Types, ServicesManager } from '@ohif/core';
@@ -184,6 +184,11 @@ export default class SyncGroupService {
return;
}
// Only image slice synchronizer register spatial registration
if (this.isImageSliceSyncronizer(synchronizer)) {
this.unRegisterSpatialRegistration(synchronizer);
}
synchronizer.remove({
viewportId,
renderingEngineId,
@@ -198,4 +203,45 @@ export default class SyncGroupService {
}
});
}
/**
* Clean up the spatial registration metadata created by synchronizer
* This is needed to be able to re-sync images slices if needed
* @param synchronizer
*/
unRegisterSpatialRegistration(synchronizer: Synchronizer) {
const sourceViewports = synchronizer.getSourceViewports().map(vp => vp.viewportId);
const targetViewports = synchronizer.getTargetViewports().map(vp => vp.viewportId);
// Create an array of pair of viewports to remove from spatialRegistrationMetadataProvider
// All sourceViewports combined with all targetViewports
const toUnregister = sourceViewports
.map((sourceViewportId: string) => {
return targetViewports.map(targetViewportId => [targetViewportId, sourceViewportId]);
})
.reduce((acc, c) => acc.concat(c), []);
toUnregister.forEach(viewportIdPair => {
utilities.spatialRegistrationMetadataProvider.add(viewportIdPair, undefined);
});
}
/**
* Check if the synchronizer type is IMAGE_SLICE
* Need to convert to lowercase here because the types are lowercase
* e.g: synchronizerCreators
* @param synchronizer
*/
isImageSliceSyncronizer(synchronizer: Synchronizer) {
return this.getSynchronizerType(synchronizer).toLowerCase() === IMAGE_SLICE;
}
/**
* Returns the syncronizer type
* @param synchronizer
*/
getSynchronizerType(synchronizer: Synchronizer): string {
const synchronizerTypes = Object.keys(this.synchronizersByType);
const syncType = synchronizerTypes.find(syncType =>
this.getSynchronizersOfType(syncType).includes(synchronizer)
);
return syncType;
}
}
@@ -1,4 +1,5 @@
import { ToolGroupManager, Enums, Types } from '@cornerstonejs/tools';
import { eventTarget } from '@cornerstonejs/core';
import { Types as OhifTypes, pubSubServiceInterface } from '@ohif/core';
import getActiveViewportEnabledElement from '../../utils/getActiveViewportEnabledElement';
@@ -6,6 +7,8 @@ import getActiveViewportEnabledElement from '../../utils/getActiveViewportEnable
const EVENTS = {
VIEWPORT_ADDED: 'event::cornerstone::toolgroupservice:viewportadded',
TOOLGROUP_CREATED: 'event::cornerstone::toolgroupservice:toolgroupcreated',
TOOL_ACTIVATED: 'event::cornerstone::toolgroupservice:toolactivated',
PRIMARY_TOOL_ACTIVATED: 'event::cornerstone::toolgroupservice:primarytoolactivated',
};
type Tool = {
@@ -38,18 +41,26 @@ export default class ToolGroupService {
EVENTS: { [key: string]: string };
constructor(serviceManager) {
const { cornerstoneViewportService, viewportGridService } = serviceManager.services;
const { cornerstoneViewportService, viewportGridService, uiNotificationService } =
serviceManager.services;
this.cornerstoneViewportService = cornerstoneViewportService;
this.viewportGridService = viewportGridService;
this.uiNotificationService = uiNotificationService;
this.listeners = {};
this.EVENTS = EVENTS;
Object.assign(this, pubSubServiceInterface);
this._init();
}
onModeExit() {
this.destroy();
}
private _init() {
eventTarget.addEventListener(Enums.Events.TOOL_ACTIVATED, this._onToolActivated);
}
/**
* Retrieves a tool group from the ToolGroupManager by tool group ID.
* If no tool group ID is provided, it retrieves the tool group of the active viewport.
