feat: annotation persistence (local storage)

* Update button on DataSourceSelector

* Removed dead code ToolbarButtonNestedMenu, button spacing

.agents/skills/ohif-test-agent/SKILL.md

@@ -0,0 +1,346 @@
+---
+name: ohif-test-agent
+description: Generate runnable Playwright E2E tests for the OHIF Viewer using its custom fixture system, page objects, and normalized WebGL viewport coordinates. Use this skill whenever the user asks to write, add, modify, or debug tests in an OHIF/Viewers context — including vague asks like "write a test for X" when working in the OHIF repo, tests touching platform/app/tests/, or anything involving Cornerstone viewports, DICOM studies, measurements, segmentations, or OHIF modes/extensions. Prefer this skill over generic test-writing even if the user doesn't say "Playwright" or "E2E" explicitly.
+---
+
+# OHIF Test Agent
+
+This skill teaches you to generate correct, runnable Playwright end-to-end tests for the OHIF Viewer. Follow the workflow below.
+
+## Environment model
+
+This package follows the agentskills.io SKILL.md convention. `SKILL.md` is the entire behavior contract — there is no separate runtime entrypoint.
+
+## Workflow: how to write a new OHIF test
+
+1. **Classify the feature.** What area does the test belong to — a measurement tool, segmentation hydration, contour panel interaction, MPR layout, crosshairs, tag browser, etc.? The area determines the mode, the StudyInstanceUID, and the seed spec you'll read.
+2. **Read the seed spec.** Consult [references/patterns-by-feature.md](references/patterns-by-feature.md) to find the canonical existing spec for that area. Read it end-to-end before writing. This is the single most important step — OHIF specs follow consistent idioms that are easier to mimic than to reconstruct from first principles. (This mirrors Playwright's own agent guidance: use seed tests as the example for generated tests.)
+3. **Scaffold from the template.** Start from [assets/spec-template.ts](assets/spec-template.ts) — or copy the seed spec and adapt.
+4. **Look up specifics in the source, not from memory.** The reference files [page-objects.md](references/page-objects.md) and [utilities.md](references/utilities.md) capture the **stable rules** — fixture keys, import conventions, access idioms, the reasons certain things trip people up. They deliberately do not enumerate methods. For the current method surface or a utility's exact signature, open the relevant file under `tests/pages/` or `tests/utils/` — the source evolves, and the source is always right. The seed spec you picked in step 2 is usually the fastest second source, because it co-evolves with the API.
+5. **Run the test when execution is available.** `pnpm run test:e2e:ci` runs the whole suite, but for iteration use `TEST_ENV=true pnpm exec playwright test tests/YourNew.spec.ts` (or the Playwright VS Code extension). Invoke Playwright directly for targeted flags; `pnpm run test:e2e -- ...` inserts a `--` separator that can prevent Playwright from parsing options such as `--update-snapshots` and `--reporter`.
+6. **If runtime execution is unavailable, do static validation.** Validate import source, fixture keys, normalized viewport usage, UID/mode pairing, and hydration/tracking prompt handling. Then report clearly that execution was not performed.
+7. **If it fails, triage before debugging.** Use [references/failure-triage.md](references/failure-triage.md) — most OHIF test failures are timing / hydration, not real regressions.
+
+## Architecture
+
+OHIF uses Playwright with a custom fixture system. Tests are **not** vanilla Playwright — they import `test`, `expect`, and utilities from `./utils`, which re-exports an extended test runner that injects page objects.
+
+```text
+playwright.config.ts            → Chromium-only, port 3335, data-cy as testId
+  └─ tests/utils/fixture.ts     → Extends playwright-test-coverage, injects page objects
+       └─ tests/*.spec.ts       → Each imports { test, expect, ... } from './utils'
+            ├─ tests/pages/     → Page objects (ViewportPageObject, MainToolbarPageObject, …)
+            └─ tests/utils/     → Utilities (visitStudy, checkForScreenshot, screenShotPaths, …)
+```
+
+Why the custom fixture matters: the page objects are created for each test and bound to the right Playwright `page`. If you `new ViewportPageObject(page)` manually, you skip the fixture wiring and some sub-objects won't resolve correctly.
+
+### Import rule
+
+```ts
+// Correct
+import { test, expect, visitStudy, checkForScreenshot, screenShotPaths } from './utils';
+
+// Wrong — will compile but fixtures won't be injected
+import { test, expect } from '@playwright/test';
+```
+
+A few utilities (`press`, `downloadAsString`, the `assert*` helpers) are NOT re-exported from `./utils`. See [references/utilities.md](references/utilities.md) for the correct import path per utility.
+
+## The viewport is WebGL
+
+OHIF renders medical images onto a WebGL canvas. You cannot query *canvas* pixels by CSS selector. Use **normalized coordinates** (0–1 range, top-left is `{x:0, y:0}`) for clicks and drags, and **visual regression** (screenshot comparison) for canvas assertions. (Not everything in the viewport is canvas — some overlays render as SVG you *can* query via DOM, e.g. a vector overlay's color through `getSvgAttribute`. The canvas rule is about raster output painted onto the WebGL surface.)
+
+```ts
+const activeViewport = await viewportPageObject.active;
+
+await activeViewport.normalizedClickAt([{ x: 0.5, y: 0.5 }]);                 // click center
+await activeViewport.normalizedClickAt([{ x: 0.3, y: 0.3 }, { x: 0.7, y: 0.7 }]); // draw two points
+await activeViewport.normalizedClickAt([{ x: 0.5, y: 0.5 }], 'right');         // right-click
+await activeViewport.normalizedDragAt({
+  start: { x: 0.3, y: 0.3 },
+  end:   { x: 0.7, y: 0.7 },
+});
+```
+
+Pixel coordinates (`clickAt`, `doubleClickAt`) exist but prefer normalized for portability across viewport sizes.
+
+For DOM-rendered state (panel counts, dialog text, overlay text values, button enabled states), assert directly:
+
+```ts
+await expect(activeViewport.overlayText.bottomRight.instanceNumber).toContainText('17/');
+const count = await rightPanelPageObject.measurementsPanel.panel.getMeasurementCount();
+expect(count).toBe(1);
+```
+
+## Study loading lifecycle
+
+Every test follows this sequence. Skipping steps causes flakiness:
+
+```ts
+test.beforeEach(async ({ page }) => {
+  const studyInstanceUID = '1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5';
+  const mode = 'viewer';
+  await visitStudy(page, studyInstanceUID, mode, 2000); // 2s delay is the community norm
+});
+```
+
+`visitStudy` navigates to `/{mode}/ohif?StudyInstanceUIDs={uid}`, waits for `domcontentloaded`, then `networkidle`, then the explicit delay. Default delay is `0`, but most specs pass `2000` to let the first render settle.
+
+Delay by scene type (observed across the current suite, not a rule to apply blindly):
+
+| Scene | Delay |
+|-------|-------|
+| Default (viewer mode, 2D/MPR/3D layouts, crosshairs) | `2000` |
+| `mode: 'tmtv'` | `10000` — PET fusion + SUV calculation takes noticeably longer |
+
+Start at the convention for your scene; ramp only if the test flakes on initial render. 3D layouts in `viewer` mode already stay at `2000` — the stabilization problem there is solved with `attemptAction(() => reduce3DViewportSize(page), 10, 100)`, not with a longer `visitStudy` delay.
+
+If the study has DICOM SEG, RT, or SR data, OHIF asks whether to hydrate. Handle it:
+
+```ts
+await leftPanelPageObject.loadSeriesByModality('SEG'); // or 'RTSTRUCT', 'SR'
+await page.waitForTimeout(3000);                        // allow the prompt to appear
+await expect(DOMOverlayPageObject.viewport.segmentationHydration.locator).toBeVisible();
+await DOMOverlayPageObject.viewport.segmentationHydration.yes.click();
+```
+
+The first measurement you create triggers a "start tracking?" prompt:
+
+```ts
+await DOMOverlayPageObject.viewport.measurementTracking.confirm.click();
+```
+
+For 3D / MPR scenes, wrap stabilization in `attemptAction(() => reduce3DViewportSize(page), 10, 100)` or insert a `page.waitForTimeout(...)` after the layout change before asserting.
+
+## Wait for renders, don't sleep
+
+`page.waitForTimeout(...)` after an action that re-renders the viewport is a smell. The viewports tell us when they're done — use that signal. `tests/utils/waitForViewportsRendered.ts` exposes three helpers, all barrel-exported from `./utils`:
+
+- `waitForViewportRenderCycle(page)` — wait for the next full cycle: a viewport enters `needsRender`, then **all** viewports report `rendered` (and volumes are loaded, by default).
+- `waitForViewportsRendered(page)` — only the second half: wait until all viewports are `rendered`. Use this when the action has already requested a render before you started waiting (e.g. a layout change or `loadSeriesByDescription`).
+- `waitForAnyViewportNeedsRender(page)` — only the first half. Rarely needed directly.
+
+The canonical idiom — **start the watcher before the action, await it after**:
+
+```ts
+// start watching for the next render cycle
+const viewportRenderCycle = waitForViewportRenderCycle(page);
+
+await action(); // e.g. segmentationHydration.yes.click(), layoutSelection.MPR.click(), addSegmentation, etc.
+
+// wait for the render to finish
+await viewportRenderCycle;
+
+await check(); // e.g. checkForScreenshot, count assertion, overlay text
+```
+
+Why "start before"? `waitForViewportRenderCycle` first waits for a viewport to enter `needsRender`. If you start it **after** the action, that transition may already be over and you'll hang until the timeout. Starting it first captures the cycle the action is about to trigger.
+
+When to use which:
+
+| Situation | Helper |
+|-----------|--------|
+| Click that triggers a re-render and you want to assert after | `waitForViewportRenderCycle(page)` started before the click |
+| Layout switch / series load — render already in flight | `await waitForViewportsRendered(page)` after the call |
+| Compose with another await (e.g. screenshot the same time as load) | Save the promise, `await` it later |
+
+Replace patterns like this:
+
+```ts
+// ❌ Sleep-and-pray
+await action();
+await page.waitForTimeout(5000);
+await checkForScreenshot(...);
+
+// ✅ Wait on the actual signal
+const cycle = waitForViewportRenderCycle(page);
+await action();
+await cycle;
+await checkForScreenshot(...);
+```
+
+This shaves real wall-clock time off the suite and removes a class of flake (sleep too short → flake; sleep too long → slow). `tests/SEGHydrationFromMPR.spec.ts` is the canonical seed for this pattern.
+
+Caveats:
+- These helpers wait on Cornerstone viewport state. They won't help for purely DOM-side state (panel rows appearing, dialogs opening) — for those, prefer `expect(locator).toHaveCount(n)` / `toBeVisible()` which auto-retry, or `expect.toPass({ timeout })`.
+- For some actions (hanging-protocol changes are the documented example) the viewport doesn't transition through `needsRender` synchronously — those still need a short `waitForTimeout`. The source comment in `waitForViewportsRendered.ts` calls this out.
+
+## Fixture-injected page objects
+
+Destructure these from the test function argument. **Never `new` them manually.**
+
+```ts
+test('my test', async ({
+  page,
+  viewportPageObject,
+  mainToolbarPageObject,
+  leftPanelPageObject,
+  rightPanelPageObject,
+  DOMOverlayPageObject,          // note the capital D — this matches the fixture key
+  notFoundStudyPageObject,
+}) => { ... });
+```
+
+Two page objects are **not** fixture-injected:
+- `DataOverlayPageObject` — reach via `viewportPageObject.getById(id).overlayMenu.dataOverlay`.
+- `DicomTagBrowserPageObject` — reach via `DOMOverlayPageObject.dialog.dicomTagBrowser`.
+
+See [references/page-objects.md](references/page-objects.md) for fixture rules and a map of which file covers which concern; read the `.ts` file under `tests/pages/` for the current method surface.
+
+## When the control you need has no page object yet
+
+A spec must not reach for `page.getByTestId(...)` / `getByRole(...)` directly for
+application controls. If the button, menu, dialog, or field you need isn't already
+exposed by a page object, **add it to one — or create a new page object — instead of
+inlining a raw selector.** Raw selectors in a spec are the clearest sign a test was
+written without reading the existing suite: they duplicate locators, bypass the
+fixture wiring, and rot silently when the DOM changes.
+
+Where new coverage goes:
+
+| What you need | Where it belongs |
+|---|---|
+| A toolbar button or tool (Zoom, Pan) | a getter on `MainToolbarPageObject`, next to `crosshairs` / `measurementTools` |
+| A menu, prompt, context menu, or small dialog | `DOMOverlayPageObject` |
+| A substantial dialog with its own fields (User Preferences) | its **own** page object class, reached through `DOMOverlayPageObject` — follow `DicomTagBrowserPageObject` (`DOMOverlayPageObject.dialog.dicomTagBrowser`) |
+| Each field/row inside that dialog | a method or sub-object on the dialog's page object — not a raw selector in the spec |
+| A side-panel control | `LeftPanelPageObject` / `RightPanelPageObject` |
+
+If the control has no `data-cy`, **add `data-cy` to the source component** and target
+it — don't fall back to `getByRole`/text selectors, which are brittle and
+locale-sensitive (`testIdAttribute` is `data-cy`, so `getByTestId('Zoom')` resolves
+`[data-cy="Zoom"]`). Call out any `data-cy` you add so it ships in the same PR.
+
+**Worked example — "set the Zoom hotkey in User Preferences":** the options menu, the
+preferences dialog, each preference field, and the Zoom toolbar button should all be
+page-object surface — e.g. `mainToolbarPageObject.zoom`,
+`DOMOverlayPageObject.optionsMenu.settings.click()`,
+`DOMOverlayPageObject.dialog.userPreferences.hotkey('Zoom').set('q')`. The spec then
+reads as intent, not as a pile of `getByTestId` calls.
+
+## Assert the effect, not just the attribute
+
+Prefer asserting the actual rendered result over a proxy attribute. Activating Zoom and
+checking `data-active="true"` confirms the *button* toggled — not that zoom works. Drag
+on the viewport and assert the image actually zoomed (a viewport-scoped screenshot, or a
+measurable state change). Attribute checks are fine as a secondary signal, not the whole
+test.
+
+## Visual regression
+
+**Direction:** the suite is moving off *full-app* screenshots — not off screenshots
+altogether. "Avoid screenshots" means: don't screenshot the whole page, and don't
+screenshot something that has a faithful DOM/state signal. It does **not** mean avoid
+screenshots for output that is genuinely canvas-only — for that output a screenshot is
+the correct and required tool, and you should use it without apology. Older specs that
+screenshot the whole page are the legacy pattern being phased out; viewport-scoped
+screenshots are not.
+
+### Screenshot vs. DOM assertion — how to choose
+
+Reach for the cheapest *faithful* signal, in this order:
+
+1. **A faithful DOM/SVG/state signal exists → assert on it.** Panel counts, dialog and
+   overlay text, enabled/disabled state, and any overlay that renders as SVG (a vector
+   overlay's color is readable via `getSvgAttribute`) all have a DOM representation — assert
+   on it directly, no screenshot.
+2. **The thing under test is painted onto the WebGL canvas with no DOM representation → a
+   screenshot is correct and required.** Raster output on the canvas exposes no attribute to
+   read for a painted pixel. Scope a `checkForScreenshot` to the viewport (pane or grid) and
+   assert it — this is the right tool, not a last resort, whenever what you're verifying is
+   the rendered canvas itself.
+3. **Never substitute a service/state read for a render assertion.** Reading a service's
+   state (any `window.services...`) asserts the *data model*, not the pixels the user sees —
+   it passes even when rendering is broken. `page.evaluate(() => window.services...)` is an
+   escape hatch for *setup*, not for *appearance* assertions.
+
+For anything drawn onto the WebGL canvas with no DOM signal, compare a screenshot scoped to a specific viewport or the viewport grid:
+
+```ts
+await checkForScreenshot({
+  page,
+  locator: viewportPageObject.grid, // scope to the viewport grid — not the whole page
+  screenshotPath: screenShotPaths.length.lengthDisplayedCorrectly,
+});
+```
+
+`checkForScreenshot` retries up to 10 times at 500 ms intervals. Use `screenShotPaths.<category>.<name>` rather than a hand-typed string — the tree of valid keys lives in `tests/utils/screenShotPaths.ts`.
+
+Rules (apply to all new screenshot assertions):
+
+- **Use the object form.** The positional form is legacy; don't introduce it in new code, and don't treat existing positional-form usage as a pattern to copy.
+- **Never screenshot the full app.** Full-page screenshots include panels, toolbars, and dialogs that drift independently of what's under test and make baselines fragile. Scope by passing a `locator` — `viewportPageObject.grid` for the grid, or a specific viewport pane. A bare `normalizedClip: { x: 0, y: 0, width: 1, height: 1 }` with no `locator` is **not** scoping — it clips to the full page. Use `normalizedClip` only to target a sub-region *of a locator* (e.g. a scrollbar strip). If you reach for `fullPage: true`, stop and pick a locator.
+- **Do not tune `maxDiffPixelRatio` or `threshold`** to make a screenshot pass. If a baseline mismatches, regenerate it after a human review of the diff, or fix the underlying flake.
+
+## Playwright config facts worth remembering
+
+| Setting | Value | Why |
+|---------|-------|-----|
+| `baseURL` | `http://localhost:3335` | OHIF e2e uses 3335, not 3000 |
+| `testIdAttribute` | `data-cy` | `getByTestId(...)` maps to `[data-cy="..."]` |
+| `browser` | Chromium only | Firefox/WebKit disabled (SharedArrayBuffer + stability) |
+| `retries` | 3 in CI, 0 locally | Flaky rendering needs CI retries |
+| `workers` | 6 in CI, undefined locally | Parallel execution |
+| `globalTimeout` / `timeout` | 800_000 ms | Medical image loads are slow |
+| `actionTimeout` | 10_000 ms | Per-action cap |
+| `webServer.command` | `cross-env APP_CONFIG=config/e2e.js COVERAGE=true OHIF_PORT=3335 nyc yarn start` | e2e config + coverage |
+
+## Test data: which study for which test
+
+| StudyInstanceUID | Mode | Used for |
+|------------------|------|----------|
+| `1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5` | `viewer` | General measurements, annotations, context menu |
+| `1.3.6.1.4.1.14519.5.2.1.1706.8374.643249677828306008300337414785` | `viewer` | 3D, MPR, crosshairs |
+| `1.3.6.1.4.1.14519.5.2.1.256467663913010332776401703474716742458` | `viewer` or `segmentation` | Labelmap SEG |
+| `1.2.840.113619.2.290.3.3767434740.226.1600859119.501` | `viewer` / `segmentation` / `tmtv` | RTSTRUCT/contour and TMTV |
+| `1.3.6.1.4.1.14519.5.2.1.7695.4007.324475281161490036195179843543` | `viewer` | SR hydration |
+
+Full mapping in [references/patterns-by-feature.md](references/patterns-by-feature.md). **Do not invent UIDs** — they must exist on the e2e data server.
+
+## Rules (short, so they're actually read)
+
+1. Import `test`, `expect`, and utilities from `./utils`, not `@playwright/test`.
+2. Destructure fixture-injected page objects; don't `new` them.
+3. Use normalized coordinates (0–1) for viewport interactions.
+4. Use `visitStudy` with a real UID, correct mode, and a non-zero delay (2000 is conventional).
+5. Handle hydration and measurement-tracking prompts where applicable.
+6. Choose the faithful signal: DOM/SVG assertions where the rendered result has one (panels, dialogs, overlay text, SVG/vector overlays), a viewport-scoped screenshot when what you're verifying is canvas-only raster output, and never a `window.services` state read standing in for a render check. Screenshots use the object form, scoped via a `locator` — never the full app.
+7. Use `data-cy` selectors (already wired via `testIdAttribute`).
+8. When an assertion needs retry tolerance, wrap it in `expect.toPass({ timeout })`.
+9. Test in the correct mode — segmentation tools aren't available in `viewer` mode.
+10. If a utility isn't exported from `./utils`, import from the deeper path (see [references/utilities.md](references/utilities.md)).
+11. After an action that re-renders the viewport, prefer `waitForViewportRenderCycle(page)` (started before the action) over `page.waitForTimeout(...)`. See the "Wait for renders, don't sleep" section.
+12. Don't inline raw `page.getByTestId(...)` / `getByRole(...)` for app controls. If a control has no page object, create or augment one (see "When the control you need has no page object yet"), adding a `data-cy` to the source if needed.
+13. Assert the actual effect (e.g. the image zoomed), not just a proxy attribute like `data-active`.
+
+## Pre-output self-check (mandatory)
+
+Before returning a generated OHIF test, confirm all items:
+
+1. Imports `test`/`expect` from `./utils` (not `@playwright/test`).
+2. Uses fixture-injected keys and exact casing (especially `DOMOverlayPageObject`).
+3. Uses normalized viewport interactions (`normalizedClickAt` / `normalizedDragAt`) unless there is a strong reason otherwise.
+4. Uses a valid canonical StudyInstanceUID and compatible mode.
+5. Handles hydration or measurement tracking prompts when the workflow requires them.
+6. Uses the faithful signal for each assertion — DOM/SVG where the result has a DOM representation, a viewport-scoped screenshot when what's verified is canvas-only raster output, and never a `window.services` state read in place of a render check. Any `checkForScreenshot` call uses the object form, scoped via a `locator` (viewport pane or grid) — no full-app screenshots.
+7. Replaces `page.waitForTimeout(...)` after viewport-rendering actions with `waitForViewportRenderCycle(page)` (started before the action) — keeps `waitForTimeout` only for non-render waits like the hydration prompt in `beforeEach`.
+8. If execution was skipped, states that explicitly and provides concrete run commands.
+9. Every application control is reached through a page object — no raw `getByTestId`/`getByRole` in the spec for buttons, menus, dialogs, or fields. Any control not already covered was added to the right page object (or a new one), with a source `data-cy` if it lacked one.
+10. Assertions verify the real effect where feasible (e.g. the image visibly zoomed), not only an attribute toggle.
+
+## Output contract (for non-executing agents)
+
+When execution cannot be performed in the current environment, the response should include:
+
+1. The test code.
+2. Assumptions made (if any).
+3. Static checks that were verified.
+4. What still must be run locally and exact commands to run.
+
+## When to consult each reference
+
+- **Before writing** → [references/patterns-by-feature.md](references/patterns-by-feature.md). Pick the seed spec for the feature area and read it. The seed spec is the closest thing to a live API example because it co-evolves with the code.
+- **For a stable rule or idiom** (fixture keys, import paths, panel-access order, capital-D quirk, object-param convention) → [references/page-objects.md](references/page-objects.md), [references/utilities.md](references/utilities.md).
+- **For a method name, property, or signature** → read the source under `tests/pages/` or `tests/utils/`. Do not rely on a static table for these; they drift as the code is refactored.
+- **When a test fails** → [references/failure-triage.md](references/failure-triage.md).