@@ -105,12 +116,14 @@ export default class ToolGroupService {
return toolGroup.getActivePrimaryMouseButtonTool();
}
public destroy() {
public destroy(): void {
ToolGroupManager.destroy();
this.toolGroupIds = new Set();
eventTarget.removeEventListener(Enums.Events.TOOL_ACTIVATED, this._onToolActivated);
}
public destroyToolGroup(toolGroupId: string) {
public destroyToolGroup(toolGroupId: string): void {
ToolGroupManager.destroyToolGroup(toolGroupId);
this.toolGroupIds.delete(toolGroupId);
}
@@ -222,6 +235,10 @@ export default class ToolGroupService {
toolInstance.configuration = config;
}
public getActivePrimaryMouseButtonTool(toolGroupId?: string): string {
return this.getToolGroup(toolGroupId)?.getActivePrimaryMouseButtonTool();
}
private _setToolsMode(toolGroup, tools) {
const { active, passive, enabled, disabled } = tools;
@@ -279,4 +296,23 @@ export default class ToolGroupService {
addTools(tools.disabled);
}
}
private _onToolActivated = (evt: Types.EventTypes.ToolActivatedEventType) => {
const { toolGroupId, toolName, toolBindingsOptions } = evt.detail;
const isPrimaryTool = toolBindingsOptions.bindings?.some(
binding => binding.mouseButton === Enums.MouseBindings.Primary
);
const callbackProps = {
toolGroupId,
toolName,
toolBindingsOptions,
};
this._broadcastEvent(EVENTS.TOOL_ACTIVATED, callbackProps);
if (isPrimaryTool) {
this._broadcastEvent(EVENTS.PRIMARY_TOOL_ACTIVATED, callbackProps);
}
};
}
@@ -24,6 +24,7 @@ import JumpPresets from '../../utils/JumpPresets';
const EVENTS = {
VIEWPORT_DATA_CHANGED: 'event::cornerstoneViewportService:viewportDataChanged',
VIEWPORT_VOLUMES_CHANGED: 'event::cornerstoneViewportService:viewportVolumesChanged',
};
/**
@@ -182,7 +183,7 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
const { lutPresentation, positionPresentation } = presentations;
if (lutPresentation) {
const { presentation } = lutPresentation;
if (viewport instanceof VolumeViewport) {
if (viewport instanceof BaseVolumeViewport) {
if (presentation instanceof Map) {
presentation.forEach((properties, volumeId) => {
viewport.setProperties(properties, volumeId);
@@ -531,6 +532,11 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
cameraProps: unknown
): string {
const viewportInfo = this.getViewportInfo(activeViewportId);
if (viewportInfo.getViewportType() === csEnums.ViewportType.VOLUME_3D) {
return null;
}
const { referencedImageId } = cameraProps;
if (viewportInfo?.contains(displaySetInstanceUID, referencedImageId)) {
return activeViewportId;
@@ -720,10 +726,14 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
}
public async setVolumesForViewport(viewport, volumeInputArray, presentations) {
const { displaySetService, toolGroupService } = this.servicesManager.services;
const { displaySetService, toolGroupService, viewportGridService } =
this.servicesManager.services;
const viewportInfo = this.getViewportInfo(viewport.id);
const displaySetOptions = viewportInfo.getDisplaySetOptions();
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(viewport.id);
const displaySet = displaySetService.getDisplaySetByUID(displaySetUIDs[0]);
const displaySetModality = displaySet?.Modality;
// Todo: use presentations states
const volumesProperties = volumeInputArray.map((volumeInput, index) => {
@@ -749,7 +759,7 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
}
if (displayPreset !== undefined) {
properties.preset = displayPreset;
properties.preset = displayPreset[displaySetModality] || displayPreset.default;
}
return { properties, volumeId };
@@ -793,6 +803,10 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
}
viewport.render();
this._broadcastEvent(this.EVENTS.VIEWPORT_VOLUMES_CHANGED, {
viewportInfo,
});
}
private _addSegmentationRepresentationToToolGroupIfNecessary(
@@ -1025,28 +1039,33 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
private performResize() {
const isImmediate = false;
const viewports = this.getRenderingEngine().getViewports();
try {
const viewports = this.getRenderingEngine().getViewports();
// Store the current position presentations for each viewport.
viewports.forEach(({ id }) => {
const presentation = this.getPositionPresentation(id);
this.beforeResizePositionPresentations.set(id, presentation);
});
// Store the current position presentations for each viewport.
viewports.forEach(({ id }) => {
const presentation = this.getPositionPresentation(id);
this.beforeResizePositionPresentations.set(id, presentation);
});
// Resize the rendering engine and render.
const renderingEngine = this.renderingEngine;
renderingEngine.resize(isImmediate);
renderingEngine.render();
// Resize the rendering engine and render.
const renderingEngine = this.renderingEngine;
renderingEngine.resize(isImmediate);
renderingEngine.render();
// Reset the camera for viewports that should reset their camera on resize,
// which means only those viewports that have a zoom level of 1.
this.beforeResizePositionPresentations.forEach((positionPresentation, viewportId) => {
this.setPresentations(viewportId, { positionPresentation });
});
// Reset the camera for viewports that should reset their camera on resize,
// which means only those viewports that have a zoom level of 1.
this.beforeResizePositionPresentations.forEach((positionPresentation, viewportId) => {
this.setPresentations(viewportId, { positionPresentation });
});
// Resize and render the rendering engine again.
renderingEngine.resize(isImmediate);
renderingEngine.render();
// Resize and render the rendering engine again.
renderingEngine.resize(isImmediate);
renderingEngine.render();
} catch (e) {
// This can happen if the resize is too close to navigation or shutdown
console.warn('Caught resize exception', e);
}
}
private resetGridResizeTimeout() {
@@ -1,4 +1,10 @@
import { Types, Enums } from '@cornerstonejs/core';
import {
Types,
Enums,
getEnabledElementByViewportId,
VolumeViewport,
utilities,
} from '@cornerstonejs/core';
import { Types as CoreTypes } from '@ohif/core';
import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
import getCornerstoneBlendMode from '../../utils/getCornerstoneBlendMode';
@@ -89,13 +95,30 @@ const DEFAULT_TOOLGROUP_ID = 'default';
// Return true if the data contains the given display set UID OR the imageId
// if it is a composite object.
const dataContains = (data, displaySetUID: string, imageId?: string): boolean => {
if (data.displaySetInstanceUID === displaySetUID) {
return true;
}
const dataContains = ({ data, displaySetUID, imageId, viewport }): boolean => {
if (imageId && data.isCompositeStack && data.imageIds) {
return !!data.imageIds.find(dataId => dataId === imageId);
}
if (imageId && (data.volumeId || viewport instanceof VolumeViewport)) {
const isAcquisition = !!viewport.getCurrentImageId();
if (!isAcquisition) {
return false;
}
const imageURI = utilities.imageIdToURI(imageId);
const hasImageId = viewport.hasImageURI(imageURI);
if (hasImageId) {
return true;
}
}
if (data.displaySetInstanceUID === displaySetUID) {
return true;
}
return false;
};
@@ -122,10 +145,20 @@ class ViewportInfo {
return false;
}
const { viewport } = getEnabledElementByViewportId(this.viewportId) || {};
if (this.viewportData.data.length) {
return !!this.viewportData.data.find(data => dataContains(data, displaySetUID, imageId));
return !!this.viewportData.data.find(data =>
dataContains({ data, displaySetUID, imageId, viewport })
);
}
return dataContains(this.viewportData.data, displaySetUID, imageId);
return dataContains({
data: this.viewportData.data,
displaySetUID,
imageId,
viewport,
});
}
public destroy = (): void => {
@@ -27,7 +27,11 @@ const CornerstoneViewportDownloadForm = ({
const activeViewportElement = enabledElement?.element;
const activeViewportEnabledElement = getEnabledElement(activeViewportElement);
const { viewportId: activeViewportId, renderingEngineId } = activeViewportEnabledElement;
const {
viewportId: activeViewportId,
renderingEngineId,
viewport: activeViewport,
} = activeViewportEnabledElement;
const toolGroup = ToolGroupManager.getToolGroupForViewport(activeViewportId, renderingEngineId);
@@ -93,7 +97,7 @@ const CornerstoneViewportDownloadForm = ({
renderingEngine.resize();
// Trigger the render on the viewport to update the on screen
downloadViewport.resetCamera();
// downloadViewport.resetCamera();
downloadViewport.render();
downloadViewportElement.addEventListener(
@@ -120,6 +124,12 @@ const CornerstoneViewportDownloadForm = ({
resolve({ dataUrl, width: newWidth, height: newHeight });
downloadViewportElement.removeEventListener(Enums.Events.IMAGE_RENDERED, updateViewport);
// for some reason we need a reset camera here, and I don't know why
downloadViewport.resetCamera();
const presentation = activeViewport.getViewPresentation();