.agents/skills/ohif-test-agent/assets/spec-template.ts

@@ -0,0 +1,54 @@
+import {
+  checkForScreenshot,
+  expect,
+  screenShotPaths,
+  test,
+  visitStudy,
+  waitForViewportRenderCycle,
+} from './utils';
+
+test.beforeEach(async ({ page }) => {
+  // Pick the right UID + mode for your feature (see references/patterns-by-feature.md)
+  const studyInstanceUID = '1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5';
+  const mode = 'viewer';
+  await visitStudy(page, studyInstanceUID, mode, 2000);
+});
+
+test.describe('FEATURE NAME', () => {
+  test('describes the behaviour in one sentence', async ({
+    page,
+    viewportPageObject,
+    mainToolbarPageObject,
+    rightPanelPageObject,
+    DOMOverlayPageObject, // capital D on purpose
+  }) => {
+    // 1. Arrange — select a tool, open a panel, etc.
+
+    // 2. Act — interact with the viewport.
+    //    Prefer normalized (0–1) coordinates:
+    //    const activeViewport = await viewportPageObject.active;
+    //    await activeViewport.normalizedClickAt([{ x: 0.3, y: 0.3 }, { x: 0.7, y: 0.7 }]);
+
+    //    For actions that re-render the viewport, gate on the render cycle
+    //    instead of sleeping — start the watcher BEFORE the action:
+    //    const cycle = waitForViewportRenderCycle(page);
+    //    await action();
+    //    await cycle;
+
+    // 3. Handle prompts (first measurement prompts for tracking; SEG/RT/SR prompts for hydration)
+    //    await DOMOverlayPageObject.viewport.measurementTracking.confirm.click();
+
+    // 4. Assert canvas output via visual regression — object form, scoped to the
+    //    viewport via a locator (not the full page). normalizedClip is only for
+    //    clipping to a sub-region of that locator.
+    //    await checkForScreenshot({
+    //      page,
+    //      locator: viewportPageObject.grid,
+    //      screenshotPath: screenShotPaths.YOUR_CATEGORY.YOUR_KEY,
+    //    });
+
+    // 5. Assert DOM state directly
+    //    const count = await rightPanelPageObject.measurementsPanel.panel.getMeasurementCount();
+    //    expect(count).toBe(1);
+  });
+});

.agents/skills/ohif-test-agent/references/failure-triage.md

@@ -0,0 +1,72 @@
+# Failure triage
+
+Before debugging, classify. Most OHIF test failures are timing or hydration — not real regressions.
+
+| Category | Symptom | Fix |
+|----------|---------|-----|
+| Timing | Element not visible, action timeout | Add / increase the `delay` param of `visitStudy`; for actions that re-render viewports, use `waitForViewportRenderCycle(page)` (started before the action) instead of `waitForTimeout`; wrap the assertion in `expect.toPass({ timeout })` |
+| Selector | Element not found | Verify `data-cy` on the target; confirm the panel is open (`toggle()` / `select()` before interacting); check for capital `D` in `DOMOverlayPageObject` when destructuring |
+| Hydration | Segmentation/RT/SR not interactive | Ensure the `segmentationHydration.yes.click()` fired; wait for an observable hydrated state such as measurement/segment rows or the target series overlay, then wait for the resulting viewport render |
+| Data | Study not found, empty viewport | Confirm the UID is in the canonical list (see [patterns-by-feature.md](patterns-by-feature.md)); confirm the mode supports the feature (segmentation tools aren't in `viewer` mode) |
+| Visual drift | Screenshot mismatch but feature works | Have a human review the diff, then regenerate the baseline with `TEST_ENV=true pnpm exec playwright test --update-snapshots`. Do not adjust `maxDiffPixelRatio` or `threshold` to make a failing screenshot pass. |
+| Real regression | Feature is actually broken | Report as a bug — this is the test doing its job |
+
+## Prefer render-cycle waits over sleeps
+
+If you're tempted to add `await page.waitForTimeout(2000)` after an action, ask whether the action re-rendered the viewport. If it did, use:
+
+```ts
+const cycle = waitForViewportRenderCycle(page);
+await action();
+await cycle;
+await check();
+```
+
+The watcher must be created **before** the action — it waits for `needsRender` first, and that transition is gone by the time the action returns. See the "Wait for renders, don't sleep" section in [SKILL.md](../SKILL.md) and `tests/SEGHydrationFromMPR.spec.ts`.
+
+### When the cycle helper times out at `waitForAnyViewportNeedsRender`
+
+Symptom: the test fails inside `waitForAnyViewportNeedsRender` after 5s, with the action having actually completed in the UI. The action just doesn't transition the viewport through `needsRender` synchronously. Known cases:
+
+- Hanging-protocol changes.
+- **RTSTRUCT / contour segmentation hydration confirm.** SEG (labelmap) hydration does fire `needsRender`; contour does not. The fix is to gate on the actual end-state — for hydration in `beforeEach`, `await expect(page.getByTestId('data-row')).toHaveCount(N)` is the right wait.
+
+Don't react by raising the cycle's timeout — the transition isn't coming. Replace the cycle wrapper with an auto-retrying DOM/SVG assertion, or `expect.toPass({ timeout })` around the assertion block.
+
+An immediate `waitForViewportsRendered(page)` can also return too early when a click dispatches work through an asynchronous state machine: the old viewport is already `rendered` before the new series or annotations are applied. In that case, first wait for the target state (for example, hydrated measurement rows or the expected series overlay), then call `waitForViewportsRendered(page)` to settle that state's render.
+
+## The `toPass` pattern
+
+When an assertion needs to wait for async render / propagation:
+
+```ts
+await expect(async () => {
+  await rightPanelPageObject.labelMapSegmentationPanel.panel.segmentByText('Spleen').click();
+  await expect(activeViewport.overlayText.bottomRight.instanceNumber).toContainText('17/');
+}).toPass({ timeout: 10_000 });
+```
+
+`toPass` reruns the assertion block until it succeeds or the timeout expires — cleaner than a hand-rolled retry loop and surfaces the last failure reason if it times out.
+
+## Common `DOMOverlayPageObject` mistake
+
+The fixture key is capital-D `DOMOverlayPageObject`, not lowercase. If your destructure is silently `undefined`, check the casing.
+
+## `press` import mistake
+
+`press` is NOT re-exported from `./utils`. `import { press } from './utils'` resolves to `undefined` and fails at runtime. Use:
+
+```ts
+import { press } from './utils/keyboardUtils';
+await press({ page, key: 'ArrowDown', nTimes: 50 }); // object param, not (page, key)
+```
+
+## Visual regression iteration
+
+Screenshots live under `tests/screenshots/chromium/<testFilePath>/`. To accept new output as the baseline:
+
+```sh
+TEST_ENV=true pnpm exec playwright test tests/YourSpec.spec.ts --update-snapshots
+```
+
+Review the resulting PNGs carefully — an agent-accepted baseline that's subtly wrong is worse than a failing test.

.agents/skills/ohif-test-agent/references/page-objects.md

@@ -0,0 +1,120 @@
+# OHIF Page Object guide
+
+> This file documents the **stable structural rules** of the page object system. For the current list of methods and properties on any class, **read the source under `tests/pages/`** — it is always authoritative, and it evolves as the product does. A static method table in a reference file goes stale the moment someone refactors; the source does not.
+
+## How to discover the API of a page object
+
+1. Find the relevant class in `tests/pages/`. File names match class names.
+2. Read it end-to-end once — most are under a few hundred lines.
+3. Some classes compose sub-objects (e.g. `RightPanelPageObject` holds a measurementsPanel, contourSegmentationPanel, labelMapSegmentationPanel, tmtvPanel, etc.). Those sub-objects usually live in the same file or a sibling under `tests/pages/`.
+4. To see how a method is actually used, grep `tests/` or open the seed spec listed in [patterns-by-feature.md](patterns-by-feature.md). Real usage beats a synthesized signature every time.
+
+Do not try to memorize a method surface from this file — it intentionally does not list one. It lists only the rules you cannot derive from the source by reading a single file.
+
+---
+
+## Stable rules
+
+### Fixture keys (case-sensitive)
+
+These are injected via `tests/utils/fixture.ts`. Destructure them from the test function's first argument — do not `new` them, because the fixture wires sub-objects to the correct `page` and hand-constructed instances skip that wiring.
+
+- `viewportPageObject`
+- `mainToolbarPageObject`
+- `leftPanelPageObject`
+- `rightPanelPageObject`
+- `DOMOverlayPageObject` — **capital D**. A silent `undefined` destructure is almost always a casing typo here.
+- `notFoundStudyPageObject`
+
+If the fixture file is updated and new keys are added, they will show up there first — check it if something feels missing.
+
+### Non-fixture page objects
+
+Some page object classes are not fixture-injected. They are reached through an injected fixture:
+
+- `DicomTagBrowserPageObject` → via `DOMOverlayPageObject.dialog.dicomTagBrowser`
+- `DataOverlayPageObject` → via `viewportPageObject.getById(viewportId).overlayMenu.dataOverlay`
+
+Both can be constructed manually (`new DataOverlayPageObject(page)`) if a test really needs a fresh instance, but the accessor path is the idiomatic one.
+
+### Viewport wrapper vs. viewport instance
+
+`viewportPageObject` is a **wrapper**. You almost always want a specific viewport out of it first:
+
+- `await viewportPageObject.active` — the currently focused viewport
+- `viewportPageObject.getAll()` — every viewport in the grid
+- `viewportPageObject.getNth(i)` — zero-indexed
+- `viewportPageObject.getById(cornerstoneViewportId)` — e.g. `'default'`, `'ctAXIAL'`
+
+The object these return is the one with `normalizedClickAt`, `normalizedDragAt`, `overlayText`, `nthAnnotation`, etc. Reach for the viewport instance first, then call methods on it.
+
+### Panel access order
+
+Every `rightPanelPageObject` sub-panel follows the same three-step idiom: **open the side panel, `.select()` the sub-panel tab, then interact with `.panel.*`**. Skipping either of the first two is the most common cause of "element not found".
+
+```ts
+await rightPanelPageObject.toggle();
+await rightPanelPageObject.measurementsPanel.select();
+const count = await rightPanelPageObject.measurementsPanel.panel.getMeasurementCount();
+```
+
+The exact row/action methods vary by panel — check the source file for the one you need.
+
+### Layout identifiers are camelCase JS properties
+
+`mainToolbarPageObject.layoutSelection.<layout>.click()` — access layouts by camelCase property name (e.g. `threeDFourUp`, `axialPrimary`), not with bracket-escaped DICOM-ish strings like `['3DFourUp']`. This is a convention enforced by how the class exposes its tools.
+
+### Sub-tools auto-open their dropdown
+
+Tools nested inside a toolbar dropdown (measurement tools, more tools, layouts) each expose a `.click()` that opens the parent menu for you. You almost never need to open the menu first. `await mainToolbarPageObject.measurementTools.length.click()` does both the expand and the select.
+
+### When the control you need isn't covered yet — create or augment
+
+The page objects here cover what the suite currently exercises. When your test needs a
+control that isn't exposed, **extend the page object system rather than dropping a raw
+`page.getByTestId(...)` into the spec.** A raw selector in a spec is the clearest tell
+that the author didn't read the existing tests — it duplicates a locator that should
+live in one place and bypasses the fixture wiring.
+
+| What you need | Where it goes | Precedent to copy |
+|---|---|---|
+| A toolbar button/tool (Zoom, Pan) | a getter on `MainToolbarPageObject` | `crosshairs`, `measurementTools` |
+| A menu / prompt / context menu / small dialog | `DOMOverlayPageObject` | `viewport.measurementTracking`, `dialog.input` |
+| A large dialog with its own fields (User Preferences) | a **new** page object class reached via `DOMOverlayPageObject` | `DicomTagBrowserPageObject` (`DOMOverlayPageObject.dialog.dicomTagBrowser`) |
+| Individual fields/rows in that dialog | methods/sub-objects on the dialog's page object | `DicomTagBrowserPageObject.seriesSelect` |
+| Side-panel controls | `LeftPanelPageObject` / `RightPanelPageObject` | existing sub-panels |
+
+Two more expectations:
+
+- **Missing `data-cy`?** Add it to the source component and target it; don't fall back
+  to `getByRole`/text. `testIdAttribute` is `data-cy`, so `getByTestId('Zoom')` resolves
+  `[data-cy="Zoom"]`. Mention any attribute you added so it ships in the same PR.
+- **Mirror the existing shape.** A new getter should look like its neighbors (return a
+  locator, or a small object with `.click()` etc.) so the new surface is
+  indistinguishable from what was already there.
+
+Example — a "set the Zoom hotkey" test should make `mainToolbarPageObject.zoom`, an
+options-menu accessor on `DOMOverlayPageObject`, and a `userPreferences` dialog page
+object (with a per-hotkey field accessor) exist — then the spec reads as steps, not
+selectors.
+
+---
+
+## Page object map — what each class is *for*
+
+This table exists to help you pick the right file to open, not to enumerate methods. Source of truth for any specific method remains the `.ts` file.
+
+| Class | File | Covers |
+|-------|------|--------|
+| ViewportPageObject | `tests/pages/ViewportPageObject.ts` | Cornerstone viewports — clicks, drags, overlays, annotations, crosshairs |
+| MainToolbarPageObject | `tests/pages/MainToolbarPageObject.ts` | Top toolbar — measurement tools, more tools, layouts, crosshairs, pan |
+| LeftPanelPageObject | `tests/pages/LeftPanelPageObject.ts` | Study browser — thumbnails, load by modality or description |
+| RightPanelPageObject | `tests/pages/RightPanelPageObject.ts` | Side panels — measurements, contour seg, labelmap seg, TMTV, microscopy |
+| DOMOverlayPageObject | `tests/pages/DOMOverlayPageObject.ts` | DOM overlays — dialogs, hydration/tracking prompts, context menus, tag-browser accessor |
+| NotFoundStudyPageObject | `tests/pages/NotFoundStudyPageObject.ts` | Study-not-found error page |
+| DicomTagBrowserPageObject | `tests/pages/DicomTagBrowserPageObject.ts` | Tag-browser dialog (non-fixture; reach via `DOMOverlayPageObject.dialog`) |
+| DataOverlayPageObject | `tests/pages/DataOverlayPageObject.ts` | Data-overlay menu (non-fixture; reach via `viewport.overlayMenu`) |
+
+If the directory adds or renames a file, that diff is your first clue and this table is your second — trust the directory.
+
+For live usage, the seed spec in [patterns-by-feature.md](patterns-by-feature.md) shows how a class is actually called; the source file tells you everything else that's on it.

.agents/skills/ohif-test-agent/references/patterns-by-feature.md

@@ -0,0 +1,148 @@
+# Seed specs by feature area
+
+> When writing a new OHIF test, find the closest feature area below and read the listed spec in full before writing. Playwright's own guidance says the seed test "serves as an example of all the generated tests" — that applies here.
+>
+> **If a spec listed below has moved or been renamed**, grep `tests/` for a remaining example (e.g. `grep -rn "loadSeriesByModality('RTSTRUCT')" tests/`). The pattern matters more than the exact filename — specs get renamed, the feature area persists.
+>
+> **No close match below?** This list only covers areas with a seed worth copying; don't add a stub for every untested area. See [Feature area not listed above?](#feature-area-not-listed-above-no-existing-seed).
+
+## Canonical study UIDs
+
+| UID | Mode(s) | What it has |
+|-----|---------|-------------|
+| `1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5` | `viewer` | CT — default for measurement/annotation tests |
+| `1.3.6.1.4.1.14519.5.2.1.1706.8374.643249677828306008300337414785` | `viewer` | CT volume for 3D/MPR/crosshairs |
+| `1.3.6.1.4.1.14519.5.2.1.256467663913010332776401703474716742458` | `viewer` or `segmentation` | CT + SEG for labelmap tests |
+| `1.2.840.113619.2.290.3.3767434740.226.1600859119.501` | `viewer` / `segmentation` / `tmtv` | CT + RTSTRUCT + PET, used for contour and TMTV |
+| `1.3.6.1.4.1.14519.5.2.1.7695.4007.324475281161490036195179843543` | `viewer` | SR structured report |
+
+Do not invent UIDs — they must exist on the e2e data server.
+
+---
+
+## 1. Simple measurement tools (length, angle, bidirectional, rectangle, ellipse, circle)
+
+**Seed:** `tests/Length.spec.ts`, `tests/Angle.spec.ts`
+
+Pattern: select tool via `mainToolbarPageObject.measurementTools.<tool>.click()`, place N points via `activeViewport.normalizedClickAt([...])`, confirm the tracking prompt, screenshot via `screenShotPaths.<name>.<name>DisplayedCorrectly`.
+
+## 2. Freehand / spline / livewire ROIs
+
+**Seed:** `tests/FreehandROI.spec.ts`, `tests/Livewire.spec.ts`, `tests/Spline.spec.ts`
+
+Pattern: `normalizedDragAt({ start, end, config: { steps: 20, delay: 30 } })` for smooth strokes; `subscribeToMeasurementAdded` to assert the event fires; `activeViewport.nthAnnotation(0)` to reference what was drawn.
+
+## 3. Annotations (arrow, probe)
+
+**Seed:** `tests/ArrowAnnotate.spec.ts`, `tests/Probe.spec.ts`
+
+Arrow annotate opens `DOMOverlayPageObject.dialog.input` for the label. Use `fillAndSave(label)`.
+
+## 4. Measurement panel interactions
+
+**Seed:** `tests/MeasurementPanel.spec.ts`
+
+Panel access: `rightPanelPageObject.toggle()` → `.measurementsPanel.select()` → `.panel.nthMeasurement(i)` → `.actions.rename|delete|toggleLock|duplicate|...`. Also demonstrates `addLengthMeasurement(page)` and panel-row `click()` for jump-to.
+
+## 5. Context menu (right-click on annotation)
+
+**Seed:** `tests/ContextMenu.spec.ts`
+
+Two ways to open: `activeViewport.normalizedClickAt([{...}], 'right')` on an empty area, or `activeViewport.nthAnnotation(0).contextMenu.open()` on a drawn annotation. Then `DOMOverlayPageObject.viewport.annotationContextMenu.addLabel|delete.click()`.
+
+## 6. Labelmap segmentation (SEG) hydration
+
+**Seed:** `tests/SEGHydration.spec.ts`, `tests/SEGHydrationThenMPR.spec.ts`
+
+Flow: `leftPanelPageObject.loadSeriesByModality('SEG')` → `waitForTimeout(3000)` → `DOMOverlayPageObject.viewport.segmentationHydration.yes.click()`. Often pokes Cornerstone state directly via `page.evaluate(() => window.cornerstone...)` for zoom/render.
+
+## 7. Contour segmentation (RTSTRUCT) + interactions
+
+**Seeds:**
+- Hydration: `tests/RTHydration.spec.ts`
+- Rename: `tests/ContourSegmentRename.spec.ts`
+- Navigation between segments: `tests/ContourSegNavigation.spec.ts`
+- Duplicate: `tests/ContourSegmentDuplicate.spec.ts`
+- Visibility: `tests/ContourSegmentToggleVisibility.spec.ts`
+- Locking: `tests/ContourSegLocking.spec.ts`
+
+Pattern: load RTSTRUCT series → hydrate → use `rightPanelPageObject.contourSegmentationPanel.panel.nthSegment(i)` / `.segmentByText('Small Sphere')` and their `.actions.rename|delete`, or the segment's `.click()` to jump.
+
+## 8. Labelmap segmentation editing (brush / eraser / threshold)
+
+**Seed:** `tests/LabelMapSegLocking.spec.ts`, `tests/SEGDrawingToolsResizing.spec.ts`
+
+Pattern: `rightPanelPageObject.labelMapSegmentationPanel.tools.brush.setRadius(n)` / `.click()`, then `activeViewport.normalizedDragAt(...)` to paint.
+
+## 9. TMTV / PET
+
+**Seeds:** `tests/TMTVCSVReport.spec.ts`, `tests/TMTVSUV.spec.ts`, `tests/TMTVAlignment.spec.ts`, `tests/TMTVRendering.spec.ts`
+
+Visit `mode: 'tmtv'` with a longer delay (`10000`). `rightPanelPageObject.tmtvPanel` for the side panel. Exporting a report uses `page.waitForEvent('download')` + `downloadAsString(download)`.
+
+## 10. MPR and 3D layouts
+
+**Seeds:** `tests/MPR.spec.ts`, `tests/3DOnly.spec.ts`, `tests/3DFourUp.spec.ts`, `tests/3DMain.spec.ts`, `tests/AxialPrimary.spec.ts`
+
+Pattern: `mainToolbarPageObject.layoutSelection.<layoutName>.click()`. For 3D, wrap stabilization with `attemptAction(() => reduce3DViewportSize(page), 10, 100)` to settle the render before asserting.
+
+## 11. Crosshairs
+
+**Seed:** `tests/Crosshairs.spec.ts`
+
+Pattern: `initializeMousePositionTracker(page)` in `beforeEach`, `mainToolbarPageObject.crosshairs.click()`, then `viewportPageObject.crosshairs.axial.rotate()` / `.increase()`.
+
+## 12. Overlays — data overlay menu, window/level, orientation
+
+**Seeds:** `tests/DataOverlayMenu.spec.ts`, `tests/WindowLevelOverlayText.spec.ts`, `tests/MultipleSegmentationDataOverlays.spec.ts`
+
+Pattern: `viewportPageObject.getById('default').overlayMenu.dataOverlay.toggle()`, then `.addSegmentation(name)` / `.changeSegmentation(from, to)` / `.remove(name)`. For keyboard navigation, remember `press({ page, key, nTimes })` imports from `./utils/keyboardUtils`.
+
+## 13. DICOM Tag Browser
+
+**Seed:** `tests/DicomTagBrowser.spec.ts`
+
+Open with `mainToolbarPageObject.moreTools.tagBrowser.click()`, then interact via `DOMOverlayPageObject.dialog.dicomTagBrowser.waitVisible()` / `.seriesSelect.selectOption(i)` / `.seriesSelect.getOptionText(i)`.
+
+## 14. Study validation / not-found / worklist
+
+**Seeds:** `tests/StudyValidation.spec.ts`, `tests/Worklist.spec.ts`
+
+These are the rare specs that use `page.goto(...)` directly instead of `visitStudy()` — because they test error states or non-study pages. `notFoundStudyPageObject` gives you `errorMessage`, `returnMessage`, `studyListLink`.
+
+## 15. SR (Structured Report) hydration
+
+**Seeds:** `tests/SRHydration.spec.ts`, `tests/SRHydrationThenReload.spec.ts`
+
+Same shape as SEG hydration but load via `loadSeriesByModality('SR')`.
+
+## Feature area not listed above? (no existing seed)
+
+Don't add a stub section here for an untested area. When your target isn't listed:
+
+1. **Look for an indirect seed.** Grep `tests/` for the controls or flow you need
+   (`grep -rn "options-menu" tests/`, a related panel/dialog). An adjacent area's seed
+   usually still shows how the harness is driven.
+2. **If genuinely uncovered, you're *creating* page objects.** Read
+   [page-objects.md](page-objects.md) → "When the control you need isn't covered yet", then:
+   - One page object per new control. Dialogs follow `DicomTagBrowserPageObject` (reached
+     through `DOMOverlayPageObject`); toolbar buttons get a getter on `MainToolbarPageObject`.
+   - Add a `data-cy` to any control that lacks one.
+   - **Verify the real effect, not a proxy** — drag and screenshot that the image moved via
+     `locator: viewportPageObject.grid`, not just that a button gained `data-active`.
+
+**Example — user preferences / hotkeys (no seed today):** open the options menu and User
+Preferences dialog (options-menu accessor on `DOMOverlayPageObject` + a `userPreferences`
+dialog page object reached through it), set the hotkey, save, then trigger it and confirm the
+viewport effect (activate Zoom, drag, screenshot the zoom). Add the Zoom button as a getter on
+`MainToolbarPageObject`.
+
+---
+
+## Advanced patterns worth knowing
+
+- **`subscribeToMeasurementAdded`** (`tests/FreehandROI.spec.ts`) — for async "was a measurement actually added?" assertions. Always `try { ... } finally { await measurementAdded.unsubscribe() }`.
+- **`attemptAction`** (`tests/3DOnly.spec.ts`) — retry flaky setup (3D render, heavy layout change) without silencing real failures.
+- **`addOHIFConfiguration`** (`tests/RTHydrationDisableConfirmation.spec.ts`) — pre-load config overrides before `visitStudy`.
+- **`page.evaluate(() => window.services...)`** — used in several SEG/SR specs to set customizations or poke viewport state. Treat as an escape hatch, not a default.
+- **`expect.toPass({ timeout })`** — wrap flaky assertions (common for jump-to-measurement tests where rendering settles asynchronously).

.agents/skills/ohif-test-agent/references/utilities.md

@@ -0,0 +1,100 @@
+# OHIF Test Utility guide
+
+> This file documents the **stable import rules and conventions** around `tests/utils/`. For the current list of exported helpers and their exact signatures, **read `tests/utils/index.ts` and the files it re-exports** — the barrel is always current; a static table here is not. Utilities get added, renamed, and refactored; the rules below change much more slowly.
+
+## How to discover what's available
+
+1. Open `tests/utils/index.ts`. Every symbol exported from the barrel is importable as `import { foo } from './utils'`.
+2. If what you need isn't in the barrel, look in the rest of `tests/utils/` — there are a handful of specialized files (`keyboardUtils.ts`, `assertions.ts`, `download.ts`, …). These need the **deeper import path**; see the rule below.
+3. For the actual signature, read the utility's `.ts` file. It's one short function per file in most cases.
+4. To see a utility in context, grep `tests/` (`grep -rn visitStudy tests/`) — or open the seed spec for the relevant feature area ([patterns-by-feature.md](patterns-by-feature.md)). Existing specs are the most reliable signature reference because they co-evolve with the API.
+
+Do not guess parameter shapes from memory, and do not treat this file as an API catalog — it intentionally isn't one.
+
+---
+
+## Stable rules
+
+### Barrel vs. deep imports
+
+Two import styles exist. They are not interchangeable.
+
+```ts
+// Barrel — anything re-exported from tests/utils/index.ts
+import { test, expect, visitStudy, checkForScreenshot, screenShotPaths } from './utils';
+
+// Deep — for files NOT re-exported by the barrel
+import { press } from './utils/keyboardUtils';
+import { assertNumberOfModalityLoadBadges } from './utils/assertions';
+import { downloadAsString } from './utils/download';
+```
+
+If a symbol isn't in the barrel, `import { x } from './utils'` **compiles**, resolves `x` to `undefined`, and blows up at the first call site. Confirm by opening `tests/utils/index.ts` for your working revision. At the time of this writing, `press`, `downloadAsString`, and the `assert*` helpers live outside the barrel — but maintainers can move things in or out, so treat `index.ts` as the ground truth rather than this note.
+
+### Never import `test` / `expect` from `@playwright/test`
+
+```ts
+// ✅ Correct — gets the fixture-extended runner
+import { test, expect } from './utils';
+
+// ❌ Wrong — compiles, but every page-object fixture is silently undefined
+import { test, expect } from '@playwright/test';
+```
+
+If your test function's destructured arguments (like `viewportPageObject`) are `undefined`, this import is almost always why.
+
+### `visitStudy` — 2000 ms is a convention, not a default
+
+```ts
+await visitStudy(page, studyInstanceUID, mode, 2000);
+```
+
+The function's own default delay is `0`. Nearly every spec passes `2000` to let the first render settle. The one consistent exception is `mode: 'tmtv'`, where the suite uniformly uses `10000` because PET fusion and SUV calculation add real wall-clock cost before the UI is interactive.
+
+Notably, 3D layouts in `viewer` mode (3DOnly, 3DFourUp, 3DMain, 3DPrimary) and MPR also use `2000` — they're not "heavy" in the `visitStudy` sense. Their stabilization problem is solved at the interaction layer with `attemptAction(() => reduce3DViewportSize(page), 10, 100)`, not by a longer visit delay.
+
+So: pick `10000` when the mode is `tmtv`, `2000` otherwise, and only ramp up if a specific test flakes on first-render assertions. The delay is a good first lever for "not visible" flakes, but it's not a universal upgrade.
+
+### `checkForScreenshot` — use the object form, never screenshot the full app
+
+**This is the direction going forward** The suite is being migrated off *full-app* screenshots — not off screenshots altogether. Screenshots are the correct and required tool whenever what you're verifying is canvas-only raster output with no DOM signal; don't avoid them there. Avoid them only where a faithful DOM/SVG signal exists (e.g. a vector overlay's color via `getSvgAttribute`) or where you'd be capturing the whole app. See SKILL.md → "Screenshot vs. DOM assertion — how to choose". Any new spec must follow the rules below, and any modification to an older spec should bring it in line when reasonable.
+
+- **Object form** (required for all new specs): `checkForScreenshot({ page, screenshotPath, normalizedClip?, ... })`
+- **Positional form**: legacy. It still appears in older specs because they haven't been migrated yet. **Do not treat existing positional-form usage as a pattern to copy** — those specs are the thing being moved away from. Do not introduce the positional form in new code.
+
+**Hard rules for new screenshots:**
+
+1. Use the object form.
+2. Scope by passing a `locator` — `viewportPageObject.grid` for the whole grid, or a specific viewport pane locator. **Never screenshot the full app.** `normalizedClip` is computed *relative to the locator* (and defaults to the full page when no locator is given), so `{ x: 0, y: 0, width: 1, height: 1 }` alone does not scope anything — reserve `normalizedClip` for clipping to a sub-region of a locator. If you find yourself reaching for `fullPage: true`, stop and pass a locator instead.
+
+Do not tune `maxDiffPixelRatio` or `threshold` to make a screenshot pass — those are intentionally rarely touched and not the right knob for flakes. If a baseline mismatches, regenerate it (`--update-snapshots`) after a human review of the diff, or fix the underlying instability. Check the current signature in `tests/utils/checkForScreenshot.ts` if something looks off.
+
+### `screenShotPaths` — use keys, not raw strings
+
+```ts
+await checkForScreenshot({
+  page,
+  locator: viewportPageObject.grid,
+  screenshotPath: screenShotPaths.length.lengthDisplayedCorrectly,
+});
+```
+
+The full tree of categories lives in `tests/utils/screenShotPaths.ts`. When you need a new baseline, **add the key there and reference it by name** rather than typing a raw path. A typo in a key becomes a compile error instead of a silent mismatch, and other tests become discoverable through the object.
+
+### Object-param convention
+
+Many OHIF test utilities take a single **object argument** rather than positional arguments — notably `press({ page, key, nTimes? })`, the `simulate*` helpers, and the `assert*` helpers. If a call looks like it should work but throws "cannot read properties of undefined," check whether you're passing positional args to something that expects `{ page, ... }`.
+
+Read the one-line signature at the top of the utility's source file before calling it — it's faster than guessing, and it's always right.
+
+---
+
+## Utility shapes worth flagging
+
+Most utilities are obvious once you read the source; these earn a mention:
+
+- **`waitForViewportRenderCycle(page, options?)`** — preferred replacement for `page.waitForTimeout(...)` after any viewport-mutating action (hydration confirm, layout change, segmentation add, series load, etc.). Start it **before** the action, await it after — it captures the `needsRender → rendered` transition the action triggers. Use `waitForViewportsRendered(page)` (the second-half-only variant) when the render is already in flight before you can attach a watcher. Source: `tests/utils/waitForViewportsRendered.ts`. Seed: `tests/SEGHydrationFromMPR.spec.ts`. The "Wait for renders, don't sleep" section in [SKILL.md](../SKILL.md) covers the idiom in full.
+- **`subscribeToMeasurementAdded(page)`** — returns `{ waitFired(timeout?), unsubscribe() }`. Use in freehand/livewire/spline specs to assert the event fired. Always wrap in `try { ... } finally { await sub.unsubscribe() }` so a failing assertion doesn't leak the listener across tests.
+- **`attemptAction(action, attempts?, delay?)`** — retries a flaky async action without masking real failures. Mainly used to stabilize 3D scenes (`attemptAction(() => reduce3DViewportSize(page), 10, 100)`).
+
+For everything else, the pattern is: find a spec that uses it (see [patterns-by-feature.md](patterns-by-feature.md)), copy the shape, adapt.