downloadViewport.setView(activeViewport.getViewReference(), presentation);
downloadViewport.render();
}
);
});
@@ -161,7 +171,6 @@ const CornerstoneViewportDownloadForm = ({
downloadViewport.addActor(actor);
});
downloadViewport.setCamera(viewport.getCamera());
downloadViewport.render();
const newWidth = Math.min(width || image.width, MAX_TEXTURE_SIZE);
@@ -109,13 +109,10 @@ export function callLabelAutocompleteDialog(uiDialogService, callback, dialogCon
uiDialogService.create({
id: 'select-annotation',
centralize: true,
isDraggable: false,
showOverlay: true,
content: LabellingFlow,
defaultPosition: {
x: window.innerWidth / 2,
y: window.innerHeight / 2,
},
contentProps: {
labellingDoneCallback: labellingDoneCallback,
measurementData: { label: '' },
+16 -16
View File
@@ -1,4 +1,20 @@
const colormaps = [
{
ColorSpace: 'RGB',
Name: 'Grayscale',
name: 'Grayscale',
NanColor: [1, 0, 0],
RGBPoints: [0, 0, 0, 0, 1, 1, 1, 1],
description: 'Grayscale',
},
{
ColorSpace: 'RGB',
Name: 'X Ray',
name: 'X Ray',
NanColor: [1, 0, 0],
RGBPoints: [0, 1, 1, 1, 1, 0, 0, 0],
description: 'X Ray',
},
{
ColorSpace: 'RGB',
Name: 'hsv',
@@ -1579,22 +1595,6 @@ const colormaps = [
],
description: 'Siemens',
},
{
ColorSpace: 'RGB',
Name: 'X Ray',
name: 'X Ray',
NanColor: [1, 0, 0],
RGBPoints: [0, 1, 1, 1, 1, 0, 0, 0],
description: 'X Ray',
},
{
ColorSpace: 'RGB',
Name: 'Grayscale',
name: 'Grayscale',
NanColor: [1, 0, 0],
RGBPoints: [0, 0, 0, 0, 1, 1, 1, 1],
description: 'Grayscale',
},
];
export { colormaps };
@@ -1,6 +1,8 @@
import { Enums } from '@cornerstonejs/core';
const MIP = 'mip';
const MINIP = 'minip';
const AVG = 'avg';
export default function getCornerstoneBlendMode(blendMode: string): Enums.BlendModes {
if (!blendMode) {
@@ -11,5 +13,13 @@ export default function getCornerstoneBlendMode(blendMode: string): Enums.BlendM
return Enums.BlendModes.MAXIMUM_INTENSITY_BLEND;
}
throw new Error();
if (blendMode.toLowerCase() === MINIP) {
return Enums.BlendModes.MINIMUM_INTENSITY_BLEND;
}
if (blendMode.toLowerCase() === AVG) {
return Enums.BlendModes.AVERAGE_INTENSITY_BLEND;
}
throw new Error(`Unsupported blend mode: ${blendMode}`);
}
@@ -51,20 +51,27 @@ export default function interleaveCenterLoader({
* listen to it and as the other viewports are created we can set the volumes for them
* since volumes are already started loading.
*/
if (matchDetails.size !== viewportIdVolumeInputArrayMap.size) {
const uniqueViewportVolumeDisplaySetUIDs = new Set();
viewportIdVolumeInputArrayMap.forEach((volumeInputArray, viewportId) => {
volumeInputArray.forEach(volumeInput => {
const { volumeId } = volumeInput;
uniqueViewportVolumeDisplaySetUIDs.add(volumeId);
});
});
const uniqueMatchedDisplaySetUIDs = new Set();
matchDetails.forEach(matchDetail => {
const { displaySetsInfo } = matchDetail;
displaySetsInfo.forEach(({ displaySetInstanceUID }) => {
uniqueMatchedDisplaySetUIDs.add(displaySetInstanceUID);
});
});
if (uniqueViewportVolumeDisplaySetUIDs.size !== uniqueMatchedDisplaySetUIDs.size) {
return;
}
// Check if all the matched volumes are loaded
for (const [_, details] of displaySetsMatchDetails.entries()) {
const { SeriesInstanceUID } = details;
// HangingProtocol has matched, but don't have all the volumes created yet, so return
if (!Array.from(volumeIdMapsToLoad.values()).includes(SeriesInstanceUID)) {
return;
}
}
const volumeIds = Array.from(volumeIdMapsToLoad.keys()).slice();
// get volumes from cache
const volumes = volumeIds.map(volumeId => {
@@ -37,6 +37,31 @@ export default function interleaveTopToBottom({
}
}
const filteredMatchDetails = [];
const displaySetsToLoad = new Set();
// Check all viewports that have a displaySet to be loaded. In some cases
// (eg: line chart viewports which is not a Cornerstone viewport) the
// displaySet is created on the client and there are no instances to be
// downloaded. For those viewports the displaySet may have the `skipLoading`
// option set to true otherwise it may block the download of all other
// instances resulting in blank viewports.