.circleci/config.yml

@@ -1,26 +1,30 @@
 version: 2.1
 
+# ci: re-trigger pipeline
+
 orbs:
   codecov: codecov/codecov@1.0.5
   cypress: cypress-io/cypress@3.4.2
 
 defaults: &defaults
   docker:
-    - image: cimg/node:20.18.1
+    - image: cimg/node:24.15.0
       environment:
         TERM: xterm
         QUICK_BUILD: true
   working_directory: ~/repo
 
 commands:
-  install_bun:
+  install_pnpm:
     steps:
       - run:
-          name: Install Bun
+          name: Install pnpm
           command: |
-            curl -fsSL https://bun.sh/install | bash -s "bun-v1.2.23"
+            # The cimg/node global modules dir (/usr/local/lib/node_modules) is
-            echo 'export BUN_INSTALL="$HOME/.bun"' >> $BASH_ENV
+            # root-owned, so a plain `npm install -g` fails with EACCES. Install
-            echo 'export PATH="$BUN_INSTALL/bin:$PATH"' >> $BASH_ENV
+            # with sudo so the global pnpm binary lands in the shared prefix.
+            sudo npm install -g pnpm@11.5.2
+            echo 'export PATH="$(pnpm store path)/../.bin:$PATH"' >> $BASH_ENV
             source $BASH_ENV
 
 jobs:
@@ -28,16 +32,16 @@ jobs:
     <<: *defaults
     resource_class: large
     steps:
-      - install_bun
+      - install_pnpm
       - run: node --version
       - checkout
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: pnpm install --frozen-lockfile
       # RUN TESTS
       - run:
           name: 'JavaScript Test Suite'
-          command: bun run test:unit:ci
+          command: pnpm run test:unit:ci
       # platform/app
       - run:
           name: 'VIEWER: Combine report output'
@@ -71,17 +75,17 @@ jobs:
     steps:
       # Checkout code and ALL Git Tags
       - checkout
-      - install_bun
+      - install_pnpm
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: pnpm install --frozen-lockfile
       # Build & Test
       - run:
           name: 'Perform the versioning before build'
-          command: bun ./version.mjs
+          command: node ./version.mjs
       - run:
           name: 'Build the OHIF Viewer'
-          command: bun run build
+          command: pnpm run build
           no_output_timeout: 45m
       - run:
           name: 'Upload SourceMaps, Send Deploy Notification'
@@ -107,58 +111,55 @@ jobs:
     <<: *defaults
     resource_class: large
     steps:
-      - install_bun
+      - install_pnpm
       # Checkout code and ALL Git Tags
       - checkout
       - attach_workspace:
           at: ~/repo
-      # SECURITY AUDIT
+      # SECURITY AUDIT - only when pnpm-lock.yaml has changed
       - run:
           name: 'Security Audit - High Risk Vulnerabilities'
           command: |
-            echo "🔍 Running bun audit for security vulnerabilities..."
+            git fetch origin master 2>/dev/null || true
+            BASE_REF=$(git merge-base HEAD origin/master 2>/dev/null)
+            if [[ -z "$BASE_REF" ]]; then
+              echo "Could not determine base ref (e.g. shallow clone or no origin/master), skipping security audit."
+              exit 0
+            fi
+            CHANGED_FILES=$(git diff --name-only origin/master...HEAD 2>/dev/null || echo "")
+            if ! echo "$CHANGED_FILES" | grep -qx 'pnpm-lock.yaml'; then
+              echo "pnpm-lock.yaml unchanged - skipping security audit."
+              exit 0
+            fi
+            echo "pnpm-lock.yaml changed - running pnpm audit for security vulnerabilities..."
             echo "Checking for HIGH-RISK vulnerabilities..."
 
-            # Define ignored vulnerabilities with comments
+            if pnpm audit --audit-level high; then
-            IGNORED_VULNS=(
+              echo "No high-risk vulnerabilities found"
-              "GHSA-5j98-mcp5-4vw2"  # CVE-2025-64756 - glob is not used on the command line
+              echo "Security audit passed!"
-              "GHSA-8qq5-rm4j-mr97"  # CVE-2026-23745 - limited to build/dev environments
-              "GHSA-r6q2-hw4h-h46w"  # CVE-2026-23950 - limited to build/dev environments
-              "GHSA-34x7-hfp2-rc4v"  # CVE-2026-24842 - limited to build/dev environments
-            )
-
-            # Build ignore flags
-            IGNORE_FLAGS=""
-            for vuln in "${IGNORED_VULNS[@]}"; do
-              IGNORE_FLAGS="$IGNORE_FLAGS --ignore=$vuln"
-            done
-
-            if bun audit $IGNORE_FLAGS --audit-level high; then
-              echo "✅ No high-risk vulnerabilities found"
-              echo "🎉 Security audit passed!"
             else
               echo ""
-              echo "❌ HIGH-RISK VULNERABILITIES DETECTED!"
+              echo "HIGH-RISK VULNERABILITIES DETECTED!"
               echo "======================================"
               echo ""
-              echo "🔧 To fix these issues:"
+              echo "To fix these issues:"
-              echo "  1. Run: bun audit"
+              echo "  1. Run: pnpm audit"
               echo "  2. Review the vulnerability details"
               echo "  3. Update affected packages to secure versions"
               echo "  4. Test your changes"
-              echo "  5. Re-run: bun audit --audit-level high"
+              echo "  5. Re-run: pnpm audit --audit-level high"
               echo ""
-              echo "📋 Full audit report:"
+              echo "Full audit report:"
 
-              bun audit $IGNORE_FLAGS --audit-level low || true
+              pnpm audit || true
 
               echo ""
-              echo "❌ This build cannot proceed until high-risk vulnerabilities are resolved."
+              echo "This build cannot proceed until high-risk vulnerabilities are resolved."
               exit 1
             fi
       - run:
           name: Install Dependencies
-          command: bun install --frozen-lockfile
+          command: pnpm install
       - run:
           name: Avoid hosts unknown for github
           command: |
@@ -169,28 +170,34 @@ jobs:
             git config --global user.name "ohif-bot"
       - run:
           name: Authenticate with NPM registry
-          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
+          # Write the auth token to npm's per-user config (~/.npmrc), not the
+          # repo root. publish-package.mjs chdir's into each package dir to run
+          # `npm publish`, and npm only reads the project .npmrc from that dir
+          # plus the user .npmrc from $HOME -- it never sees ~/repo/.npmrc, so a
+          # root-level token yields ENEEDAUTH. Using ~/.npmrc also avoids
+          # clobbering the committed workspace-config .npmrc (node-linker=hoisted).
+          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/.npmrc
       - run:
           name: build half of the packages (to avoid out of memory in circleci)
           command: |
-            bun run build:package-all
+            pnpm run build:package-all
       - run:
           name: build the other half of the packages
           command: |
-            bun run build:package-all-1
+            pnpm run build:package-all-1
 
   NPM_PUBLISH:
     <<: *defaults
     resource_class: large
     steps:
-      - install_bun
+      - install_pnpm
       # Checkout code and ALL Git Tags
       - checkout
       - attach_workspace:
           at: ~/repo
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: pnpm install --frozen-lockfile
       - run:
           name: Avoid hosts unknown for github
           command: |
@@ -201,15 +208,21 @@ jobs:
             git config --global user.name "ohif-bot"
       - run:
           name: Authenticate with NPM registry
-          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
+          # Write the auth token to npm's per-user config (~/.npmrc), not the
+          # repo root. publish-package.mjs chdir's into each package dir to run
+          # `npm publish`, and npm only reads the project .npmrc from that dir
+          # plus the user .npmrc from $HOME -- it never sees ~/repo/.npmrc, so a
+          # root-level token yields ENEEDAUTH. Using ~/.npmrc also avoids
+          # clobbering the committed workspace-config .npmrc (node-linker=hoisted).
+          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/.npmrc
       - run:
           name: build half of the packages (to avoid out of memory in circleci)
           command: |
-            bun run build:package-all
+            pnpm run build:package-all
       - run:
           name: build the other half of the packages
           command: |
-            bun run build:package-all-1
+            pnpm run build:package-all-1
       - run:
           name: increase min time out
           command: |
@@ -221,14 +234,20 @@ jobs:
       - run:
           name: publish package versions
           command: |
-            bun ./publish-version.mjs
+            node ./publish-version.mjs
       - run:
-          name: Again set the NPM registry (was deleted in the version script)
+          name: Re-assert the NPM auth token before publishing
-          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
+          # Write the auth token to npm's per-user config (~/.npmrc), not the
+          # repo root. publish-package.mjs chdir's into each package dir to run
+          # `npm publish`, and npm only reads the project .npmrc from that dir
+          # plus the user .npmrc from $HOME -- it never sees ~/repo/.npmrc, so a
+          # root-level token yields ENEEDAUTH. Using ~/.npmrc also avoids
+          # clobbering the committed workspace-config .npmrc (node-linker=hoisted).
+          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/.npmrc
       - run:
           name: publish package dist
           command: |
-            bun ./publish-package.mjs
+            node ./publish-package.mjs
       - persist_to_workspace:
           root: ~/repo
           paths:
@@ -250,8 +269,11 @@ jobs:
             if [[ ! -e version.txt ]]; then
               exit 0
             else
-              # Remove npm config
+              # Restore the committed .npmrc (pnpm workspace config such as
-              rm -f ./.npmrc
+              # node-linker=hoisted). NPM_PUBLISH overwrote it with a publish
+              # auth token, but the Dockerfile COPYs .npmrc for the in-image
+              # pnpm install, so it needs the config file present and token-free.
+              git checkout -- .npmrc
               # Set our version number using vars
               export IMAGE_VERSION=$(cat version.txt)
               export IMAGE_VERSION_FULL=v$IMAGE_VERSION
@@ -284,8 +306,11 @@ jobs:
             if [[ ! -e version.txt ]]; then
               exit 0
             else
-              # Remove npm config
+              # Restore the committed .npmrc (pnpm workspace config such as
-              rm -f ./.npmrc
+              # node-linker=hoisted). NPM_PUBLISH overwrote it with a publish
+              # auth token, but the Dockerfile COPYs .npmrc for the in-image
+              # pnpm install, so it needs the config file present and token-free.
+              git checkout -- .npmrc
               # Set our version number using vars
               export IMAGE_VERSION=$(cat version.txt)
               export IMAGE_VERSION_FULL=v$IMAGE_VERSION
@@ -322,7 +347,11 @@ jobs:
               exit 0
             else
               echo "Building and pushing Docker image from the master branch (beta releases)"
-              rm -f ./.npmrc
+              # Restore the committed .npmrc (pnpm workspace config such as
+              # node-linker=hoisted). NPM_PUBLISH overwrote it with a publish
+              # auth token, but the Dockerfile COPYs .npmrc for the in-image
+              # pnpm install, so it needs the config file present and token-free.
+              git checkout -- .npmrc
 
               # Set our version number using vars
               export IMAGE_VERSION=$(cat version.txt)
@@ -356,7 +385,11 @@ jobs:
               exit 0
             else
               echo "Building and pushing ARM64 Docker image from the master branch (beta releases)"
-              rm -f ./.npmrc
+              # Restore the committed .npmrc (pnpm workspace config such as
+              # node-linker=hoisted). NPM_PUBLISH overwrote it with a publish
+              # auth token, but the Dockerfile COPYs .npmrc for the in-image
+              # pnpm install, so it needs the config file present and token-free.
+              git checkout -- .npmrc
               # Set our version number using vars
               export IMAGE_VERSION=$(cat version.txt)
               export IMAGE_VERSION_FULL=v$IMAGE_VERSION
@@ -374,11 +407,21 @@ jobs:
     resource_class: large
     parallelism: 8
     steps:
+      - install_pnpm
       - run:
           name: Install System Dependencies
           command: |
-            sudo apt-get update
+            # CircleCI's base image registers third-party apt sources (git-lfs via
-            sudo apt-get install -y xvfb libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libgconf-2-4 libnss3 libxss1 libasound2 libxtst6
+            # packagecloud, git-core PPA via launchpad) that periodically hang
+            # `apt-get update`. The Cypress libs below all come from the Ubuntu
+            # archive, so drop those sources and bound the update with timeouts +
+            # retries so a slow mirror can't stall the job indefinitely.
+            sudo rm -f /etc/apt/sources.list.d/*git* || true
+            sudo apt-get update \
+              -o Acquire::Retries=3 \
+              -o Acquire::http::Timeout=20 \
+              -o Acquire::https::Timeout=20
+            sudo apt-get install -y xvfb libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libnss3 libxss1 libasound2t64 libxtst6
       - run:
           name: Start Xvfb
           command: Xvfb :99 -screen 0 1920x1080x24 &
@@ -387,11 +430,15 @@ jobs:
           name: Export Display Variable
           command: export DISPLAY=:99
       - cypress/install:
-          install-command: yarn install --frozen-lockfile --no-save
+          install-command: pnpm install
       - cypress/run-tests:
+          # CI runs headless under Xvfb with no GPU, so Electron uses software
+          # WebGL. Newer Chromium deprecated that implicit fallback (canvas
+          # rendering degrades and races with element clicks). ELECTRON_EXTRA_LAUNCH_ARGS
+          # is the reliable way to pass the opt-in flag to Cypress's Electron browser.
           cypress-command: |
-            npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
+            npx wait-on@latest http://localhost:3000 && cd platform/app && ELECTRON_EXTRA_LAUNCH_ARGS="--enable-unsafe-swiftshader" npx cypress run --record --parallel
-          start-command: yarn run test:data && yarn run test:e2e:serve
+          start-command: pnpm run test:data && pnpm run test:e2e:serve
 
   DOCKER_MULTIARCH_MANIFEST:
     <<: *defaults

.github/.dependabot.yaml

@@ -1,15 +1,9 @@
 version: 2
 enable-beta-ecosystems: true
 updates:
-  - package-ecosystem: 'bun'
-    directory: '/'
-    schedule:
-      interval: 'daily'
-    labels: ['dependencies']
-    commit-message:
-      prefix: 'chore'
-      include: 'scope'
   - package-ecosystem: 'npm'
+    # Disable all pull requests for npm/pnpm version updates.
+    open-pull-requests-limit: 0
     directory: '/'
     schedule:
       interval: 'daily'

.github/workflows/build-docs.yml

@@ -21,16 +21,29 @@ jobs:
       contents: read
       pull-requests: read
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3
-      - uses: oven-sh/setup-bun@v2
         with:
-          bun-version: 1.2.23
+          persist-credentials: false
-      - uses: actions/setup-node@v4
+      - uses: pnpm/action-setup@0e279bb959325dab635dd2c09392533439d90093 # v6.0.8
+      - uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
-          node-version: 20 # Or your desired Node version
+          node-version: 24.15.0
+          cache: pnpm
 
-      - name: Install root dependencies
+      - name: Configure git for private repos
-        run: bun install --frozen-lockfile
+        run: git config --global url."https://${GITHUB_TOKEN}:x-oauth-basic@github.com/".insteadOf ssh://git@github.com/
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Install dependencies
+        # Internal @ohif/* deps are workspace:* in the committed manifests and the
+        # lockfile records them as links, so pnpm-lock.yaml stays in sync across
+        # version bumps and a frozen install passes. Frozen is the right choice
+        # for a deploy job: it fails fast if a PR ever changed a real dependency
+        # without committing the lockfile update, instead of silently reconciling.
+        # (Exact versions appear only in published tarballs, where pnpm publish
+        # rewrites workspace:* at pack time -- not publish-version.mjs.)
+        run: pnpm install --frozen-lockfile
 
       # Removed Playwright tests and coverage generation steps
 
@@ -44,47 +57,44 @@ jobs:
           # Note: This relies on the merge commit being directly pushed to main
           PR_DATA=$(gh pr list --state merged --search "$MERGE_COMMIT_SHA" --json number,headRefOid --jq '.[0]')
           if [ -z "$PR_DATA" ]; then
-            echo "Could not find merged PR for commit $MERGE_COMMIT_SHA."
+            echo "::warning::Could not find merged PR for commit $MERGE_COMMIT_SHA. Skipping coverage embedding."
-            # Decide how to handle - fail, or maybe generate coverage now?
+            echo "coverage_found=false" >> $GITHUB_OUTPUT
-            # For now, let's fail.
+            exit 0
-            exit 1
           fi
           PR_HEAD_SHA=$(echo "$PR_DATA" | jq -r '.headRefOid')
           PR_NUMBER=$(echo "$PR_DATA" | jq -r '.number')
           echo "Found PR Number: $PR_NUMBER"
           echo "Found PR Head SHA: $PR_HEAD_SHA"
 
-          # Find the latest workflow run ID for the playwright workflow on the PR head commit
+          # Find the latest *successful* playwright.yml run for the PR head commit so we
-          # Uses the workflow file name 'playwright.yml'
+          # never embed coverage from a failed/incomplete run.
-          # Remove the --status success flag to find any run
+          RUN_ID=$(gh run list --workflow playwright.yml --commit "$PR_HEAD_SHA" --event pull_request --status success --json databaseId --jq '.[0].databaseId')
-          RUN_ID=$(gh run list --workflow playwright.yml --commit "$PR_HEAD_SHA" --event pull_request --json databaseId --jq '.[0].databaseId')
 
           if [ -z "$RUN_ID" ]; then
-            echo "Could not find any 'playwright.yml' run for PR $PR_NUMBER (Head SHA: $PR_HEAD_SHA)."
+            echo "::warning::Could not find a successful 'playwright.yml' run for PR $PR_NUMBER (Head SHA: $PR_HEAD_SHA). Skipping coverage embedding."
-            # Decide how to handle - maybe try finding the artifact from the merge commit run if that exists?
+            echo "coverage_found=false" >> $GITHUB_OUTPUT
-            # For now, let's fail.
+            exit 0
-            exit 1
           fi
           echo "Found Run ID: $RUN_ID"
           echo "run_id=$RUN_ID" >> $GITHUB_OUTPUT
+          echo "coverage_found=true" >> $GITHUB_OUTPUT
 
       - name: Download coverage artifact from PR run
+        if: steps.find_pr_run.outputs.coverage_found == 'true'
         env:
           GH_TOKEN: ${{ github.token }}
         run: |
           mkdir -p ./coverage-artifact
           gh run download ${{ steps.find_pr_run.outputs.run_id }} -n coverage-report-pr --dir ./coverage-artifact
-          # Check if download was successful (e.g., check if files exist)
+          # Verify the artifact contains an HTML coverage report rather than checking a single asset
-          if [ ! -f ./coverage-artifact/base.css ]; then
+          if [ -z "$(ls -A ./coverage-artifact)" ] || ! ls ./coverage-artifact/*.html >/dev/null 2>&1; then
-            echo "Failed to download or find expected files in artifact 'coverage-report-pr' from run ${{ steps.find_pr_run.outputs.run_id }}."
+            echo "Failed to download or find an HTML coverage report in artifact 'coverage-report-pr' from run ${{ steps.find_pr_run.outputs.run_id }}."
             exit 1
           fi
           echo "Artifact downloaded successfully."
 
-      - name: Install docs dependencies
-        run: cd platform/docs && bun install
-
       - name: Copy coverage to docs static directory
+        if: steps.find_pr_run.outputs.coverage_found == 'true'
         run: |
           # Copy files from the downloaded artifact directory
           mkdir -p platform/docs/static/coverage
@@ -99,12 +109,17 @@ jobs:
           cp ./coverage-artifact/sorter.js platform/docs/static/
 
       - name: Build docs
-        run: cd platform/docs && bun run build
+        run: pnpm --filter ohif-docs run build
 
       - name: Deploy to Netlify
-        run: |
+        # The docs are already built by the "Build docs" step above, so pass
-          cd platform/docs
+        # --no-build: `netlify deploy` runs the build command by default, which
-          npx netlify-cli deploy --dir=./build --prod
+        # would otherwise pick up the repo-root netlify.toml (configured for the
+        # main viewer app) and build the wrong project. --dir is resolved
+        # relative to the repo root (the netlify.toml base), not the cwd, so it
+        # must be the full path to the prebuilt docs output. --filter selects
+        # the ohif-docs package so Netlify CLI does not abort on monorepo detection.
+        run: npx netlify-cli deploy --filter ohif-docs --dir=platform/docs/build --prod --no-build
         env:
           NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
           NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}

.github/workflows/codeql.yml

@@ -55,7 +55,9 @@ jobs:
         # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3
+      with:
+        persist-credentials: false
 
     # Add any setup steps before running the `github/codeql-action/init` action.
     # This includes steps like installing compilers or runtimes (`actions/setup-node`
@@ -65,7 +67,7 @@ jobs:
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@v3
+      uses: github/codeql-action/init@dd903d2e4f5405488e5ef1422510ee31c8b32357 # v3.36.2
       with:
         languages: ${{ matrix.language }}
         build-mode: ${{ matrix.build-mode }}
@@ -93,6 +95,6 @@ jobs:
         exit 1
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v3
+      uses: github/codeql-action/analyze@dd903d2e4f5405488e5ef1422510ee31c8b32357 # v3.36.2
       with:
         category: "/language:${{matrix.language}}"

.github/workflows/playwright.yml

@@ -2,6 +2,19 @@ name: Playwright Tests
 on:
   pull_request:
     branches: [master, release/*]
+  workflow_dispatch:
+    inputs:
+      cs3d_ref:
+        description: >-
+          CS3D branch (e.g. main, origin:feat/foo) or version (e.g. 4.18.2, 4.19+, 4.x). Only used
+          when ohif-integration label is present or via workflow_dispatch.
+        required: false
+        default: '4.19+'
+
+permissions:
+  contents: read
+  pull-requests: read
+  issues: read
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -9,50 +22,211 @@ concurrency:
 
 jobs:
   playwright-tests:
-    timeout-minutes: 60
+    timeout-minutes: 120
-    runs-on: self-hosted
+    environment: fork-pr-approval
+    runs-on: [self-hosted, nashua]
     strategy:
       fail-fast: false
       matrix:
-        node-version: [20]
+        node-version: [24.15.0]
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3
-      - uses: oven-sh/setup-bun@v2
         with:
-          bun-version: 1.2.23
+          persist-credentials: false
-      - uses: actions/setup-node@v4
+      - uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
           node-version: ${{ matrix.node-version }}
-      - name: Install Yarn
+          # No `cache: pnpm`: this is a self-hosted runner with a persistent
-        run: npm install -g yarn@1.22.22
+          # pnpm store on local disk. The Actions cache doesn't preserve the
+          # pnpm self-install's links faithfully, dropping pnpm/dist/worker.js
+          # and breaking `pnpm install` with MODULE_NOT_FOUND.
+      # Install pnpm via Corepack instead of pnpm/action-setup. The action's
+      # self-installer is a JS action run under the runner's bundled
+      # externals/node{version} and derives the `npm` path from that runtime — which
+      # on this self-hosted runner is corrupted (Cannot find module
+      # '../lib/cli.js'), so it dies regardless of `standalone:true`. Corepack
+      # ships inside the Node that setup-node just installed, reads the pinned
+      # `packageManager` (pnpm@11.5.2) from package.json, and fetches pnpm via
+      # Node's own https — it never invokes the npm CLI.
+      - name: Enable Corepack (pnpm)
+        shell: bash
+        run: |
+          corepack enable
+          corepack prepare --activate
+
+      # ── CS3D integration: detect label and ref type ──────────────────────
+      - name: Check for CS3D integration label
+        id: cs3d-check
+        run: bash .scripts/ci/cs3d-check-integration.sh
+        env:
+          GH_TOKEN: ${{ github.token }}
+          EVENT_NAME: ${{ github.event_name }}
+          CS3D_REF_INPUT: ${{ github.event.inputs.cs3d_ref || '4.19+' }}
+          REPO: ${{ github.repository }}
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+
+      - name: Detect CS3D ref type
+        id: cs3d-ref
+        if: steps.cs3d-check.outputs.enabled == 'true'
+        run: |
+          REF="${CS3D_REF}"
+          if [[ "$REF" =~ ^[0-9]+\.[0-9x]+\+?(\.[0-9x]+)?(-[a-zA-Z0-9._]+)?$ ]]; then
+            echo "type=version" >> "$GITHUB_OUTPUT"
+            RESOLVED=$(node .scripts/cs3d-resolve-version.mjs "$REF")
+            echo "version=$RESOLVED" >> "$GITHUB_OUTPUT"
+            echo "::notice::CS3D version: $REF -> $RESOLVED"
+          else
+            echo "type=branch" >> "$GITHUB_OUTPUT"
+            echo "::notice::CS3D branch: $REF"
+          fi
+        env:
+          CS3D_REF: ${{ steps.cs3d-check.outputs.cs3d_ref }}
+
+      # ── CS3D branch path: clone and build before OHIF install ───────────
+      - name: Clone CS3D
+        if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'branch'
+        run: |
+          REF="${CS3D_REF}"
+          if [[ "$REF" == *:* ]]; then
+            REPO="https://github.com/${REF%%:*}/cornerstone3D.git"
+            BRANCH="${REF#*:}"
+          else
+            REPO="https://github.com/cornerstonejs/cornerstone3D.git"
+            BRANCH="$REF"
+          fi
+          echo "::notice::Cloning CS3D from $REPO branch $BRANCH"
+          git clone --depth 1 --branch "$BRANCH" "$REPO" libs/@cornerstonejs
+        env:
+          CS3D_REF: ${{ steps.cs3d-check.outputs.cs3d_ref }}
+
+      - name: Install & Build CS3D
+        if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'branch'
+        working-directory: libs/@cornerstonejs
+        run: pnpm install --frozen-lockfile && pnpm run build:esm
+
+      # ── Common: install OHIF dependencies ───────────────────────────────
       - name: Install dependencies
-        run: bun install --frozen-lockfile
+        run: pnpm install --frozen-lockfile
+
+      # ── CS3D branch path: link packages after OHIF install ──────────────
+      - name: Link CS3D packages
+        if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'branch'
+        working-directory: libs/@cornerstonejs
+        run: node scripts/link-ohif-cornerstone-node-modules.mjs "$GITHUB_WORKSPACE"
+
+      # ── CS3D version path: update versions after OHIF install ───────────
+      - name: Set CS3D version
+        if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'version'
+        run: |
+          node .scripts/cs3d-set-version.mjs "${CS3D_VERSION}"
+          pnpm install --no-frozen-lockfile
+        env:
+          CS3D_VERSION: ${{ steps.cs3d-ref.outputs.version }}
+
+      # ── Common: run tests ───────────────────────────────────────────────
       - name: Install Playwright browsers
-        run: npx playwright install
+        # Only chromium is used (see playwright.config.ts and tests/globalSetup.ts);
+        # firefox/webkit projects are commented out. Scoping the install to chromium
+        # avoids downloading + dep-validating browsers we never launch (the WebKit
+        # validation is what surfaces the "missing libwoff1/libflite1/..." error on
+        # hosts without those libs).
+        run: npx playwright install chromium
       - name: Run Playwright tests
         run: |
           export NODE_OPTIONS="--max_old_space_size=10192"
-          bun run test:e2e:coverage
+          bash .scripts/ci/with-nashua-lock.sh pnpm run test:e2e:coverage
+
+      # ── Common: collect test results and coverage ───────────────────────
       - name: Create directory of test results
         if: ${{ !cancelled() }}
         run: |
           mkdir -p packaged-test-results
           cp -r ./tests/test-results packaged-test-results/ || true
-          cp ./tests/playwright-report.json packaged-test-results/ || true
+          cp -r ./tests/playwright-report packaged-test-results/ || true
       - name: Upload directory of test results artifact
         if: ${{ !cancelled() }}
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
         with:
           name: playwright-results
           path: packaged-test-results/
           retention-days: 5
       - name: create the coverage report
         run: |
-          bun nyc report --reporter=lcov --reporter=text
+          pnpm exec nyc report --reporter=lcov --reporter=text
       - name: Upload the coverage report to GitHub Actions Artifacts
         if: ${{ !cancelled() }}
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
         with:
           name: coverage-report-pr
           path: coverage
           retention-days: 3
+
+      # ── CS3D: build and deploy preview to Netlify ───────────────────────
+      - name: Log build context (OHIF/CS3D branch and version for build diagnosis)
+        if: steps.cs3d-check.outputs.enabled == 'true'
+        run: |
+          if [[ "$CS3D_REF_TYPE" == "branch" ]]; then
+            echo "::notice::Build type: ohif-downstream | OHIF: ${{ github.repository }}@${{ github.ref }} (${{ github.sha }}) | CS3D: branch ${{ steps.cs3d-check.outputs.cs3d_ref }}"
+          else
+            echo "::notice::Build type: ohif-upstream | OHIF: ${{ github.repository }}@${{ github.ref }} (${{ github.sha }}) | CS3D: version ${{ steps.cs3d-ref.outputs.version }}"
+          fi
+          node .scripts/log-build-context.mjs
+        env:
+          BUILD_TYPE:
+            ${{ steps.cs3d-ref.outputs.type == 'branch' && 'ohif-downstream' || 'ohif-upstream' }}
+          CS3D_REF_TYPE: ${{ steps.cs3d-ref.outputs.type }}
+
+      - name: Build OHIF viewer (CS3D preview)
+        if: steps.cs3d-check.outputs.enabled == 'true'
+        run: pnpm run build:ci
+
+      - name: Deploy CS3D preview to Netlify
+        if: steps.cs3d-check.outputs.enabled == 'true'
+        run: |
+          RESULT=$(npx netlify-cli deploy --dir=platform/app/dist --alias="cs3d-pr-${PR_NUM}" --json --filter=@ohif/app) || {
+            echo "::error::Netlify deploy command failed"
+            exit 1
+          }
+          URL=$(echo "$RESULT" | jq -r '.deploy_url')
+          if [[ -z "$URL" || "$URL" == "null" ]]; then
+            echo "::error::Netlify deploy did not return a valid URL"
+            echo "$RESULT"
+            exit 1
+          fi
+          echo "::notice::CS3D preview deployed: $URL"
+        env:
+          NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+          NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
+          PR_NUM: ${{ github.event.pull_request.number || 'manual' }}
+
+      # ── CS3D: log results ───────────────────────────────────────────────
+      - name: Log CS3D build used
+        if: steps.cs3d-check.outputs.enabled == 'true'
+        run: |
+          if [[ "$CS3D_REF_TYPE" == "branch" ]]; then
+            echo "::notice::CS3D integration PASSED with branch ${CS3D_REF} (linked from libs/@cornerstonejs)"
+          else
+            echo "::notice::CS3D integration PASSED with @cornerstonejs/*@${CS3D_VERSION}"
+          fi
+        env:
+          CS3D_REF_TYPE: ${{ steps.cs3d-ref.outputs.type }}
+          CS3D_REF: ${{ steps.cs3d-check.outputs.cs3d_ref }}
+          CS3D_VERSION: ${{ steps.cs3d-ref.outputs.version }}
+
+  # ── Separate job: block merge when using a CS3D branch ─────────────
+  cs3d-branch-merge-guard:
+    name: 'CS3D Branch Merge Guard'
+    runs-on: ubuntu-latest
+    timeout-minutes: 5
+    steps:
+      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3
+        with:
+          persist-credentials: false
+      - name: Check for CS3D branch usage
+        run: bash .scripts/ci/cs3d-branch-merge-guard.sh
+        env:
+          GH_TOKEN: ${{ github.token }}
+          EVENT_NAME: ${{ github.event_name }}
+          CS3D_REF_INPUT: ${{ github.event.inputs.cs3d_ref || '4.19+' }}
+          REPO: ${{ github.repository }}
+          PR_NUMBER: ${{ github.event.pull_request.number }}

.gitignore

@@ -1,6 +1,7 @@
 # Packages
 node_modules
 .cursor/
+.claude/
 .nyc_output/
 # Output
 build
@@ -44,6 +45,7 @@ videos/
 
 # autogenerated files
 platform/app/src/pluginImports.js
+CLAUDE.md
 /Viewers.iml
 platform/app/.recipes/Nginx-Dcm4Chee/logs/*
 platform/app/.recipes/OpenResty-Orthanc/logs/*
@@ -59,7 +61,14 @@ tests/playwright-report/
 /blob-report/
 /playwright/.cache/
 
-**/.claude/settings.local.json
+# cornerstone3D local linking
+libs/
 
 # Backup files
 *~
+
+# cornerstone3D local linking
+libs/
+link-cs3d.js
+unlink-cs3d.js
+auth.json

.netlify/build-deploy-preview.sh

@@ -6,27 +6,21 @@ cd "$(dirname "$0")"
 cd .. # Up to project root
 
 # Helpful to verify which versions we're using
-echo 'My yarn version is... '
+echo 'My pnpm version is... '
 
-yarn -v
+pnpm -v
 node -v
 
 # Build && Move PWA Output
-yarn run build:ci
+pnpm run build:ci
 mkdir -p ./.netlify/www/pwa
 mv platform/app/dist/* .netlify/www/pwa -v
 echo 'Web application built and copied'
 
 # Build && Move Docusaurus Output (for the docs themselves)
-cd platform/docs
+pnpm --filter ohif-docs run build
-yarn install --frozen-lockfile
-yarn run build
-cd ../..
 mkdir -p ./.netlify/www/docs
 mv platform/docs/build/* .netlify/www/docs -v
 echo 'Docs built (docusaurus) and copied'
 
-# Cache all of the node_module dependencies in
-# extensions, modules, and platform packages
-yarn run lerna:cache
 echo 'Nothing left to see here. Go home, folks.'

.netlify/package.json

@@ -2,9 +2,8 @@
   "name": "root",
   "private": true,
   "engines": {
-    "node": ">=14",
+    "node": ">=24",
-    "npm": ">=6",
+    "pnpm": ">=11"
-    "yarn": ">=1.16.0"
   },
   "scripts": {
     "deploy": "netlify deploy --prod --dir ./../platform/app/dist"

.node-version

@@ -1 +1 @@
-20.9.0
+24.15.0

.npmrc

@@ -0,0 +1,5 @@
+node-linker=hoisted
+strict-peer-dependencies=false
+link-workspace-packages=true
+prefer-workspace-packages=true
+manage-package-manager-versions=false

.scripts/ci/cs3d-branch-merge-guard.sh

@@ -0,0 +1,42 @@
+#!/usr/bin/env bash
+# CS3D branch merge guard: blocks merge when tests ran against a CS3D branch (not a version).
+# Exits 0 when merge is allowed or guard is skipped; exits 1 when merge must be blocked.
+#
+# Required env: GH_TOKEN, EVENT_NAME, REPO, PR_NUMBER
+# Optional env: CS3D_REF_INPUT (for workflow_dispatch, default 4.19+)
+
+set -e
+
+if [[ "$EVENT_NAME" == "workflow_dispatch" ]]; then
+  echo "::notice::workflow_dispatch — no merge to block, skipping guard."
+  exit 0
+elif [[ "$EVENT_NAME" == "pull_request" ]]; then
+  LABELS=$(gh api "repos/${REPO}/issues/${PR_NUMBER}/labels" --jq '.[].name')
+  if echo "$LABELS" | grep -q "ohif-integration"; then
+    ENABLED=true
+    CS3D_REF=$(gh api "repos/${REPO}/pulls/${PR_NUMBER}" --jq '.body' \
+      | sed -n 's/^[[:space:]]*CS3D_REF:[[:space:]]*\([^[:space:]]*\).*/\1/p' | head -1)
+    if [[ -z "$CS3D_REF" ]]; then
+      CS3D_REF="4.19+"
+    fi
+  else
+    ENABLED=false
+  fi
+else
+  ENABLED=false
+fi
+
+if [[ "$ENABLED" != "true" ]]; then
+  echo "::notice::No ohif-integration label — skipping merge guard."
+  exit 0
+fi
+
+# Check if the ref is a branch (not a version)
+if [[ "$CS3D_REF" =~ ^[0-9]+\.[0-9x]+\+?(\.[0-9x]+)?(-[a-zA-Z0-9._]+)?$ ]]; then
+  echo "::notice::CS3D ref '$CS3D_REF' is a version — merge allowed."
+  exit 0
+fi
+
+echo "::error::Tests ran against CS3D branch '${CS3D_REF}' — this build cannot be merged."
+echo "::error::Re-run with a published CS3D version (e.g. 4.19+) before merging."
+exit 1

.scripts/ci/cs3d-check-integration.sh

@@ -0,0 +1,29 @@
+#!/usr/bin/env bash
+# CS3D integration check: detects ohif-integration label and parses CS3D_REF.
+# Writes to GITHUB_OUTPUT: enabled (true|false), cs3d_ref (when enabled).
+#
+# Required env: GH_TOKEN, EVENT_NAME, REPO, PR_NUMBER, GITHUB_OUTPUT
+# Optional env: CS3D_REF_INPUT (for workflow_dispatch, default 4.19+)
+
+set -e
+
+if [[ "$EVENT_NAME" == "workflow_dispatch" ]]; then
+  echo "enabled=true" >> "$GITHUB_OUTPUT"
+  echo "cs3d_ref=${CS3D_REF_INPUT:-4.19+}" >> "$GITHUB_OUTPUT"
+elif [[ "$EVENT_NAME" == "pull_request" ]]; then
+  LABELS=$(gh api "repos/${REPO}/issues/${PR_NUMBER}/labels" --jq '.[].name')
+  if echo "$LABELS" | grep -q "ohif-integration"; then
+    echo "enabled=true" >> "$GITHUB_OUTPUT"
+    REF=$(gh api "repos/${REPO}/pulls/${PR_NUMBER}" --jq '.body' \
+      | sed -n 's/^[[:space:]]*CS3D_REF:[[:space:]]*\([^[:space:]]*\).*/\1/p' | head -1)
+    if [[ -z "$REF" ]]; then
+      REF="4.19+"
+    fi
+    echo "cs3d_ref=${REF}" >> "$GITHUB_OUTPUT"
+    echo "::notice::CS3D ref from PR body: ${REF}"
+  else
+    echo "enabled=false" >> "$GITHUB_OUTPUT"
+  fi
+else
+  echo "enabled=false" >> "$GITHUB_OUTPUT"
+fi

.scripts/ci/with-nashua-lock.sh

@@ -0,0 +1,54 @@
+#!/usr/bin/env bash
+#
+# Run a command while holding the nashua Playwright mutex.
+#
+# Only one Playwright run may execute at a time on the shared nashua self-hosted
+# runner — across THIS repo (OHIF) AND the cornerstone3D repo. GitHub's
+# `concurrency:` is scoped per-repository and cannot coordinate across the two
+# orgs, so the mutex lives on the box's filesystem.
+#
+# This is OHIF's own copy (the script can't be shared across separate repos). It
+# MUST use the SAME lock path as cornerstone3D's copy (NASHUA_LOCK_FILE default
+# below) — if the paths differ, the mutex silently does nothing.
+#
+# flock holds the lock via fd 9 and it releases automatically when the wrapped
+# command exits — including on job cancel / timeout / SIGKILL — so there are no
+# stale locks to clean up.
+#
+# Usage: .scripts/ci/with-nashua-lock.sh <command> [args...]
+
+# Strict mode: -e abort on any unhandled command failure, -u treat use of an
+# unset variable as an error, -o pipefail make a pipeline fail if ANY stage
+# fails (not just the last). Catches mistakes early instead of pressing on.
+set -euo pipefail
+
+LOCK="${NASHUA_LOCK_FILE:-/var/tmp/nashua-playwright.lock}"   # MUST match cornerstone3D's copy
+LOCK_WAIT="${NASHUA_LOCK_WAIT:-5400}"                          # max seconds to wait
+
+# Guard: a command to wrap is required. With no arguments there is nothing to
+# run, so print usage and exit instead of silently grabbing and releasing the
+# lock for no reason (which would mask a mis-wired workflow step).
+if [ "$#" -eq 0 ]; then
+  echo "usage: $0 <command> [args...]" >&2
+  exit 2
+fi
+
+# Open the lock file on fd 9 (read-write, create if missing, never truncate).
+exec 9<>"$LOCK" || { echo "::error::cannot open lock file $LOCK"; exit 1; }
+
+# Try instantly; if busy, report who holds it, then block up to LOCK_WAIT.
+if ! flock -n 9; then
+  echo "nashua Playwright runner busy — held by: $(cat "${LOCK}.info" 2>/dev/null || echo unknown). Waiting up to ${LOCK_WAIT}s…"
+  if ! flock -w "$LOCK_WAIT" 9; then
+    echo "::error::Timed out after ${LOCK_WAIT}s waiting for the nashua Playwright lock"
+    exit 1
+  fi
+fi
+
+# Record the current holder for other jobs' "held by" message (best-effort).
+echo "${GITHUB_REPOSITORY:-local}#${GITHUB_RUN_ID:-0} @ $(date -u +%FT%TZ 2>/dev/null || true)" > "${LOCK}.info" 2>/dev/null || true
+echo "✅ Acquired nashua Playwright lock ($LOCK); running: $*"
+
+# Replace the shell with the command. fd 9 is inherited (not close-on-exec), so
+# the lock is held for the whole command and released when it exits.
+exec "$@"

.scripts/cs3d-check.mjs

@@ -0,0 +1,55 @@
+import fs from 'node:fs';
+import path from 'node:path';
+import { execSync } from 'node:child_process';
+
+const workflowPath = path.resolve(
+  process.cwd(),
+  'libs',
+  '@cornerstonejs',
+  '.github',
+  'workflows',
+  'ohif-downstream.yml'
+);
+
+if (!fs.existsSync(workflowPath)) {
+  console.error(`[cs3d:check] Workflow file not found: ${workflowPath}`);
+  process.exit(1);
+}
+
+const workflowText = fs.readFileSync(workflowPath, 'utf8');
+const ohifRefMatch = workflowText.match(/^\s*OHIF_REF:\s*["']?([^"'\r\n]+)["']?\s*$/m);
+
+if (!ohifRefMatch) {
+  console.error('[cs3d:check] Could not find OHIF_REF in ohif-downstream workflow.');
+  process.exit(1);
+}
+
+const expectedBranch = ohifRefMatch[1].trim();
+let currentBranch = '';
+
+try {
+  currentBranch = execSync('git rev-parse --abbrev-ref HEAD', {
+    cwd: process.cwd(),
+    encoding: 'utf8',
+  }).trim();
+} catch (error) {
+  console.error('[cs3d:check] Failed to determine current git branch.');
+  process.exit(1);
+}
+
+if (currentBranch !== expectedBranch) {
+  console.error(
+    `[cs3d:check] Branch mismatch: current='${currentBranch}', expected='${expectedBranch}' from ${path.relative(
+      process.cwd(),
+      workflowPath
+    )}`
+  );
+  process.exit(1);
+}
+
+console.log(
+  `[cs3d:check] OK: current branch '${currentBranch}' matches OHIF_REF in ${path.relative(
+    process.cwd(),
+    workflowPath
+  )}`
+);

.scripts/cs3d-resolve-version.mjs

@@ -0,0 +1,63 @@
+#!/usr/bin/env node
+
+/**
+ * Resolves a version pattern to a concrete npm version of @cornerstonejs/core.
+ *
+ * Patterns:
+ * 4.18.2         -> 4.18.2 (exact, returned as-is)
+ * 4.18.2-beta.3  -> 4.18.2-beta.3 (exact prerelease)
+ * 4.x            -> latest 4.* from npm
+ * 4.17.x         -> latest 4.17.* from npm
+ * 4.19+          -> latest >=4.19.0 <5.0.0-0 from npm (4.19 and later, same major)
+ *
+ * Prints the resolved version to stdout.
+ */
+
+import { execSync } from 'child_process';
+
+const pattern = process.argv[2];
+if (!pattern) {
+  console.error('Usage: cs3d-resolve-version.mjs <pattern>');
+  console.error(' e.g. 4.x, 4.17.x, 4.19+, 4.18.2, 4.18.2-beta.3');
+  process.exit(1);
+}
+
+// Exact version (no wildcard or range) — pass through unchanged
+if (!pattern.includes('x') && !pattern.endsWith('+')) {
+  console.log(pattern);
+  process.exit(0);
+}
+
+// Convert "M.m+" to npm semver range ">=M.m.0 <(M+1).0.0-0"
+let npmRange = pattern;
+const plusMatch = pattern.match(/^(\d+)\.(\d+)\+$/);
+if (plusMatch) {
+  const major = Number(plusMatch[1]);
+  const minor = Number(plusMatch[2]);
+  npmRange = `>=${major}.${minor}.0 <${major + 1}.0.0-0`;
+}
+
+try {
+  // Let npm resolve the range: @package@<range> → concrete version
+  const raw = execSync(`npm view @cornerstonejs/core@"${npmRange}" version --json`, {
+    encoding: 'utf8',
+    timeout: 30_000,
+  });
+
+  const resolved = JSON.parse(raw);
+  if (!resolved) {
+    console.error(`npm returned no version when resolving @cornerstonejs/core@${npmRange}`);
+    process.exit(1);
+  }
+
+  // npm may return an array of versions for ranges; pick the latest (last) one
+  const version = Array.isArray(resolved) ? resolved[resolved.length - 1] : resolved;
+  console.log(version);
+} catch (err) {
+  const message =
+    (err && (err.stderr?.toString() || err.message || String(err))) ||
+    `Unknown error resolving @cornerstonejs/core@${pattern}`;
+  console.error(`Failed to resolve @cornerstonejs/core version for pattern "${pattern}":`);
+  console.error(message);
+  process.exit(1);
+}

.scripts/cs3d-set-version.mjs

@@ -0,0 +1,131 @@
+#!/usr/bin/env node
+
+/**
+ * Updates all @cornerstonejs/* package versions across the OHIF workspace.
+ *
+ * Usage: node .scripts/cs3d-set-version.mjs <version>
+ *
+ * Only updates the 8 main CS3D packages (not codec packages):
+ *   adapters, ai, core, dicom-image-loader, labelmap-interpolation,
+ *   nifti-volume-loader, polymorphic-segmentation, tools
+ */
+
+import { readFileSync, writeFileSync, existsSync, readdirSync } from 'fs';
+import { resolve, dirname, join } from 'path';
+import { fileURLToPath } from 'url';
+
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const rootDir = resolve(__dirname, '..');
+
+const version = process.argv[2];
+if (!version) {
+  console.error('Usage: cs3d-set-version.mjs <version>');
+  console.error('  e.g. 4.18.2, 4.19.0-beta.1');
+  process.exit(1);
+}
+
+// The 8 CS3D packages that are built from source (not codecs)
+const CS3D_PACKAGES = [
+  '@cornerstonejs/adapters',
+  '@cornerstonejs/ai',
+  '@cornerstonejs/core',
+  '@cornerstonejs/dicom-image-loader',
+  '@cornerstonejs/labelmap-interpolation',
+  '@cornerstonejs/nifti-volume-loader',
+  '@cornerstonejs/polymorphic-segmentation',
+  '@cornerstonejs/tools',
+];
+
+// Read root package.json to get workspace globs
+const rootPkgPath = resolve(rootDir, 'package.json');
+const rootPkg = JSON.parse(readFileSync(rootPkgPath, 'utf8'));
+const workspaceGlobs = rootPkg.workspaces?.packages || rootPkg.workspaces || [];
+
+// Collect all package.json paths from workspace globs
+function findWorkspacePackageJsons() {
+  const paths = [rootPkgPath]; // include root
+
+  for (const pattern of workspaceGlobs) {
+    const parts = pattern.split('/');
+    let searchDir = rootDir;
+    let hasWildcard = false;
+
+    for (const part of parts) {
+      if (part === '*') {
+        hasWildcard = true;
+        break;
+      }
+      searchDir = join(searchDir, part);
+    }
+
+    if (hasWildcard) {
+      try {
+        const entries = readdirSync(searchDir, { withFileTypes: true });
+        for (const entry of entries) {
+          if (entry.isDirectory()) {
+            const pkgJson = join(searchDir, entry.name, 'package.json');
+            if (existsSync(pkgJson)) {
+              paths.push(pkgJson);
+            }
+          }
+        }
+      } catch {
+        // directory doesn't exist, skip
+      }
+    } else {
+      const pkgJson = join(rootDir, pattern, 'package.json');
+      if (existsSync(pkgJson)) {
+        paths.push(pkgJson);
+      }
+    }
+  }
+
+  return paths;
+}
+
+// Update a dependencies object, returning count of changes
+function updateDeps(deps, targetVersion) {
+  let count = 0;
+  if (!deps) return count;
+  for (const pkg of CS3D_PACKAGES) {
+    if (pkg in deps && deps[pkg] !== targetVersion) {
+      deps[pkg] = targetVersion;
+      count++;
+    }
+  }
+  return count;
+}
+
+const pkgPaths = findWorkspacePackageJsons();
+let totalChanges = 0;
+
+for (const pkgPath of pkgPaths) {
+  const content = readFileSync(pkgPath, 'utf8');
+  const pkg = JSON.parse(content);
+  let changes = 0;
+
+  changes += updateDeps(pkg.dependencies, version);
+  changes += updateDeps(pkg.devDependencies, version);
+  changes += updateDeps(pkg.peerDependencies, version);
+  changes += updateDeps(pkg.resolutions, version);
+
+  if (changes > 0) {
+    // Preserve original formatting (detect indent — restrict to spaces/tabs so
+    // we don't accidentally capture a CRLF newline as part of the indent string)
+    const indent = content.match(/^([ \t]+)/m)?.[1] || '  ';
+    writeFileSync(pkgPath, JSON.stringify(pkg, null, indent) + '\n');
+    const rel = pkgPath.replace(rootDir + '/', '').replace(rootDir + '\\', '');
+    console.log(`  Updated ${rel} (${changes} packages)`);
+    totalChanges += changes;
+  }
+}
+
+console.log(
+  `\nDone: ${totalChanges} version(s) updated to ${version} across ${pkgPaths.length} package files.`
+);
+console.log(
+  'This step changes package.json; the following install must not use a frozen Bun lockfile ' +
+    '(OHIF+CS3D combined “version” CI does: `bun install --config=./bunfig.update-lockfile.toml`). ' +
+    'Other installs stay frozen. Locally after this script, use that bun command and/or ' +
+    '`bun run install:update-lockfile` when you intend to commit lockfile updates.\n'
+);

.scripts/dev.sh

@@ -6,9 +6,9 @@ PROJECT=$1
 if [ -z "$PROJECT" ]
 then
   # Default
-  npx lerna run dev:viewer
+  pnpm --filter @ohif/app run dev:viewer
 else
-  eval "npx lerna run dev:$PROJECT"
+  pnpm --filter @ohif/app run "dev:$PROJECT"
 fi
 
 read -p 'Press [Enter] key to continue...'