Array.from(matchDetails.values()).forEach(curMatchDetails => {
const { displaySetsInfo } = curMatchDetails;
let numDisplaySetsToLoad = 0;
displaySetsInfo.forEach(({ displaySetInstanceUID, displaySetOptions }) => {
if (!displaySetOptions?.options?.skipLoading) {
numDisplaySetsToLoad++;
displaySetsToLoad.add(displaySetInstanceUID);
}
});
if (numDisplaySetsToLoad) {
filteredMatchDetails.push(curMatchDetails);
}
});
/**
* The following is checking if all the viewports that were matched in the HP has been
* successfully created their cornerstone viewport or not. Todo: This can be
@@ -50,20 +75,27 @@ export default function interleaveTopToBottom({
* listen to it and as the other viewports are created we can set the volumes for them
* since volumes are already started loading.
*/
if (matchDetails.size !== viewportIdVolumeInputArrayMap.size) {
const uniqueViewportVolumeDisplaySetUIDs = new Set();
viewportIdVolumeInputArrayMap.forEach((volumeInputArray, viewportId) => {
volumeInputArray.forEach(volumeInput => {
const { volumeId } = volumeInput;
uniqueViewportVolumeDisplaySetUIDs.add(volumeId);
});
});
const uniqueMatchedDisplaySetUIDs = new Set();
matchDetails.forEach(matchDetail => {
const { displaySetsInfo } = matchDetail;
displaySetsInfo.forEach(({ displaySetInstanceUID }) => {
uniqueMatchedDisplaySetUIDs.add(displaySetInstanceUID);
});
});
if (uniqueViewportVolumeDisplaySetUIDs.size !== uniqueMatchedDisplaySetUIDs.size) {
return;
}
// Check if all the matched volumes are loaded
for (const [_, details] of displaySetsMatchDetails.entries()) {
const { SeriesInstanceUID } = details;
// HangingProtocol has matched, but don't have all the volumes created yet, so return
if (!Array.from(volumeIdMapsToLoad.values()).includes(SeriesInstanceUID)) {
return;
}
}
const volumeIds = Array.from(volumeIdMapsToLoad.keys()).slice();
// get volumes from cache
const volumes = volumeIds.map(volumeId => {
@@ -16,7 +16,8 @@ const Angle = {
csToolsEventDetail,
displaySetService,
CornerstoneViewportService,
getValueTypeFromToolType
getValueTypeFromToolType,
customizationService
) => {
const { annotation, viewportId } = csToolsEventDetail;
const { metadata, data, annotationUID } = annotation;
@@ -54,8 +55,9 @@ const Angle = {
const mappedAnnotations = getMappedAnnotations(annotation, displaySetService);
const displayText = getDisplayText(mappedAnnotations, displaySet);
const getReport = () => _getReport(mappedAnnotations, points, FrameOfReferenceUID);
const displayText = getDisplayText(mappedAnnotations, displaySet, customizationService);
const getReport = () =>
_getReport(mappedAnnotations, points, FrameOfReferenceUID, customizationService);
return {
uid: annotationUID,
@@ -127,7 +129,7 @@ This function is used to convert the measurement data to a format that is
suitable for the report generation (e.g. for the csv report). The report
returns a list of columns and corresponding values.
*/
function _getReport(mappedAnnotations, points, FrameOfReferenceUID) {
function _getReport(mappedAnnotations, points, FrameOfReferenceUID, customizationService) {
const columns = [];
const values = [];
@@ -160,7 +162,7 @@ function _getReport(mappedAnnotations, points, FrameOfReferenceUID) {
};
}
function getDisplayText(mappedAnnotations, displaySet) {
function getDisplayText(mappedAnnotations, displaySet, customizationService) {
if (!mappedAnnotations || !mappedAnnotations.length) {
return '';
}
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