.scripts/log-build-context.mjs

@@ -0,0 +1,108 @@
+#!/usr/bin/env node
+/**
+ * Logs build context (OHIF branch/version, CS3D source) for diagnosing build issues on GitHub.
+ * Run from repo root. Used by version.mjs and can be invoked from CI workflows.
+ */
+import { execa } from 'execa';
+import fs from 'fs/promises';
+import path from 'path';
+import { fileURLToPath } from 'url';
+
+const __dirname = path.dirname(fileURLToPath(import.meta.url));
+const REPO_ROOT = path.resolve(__dirname, '..');
+
+function log(msg) {
+  console.log(`[build-context] ${msg}`);
+}
+
+async function detectCs3dSource() {
+  const libsCs3d = path.join(REPO_ROOT, 'libs/@cornerstonejs');
+  const coreInNodeModules = path.join(REPO_ROOT, 'node_modules/@cornerstonejs/core');
+
+  try {
+    const libsExists = await fs.access(libsCs3d).then(() => true).catch(() => false);
+    if (!libsExists) {
+      return { source: 'npm', detail: 'published @cornerstonejs packages (no libs/@cornerstonejs)' };
+    }
+
+    const coreStat = await fs.lstat(coreInNodeModules).catch(() => null);
+    const isSymlink = coreStat?.isSymbolicLink();
+    if (isSymlink) {
+      const target = await fs.readlink(coreInNodeModules);
+      return { source: 'integrated', detail: `linked from libs/@cornerstonejs (→ ${target})` };
+    }
+
+    return { source: 'npm', detail: 'published @cornerstonejs packages (libs exists but not linked)' };
+  } catch {
+    return { source: 'unknown', detail: 'could not detect' };
+  }
+}
+
+async function getCs3dVersion() {
+  try {
+    const corePkg = path.join(REPO_ROOT, 'node_modules/@cornerstonejs/core/package.json');
+    const pkg = JSON.parse(await fs.readFile(corePkg, 'utf-8'));
+    return pkg.version || 'unknown';
+  } catch {
+    return 'unknown';
+  }
+}
+
+async function getCs3dBranchFromLibs() {
+  try {
+    const libsCs3d = path.join(REPO_ROOT, 'libs/@cornerstonejs');
+    const { stdout } = await execa('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {
+      cwd: libsCs3d,
+    });
+    return stdout;
+  } catch {
+    return null;
+  }
+}
+
+async function run() {
+  const inCI = process.env.GITHUB_ACTIONS === 'true';
+  const buildType = inCI ? (process.env.BUILD_TYPE || 'ohif-upstream') : 'local';
+
+  log('═══════════════════════════════════════════════════════════════');
+  log('Build context (for diagnosing GitHub build issues)');
+  log('═══════════════════════════════════════════════════════════════');
+
+  if (inCI) {
+    log(`Build type: ${process.env.BUILD_TYPE || 'ohif-upstream'}`);
+    log(`GitHub repo: ${process.env.GITHUB_REPOSITORY || 'unknown'}`);
+    log(`GitHub ref: ${process.env.GITHUB_REF || 'unknown'}`);
+    log(`GitHub SHA: ${process.env.GITHUB_SHA || 'unknown'}`);
+    log(`Workflow: ${process.env.GITHUB_WORKFLOW || 'unknown'}`);
+  }
+
+  try {
+    const { stdout: branch } = await execa('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {
+      cwd: REPO_ROOT,
+    });
+    const { stdout: sha } = await execa('git', ['rev-parse', '--short', 'HEAD'], {
+      cwd: REPO_ROOT,
+    });
+    log(`OHIF branch: ${branch} (${sha})`);
+  } catch {
+    log('OHIF branch: (not a git repo or error)');
+  }
+
+  const cs3d = await detectCs3dSource();
+  log(`CS3D source: ${cs3d.source} — ${cs3d.detail}`);
+
+  if (cs3d.source === 'integrated') {
+    const branch = await getCs3dBranchFromLibs();
+    if (branch) log(`CS3D branch (libs/@cornerstonejs): ${branch}`);
+  } else {
+    const ver = await getCs3dVersion();
+    log(`CS3D version (@cornerstonejs/core): ${ver}`);
+  }
+
+  log('═══════════════════════════════════════════════════════════════');
+}
+
+run().catch((err) => {
+  console.error('[build-context] Error:', err.message);
+  process.exitCode = 1;
+});

.webpack/resolveConfig.js

@@ -0,0 +1,51 @@
+const path = require('path');
+
+// Shared module-resolution rules (alias + module search paths) used by BOTH
+// build pipelines so they cannot drift apart:
+//   - the webpack/rspack build: webpack.base.js -> webpack.pwa.js, plus every
+//     per-package webpack.prod.js / webpack.dev.js that merges webpack.base.js
+//   - the rsbuild build: rsbuild.config.ts (dev:fast)
+//
+// Plugin aliases (writePluginImportsFile.getPluginResolveAliases) are NOT
+// included here: they depend on pluginConfig.json and are merged in separately
+// by each config.
+//
+// All paths are anchored to this file's location (the repo-root `.webpack/`
+// directory), so the values are identical regardless of which package's build
+// is doing the resolving.
+
+const alias = {
+  // Some extensions import app-level utilities (e.g. history,
+  // preserveQueryParameters) from '@ohif/app'. pnpm's isolated layout does not
+  // expose the top-level app package to those extensions, and adding it as a
+  // workspace dependency would create an app<->default cycle, so we resolve the
+  // bare specifier to the app source here ($ = exact match).
+  '@ohif/app$': path.resolve(__dirname, '../platform/app/src/index.js'),
+  '@': path.resolve(__dirname, '../platform/app/src'),
+  '@components': path.resolve(__dirname, '../platform/app/src/components'),
+  '@hooks': path.resolve(__dirname, '../platform/app/src/hooks'),
+  '@routes': path.resolve(__dirname, '../platform/app/src/routes'),
+  '@state': path.resolve(__dirname, '../platform/app/src/state'),
+};
+
+// Directories to search when resolving modules. The leading bare 'node_modules'
+// preserves the default importer-relative walk-up, which pnpm's isolated layout
+// requires so that transitive deps (e.g. react-remove-scroll -> tslib 2.x)
+// resolve to the sibling copy inside .pnpm/<pkg>/node_modules rather than a
+// hoisted older version.
+const moduleSearchPaths = [
+  'node_modules',
+  path.resolve(__dirname, '../node_modules'),
+  path.resolve(__dirname, '../../../node_modules'),
+  path.resolve(__dirname, '../platform/app/node_modules'),
+  path.resolve(__dirname, '../platform/ui/node_modules'),
+];
+
+// Build the resolve.modules array for a build. `srcDir` is the building
+// package's source root; it is appended last (matching the previous inline
+// behavior in webpack.base.js). Pass nothing to get just the shared paths.
+function getModules(srcDir) {
+  return srcDir ? [...moduleSearchPaths, srcDir] : [...moduleSearchPaths];
+}
+
+module.exports = { alias, moduleSearchPaths, getModules };

.webpack/rules/cssToJavaScript.js

@@ -2,14 +2,14 @@ const autoprefixer = require('autoprefixer');
 const path = require('path');
 const tailwindcss = require('tailwindcss');
 const tailwindConfigPath = path.resolve('../../platform/app/tailwind.config.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
+const rspack = require('@rspack/core');
 const devMode = process.env.NODE_ENV !== 'production';
 
 const cssToJavaScript = {
   test: /\.css$/,
   use: [
     //'style-loader',
-    devMode ? 'style-loader' : MiniCssExtractPlugin.loader,
+    devMode ? 'style-loader' : rspack.CssExtractRspackPlugin.loader,
     { loader: 'css-loader', options: { importLoaders: 1 } },
     {
       loader: 'postcss-loader',

.webpack/rules/transpileJavaScript.js

@@ -4,6 +4,8 @@ function transpileJavaScript(mode) {
   const exclude =
     mode === 'production'
       ? excludeNodeModulesExcept([
+          // Workspace packages (needed for pnpm shamefully-hoist where they resolve through node_modules)
+          '@ohif',
           // 'dicomweb-client',
           // https://github.com/react-dnd/react-dnd/blob/master/babel.config.js
           'react-dnd',

.webpack/webpack.base.js

@@ -4,11 +4,10 @@ const dotenv = require('dotenv');
 const path = require('path');
 const fs = require('fs');
 
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 
 // ~~ PLUGINS
 // const BundleAnalyzerPlugin = require('webpack-bundle-analyzer').BundleAnalyzerPlugin;
-const TerserJSPlugin = require('terser-webpack-plugin');
 
 // ~~ PackageJSON
 // const vtkRules = require('vtk.js/Utilities/config/dependency.js').webpack.core
@@ -18,9 +17,15 @@ const TerserJSPlugin = require('terser-webpack-plugin');
 const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
 const transpileJavaScriptRule = require('./rules/transpileJavaScript.js');
 const cssToJavaScript = require('./rules/cssToJavaScript.js');
+// Module-resolution rules shared with the rsbuild build (see rsbuild.config.ts).
+const resolveConfig = require('./resolveConfig');
 // Only uncomment for old v2 stylus
 // const stylusToJavaScript = require('./rules/stylusToJavaScript.js');
-const ReactRefreshWebpackPlugin = require('@pmmmwh/react-refresh-webpack-plugin');
+let ReactRefreshWebpackPlugin;
+try {
+  const mod = require('@rspack/plugin-react-refresh');
+  ReactRefreshWebpackPlugin = mod.ReactRefreshRspackPlugin || mod.default || mod;
+} catch { ReactRefreshWebpackPlugin = null; }
 
 // ~~ ENV VARS
 const NODE_ENV = process.env.NODE_ENV;
@@ -66,6 +71,12 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
   const config = {
     mode: isProdBuild ? 'production' : 'development',
     devtool: isProdBuild ? 'source-map' : 'cheap-module-source-map',
+    // `rspack serve` (@rspack/cli) auto-enables lazyCompilation for web-only
+    // apps unless the config defines it explicitly. The on-demand proxy chunks
+    // it produces fail to load in the headless cypress/electron e2e run
+    // (ChunkLoadError on cornerstone vendor chunks), so disable it here to match
+    // the rsbuild build (see rsbuild.config.ts `dev.lazyCompilation: false`).
+    lazyCompilation: false,
     entry: ENTRY,
     optimization: {
       // splitChunks: {
@@ -92,9 +103,7 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
       children: false,
       warnings: true,
     },
-    cache: {
+    cache: isProdBuild ? false : { type: 'filesystem' },
-      type: 'filesystem',
-    },
     module: {
       noParse: [/(dicomicc)/],
       rules: [
@@ -168,9 +177,6 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
           },
         },
         cssToJavaScript,
-        // Note: Only uncomment the following if you are using the old style of stylus in v2
-        // Also you need to uncomment this platform/app/.webpack/rules/extractStyleChunks.js
-        // stylusToJavaScript,
         {
           test: /\.wasm/,
           type: 'asset/resource',
@@ -194,27 +200,16 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
     },
     resolve: {
       mainFields: ['module', 'browser', 'main'],
+      // alias and modules are shared with the rsbuild build via ./resolveConfig
+      // so the two pipelines resolve identically.
       alias: {
-        // Viewer project
+        ...resolveConfig.alias,
-        '@': path.resolve(__dirname, '../platform/app/src'),
-        '@components': path.resolve(__dirname, '../platform/app/src/components'),
-        '@hooks': path.resolve(__dirname, '../platform/app/src/hooks'),
-        '@routes': path.resolve(__dirname, '../platform/app/src/routes'),
-        '@state': path.resolve(__dirname, '../platform/app/src/state'),
       },
-      // Which directories to search when resolving modules
+      modules: resolveConfig.getModules(SRC_DIR),
-      modules: [
-        // Modules specific to this package
-        path.resolve(__dirname, '../node_modules'),
-        // Hoisted Yarn Workspace Modules
-        path.resolve(__dirname, '../../../node_modules'),
-        path.resolve(__dirname, '../platform/app/node_modules'),
-        path.resolve(__dirname, '../platform/ui/node_modules'),
-        SRC_DIR,
-      ],
       // Attempt to resolve these extensions in order.
       extensions: ['.js', '.jsx', '.json', '.ts', '.tsx', '*'],
-      // symlinked resources are resolved to their real path, not their symlinked location
+      // Workspace packages use relative imports between sibling packages.
+      // Resolve symlinks to keep those imports anchored at the real package paths.
       symlinks: true,
       fallback: {
         fs: false,
@@ -223,24 +218,34 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
         buffer: require.resolve('buffer'),
       },
     },
+    node: {
+      // Leave __filename / __dirname references alone. The previous 'mock'
+      // value triggers an rspack warning whenever bundled deps reference
+      // __dirname (e.g. Emscripten-compiled cornerstone codecs). Those refs
+      // sit inside `if (ENVIRONMENT_IS_NODE)` branches that never execute in
+      // the browser, so leaving them un-substituted is harmless at runtime.
+      __filename: false,
+      __dirname: false,
+    },
     plugins: [
       new webpack.DefinePlugin(defineValues),
       new webpack.ProvidePlugin({
         Buffer: ['buffer', 'Buffer'],
       }),
-      ...(isProdBuild ? [] : [new ReactRefreshWebpackPlugin({ overlay: false })]),
+      new webpack.IgnorePlugin({
+        resourceRegExp: /^(fs|path)$/,
+        contextRegExp: /@cornerstonejs[\\/]codec-/,
+      }),
+      ...(isProdBuild || IS_COVERAGE || !ReactRefreshWebpackPlugin
+        ? []
+        : [new ReactRefreshWebpackPlugin({ overlay: false })]),
       // Uncomment to generate bundle analyzer
       // new BundleAnalyzerPlugin(),
     ],
   };
 
   if (isProdBuild) {
-    config.optimization.minimizer = [
+    config.optimization.minimizer = [new webpack.SwcJsMinimizerRspackPlugin()];
-      new TerserJSPlugin({
-        parallel: true,
-        terserOptions: {},
-      }),
-    ];
   }
 
   if (isQuickBuild) {

AGENTS.md

@@ -0,0 +1,205 @@
+# AGENTS.md
+
+This file provides guidance to AI coding agents (Claude, Codex, and other LLM tools) when working with code in this repository.
+
+## Project Overview
+
+This is **OHIF** v3  (Open Health Imaging Foundation) - a medical imaging viewer. It's an extensible web imaging platform.
+## Development Commands
+
+### Main Development
+```bash
+# Start development server for all packages
+yarn dev
+```
+
+### Building
+```bash
+# Build all packages for production
+yarn build
+
+# Build specific packages
+cd platform/app && yarn build    # Main viewer app
+```
+
+## Architecture Overview
+
+### Monorepo Structure
+- **`platform/`** - Core OHIF infrastructure
+  - `app/` - Main viewer application (`@ohif/viewer`)
+  - `core/` - Core services and utilities
+  - `ui-next/` - Modern UI component library
+- **`extensions/`** - Modular functionality plugins
+- **`modes/`** - Application workflow configurations
+
+### Key Extension Architecture
+
+**Extension System**: Each extension exports modules (viewports, tools, panels, commands) that the app dynamically loads. Extensions are self-contained with their own webpack builds.
+
+
+**Core Extensions:**
+- `cornerstone/` - Medical image rendering engine
+- `cornerstone-dicom-pmp/` - DICOM PMP support
+- `cornerstone-dicom-seg/` - DICOM Segmentation support
+- `cornerstone-dicom-sr/` - DICOM SR support
+- `dicom-pdf/` - DICOM PDF support
+- `dicom-video/` - DICOM Video support
+- `measurement-tracking/` - Measurement tracking support
+- `default/` - Standard OHIF functionality
+
+### Service-Oriented Design (PUB-SUB)
+
+The app uses a Services Manager pattern with these core services:
+- **Display Set Service**: Manages image series organization
+- **Measurement Service**: Handles annotations and measurements
+- **Hanging Protocol Service**: Controls image layout and display rules
+- **UI Service**: Manages panels, modals, and notifications
+- **Segmentation Service**: AI/ML powered image segmentation, loading segmentations, etc.
+- **Viewport Grid Service**: Manages viewport layout and display rules
+- **Viewport Display Set History Service**: Manages viewport display set history
+- **Viewport Dialog Service**: Manages viewport dialogs
+- **Notification Service**: Manages notifications
+- **Modal Service**: Manages modals
+- **Dialog Service**: Manages dialogs, more general not just viewport dialogs
+- **Customization Service**: Manages customization of the app
+- **Toolbar Service**: Manages the toolbar, viewport action corners, tool states
+- **User Authentication Service**: Manages user authentication, but used only for injecting tokens in dicomweb requests in our context
+- **Panel Service**: Manages side panels
+- **Cornerstone Viewport Service**: Manages the cornerstone viewport, rendering engines, presentation states, more tightly coupled to cornerstone than the other services
+- **Tool Group Service**: Manages tool groups, creating and managing tool groups, etc.
+- **Sync Group Service**: Manages sync groups, syncing zooming, panning, scrolling, etc.
+- **Cornerstone Cache Service**: Manages the cornerstone cache, caching images, etc.
+
+Most of the services utilize a pub sub architecture and extend the pub sub service interace at `pubSubServiceInterface.ts`
+
+### Commands Manager
+
+The Commands Manager tracks named commands (or functions) that are scoped to
+a context. When we attempt to run a command with a given name, we look for it
+in our active contexts, in the order specified.
+If found, we run the command, passing in any application
+or call specific data specified in the command's definition.
+
+You can call `commandsManager.runCommand` to run a command.
+
+### Extension Manager
+
+Aggregates and exposes extension modules throughout the OHIF application, manages data sources, and provides a centralized registry for accessing extension functionality.
+
+### Build System
+
+**Yarn Workspaces**: Optimized monorepo builds with dependency caching
+**Webpack 5**: Module federation for dynamic extension loading
+**Plugin Import System**: Extensions auto-register via `writePluginImportsFile.js`
+
+### Key Technologies
+
+- **React 18 + TypeScript**: UI framework
+- **Cornerstone.js**: Medical image rendering
+- **DICOM**: Medical imaging standard support
+- **ONNX Runtime**: AI model inference (SAM segmentation models)
+- **Zustand**: State management
+- **TailwindCSS**: Styling system
+
+## Development Patterns
+
+### Adding New Tools
+1. Create tool class in `extensions/cornerstone/src/tools/`
+2. Register in tool module's `toolNames.ts`
+3. Add to toolbar via `getToolbarModule.tsx`
+4. Add measurement mapping if needed in `measurementServiceMappings/`
+
+### Creating Extensions
+Extensions must export:
+- `id.js` - Unique extension identifier
+- `index.tsx` - Extension registration
+- Module functions (`getToolbarModule`, `getViewportModule`, etc.)
+
+### Viewport Customization
+Custom viewports extend base Cornerstone viewport:
+- Override render methods for custom overlays
+- Implement measurement tracking
+- Add viewport-specific tools and interactions
+
+### Service Integration
+Register services in extension's `servicesManager.registerService` and access via:
+```javascript
+const { MeasurementService } = servicesManager.services;
+```
+
+### Creating stores
+To create a store, you can make one in your extension's `stores/` directory, and you can follow the example of an existing store such as `useLutPresentationStore.ts` or `useSynchronizersStore.ts`.
+
+### Creating hooks
+To create a hook, you can make one in your extension's `hooks/` directory, and you can follow the example of an existing hook such as `usePatientInfo.tsx`.
+
+### Creating providers
+To create a provider, you can make one in your extension's `providers/` or `contexts/` directory, and you can follow the example of an existing provider such as `ViewportGridProvider.tsx`.
+
+### Adding new icons
+To add a new icon, you can add it to the `icons/` directory, then register the icon using `import { addIcon } from '@ohif/extension-default/src/utils'`
+
+### Creating synchronizers
+You can create custom synchronizers and place them in the `synchronizers/` directory, you can follow the example of `frameViewSynchronizer.ts`
+
+### Utilites
+Any new utilites should be placed in the `utils/` directory, and you can follow the example of `formatPN.ts`
+
+### Commands
+Commands are created in the commandsModule of the extension, for example the cornerstone extension has `commandsModule.tsx`, sometimes its also named `getCommandsModule.tsx.`
+
+### Overriding OHIF Components
+
+To override an OHIF component, you can create a new component in your extension's `components/` directory, then import it instead of the original ui-next component.
+
+### Mode layout
+
+The layoutTemplate is a function that returns a layout object, you can follow the example of `longitudinal/src/index.ts`. This would be helpful when you need to override a component as you can know where to look for the original component.
+
+### Pub Sub
+Always prioritrize pub sub, by calling a services subscribe over useEffects as it's more reliable, for example
+
+```ts
+  useEffect(() => {
+    const subscriptions = [
+      cornerstoneViewportService.subscribe(EVENTS.VIEWPORT_DATA_CHANGED, handleViewportDataChanged),
+      syncGroupService.subscribe(EVENTS.VIEWPORT_REMOVED, onHotKeyRemoval),
+      syncGroupService.subscribe(EVENTS.VIEWPORT_ADDED, onHotKeyAddition),
+    ];
+
+    return () => {
+      subscriptions.forEach(({ unsubscribe }) => unsubscribe());
+    };
+  }, []);
+```
+
+### Never modify core architecture
+Do not modify the core and always find a way to implement the solution via the extensions and modes, only modify core as a last resort if all other fail or there's an architectural constraint.
+
+## Skills
+
+The `ohif-test-agent` skill (Playwright E2E test guidance) lives at `.agents/skills/ohif-test-agent/`.
+
+## Configuration
+
+### Plugin Configuration
+Extensions are auto-discovered via `pluginConfig.json` and dynamically imported during build.
+
+## Medical Imaging Specifics
+
+### DICOM Support
+- Multi-format: CT, MRI, X-Ray, Mammography, Ultrasound
+- SOP Class handlers for specialized DICOM types (RT, SEG, SR)
+- DICOMweb protocol for web-based image retrieval
+
+### Hanging Protocols
+Define how images are arranged and displayed:
+- Located in `hps/` directories
+- JSON configuration with viewport rules
+- Support for priors comparison and multi-monitor layouts
+
+### Measurement Tools
+- Cornerstone Tools integration for annotations
+- Bidirectional measurements, polylines, annotations
+- Export capabilities (DICOM SR, CSV reports)
+- AI-assisted measurements via ONNX models

CHANGELOG.md

@@ -3,6 +3,778 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+
+### Bug Fixes
+
+* ohif tests to run with cornerstone 3d 5.0 ([#6043](https://github.com/OHIF/Viewers/issues/6043)) ([6dd150d](https://github.com/OHIF/Viewers/commit/6dd150d401ad73d60632a23378b7dfd4b5142690))
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+
+### Bug Fixes
+
+* **security:** Patch axios vulnerabilities. ([#6063](https://github.com/OHIF/Viewers/issues/6063)) ([99c6154](https://github.com/OHIF/Viewers/commit/99c615434309b113aed9ac9a977419eeae0528cb))
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+
+### Features
+
+* **WorkList:** New Study List (WorkList based on ui-next); old study list renamed to LegacyWorklist ([#6005](https://github.com/OHIF/Viewers/issues/6005)) ([daae4c1](https://github.com/OHIF/Viewers/commit/daae4c144e7cb80bbee7c05d9fceef8b332ed2a0))
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+
+### Bug Fixes
+
+* **security:** Add tmp as a resolution to fix security vulnerability. ([#6044](https://github.com/OHIF/Viewers/issues/6044)) ([bdcafc1](https://github.com/OHIF/Viewers/commit/bdcafc12de5e4f73a1a96cab9c0830d49315c044))
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+
+### Bug Fixes
+
+* **segmentation:** restore navigation for duplicated contour segments ([#6038](https://github.com/OHIF/Viewers/issues/6038)) ([0c1ca6b](https://github.com/OHIF/Viewers/commit/0c1ca6b04a6c1aef478c7a7d9f360f9b9c50f188))
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+
+### Features
+
+* **tests:** Add tests for duplicating contour segments ([#6002](https://github.com/OHIF/Viewers/issues/6002)) ([2258c79](https://github.com/OHIF/Viewers/commit/2258c7957a18ed0f1a75d2bd5d379006797b2882))
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+
+### Bug Fixes
+
+* **seg:** prevent viewport orientation change when loading SEG in manual grid layout ([#6021](https://github.com/OHIF/Viewers/issues/6021)) ([95251ab](https://github.com/OHIF/Viewers/commit/95251ab6709934e4ef59931379f8d9d7629f87b2))
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+
+### Bug Fixes
+
+* **measurements:** read displayName in SplineROI and PlanarFreehandROI reports ([#5908](https://github.com/OHIF/Viewers/issues/5908)) ([27af682](https://github.com/OHIF/Viewers/commit/27af6821b56f2c5be3a5d4ce38d05be6fbce68f4))
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+
+### Bug Fixes
+
+* **segmentation:** remove thresholdRange label in double-range tool settings ([#5931](https://github.com/OHIF/Viewers/issues/5931)) ([527cfb0](https://github.com/OHIF/Viewers/commit/527cfb0ae8c615aeaddbc7f16892ba4460a5b596))
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+
+### Bug Fixes
+
+* **security:** Update various dependencies to fix security vulnerabilities. ([#6023](https://github.com/OHIF/Viewers/issues/6023)) ([55b46f3](https://github.com/OHIF/Viewers/commit/55b46f39c65a183978a44a61fb322685134f3bd6))
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+
+### Features
+
+* **llm:** add instructions md file for claude and other LLM tools ([#6017](https://github.com/OHIF/Viewers/issues/6017)) ([f231eff](https://github.com/OHIF/Viewers/commit/f231eff5980495c9f3ac0bd907a03388d06c5b90))
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+
+### Bug Fixes
+
+* **measurement-tracking:** restore tracked state on undo after Delete all ([#5994](https://github.com/OHIF/Viewers/issues/5994)) ([397aa4d](https://github.com/OHIF/Viewers/commit/397aa4d0e361e95dcbd83e0557a9cd84c0b8440a))
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+
+### Bug Fixes
+
+* remove waitForVolumeLoad from main toolbar page object ([#6004](https://github.com/OHIF/Viewers/issues/6004)) ([37e19f7](https://github.com/OHIF/Viewers/commit/37e19f734a675a95cedc8a8acc3980816a489574))
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+
+### Bug Fixes
+
+* **security:** Patch axios security vulnerabilities. ([#5998](https://github.com/OHIF/Viewers/issues/5998)) ([5e624f1](https://github.com/OHIF/Viewers/commit/5e624f13870cdb63300b82285b46d4b21b9d47c3))
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+
+### Bug Fixes
+
+* **ToolGroupService:** Centralize tool binding persistence and provide API to add and remove persisted bindings. ([#5989](https://github.com/OHIF/Viewers/issues/5989)) ([979d619](https://github.com/OHIF/Viewers/commit/979d619f7ccb426beb75d59721b01c98175d5241))
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+
+### Features
+
+* **ui-next:** Adds toggle state for ToolButton and Crosshair example ([#5914](https://github.com/OHIF/Viewers/issues/5914)) ([691e267](https://github.com/OHIF/Viewers/commit/691e26731f4f3b3957fe81fc051b09c972696cf6))
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+
+### Bug Fixes
+
+* **config url:** Hardening fetch options. ([#5985](https://github.com/OHIF/Viewers/issues/5985)) ([468e573](https://github.com/OHIF/Viewers/commit/468e5734a9ab02516430cc0dab5d7f2106dea950))
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+
+### Bug Fixes
+
+* **seg:** prevent segmentations from spreading to all viewports before hydration confirmation in 3D four-up ([#5967](https://github.com/OHIF/Viewers/issues/5967)) ([f8ccf9f](https://github.com/OHIF/Viewers/commit/f8ccf9ff2ea9ab7c38bd427514a8ae87902822a3))
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+
+### Bug Fixes
+
+* **security:** refine dynamic config URL trust policy and document trusted-origin behavior ([#5973](https://github.com/OHIF/Viewers/issues/5973)) ([f3cca21](https://github.com/OHIF/Viewers/commit/f3cca21e49729fbf4bab85aa1de64b9dcfebd0ce))
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+
+### Bug Fixes
+
+* **security:** Patch protobufjs for CVE-2026-41242. ([#5974](https://github.com/OHIF/Viewers/issues/5974)) ([1fc97fe](https://github.com/OHIF/Viewers/commit/1fc97fea43cc5e6689bd0076b77a278c67252af7))
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+
+### Features
+
+* **slice scrollbar:** Integrate ViewportSliceProgressScrollbar with customizations and docs ([#5960](https://github.com/OHIF/Viewers/issues/5960)) ([8fc0dc1](https://github.com/OHIF/Viewers/commit/8fc0dc16e97f3262fdac902ecf2d7c20cb8f78cc))
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+
+### Bug Fixes
+
+* **configuration:** Harden dynamic datasource URL trust boundaries and credential handling. ([#5963](https://github.com/OHIF/Viewers/issues/5963)) ([eede569](https://github.com/OHIF/Viewers/commit/eede569a88ed6a3177bbdea8552dfb93ca13cac5))
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+
+### Bug Fixes
+
+* Use newer ONNX version and load without errors ([#5854](https://github.com/OHIF/Viewers/issues/5854)) ([cc5dc20](https://github.com/OHIF/Viewers/commit/cc5dc201649bcbfb4cfad21141dbd56000d30f53)), closes [#5875](https://github.com/OHIF/Viewers/issues/5875) [#5884](https://github.com/OHIF/Viewers/issues/5884) [#5886](https://github.com/OHIF/Viewers/issues/5886) [#5893](https://github.com/OHIF/Viewers/issues/5893) [#5874](https://github.com/OHIF/Viewers/issues/5874) [#5865](https://github.com/OHIF/Viewers/issues/5865)
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+
+### Bug Fixes
+
+* Enhance multiframe instance handling and improve instance valida… ([#5956](https://github.com/OHIF/Viewers/issues/5956)) ([f5a66b9](https://github.com/OHIF/Viewers/commit/f5a66b9eea236cd3291eac857208d7465516c89a))
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+
+### Bug Fixes
+
+* A couple of changes to enable cs3d integration build ([#5944](https://github.com/OHIF/Viewers/issues/5944)) ([f6bbd5c](https://github.com/OHIF/Viewers/commit/f6bbd5c779e4692dc47c93327a890661b8dcc174))
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+
+### Bug Fixes
+
+* ignore auth in git ([#5955](https://github.com/OHIF/Viewers/issues/5955)) ([961eea1](https://github.com/OHIF/Viewers/commit/961eea1c39c37a940c1707c3dfafcede5f4af994))
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+
+### Bug Fixes
+
+* **cornerstone:** read FrameOfReferenceUID from display set in viewport service ([#5950](https://github.com/OHIF/Viewers/issues/5950)) ([d219171](https://github.com/OHIF/Viewers/commit/d219171e25caf5a7c575080f63819d6f4fe45016))
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+
+### Reverts
+
+* rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID ([#5943](https://github.com/OHIF/Viewers/issues/5943)) ([0e933c2](https://github.com/OHIF/Viewers/commit/0e933c256e07b7cda35ed2ba3cfb1ab35d895d57))
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+
+### Bug Fixes
+
+* **defaultRouteInit:** pass sorted display sets to hanging protocol for deterministic viewport order ([#5933](https://github.com/OHIF/Viewers/issues/5933)) ([68b10d3](https://github.com/OHIF/Viewers/commit/68b10d365a72d656c83a1c61624dcbd245fff5db))
+
+
+### Features
+
+* **component:** Adds SmartScrollbar to ui-next - OHIF-2558 ([#5924](https://github.com/OHIF/Viewers/issues/5924)) ([91a8715](https://github.com/OHIF/Viewers/commit/91a8715795c1501b271f10b361382331eb836bf9))
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+
+### Bug Fixes
+
+* **security:** Update yarn.lock that was missed in PR [#5936](https://github.com/OHIF/Viewers/issues/5936). ([#5940](https://github.com/OHIF/Viewers/issues/5940)) ([84ddf78](https://github.com/OHIF/Viewers/commit/84ddf78c879a7cb1aa62c3aaef4428adf67065da))
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+
+### Bug Fixes
+
+* **security:** update dependencies to fix security vulnerabilities ([#5936](https://github.com/OHIF/Viewers/issues/5936)) ([5358a39](https://github.com/OHIF/Viewers/commit/5358a3985a1fa87eb1e3e7493dd61254f790b6d8))
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+
+### Bug Fixes
+
+* **segmentation:** restrict overlay segmentation menu to same frame of reference as viewport background display set  ([#5900](https://github.com/OHIF/Viewers/issues/5900)) ([b9029ef](https://github.com/OHIF/Viewers/commit/b9029ef6f8d63a0e36ec929310c1c5ad3f563ef8))
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+
+### Bug Fixes
+
+* **measurement:** Restore viewport interactivity when deleting in-progress Spline or Livewire measurement ([#5905](https://github.com/OHIF/Viewers/issues/5905)) ([7929f08](https://github.com/OHIF/Viewers/commit/7929f0898f1bf882682a912b1c32d93d0944726f))
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+
+### Bug Fixes
+
+* prevent black viewport when navigating series with client-created segmentation ([#5919](https://github.com/OHIF/Viewers/issues/5919)) ([e66fb5a](https://github.com/OHIF/Viewers/commit/e66fb5a2b8c93a60ea20d315f73def7a02ea205f))
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+
+### Bug Fixes
+
+* **SR:** Added support for spline and live wire SR items. ([#5870](https://github.com/OHIF/Viewers/issues/5870)) ([1d4802c](https://github.com/OHIF/Viewers/commit/1d4802c2a38dd75dca7afca87913e100453c9135))
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+
+### Features
+
+* Add combined build ([#5895](https://github.com/OHIF/Viewers/issues/5895)) ([1df671e](https://github.com/OHIF/Viewers/commit/1df671e9ab67d43f98bf09f6838ddc0a5f220277))
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+
+### Bug Fixes
+
+* **sr-hydration:** enable hydration and arrow navigation for 3D SR measurements ([#5887](https://github.com/OHIF/Viewers/issues/5887)) ([7a38903](https://github.com/OHIF/Viewers/commit/7a38903b1977b1cf0f3a0ba8a4a823fac5e8fdeb))
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+
+### Bug Fixes
+
+* **security:** Bump flattened version to address CVE-2026-32141. ([#5897](https://github.com/OHIF/Viewers/issues/5897)) ([d8d376e](https://github.com/OHIF/Viewers/commit/d8d376edaf9c2b7af237182657e3e2203cca5abb))
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+
+### Bug Fixes
+
+* **window level:** The window level value is not displayed by default on all the viewports when selecting common/custom layout and TMTV. ([#5865](https://github.com/OHIF/Viewers/issues/5865)) ([fe1ecfe](https://github.com/OHIF/Viewers/commit/fe1ecfe0cc5d1bcf82686d821f356da8936a8c4b))
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+
+### Bug Fixes
+
+* **segmentation:** Display "No description S:{series number} {modality}" for segmentations with no label. ([#5874](https://github.com/OHIF/Viewers/issues/5874)) ([7b5d0ce](https://github.com/OHIF/Viewers/commit/7b5d0ce40e5422ccfce6091ac3d7559586cbe57e))
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+
+### Bug Fixes
+
+* **security:** Bump tar version to address CVE-2026-31802. ([#5893](https://github.com/OHIF/Viewers/issues/5893)) ([d015b2e](https://github.com/OHIF/Viewers/commit/d015b2e32a418042034c4f557c5a36499c72f702))
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+
+### Bug Fixes
+
+* Modalities in study list should select starts with as primary ([#5886](https://github.com/OHIF/Viewers/issues/5886)) ([b83e978](https://github.com/OHIF/Viewers/commit/b83e978df8c9ffda3759378318267b8d0020653c))
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+
+### Bug Fixes
+
+* **Threshold tool:** Threshold tool no longer becomes deselected when the Dynamic option is selected ([#5884](https://github.com/OHIF/Viewers/issues/5884)) ([889026f](https://github.com/OHIF/Viewers/commit/889026f8a9c20cd21c31b4a02128afd5f057b14b))
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+
+### Bug Fixes
+
+* **seg hydration:** auto-hydrate RT struct on second load with disableConfirmationPrompts ([#5875](https://github.com/OHIF/Viewers/issues/5875)) ([6f773f9](https://github.com/OHIF/Viewers/commit/6f773f997214c388409f3af3e9fc0e5b84debc10))
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+
+### Bug Fixes
+
+* **security:** Bump svgo and tar to fix vulnerabilities. ([#5877](https://github.com/OHIF/Viewers/issues/5877)) ([61a1fcc](https://github.com/OHIF/Viewers/commit/61a1fccd7d47965831a6c80357219eed979ce4d6))
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+
+### Features
+
+* **ecg:** add DICOM ECG waveform extension ([#5856](https://github.com/OHIF/Viewers/issues/5856)) ([70f76ae](https://github.com/OHIF/Viewers/commit/70f76aeba1b27f8e4de5ec73a7b831428e38e3d2))
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+
+### Bug Fixes
+
+* **microscopy:** rename measurement in microscopy mode ([#5866](https://github.com/OHIF/Viewers/issues/5866)) ([2358a73](https://github.com/OHIF/Viewers/commit/2358a73c3cd24953430064480fb9e66bfe36ea69))
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+
+### Bug Fixes
+
+* **segmentation:** segment bidirectional tool error and show toast notification when no segment is drawn ([#5861](https://github.com/OHIF/Viewers/issues/5861)) ([7e10830](https://github.com/OHIF/Viewers/commit/7e10830d5802e22bda4df6a3f8008e9a414b4cd4))
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+
+### Bug Fixes
+
+* **security:** Address various security vulnerabilities. ([#5869](https://github.com/OHIF/Viewers/issues/5869)) ([be8e266](https://github.com/OHIF/Viewers/commit/be8e266a80f13d03ce9dc4a21a0227d3e1bc36ac))
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+
+### Bug Fixes
+
+* Update CS3D 4.18.2 ([#5837](https://github.com/OHIF/Viewers/issues/5837)) ([5370b93](https://github.com/OHIF/Viewers/commit/5370b9382e7bfddeadd69bab9e653f5f997a6e19))
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+
+### Bug Fixes
+
+* prevent viewer crash when opening DICOM Tag Browser from empty viewport  ([#5827](https://github.com/OHIF/Viewers/issues/5827)) ([d11d6d4](https://github.com/OHIF/Viewers/commit/d11d6d401bc92a3870ec1089d97235b01a6b27c3))
+* **ui-next:** Add validation for opacity and border inputs in the segmentation panel - OHIF-2332 ([#5819](https://github.com/OHIF/Viewers/issues/5819)) ([a8f7099](https://github.com/OHIF/Viewers/commit/a8f709982f16983a11c780e696521df5aa05b604))
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+
+### Bug Fixes
+
+* palette color 8 encoded 16 ([#5823](https://github.com/OHIF/Viewers/issues/5823)) ([eeca1f7](https://github.com/OHIF/Viewers/commit/eeca1f7a7b529d1700f5d281a6fd98074547ffe9)), closes [#5813](https://github.com/OHIF/Viewers/issues/5813)
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package ohif-monorepo-root
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+
+### Bug Fixes
+
+* **RTStruct:** RTSTRUCT contours rendered on first slice for multi-frame images without IPP ([#5811](https://github.com/OHIF/Viewers/issues/5811)) ([b5573ca](https://github.com/OHIF/Viewers/commit/b5573caaa65d0d7ff3e83df0ec70b4aa7ea898ca))
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+
+### Bug Fixes
+
+* Published version should match ([#5813](https://github.com/OHIF/Viewers/issues/5813)) ([d359a3b](https://github.com/OHIF/Viewers/commit/d359a3b784227b248c5b09548db363c7f8adbcb8))
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+
+### Bug Fixes
+
+* **security:**  CVE-2026-27212 patched. Various dependency updates as a result of CVE-2026-26996. ([#5830](https://github.com/OHIF/Viewers/issues/5830)) ([2722960](https://github.com/OHIF/Viewers/commit/27229609cda3162e37573418ef82ca5d4e365075))
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+
+### Bug Fixes
+
+* **segmentation overlay:** update viewport ds list upon seg delete - OHIF-2425 ([#5729](https://github.com/OHIF/Viewers/issues/5729)) ([b353541](https://github.com/OHIF/Viewers/commit/b35354120a01d89b27844f967c32c052bba8b096))
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+
+### Bug Fixes
+
+* Add copy to clipboard option for capture ([#5720](https://github.com/OHIF/Viewers/issues/5720)) ([53c67f3](https://github.com/OHIF/Viewers/commit/53c67f361234a0b4160c1b11fafcb143a0723336))
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+
+### Bug Fixes
+
+* **security:** Bump tar to 7.5.9 and lerna to 9.0.4 to fix CVE-2026-26960. ([#5824](https://github.com/OHIF/Viewers/issues/5824)) ([3d59c0d](https://github.com/OHIF/Viewers/commit/3d59c0d9d3783336eaa8d37cfc0172818942bf00))
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 

Dockerfile

@@ -20,49 +20,33 @@
 #
 
 
-# syntax=docker/dockerfile:1.7-labs
-# This dockerfile is used to publish the `ohif/app` image on dockerhub.
-#
-# It's a good example of how to build our static application and package it
-# with a web server capable of hosting it as static content.
-#
-# docker build
-# --------------
-# If you would like to use this dockerfile to build and tag an image, make sure
-# you set the context to the project's root directory:
-# https://docs.docker.com/engine/reference/commandline/build/
-#
-#
-# SUMMARY
-# --------------
-# This dockerfile is used as an input for a second stage to make things run faster.
-#
-
-
 # Stage 1: Build the application
 # docker build -t ohif/viewer:latest .
 # Copy Files
-FROM node:20.18.1-slim as builder
+FROM node:24.15.0-slim as builder
 
-RUN apt-get update && apt-get install -y build-essential python3
+RUN apt-get update && apt-get install -y --no-install-recommends build-essential python3 \
+    && rm -rf /var/lib/apt/lists/*
 
+RUN npm install -g pnpm@11
 
 RUN mkdir /usr/src/app
 WORKDIR /usr/src/app
-RUN npm install -g bun@1.2.23
-RUN npm install -g lerna@7.4.2
 ENV PATH=/usr/src/app/node_modules/.bin:$PATH
 
-# Do an initial install and then a final install
+# Copy package manifests for install caching. preinstall.js is included because
-COPY package.json yarn.lock preinstall.js lerna.json ./
+# the root package.json's "preinstall" lifecycle script (node preinstall.js)
-COPY --parents ./addOns/package.json ./addOns/*/*/package.json ./extensions/*/package.json ./modes/*/package.json ./platform/*/package.json ./
+# runs during `pnpm install` below -- before the full source is copied -- so the
-# Run the install before copying the rest of the files
+# script file must already be present or install fails with MODULE_NOT_FOUND.
-
+COPY package.json pnpm-lock.yaml pnpm-workspace.yaml .npmrc preinstall.js ./
-RUN bun pm cache rm
+COPY --parents ./extensions/*/package.json ./modes/*/package.json ./platform/*/package.json ./
-RUN bun install
+# Run the install before copying the rest of the files.
-RUN bun add ajv@8.12.0
+# Keep --no-frozen-lockfile here (unlike CI): .dockerignore excludes
+# platform/docs, so the lockfile's docs importer has no manifest in the build
+# context and a frozen install would fail. pnpm reconciles (drops docs) instead.
+RUN pnpm install --no-frozen-lockfile
 # Copy the local directory
-COPY --link --exclude=yarn.lock --exclude=package.json --exclude=Dockerfile . .
+COPY --link --exclude=pnpm-lock.yaml --exclude=package.json --exclude=Dockerfile . .
 
 # Build here
 # After install it should hopefully be stable until the local directory changes
@@ -72,14 +56,14 @@ ARG APP_CONFIG=config/default.js
 ARG PUBLIC_URL=/
 ENV PUBLIC_URL=${PUBLIC_URL}
 
-RUN bun run show:config
+RUN pnpm run show:config
-RUN bun run build
+RUN pnpm run build
 
 # Precompress files
 RUN chmod u+x .docker/compressDist.sh
 RUN ./.docker/compressDist.sh
 
-# Stage 3: Bundle the built application into a Docker container
+# Stage 2: Bundle the built application into a Docker container
 # which runs Nginx using Alpine Linux
 FROM nginxinc/nginx-unprivileged:1.27-alpine as final
 #RUN apk add --no-cache bash

README.md

@@ -49,6 +49,7 @@ provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF
 | <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-4d.webp?raw=true" alt="4D" width="350"/> | 4D  | [Demo](https://viewer.ohif.org/dynamic-volume?StudyInstanceUIDs=2.25.232704420736447710317909004159492840763) |
 | <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-video.webp?raw=true" alt="VIDEO" width="350"/> | Video  | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.96975534054447904995905761963464388233) |
 | <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/microscopy.webp?raw=true" alt="microscopy" width="350"/> | Slide Microscopy  | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.141277760791347900862109212450152067508) |
+| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-ecg.webp?raw=true" alt="ECG" width="350"/> | ECG Waveform  | [Demo](https://viewer-dev.ohif.org/viewer?StudyInstanceUIDs=2.25.209974489360710696739324151261716440238) |
 
 ## About
 
@@ -104,7 +105,6 @@ For commercial support, academic collaborations, and answers to common
 questions; please use [Get Support](https://ohif.org/get-support/) to contact
 us.
 
-
 ## Developing
 
 ### Branches
@@ -168,6 +168,64 @@ yarn config set workspaces-experimental true
 yarn install --frozen-lockfile
 ```
 
+### Cornerstone3D Integration Testing
+
+OHIF's Playwright end-to-end tests can run against a **CS3D branch** or a
+**published CS3D version**, allowing changes that span both repositories to be
+validated together before merging.
+
+#### Setting up an integration build
+
+1. Add the **`ohif-integration`** label to your OHIF pull request.
+2. In the PR body, add a line specifying the CS3D ref:
+   ```
+   CS3D_REF: feat/my-feature
+   ```
+   - **Version ref** (e.g. `4.19+`, `4.18.2`) — the workflow resolves it to an
+     exact published version and swaps the CS3D dependency via npm.
+   - **Branch ref** (e.g. `main`, `cornerstonejs:feat/foo`) — the workflow
+     clones the branch, builds CS3D from source with `bun run build:esm`, and
+     symlinks the built packages into OHIF's `node_modules`.
+   - For forks, use the `<owner>:<branch>` format
+     (e.g. `myGithubUser:feat/foo`).
+   - If no `CS3D_REF` is specified, the default is `4.19+`.
+3. The workflow can also be triggered manually via **workflow_dispatch** with a
+   `cs3d_ref` input.
+
+#### What happens in CI
+
+The [Playwright workflow](.github/workflows/playwright.yml) runs two jobs:
+
+| Job | Purpose |
+|-----|---------|
+| **Playwright Tests** | Builds OHIF (with CS3D linked or version-swapped), runs the full Playwright suite, uploads test results and coverage, and deploys a Netlify preview when `ohif-integration` is active. |
+| **CS3D Branch Merge Guard** | A lightweight check that **fails** when the `ohif-integration` label is present and `CS3D_REF` points to a branch (not a version). This prevents merging while still letting the Playwright tests show green so you can see whether the code actually works. |
+
+#### Testing changes that span both repos
+
+If a feature requires changes in both Cornerstone3D and OHIF:
+
+1. Create your feature branch in CS3D and push it.
+2. Create a matching branch in OHIF.
+3. Add the `ohif-integration` label to the OHIF pull request.
+4. In the PR body, add: `CS3D_REF: <your-cs3d-branch>`.
+5. Playwright tests will build CS3D from source, link it, and run the full
+   suite. The merge guard will block merge until you switch to a published
+   version — but you can see the test results and the preview deploy while
+   iterating.
+6. Once the CS3D side is merged and published, update the PR body to reference
+   the published version (e.g. `CS3D_REF: 4.19+`). The tests will run against
+   the registry version and the merge guard will pass.
+
+#### Preview deploys
+
+When `ohif-integration` is active, the Playwright workflow also builds the OHIF
+viewer and deploys it to Netlify as a preview. This gives you a live URL to
+manually test the combined CS3D + OHIF changes without running anything locally.
+
+For details on linking CS3D locally for development, see the
+[Cornerstone3D README](libs/@cornerstonejs/README.md#local-development-linking--unlinking).
+
 ## Commands
 
 These commands are available from the root directory. Each project directory
@@ -186,6 +244,32 @@ also supports a number of commands that can be found in their respective
 \* - For more information on different builds, check out our [Deploy
 Docs][deployment-docs]
 
+### Which config each command uses
+
+The dev server and the production build select a different default
+[configuration file][config-file] when `APP_CONFIG` is not set explicitly:
+
+| Command                         | Default config       | Data sources | `?customization=` |
+| ------------------------------- | -------------------- | ------------ | ----------------- |
+| `dev`, `dev:fast`, `start`      | `config/dev.js`      | Full set     | Enabled           |
+| `build`                         | `config/default.js`  | One demo source | Disabled       |
+
+- **`config/dev.js`** is the full-featured local-development config: every data
+  source is enabled, the `?customization=` URL feature is turned on (via
+  `customizationUrlPrefixes`), and it is kept at parity with the public demo
+  (`config/netlify.js`) so customizations behave locally the same way they do on
+  the demo.
+- **`config/netlify.js`** is the public demo / Netlify deploy config
+  (`build:viewer:ci`), with the same full data-source set and `?customization=`
+  enabled.
+- **`config/default.js`** is a locked-down baseline and is now **only** the
+  default for a plain production build (`build` with no `APP_CONFIG`): a single
+  read-only demo data source and `?customization=` off.
+
+Any explicit `APP_CONFIG` overrides the default, e.g.
+`APP_CONFIG=config/default.js pnpm run dev` or
+`APP_CONFIG=config/netlify.js pnpm run build`.
+
 ## Project
 
 The OHIF Medical Image Viewing Platform is maintained as a
@@ -313,6 +397,7 @@ MIT © [OHIF](https://github.com/OHIF)
 [ohif-architecture]: https://docs.ohif.org/architecture/index.html
 [ohif-extensions]: https://docs.ohif.org/architecture/index.html
 [deployment-docs]: https://docs.ohif.org/deployment/
+[config-file]: https://docs.ohif.org/configuration/configurationFiles
 [react-url]: https://reactjs.org/
 [pwa-url]: https://developers.google.com/web/progressive-web-apps/
 [ohif-viewer-url]: https://www.npmjs.com/package/@ohif/app

addOns/README.md

@@ -1,3 +0,0 @@
-# External Dependencies
-
-This module contains optional dependencies and external dependencies for including in OHIF, such as the DICOM Microscopy Viewer component.  

addOns/externals/devDependencies/package.json

@@ -1,95 +0,0 @@
-{
-  "name": "@externals/devDependencies",
-  "description": "External dev dependencies - put dev build dependencies here",
-  "version": "3.13.0-beta.15",
-  "license": "MIT",
-  "private": true,
-  "engines": {
-    "node": ">=12",
-    "yarn": ">=1.19.1"
-  },
-  "dependencies": {
-    "@babel/runtime": "7.28.2",
-    "@kitware/vtk.js": "34.15.1",
-    "clsx": "2.1.1",
-    "core-js": "3.45.1",
-    "moment": "2.30.1"
-  },
-  "peerDependencies": {
-    "react": "18.3.1",
-    "react-dom": "18.3.1"
-  },
-  "devDependencies": {
-    "@babel/eslint-parser": "7.28.0",
-    "@pmmmwh/react-refresh-webpack-plugin": "0.5.17",
-    "@rsbuild/core": "1.5.1",
-    "@rsbuild/plugin-node-polyfill": "1.4.2",
-    "@rsbuild/plugin-react": "1.4.0",
-    "@svgr/webpack": "8.1.0",
-    "@swc/helpers": "0.5.17",
-    "@types/jest": "27.5.2",
-    "@typescript-eslint/eslint-plugin": "6.21.0",
-    "@typescript-eslint/parser": "6.21.0",
-    "autoprefixer": "10.4.21",
-    "babel-loader": "8.4.1",
-    "babel-plugin-module-resolver": "5.0.2",
-    "clean-webpack-plugin": "3.0.0",
-    "copy-webpack-plugin": "9.1.0",
-    "cross-env": "7.0.3",
-    "css-loader": "6.11.0",
-    "dotenv": "8.6.0",
-    "eslint": "8.57.1",
-    "eslint-config-prettier": "7.2.0",
-    "eslint-config-react-app": "6.0.0",
-    "eslint-plugin-cypress": "2.15.2",
-    "eslint-plugin-flowtype": "7.0.0",
-    "eslint-plugin-import": "2.32.0",
-    "eslint-plugin-jsx-a11y": "6.10.2",
-    "eslint-plugin-node": "11.1.0",
-    "eslint-plugin-prettier": "5.5.1",
-    "eslint-plugin-promise": "5.2.0",
-    "eslint-plugin-react": "7.37.5",
-    "eslint-plugin-react-hooks": "4.6.2",
-    "eslint-plugin-tsdoc": "0.2.17",
-    "eslint-webpack-plugin": "2.7.0",
-    "execa": "8.0.1",
-    "extract-css-chunks-webpack-plugin": "4.10.0",
-    "html-webpack-plugin": "5.6.3",
-    "husky": "3.1.0",
-    "jest": "29.7.0",
-    "jest-canvas-mock": "2.5.2",
-    "jest-environment-jsdom": "29.7.0",
-    "jest-junit": "6.4.0",
-    "lerna": "7.4.2",
-    "lint-staged": "9.5.0",
-    "mini-css-extract-plugin": "2.9.2",
-    "optimize-css-assets-webpack-plugin": "6.0.1",
-    "postcss": "8.5.6",
-    "postcss-import": "14.1.0",
-    "postcss-loader": "6.2.1",
-    "postcss-preset-env": "7.8.3",
-    "prettier": "3.6.2",
-    "prettier-plugin-tailwindcss": "0.6.9",
-    "react-refresh": "0.14.2",
-    "semver": "7.7.2",
-    "serve": "14.2.4",
-    "shader-loader": "1.3.1",
-    "shx": "0.3.4",
-    "source-map-loader": "4.0.2",
-    "style-loader": "1.3.0",
-    "terser-webpack-plugin": "5.3.14",
-    "typescript": "5.5.4",
-    "unused-webpack-plugin": "2.4.0",
-    "webpack": "5.105.0",
-    "webpack-bundle-analyzer": "4.10.2",
-    "webpack-cli": "5.1.4",
-    "webpack-dev-server": "5.2.2",
-    "webpack-hot-middleware": "2.26.1",
-    "webpack-merge": "5.10.0",
-    "workbox-webpack-plugin": "6.6.1",
-    "worker-loader": "3.0.8"
-  },
-  "scripts": {
-    "build": "Included as direct dependency"
-  }
-}

addOns/externals/dicom-microscopy-viewer/package.json

@@ -1,9 +0,0 @@
-{
-  "name": "@externals/dicom-microscopy-viewer",
-  "description": "External reference to dicom-microscopy-viewer",
-  "version": "3.13.0-beta.15",
-  "license": "MIT",
-  "dependencies": {
-    "dicom-microscopy-viewer": "0.48.17"
-  }
-}

addOns/package.json

@@ -1,50 +0,0 @@
-{
-  "name": "ohif-monorepo-root",
-  "private": true,
-  "packageManager": "yarn@1.22.22",
-  "workspaces": {
-    "packages": [
-      "../platform/i18n",
-      "../platform/core",
-      "../platform/ui",
-      "../platform/ui-next",
-      "../platform/app",
-      "../extensions/*",
-      "../modes/*",
-      "../addOns/externals/*"
-    ],
-    "nohoist": [
-      "**/html-minifier-terser"
-    ]
-  },
-  "scripts": {
-    "preinstall": "cd .. && node preinstall.js"
-  },
-  "devDependencies": {
-    "@babel/core": "7.28.0",
-    "@babel/plugin-transform-class-properties": "7.27.1",
-    "@babel/plugin-transform-object-rest-spread": "7.28.0",
-    "@babel/plugin-transform-private-methods": "7.27.1",
-    "@babel/plugin-transform-private-property-in-object": "7.27.1",
-    "@babel/plugin-syntax-dynamic-import": "7.8.3",
-    "@babel/plugin-transform-arrow-functions": "7.27.1",
-    "@babel/plugin-transform-regenerator": "7.28.1",
-    "@babel/plugin-transform-runtime": "7.28.0",
-    "@babel/plugin-transform-typescript": "7.28.0",
-    "@babel/preset-env": "7.28.0",
-    "@babel/preset-react": "7.27.1",
-    "@babel/preset-typescript": "7.27.1"
-  },
-  "resolutions": {
-    "**/@babel/runtime": "7.28.2",
-    "commander": "8.3.0",
-    "dcmjs": "0.49.4",
-    "dicomweb-client": "0.10.4",
-    "nth-check": "2.1.1",
-    "trim-newlines": "5.0.0",
-    "glob-parent": "6.0.2",
-    "trim": "1.0.1",
-    "package-json": "8.1.1",
-    "typescript": "5.5.4"
-  }
-}

babel.config.js

@@ -26,7 +26,9 @@ module.exports = {
         '@babel/preset-typescript',
       ],
       plugins: [
-        'babel-plugin-istanbul',
+        // jest's babel coverage provider injects babel-plugin-istanbul when
+        // --collectCoverage is set; adding it here too makes babel 7 (pulled in
+        // by jest 30) throw "Duplicate plugin/preset detected".
         '@babel/plugin-transform-object-rest-spread',
         '@babel/plugin-syntax-dynamic-import',
         '@babel/plugin-transform-regenerator',

bunfig.toml

@@ -1,2 +0,0 @@
-[install]
-frozenLockfile = true

bunfig.update-lockfile.toml

@@ -1,2 +0,0 @@
-[install]
-frozenLockfile = false

commit.txt

@@ -1 +1 @@
-cca1a8683bc7d392a3a07268f24585642d13b1cd
+6dd150d401ad73d60632a23378b7dfd4b5142690

extensions/cornerstone-dicom-pmap/.webpack/webpack.prod.js

@@ -1,8 +1,8 @@
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 const { merge } = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.base.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
+const MiniCssExtractPlugin = webpack.CssExtractRspackPlugin;
 
 const pkg = require('./../package.json');
 
@@ -35,9 +35,11 @@ module.exports = (env, argv) => {
       sideEffects: true,
     },
     output: {
+      library: {
+        name: 'ohif-extension-cornerstone-dicom-pmap',
+        type: 'umd',
+      },
       path: ROOT_DIR,
-      library: 'ohif-extension-cornerstone-dicom-pmap',
-      libraryTarget: 'umd',
       filename: pkg.main,
     },
     externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],

extensions/cornerstone-dicom-pmap/CHANGELOG.md

@@ -3,6 +3,619 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+
+### Bug Fixes
+
+* ohif tests to run with cornerstone 3d 5.0 ([#6043](https://github.com/OHIF/Viewers/issues/6043)) ([6dd150d](https://github.com/OHIF/Viewers/commit/6dd150d401ad73d60632a23378b7dfd4b5142690))
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+
+### Bug Fixes
+
+* Use newer ONNX version and load without errors ([#5854](https://github.com/OHIF/Viewers/issues/5854)) ([cc5dc20](https://github.com/OHIF/Viewers/commit/cc5dc201649bcbfb4cfad21141dbd56000d30f53)), closes [#5875](https://github.com/OHIF/Viewers/issues/5875) [#5884](https://github.com/OHIF/Viewers/issues/5884) [#5886](https://github.com/OHIF/Viewers/issues/5886) [#5893](https://github.com/OHIF/Viewers/issues/5893) [#5874](https://github.com/OHIF/Viewers/issues/5874) [#5865](https://github.com/OHIF/Viewers/issues/5865)
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+
+### Bug Fixes
+
+* A couple of changes to enable cs3d integration build ([#5944](https://github.com/OHIF/Viewers/issues/5944)) ([f6bbd5c](https://github.com/OHIF/Viewers/commit/f6bbd5c779e4692dc47c93327a890661b8dcc174))
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+
+### Features
+
+* Add combined build ([#5895](https://github.com/OHIF/Viewers/issues/5895)) ([1df671e](https://github.com/OHIF/Viewers/commit/1df671e9ab67d43f98bf09f6838ddc0a5f220277))
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+
+### Bug Fixes
+
+* **segmentation:** Display "No description S:{series number} {modality}" for segmentations with no label. ([#5874](https://github.com/OHIF/Viewers/issues/5874)) ([7b5d0ce](https://github.com/OHIF/Viewers/commit/7b5d0ce40e5422ccfce6091ac3d7559586cbe57e))
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+
+### Bug Fixes
+
+* Update CS3D 4.18.2 ([#5837](https://github.com/OHIF/Viewers/issues/5837)) ([5370b93](https://github.com/OHIF/Viewers/commit/5370b9382e7bfddeadd69bab9e653f5f997a6e19))
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+
+### Bug Fixes
+
+* palette color 8 encoded 16 ([#5823](https://github.com/OHIF/Viewers/issues/5823)) ([eeca1f7](https://github.com/OHIF/Viewers/commit/eeca1f7a7b529d1700f5d281a6fd98074547ffe9)), closes [#5813](https://github.com/OHIF/Viewers/issues/5813)
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap

extensions/cornerstone-dicom-pmap/package.json

@@ -1,42 +1,37 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-pmap",
-  "version": "3.13.0-beta.15",
+  "version": "3.13.0-beta.125",
   "description": "DICOM Parametric Map read workflow",
   "author": "OHIF",
   "license": "MIT",
+  "repository": "OHIF/Viewers",
   "main": "dist/ohif-extension-cornerstone-dicom-pmap.umd.js",
   "module": "src/index.tsx",
+  "engines": {
+    "node": ">=24"
+  },
   "files": [
     "dist/**",
     "public/**",
     "README.md"
   ],
-  "repository": "OHIF/Viewers",
-  "keywords": [
-    "ohif-extension"
-  ],
   "publishConfig": {
     "access": "public"
   },
-  "engines": {
-    "node": ">=14",
-    "npm": ">=6",
-    "yarn": ">=1.18.0"
-  },
   "scripts": {
     "clean": "shx rm -rf dist",
-    "clean:deep": "yarn run clean && shx rm -rf node_modules",
+    "clean:deep": "pnpm run clean && shx rm -rf node_modules",
-    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development rspack build --config .webpack/webpack.dev.js --watch",
-    "dev:dicom-pmap": "yarn run dev",
+    "dev:dicom-pmap": "pnpm run dev",
-    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production rspack build --config .webpack/webpack.prod.js",
-    "build:package-1": "yarn run build",
+    "build:package-1": "pnpm run build",
-    "start": "yarn run dev"
+    "start": "pnpm run dev"
   },
   "peerDependencies": {
-    "@ohif/core": "3.13.0-beta.15",
+    "@ohif/core": "workspace:*",
-    "@ohif/extension-cornerstone": "3.13.0-beta.15",
+    "@ohif/extension-cornerstone": "workspace:*",
-    "@ohif/extension-default": "3.13.0-beta.15",
+    "@ohif/extension-default": "workspace:*",
-    "@ohif/i18n": "3.13.0-beta.15",
+    "@ohif/i18n": "workspace:*",
     "prop-types": "15.8.1",
     "react": "18.3.1",
     "react-dom": "18.3.1",
@@ -45,9 +40,15 @@
     "react-router-dom": "6.30.3"
   },
   "dependencies": {
-    "@babel/runtime": "7.28.2",
+    "@babel/runtime": "7.29.7",
-    "@cornerstonejs/adapters": "4.15.29",
+    "@cornerstonejs/adapters": "5.4.17",
-    "@cornerstonejs/core": "4.15.29",
+    "@cornerstonejs/core": "5.4.17",
-    "@kitware/vtk.js": "34.15.1"
+    "@kitware/vtk.js": "35.5.3"
-  }
+  },
+  "devDependencies": {
+    "cross-env": "7.0.3"
+  },
+  "keywords": [
+    "ohif-extension"
+  ]
 }

extensions/cornerstone-dicom-rt/.webpack/webpack.prod.js

@@ -1,4 +1,4 @@
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 const { merge } = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.base.js');
@@ -32,9 +32,11 @@ module.exports = (env, argv) => {
       sideEffects: false,
     },
     output: {
+      library: {
+        name: 'ohif-extension-cornerstone-dicom-rt',
+        type: 'umd',
+      },
       path: ROOT_DIR,
-      library: 'ohif-extension-cornerstone-dicom-rt',
-      libraryTarget: 'umd',
       filename: pkg.main,
     },
     externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],

extensions/cornerstone-dicom-rt/CHANGELOG.md

@@ -3,6 +3,607 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+
+### Reverts
+
+* rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID ([#5943](https://github.com/OHIF/Viewers/issues/5943)) ([0e933c2](https://github.com/OHIF/Viewers/commit/0e933c256e07b7cda35ed2ba3cfb1ab35d895d57))
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+
+### Bug Fixes
+
+* **segmentation:** restrict overlay segmentation menu to same frame of reference as viewport background display set  ([#5900](https://github.com/OHIF/Viewers/issues/5900)) ([b9029ef](https://github.com/OHIF/Viewers/commit/b9029ef6f8d63a0e36ec929310c1c5ad3f563ef8))
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+
+### Bug Fixes
+
+* **segmentation overlay:** update viewport ds list upon seg delete - OHIF-2425 ([#5729](https://github.com/OHIF/Viewers/issues/5729)) ([b353541](https://github.com/OHIF/Viewers/commit/b35354120a01d89b27844f967c32c052bba8b096))
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt

extensions/cornerstone-dicom-rt/package.json

@@ -1,11 +1,15 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-rt",
-  "version": "3.13.0-beta.15",
+  "version": "3.13.0-beta.125",
   "description": "DICOM RT read workflow",
   "author": "OHIF",
   "license": "MIT",
+  "repository": "OHIF/Viewers",
   "main": "dist/ohif-extension-cornerstone-dicom-rt.umd.js",
   "module": "src/index.tsx",
+  "engines": {
+    "node": ">=24"
+  },
   "files": [
     "dist/**",
     "public/**",
@@ -14,29 +18,20 @@
   "publishConfig": {
     "access": "public"
   },
-  "repository": "OHIF/Viewers",
-  "keywords": [
-    "ohif-extension"
-  ],
-  "engines": {
-    "node": ">=14",
-    "npm": ">=6",
-    "yarn": ">=1.18.0"
-  },
   "scripts": {
     "clean": "shx rm -rf dist",
-    "clean:deep": "yarn run clean && shx rm -rf node_modules",
+    "clean:deep": "pnpm run clean && shx rm -rf node_modules",
-    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development rspack build --config .webpack/webpack.dev.js --watch",
-    "dev:dicom-seg": "yarn run dev",
+    "dev:dicom-seg": "pnpm run dev",
-    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production rspack build --config .webpack/webpack.prod.js",
-    "build:package-1": "yarn run build",
+    "build:package-1": "pnpm run build",
-    "start": "yarn run dev"
+    "start": "pnpm run dev"
   },
   "peerDependencies": {
-    "@ohif/core": "3.13.0-beta.15",
+    "@ohif/core": "workspace:*",
-    "@ohif/extension-cornerstone": "3.13.0-beta.15",
+    "@ohif/extension-cornerstone": "workspace:*",
-    "@ohif/extension-default": "3.13.0-beta.15",
+    "@ohif/extension-default": "workspace:*",
-    "@ohif/i18n": "3.13.0-beta.15",
+    "@ohif/i18n": "workspace:*",
     "prop-types": "15.8.1",
     "react": "18.3.1",
     "react-dom": "18.3.1",
@@ -45,6 +40,12 @@
     "react-router-dom": "6.30.3"
   },
   "dependencies": {
-    "@babel/runtime": "7.28.2"
+    "@babel/runtime": "7.29.7"
-  }
+  },
+  "devDependencies": {
+    "cross-env": "7.0.3"
+  },
+  "keywords": [
+    "ohif-extension"
+  ]
 }

extensions/cornerstone-dicom-rt/src/getSopClassHandlerModule.ts

@@ -1,5 +1,6 @@
 import { utils, Types as OhifTypes } from '@ohif/core';
 import i18n from '@ohif/i18n';
+import { segmentation as cstSegmentation } from '@cornerstonejs/tools';
 
 import { SOPClassHandlerId } from './id';
 import loadRTStruct from './loadRTStruct';
@@ -8,8 +9,6 @@ const { sopClassDictionary } = utils;
 
 const sopClassUids = [sopClassDictionary.RTStructureSetStorage];
 
-const cachedRTStructsSEG = new Set<string>();
-
 const loadPromises = {};
 
 function _getDisplaySetsFromSeries(
@@ -57,6 +56,7 @@ function _getDisplaySetsFromSeries(
     StudyInstanceUID,
     SOPClassHandlerId,
     SOPClassUID,
+    FrameOfReferenceUID: null,
     referencedImages: null,
     referencedSeriesInstanceUID: null,
     referencedDisplaySetInstanceUID: null,
@@ -96,6 +96,9 @@ function _getDisplaySetsFromSeries(
   displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
   displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
 
+  displaySet.FrameOfReferenceUID =
+    instance.ReferencedFrameOfReferenceSequence?.[0]?.FrameOfReferenceUID;
+
   const { displaySetService } = servicesManager.services;
   const referencedDisplaySets =
     displaySetService.getDisplaySetsForReferences(referencedSeriesSequence);
@@ -114,6 +117,7 @@ function _getDisplaySetsFromSeries(
         if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
           displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
           displaySet.isReconstructable = addedDisplaySet.isReconstructable;
+          displaySet.FrameOfReferenceUID = addedDisplaySet.FrameOfReferenceUID;
           unsubscribe();
         }
       }
@@ -122,6 +126,7 @@ function _getDisplaySetsFromSeries(
     const [referencedDisplaySet] = referencedDisplaySets;
     displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
     displaySet.isReconstructable = referencedDisplaySet.isReconstructable;
+    displaySet.FrameOfReferenceUID = referencedDisplaySet.FrameOfReferenceUID;
   }
 
   displaySet.load = ({ headers, createSegmentation = true }) =>
@@ -143,23 +148,13 @@ function _load(
   if (
     (rtDisplaySet.loading || rtDisplaySet.isLoaded) &&
     loadPromises[SOPInstanceUID] &&
-    cachedRTStructsSEG.has(rtDisplaySet.displaySetInstanceUID)
+    _segmentationExists(rtDisplaySet)
   ) {
     return loadPromises[SOPInstanceUID];
   }
 
   rtDisplaySet.loading = true;
 
-  const { unsubscribe } = segmentationService.subscribe(
-    segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
-    (evt: { rtDisplaySet: { displaySetInstanceUID: string } }) => {
-      if (evt.rtDisplaySet?.displaySetInstanceUID === rtDisplaySet.displaySetInstanceUID) {
-        cachedRTStructsSEG.add(rtDisplaySet.displaySetInstanceUID);
-        unsubscribe();
-      }
-    }
-  );
-
   // We don't want to fire multiple loads, so we'll wait for the first to finish
   // and also return the same promise to any other callers.
   loadPromises[SOPInstanceUID] = new Promise<void>(async (resolve, reject) => {
@@ -219,6 +214,10 @@ function _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
   return ReferencedSeriesSequence;
 }
 
+function _segmentationExists(segDisplaySet) {
+  return !!cstSegmentation.state.getSegmentation(segDisplaySet.displaySetInstanceUID);
+}
+
 function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
   const { servicesManager, extensionManager } = params;
 

extensions/cornerstone-dicom-rt/src/viewports/OHIFCornerstoneRTViewport.tsx

@@ -168,7 +168,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
 
     return () => {
       // remove the segmentation representations if seg displayset changed
-      segmentationService.removeSegmentationRepresentations(viewportId);
+      segmentationService.removeRepresentationsFromViewport(viewportId);
       referencedDisplaySetRef.current = null;
       toolGroupService.destroyToolGroup(toolGroupId);
     };

extensions/cornerstone-dicom-seg/.webpack/webpack.prod.js

@@ -1,8 +1,8 @@
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 const { merge } = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.base.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
+const MiniCssExtractPlugin = webpack.CssExtractRspackPlugin;
 
 const pkg = require('./../package.json');
 
@@ -35,9 +35,11 @@ module.exports = (env, argv) => {
       sideEffects: true,
     },
     output: {
+      library: {
+        name: 'ohif-extension-cornerstone-dicom-seg',
+        type: 'umd',
+      },
       path: ROOT_DIR,
-      library: 'ohif-extension-cornerstone-dicom-seg',
-      libraryTarget: 'umd',
       filename: pkg.main,
     },
     externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],

extensions/cornerstone-dicom-seg/CHANGELOG.md

@@ -3,6 +3,628 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+
+### Bug Fixes
+
+* ohif tests to run with cornerstone 3d 5.0 ([#6043](https://github.com/OHIF/Viewers/issues/6043)) ([6dd150d](https://github.com/OHIF/Viewers/commit/6dd150d401ad73d60632a23378b7dfd4b5142690))
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+
+### Bug Fixes
+
+* Use newer ONNX version and load without errors ([#5854](https://github.com/OHIF/Viewers/issues/5854)) ([cc5dc20](https://github.com/OHIF/Viewers/commit/cc5dc201649bcbfb4cfad21141dbd56000d30f53)), closes [#5875](https://github.com/OHIF/Viewers/issues/5875) [#5884](https://github.com/OHIF/Viewers/issues/5884) [#5886](https://github.com/OHIF/Viewers/issues/5886) [#5893](https://github.com/OHIF/Viewers/issues/5893) [#5874](https://github.com/OHIF/Viewers/issues/5874) [#5865](https://github.com/OHIF/Viewers/issues/5865)
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+
+### Bug Fixes
+
+* A couple of changes to enable cs3d integration build ([#5944](https://github.com/OHIF/Viewers/issues/5944)) ([f6bbd5c](https://github.com/OHIF/Viewers/commit/f6bbd5c779e4692dc47c93327a890661b8dcc174))
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+
+### Reverts
+
+* rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID ([#5943](https://github.com/OHIF/Viewers/issues/5943)) ([0e933c2](https://github.com/OHIF/Viewers/commit/0e933c256e07b7cda35ed2ba3cfb1ab35d895d57))
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+
+### Bug Fixes
+
+* **segmentation:** restrict overlay segmentation menu to same frame of reference as viewport background display set  ([#5900](https://github.com/OHIF/Viewers/issues/5900)) ([b9029ef](https://github.com/OHIF/Viewers/commit/b9029ef6f8d63a0e36ec929310c1c5ad3f563ef8))
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+
+### Bug Fixes
+
+* **SR:** Added support for spline and live wire SR items. ([#5870](https://github.com/OHIF/Viewers/issues/5870)) ([1d4802c](https://github.com/OHIF/Viewers/commit/1d4802c2a38dd75dca7afca87913e100453c9135))
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+
+### Features
+
+* Add combined build ([#5895](https://github.com/OHIF/Viewers/issues/5895)) ([1df671e](https://github.com/OHIF/Viewers/commit/1df671e9ab67d43f98bf09f6838ddc0a5f220277))
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+
+### Bug Fixes
+
+* **segmentation:** Display "No description S:{series number} {modality}" for segmentations with no label. ([#5874](https://github.com/OHIF/Viewers/issues/5874)) ([7b5d0ce](https://github.com/OHIF/Viewers/commit/7b5d0ce40e5422ccfce6091ac3d7559586cbe57e))
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+
+### Bug Fixes
+
+* Update CS3D 4.18.2 ([#5837](https://github.com/OHIF/Viewers/issues/5837)) ([5370b93](https://github.com/OHIF/Viewers/commit/5370b9382e7bfddeadd69bab9e653f5f997a6e19))
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+
+### Bug Fixes
+
+* palette color 8 encoded 16 ([#5823](https://github.com/OHIF/Viewers/issues/5823)) ([eeca1f7](https://github.com/OHIF/Viewers/commit/eeca1f7a7b529d1700f5d281a6fd98074547ffe9)), closes [#5813](https://github.com/OHIF/Viewers/issues/5813)
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg

extensions/cornerstone-dicom-seg/package.json

@@ -1,42 +1,37 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-seg",
-  "version": "3.13.0-beta.15",
+  "version": "3.13.0-beta.125",
   "description": "DICOM SEG read workflow",
   "author": "OHIF",
   "license": "MIT",
+  "repository": "OHIF/Viewers",
   "main": "dist/ohif-extension-cornerstone-dicom-seg.umd.js",
   "module": "src/index.tsx",
+  "engines": {
+    "node": ">=24"
+  },
   "files": [
     "dist/**",
     "public/**",
     "README.md"
   ],
-  "repository": "OHIF/Viewers",
-  "keywords": [
-    "ohif-extension"
-  ],
   "publishConfig": {
     "access": "public"
   },
-  "engines": {
-    "node": ">=14",
-    "npm": ">=6",
-    "yarn": ">=1.18.0"
-  },
   "scripts": {
     "clean": "shx rm -rf dist",
-    "clean:deep": "yarn run clean && shx rm -rf node_modules",
+    "clean:deep": "pnpm run clean && shx rm -rf node_modules",
-    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development rspack build --config .webpack/webpack.dev.js --watch",
-    "dev:dicom-seg": "yarn run dev",
+    "dev:dicom-seg": "pnpm run dev",
-    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production rspack build --config .webpack/webpack.prod.js",
-    "build:package-1": "yarn run build",
+    "build:package-1": "pnpm run build",
-    "start": "yarn run dev"
+    "start": "pnpm run dev"
   },
   "peerDependencies": {
-    "@ohif/core": "3.13.0-beta.15",
+    "@ohif/core": "workspace:*",
-    "@ohif/extension-cornerstone": "3.13.0-beta.15",
+    "@ohif/extension-cornerstone": "workspace:*",
-    "@ohif/extension-default": "3.13.0-beta.15",
+    "@ohif/extension-default": "workspace:*",
-    "@ohif/i18n": "3.13.0-beta.15",
+    "@ohif/i18n": "workspace:*",
     "prop-types": "15.8.1",
     "react": "18.3.1",
     "react-dom": "18.3.1",
@@ -45,9 +40,15 @@
     "react-router-dom": "6.30.3"
   },
   "dependencies": {
-    "@babel/runtime": "7.28.2",
+    "@babel/runtime": "7.29.7",
-    "@cornerstonejs/adapters": "4.15.29",
+    "@cornerstonejs/adapters": "5.4.17",
-    "@cornerstonejs/core": "4.15.29",
+    "@cornerstonejs/core": "5.4.17",
-    "@kitware/vtk.js": "34.15.1"
+    "@kitware/vtk.js": "35.5.3"
-  }
+  },
+  "devDependencies": {
+    "cross-env": "7.0.3"
+  },
+  "keywords": [
+    "ohif-extension"
+  ]
 }

extensions/cornerstone-dicom-seg/src/commandsModule.ts

@@ -2,11 +2,15 @@ import dcmjs from 'dcmjs';
 import { classes, Types, utils } from '@ohif/core';
 import { cache, metaData } from '@cornerstonejs/core';
 import { segmentation as cornerstoneToolsSegmentation } from '@cornerstonejs/tools';
-import { adaptersRT, helpers, adaptersSEG } from '@cornerstonejs/adapters';
+import { adaptersRT, adaptersSEG } from '@cornerstonejs/adapters';
 import { createReportDialogPrompt, useUIStateStore } from '@ohif/extension-default';
-import { DicomMetadataStore } from '@ohif/core';
 
 import PROMPT_RESPONSES from '../../default/src/utils/_shared/PROMPT_RESPONSES';
+import {
+  getSegmentationSaveOptions,
+  LABELMAP_SEG_SOP_CLASS_UID,
+  BITMAP_SEG_SOP_CLASS_UID,
+} from './utils/segmentationConfig';
 
 const getTargetViewport = ({ viewportId, viewportGridService }) => {
   const { viewports, activeViewportId } = viewportGridService.getState();
@@ -29,13 +33,12 @@ const {
   },
 } = adaptersRT;
 
-const { downloadDICOMData } = helpers;
-
 const commandsModule = ({
   servicesManager,
   extensionManager,
+  commandsManager,
 }: Types.Extensions.ExtensionParams): Types.Extensions.CommandsModule => {
-  const { segmentationService, displaySetService, viewportGridService } =
+  const { segmentationService, displaySetService, viewportGridService, customizationService } =
     servicesManager.services as AppTypes.Services;
 
   const actions = {
@@ -89,49 +92,85 @@ const commandsModule = ({
      * @returns Returns the generated segmentation data.
      */
     generateSegmentation: ({ segmentationId, options = {} }) => {
+      // `dataSource` (a data source name) is consumed here to resolve the store
+      // overrides; it must not be forwarded to the adapter's generateSegmentation.
+      const { dataSource: dataSourceName, ...generateOptions } = options;
       const segmentation = cornerstoneToolsSegmentation.state.getSegmentation(segmentationId);
-      const predecessorImageId = options.predecessorImageId ?? segmentation.predecessorImageId;
+      const predecessorImageId =
+        generateOptions.predecessorImageId ?? segmentation.predecessorImageId;
 
-      const { imageIds } = segmentation.representationData.Labelmap;
+      // A data source may override the app-wide `segmentation.store.*` defaults
+      // via `configuration.segmentation.store` (different back ends support
+      // different SEG encodings). Use the named target data source when storing,
+      // otherwise the active one (e.g. download).
+      const dataSourceDefinition = dataSourceName
+        ? extensionManager.getDataSourceDefinition(dataSourceName)
+        : extensionManager.getActiveDataSourceDefinition();
+      const dataSourceStoreOverride = dataSourceDefinition?.configuration?.segmentation?.store;
 
-      const segImages = imageIds.map(imageId => cache.getImage(imageId));
+      const labelmapData = segmentation.representationData.Labelmap;
-      const referencedImages = segImages.map(image => cache.getImage(image.referencedImageId));
 
-      const labelmaps2D = [];
+      // Build a labelmap3D (one labelmaps2D entry per source slice) from a list of
+      // derived labelmap image ids. When `referencedImageIds` is supplied (the
+      // multi-layer/overlap path) each frame is indexed by its source slice so the
+      // layers align to the same frames; otherwise frames are sequential (the legacy
+      // single-layer behavior, kept byte-identical).
+      const buildLabelmap3D = (segImageIds: string[], metadata, referencedImageIds?: string[]) => {
+        const segImages = segImageIds.map(imageId => cache.getImage(imageId));
+        const labelmaps2D = [];
 
-      let z = 0;
+        // Map each source imageId to its frame index once (O(n)) so the per-slice lookup
+        // below is O(1) — avoids the O(slices^2) indexOf scan on the multi-layer path.
+        const referencedFrameIndexById = referencedImageIds
+          ? new Map(referencedImageIds.map((imageId, index) => [imageId, index]))
+          : undefined;
 
-      for (const segImage of segImages) {
+        let z = 0;
-        const segmentsOnLabelmap = new Set();
-        const pixelData = segImage.getPixelData();
-        const { rows, columns } = segImage;
 
-        // Use a single pass through the pixel data
+        for (const segImage of segImages) {
-        for (let i = 0; i < pixelData.length; i++) {
+          const segmentsOnLabelmap = new Set();
-          const segment = pixelData[i];
+          const pixelData = segImage.getPixelData();
-          if (segment !== 0) {
+          const { rows, columns } = segImage;
-            segmentsOnLabelmap.add(segment);
+
+          // Use a single pass through the pixel data
+          for (let i = 0; i < pixelData.length; i++) {
+            const segment = pixelData[i];
+            if (segment !== 0) {
+              segmentsOnLabelmap.add(segment);
+            }
           }
+
+          const frameIndex = referencedFrameIndexById
+            ? referencedFrameIndexById.get(segImage.referencedImageId) ?? -1
+            : z++;
+
+          if (frameIndex < 0) {
+            continue;
+          }
+
+          labelmaps2D[frameIndex] = {
+            segmentsOnLabelmap: Array.from(segmentsOnLabelmap),
+            pixelData,
+            rows,
+            columns,
+          };
         }
 
-        labelmaps2D[z++] = {
+        const allSegmentsOnLabelmap = labelmaps2D
-          segmentsOnLabelmap: Array.from(segmentsOnLabelmap),
+          .filter(Boolean)
-          pixelData,
+          .map(labelmap => labelmap.segmentsOnLabelmap);
-          rows,
+
-          columns,
+        return {
+          segmentsOnLabelmap: Array.from(new Set(allSegmentsOnLabelmap.flat())),
+          metadata,
+          labelmaps2D,
         };
-      }
-
-      const allSegmentsOnLabelmap = labelmaps2D.map(labelmap => labelmap.segmentsOnLabelmap);
-
-      const labelmap3D = {
-        segmentsOnLabelmap: Array.from(new Set(allSegmentsOnLabelmap.flat())),
-        metadata: [],
-        labelmaps2D,
       };
 
+      // Segment metadata (shared across all layers).
       const segmentationInOHIF = segmentationService.getSegmentation(segmentationId);
       const representations = segmentationService.getRepresentationsForSegmentation(segmentationId);
+      const metadata = [];
 
       Object.entries(segmentationInOHIF.segments).forEach(([segmentIndex, segment]) => {
         // segmentation service already has a color for each segment
@@ -152,7 +191,7 @@ const commandsModule = ({
           color.slice(0, 3).map(value => value / 255)
         ).map(value => Math.round(value));
 
-        const segmentMetadata = {
+        metadata[segmentIndex] = {
           SegmentNumber: segmentIndex.toString(),
           SegmentLabel: label,
           SegmentAlgorithmType: segment?.algorithmType || 'MANUAL',
@@ -169,13 +208,76 @@ const commandsModule = ({
             CodeMeaning: 'Tissue',
           },
         };
-        labelmap3D.metadata[segmentIndex] = segmentMetadata;
       });
 
-      const generatedSegmentation = generateSegmentation(referencedImages, labelmap3D, metaData, {
+      // Multi-layer (overlapping) SEGs register one labelmap layer per conflict-free
+      // group. Export each layer as its own labelmap3D against the UNIQUE referenced
+      // source series, so cornerstone writes overlapping segments as separate frames
+      // that reference the same source slice (the DICOM SEG overlap encoding). The
+      // cs3D adapter's fillSegmentation accepts an array of labelmap3D for exactly
+      // this. Single-layer SEGs keep the original single-labelmap3D path unchanged.
+      const layers = labelmapData.labelmaps ? Object.values(labelmapData.labelmaps) : undefined;
+
+      // The referenced source images must be fully loaded (in cache) before we can
+      // build the SEG dataset against them; fail loudly rather than passing undefined
+      // frames to the adapter.
+      const resolveReferencedImage = (referencedImageId: string, sliceIndex: number) => {
+        const referencedImage = cache.getImage(referencedImageId);
+        if (!referencedImage) {
+          throw new Error(
+            `Referenced source image not in cache for segmentation slice ${sliceIndex} ` +
+              `(referencedImageId: ${referencedImageId}). Ensure the referenced series is fully loaded before storing.`
+          );
+        }
+        return referencedImage;
+      };
+
+      let referencedImages;
+      let labelmaps3D;
+
+      if (layers && layers.length > 1) {
+        const referencedImageIds =
+          layers[0].referencedImageIds ?? labelmapData.referencedImageIds ?? [];
+        referencedImages = referencedImageIds.map(resolveReferencedImage);
+        labelmaps3D = layers.map(layer =>
+          buildLabelmap3D(layer.imageIds ?? [], metadata, referencedImageIds)
+        );
+      } else {
+        const { imageIds } = labelmapData;
+        const segImages = imageIds.map(imageId => cache.getImage(imageId));
+        referencedImages = segImages.map((image, sliceIndex) =>
+          resolveReferencedImage(image.referencedImageId, sliceIndex)
+        );
+        labelmaps3D = buildLabelmap3D(imageIds, metadata);
+      }
+
+      const saveOptions = {
         predecessorImageId,
-        ...options,
+        ...getSegmentationSaveOptions(customizationService, dataSourceStoreOverride),
-      });
+        ...generateOptions,
+      };
+
+      // A LABELMAP SEG frame stores a single label per voxel, so the labelmap
+      // encoder cannot represent overlapping segments — it keeps only the last
+      // layer written to each voxel. Overlapping segmentations arrive here as
+      // multiple layers, so switch those to the binary SEG encoding, which
+      // writes overlapping segments as separate frames referencing the same
+      // source slice.
+      const hasOverlappingLayers = Boolean(layers && layers.length > 1);
+      if (hasOverlappingLayers && saveOptions.sopClassUID === LABELMAP_SEG_SOP_CLASS_UID) {
+        console.warn(
+          'generateSegmentation: overlapping segments cannot be stored as a LABELMAP SEG; ' +
+            'switching to the binary SEG encoding for this store.'
+        );
+        saveOptions.sopClassUID = BITMAP_SEG_SOP_CLASS_UID;
+      }
+
+      const generatedSegmentation = generateSegmentation(
+        referencedImages,
+        labelmaps3D,
+        metaData,
+        saveOptions
+      );
 
       return generatedSegmentation;
     },
@@ -194,8 +296,11 @@ const commandsModule = ({
       const generatedSegmentation = actions.generateSegmentation({
         segmentationId,
       });
-
+      const storeFn = commandsManager.runCommand('createStoreFunction', {
-      downloadDICOMData(generatedSegmentation.dataset, `${segmentationInOHIF.label}`);
+        dataSource: 'download',
+        defaultFileName: `${segmentationInOHIF.label}.dcm`,
+      });
+      storeFn(generatedSegmentation.dataset);
     },
     /**
      * Stores a segmentation based on the provided segmentationId into a specified data source.
@@ -217,11 +322,10 @@ const commandsModule = ({
       }
 
       const { label, predecessorImageId } = segmentation;
-      const defaultDataSource = dataSource ?? extensionManager.getActiveDataSource()[0];
 
       const {
         value: reportName,
-        dataSourceName: selectedDataSource,
+        dataSourceName,
         series,
         priorSeriesNumber,
         action,
@@ -231,55 +335,65 @@ const commandsModule = ({
         predecessorImageId,
         title: 'Store Segmentation',
         modality,
+        enableDownload: true,
       });
 
-      if (action === PROMPT_RESPONSES.CREATE_REPORT) {
+      if (action !== PROMPT_RESPONSES.CREATE_REPORT) {
-        try {
+        return;
-          const selectedDataSourceConfig = selectedDataSource
+      }
-            ? extensionManager.getDataSources(selectedDataSource)[0]
-            : defaultDataSource;
 
-          const args = {
+      const defaultFileName =
-            segmentationId,
+        modality === 'RTSTRUCT' ? `rtss-${segmentationId}.dcm` : `${label || 'segmentation'}.dcm`;
-            options: {
-              SeriesDescription: series ? undefined : reportName || label || 'Contour Series',
-              SeriesNumber: series ? undefined : 1 + priorSeriesNumber,
-              predecessorImageId: series,
-            },
-          };
-          const generatedDataAsync =
-            (modality === 'SEG' && actions.generateSegmentation(args)) ||
-            (modality === 'RTSTRUCT' && actions.generateContour(args));
-          const generatedData = await generatedDataAsync;
 
-          if (!generatedData || !generatedData.dataset) {
+      const storeFn = commandsManager.runCommand('createStoreFunction', {
-            throw new Error('Error during segmentation generation');
+        dataSource: dataSourceName,
-          }
+        defaultFileName,
+      });
 
-          const { dataset: naturalizedReport } = generatedData;
+      if (!storeFn) {
+        throw new Error(`No valid store for dataSource: ${dataSourceName}`);
+      }
 
-          // DCMJS assigns a dummy study id during creation, and this can cause problems, so clearing it out
+      try {
-          if (naturalizedReport.StudyID === 'No Study ID') {
+        const args = {
-            naturalizedReport.StudyID = '';
+          segmentationId,
-          }
+          options: {
+            // Resolve store overrides against the data source we are storing into.
+            dataSource: dataSourceName,
+            SeriesDescription: series ? undefined : reportName || label || 'Contour Series',
+            SeriesNumber: series ? undefined : 1 + priorSeriesNumber,
+            predecessorImageId: series,
+          },
+        };
+        const generatedDataAsync =
+          (modality === 'SEG' && actions.generateSegmentation(args)) ||
+          (modality === 'RTSTRUCT' && actions.generateContour(args));
+        const generatedData = await generatedDataAsync;
 
-          await selectedDataSourceConfig.store.dicom(naturalizedReport);
+        if (!generatedData?.dataset) {
-
+          throw new Error('Error during segmentation generation');
-          // add the information for where we stored it to the instance as well
-          naturalizedReport.wadoRoot = selectedDataSourceConfig.getConfig().wadoRoot;
-
-          DicomMetadataStore.addInstances([naturalizedReport], true);
-
-          return naturalizedReport;
-        } catch (error) {
-          console.debug('Error storing segmentation:', error);
-          throw error;
         }
+
+        const { dataset: naturalizedReport } = generatedData;
+
+        // DCMJS assigns a dummy study id during creation, and this can cause problems, so clearing it out
+        if (naturalizedReport.StudyID === 'No Study ID') {
+          naturalizedReport.StudyID = '';
+        }
+
+        await storeFn(naturalizedReport, {});
+
+        return naturalizedReport;
+      } catch (error) {
+        console.debug('Error storing segmentation:', error);
+        throw error;
       }
     },
 
     generateContour: async args => {
       const { segmentationId, options } = args;
+      // `dataSource` is only used by the SEG store path; keep it out of the RTSS options.
+      const { dataSource: _dataSource, ...contourOptions } = options ?? {};
       const segmentations = segmentationService.getSegmentation(segmentationId);
 
       // inject colors to the segmentIndex
@@ -292,10 +406,11 @@ const commandsModule = ({
           Number(segmentIndex)
         );
       });
-      const predecessorImageId = options?.predecessorImageId ?? segmentations.predecessorImageId;
+      const predecessorImageId =
+        contourOptions.predecessorImageId ?? segmentations.predecessorImageId;
       const dataset = await generateRTSSFromRepresentation(segmentations, {
         predecessorImageId,
-        ...options,
+        ...contourOptions,
       });
       return { dataset };
     },
@@ -307,14 +422,11 @@ const commandsModule = ({
     downloadRTSS: async args => {
       const { dataset } = await actions.generateContour(args);
       const { InstanceNumber: instanceNumber = 1, SeriesInstanceUID: seriesUID } = dataset;
-
+      const storeFn = commandsManager.runCommand('createStoreFunction', {
-      try {
+        dataSource: 'download',
-        //Create a URL for the binary.
+        defaultFileName: `rtss-${seriesUID}-${instanceNumber}.dcm`,
-        const filename = `rtss-${seriesUID}-${instanceNumber}.dcm`;
+      });
-        downloadDICOMData(dataset, filename);
+      await storeFn(dataset);
-      } catch (e) {
-        console.warn(e);
-      }
     },
 
     toggleActiveSegmentationUtility: ({ itemId: buttonId }) => {

extensions/cornerstone-dicom-seg/src/components/LogicalContourOperationsOptions.tsx

@@ -70,7 +70,10 @@ function SegmentSelector({
         onValueChange={onValueChange}
         value={value}
       >
-        <SelectTrigger className="overflow-hidden">
+        <SelectTrigger
+          className="overflow-hidden"
+          data-cy={`logical-contour-segment-${label.toLowerCase()}-trigger`}
+        >
           <SelectValue placeholder={t(placeholder)} />
         </SelectTrigger>
         <SelectContent>
@@ -180,6 +183,7 @@ function LogicalContourOperationOptions() {
                     value={value}
                     key={`logical-contour-operation-${value}`}
                     onClick={() => setOperation(option)}
+                    data-cy={`logical-contour-operation-${value}`}
                   >
                     <Icons.ByName name={icon}></Icons.ByName>
                   </TabsTrigger>
@@ -207,6 +211,7 @@ function LogicalContourOperationOptions() {
       />
       <div className="flex justify-end pl-[34px]">
         <Button
+          data-cy="apply-logical-contour-operation"
           className="border-primary/60 grow border"
           variant="ghost"
           onClick={() => {
@@ -221,6 +226,7 @@ function LogicalContourOperationOptions() {
         <div className="flex items-center justify-start gap-2">
           <Switch
             id="logical-contour-operations-create-new-segment-switch"
+            data-cy="logical-contour-create-new-segment-switch"
             onCheckedChange={setCreateNewSegment}
           ></Switch>
           <Label htmlFor="logical-contour-operations-create-new-segment-switch">

extensions/cornerstone-dicom-seg/src/customizations/segmentationCustomization.ts

@@ -0,0 +1,29 @@
+import {
+  DEFAULT_SEG_STORE_MODE,
+  DEFAULT_SEG_STORE_TRANSFER_SYNTAX_UID,
+  type SegmentationMode,
+} from '../utils/segmentationConfig';
+
+export type SegmentLabelCustomization = {
+  enabledByDefault?: boolean;
+  labelColor?: number[];
+  hoverTimeout?: number;
+  background?: string;
+};
+
+export type SegmentationStoreCustomization = {
+  defaultMode?: SegmentationMode;
+  transferSyntaxUID?: string;
+};
+
+/** Extension-registered defaults: Label Map SEG + RLE Lossless. */
+const segmentationCustomization = {
+  'segmentation.store.defaultMode': DEFAULT_SEG_STORE_MODE,
+  'segmentation.store.transferSyntaxUID': DEFAULT_SEG_STORE_TRANSFER_SYNTAX_UID,
+  'segmentation.segmentLabel': {
+    enabledByDefault: false,
+    hoverTimeout: 1,
+  } satisfies SegmentLabelCustomization,
+};
+
+export default segmentationCustomization;

extensions/cornerstone-dicom-seg/src/getCustomizationModule.ts

@@ -0,0 +1,10 @@
+import segmentationCustomization from './customizations/segmentationCustomization';
+
+export default function getCustomizationModule() {
+  return [
+    {
+      name: 'default',
+      value: segmentationCustomization,
+    },
+  ];
+}

extensions/cornerstone-dicom-seg/src/getSopClassHandlerModule.ts

@@ -1,16 +1,237 @@
-import { utils, Types as OhifTypes } from '@ohif/core';
+import { utils, Types as OhifTypes, DicomMetadataStore, classes, log } from '@ohif/core';
 import i18n from '@ohif/i18n';
-import { metaData, eventTarget } from '@cornerstonejs/core';
+import { metaData, eventTarget, utilities as csUtils } from '@cornerstonejs/core';
 import { CONSTANTS, segmentation as cstSegmentation } from '@cornerstonejs/tools';
 import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
 
 import { SOPClassHandlerId } from './id';
 import { dicomlabToRGB } from './utils/dicomlabToRGB';
+import { getSegmentationParserType } from './utils/segmentationConfig';
+import {
+  getFrameIndexFromImageId,
+  isLocalSchemeImageId,
+  stripFrameFromImageId,
+} from './utils/segLocalImageIds';
 
 const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4', '1.2.840.10008.5.1.4.1.1.66.7'];
+const LABELMAP_SEG_SOP_CLASS_UID = '1.2.840.10008.5.1.4.1.1.66.7';
 
 const loadPromises = {};
 
+const SEG_LOAD_LOG_PREFIX = '[SEG load]';
+
+// Max number of SEG frames fetched/decoded concurrently by the segmentation
+// loader. Hard-coded to 16 for now; intended to become configurable (and to
+// pair with the full-instance prefetch capability) in a follow-up.
+const SEG_FRAME_DECODE_CONCURRENCY = 16;
+
+
+function _normalizeImageId(imageId: string | string[] | undefined): string | undefined {
+  if (imageId == null) {
+    return undefined;
+  }
+  return Array.isArray(imageId) ? imageId[0] : imageId;
+}
+
+/**
+ * Expands a WADO-RS frame imageId (…/frames/1) into one imageId per frame.
+ * Multiframe SEG is stored as separate /frames/N resources on the server.
+ */
+function getFrameImageIds(segImageId: string, numberOfFrames: number): string[] {
+  const frameMatch = segImageId.match(/(.*\/frames\/)(\d+)(.*)$/);
+  if (!frameMatch || numberOfFrames <= 1) {
+    return [segImageId];
+  }
+
+  const prefix = frameMatch[1];
+  const suffix = frameMatch[3] || '';
+  const frameImageIds: string[] = [];
+
+  for (let frameNumber = 1; frameNumber <= numberOfFrames; frameNumber++) {
+    frameImageIds.push(`${prefix}${frameNumber}${suffix}`);
+  }
+
+  return frameImageIds;
+}
+
+function _getSegNumberOfFrames(instance: Record<string, unknown>): number {
+  const fromTag = Number(instance.NumberOfFrames);
+  if (fromTag > 0) {
+    return fromTag;
+  }
+
+  const perFrame = instance.PerFrameFunctionalGroupsSequence;
+  if (Array.isArray(perFrame) && perFrame.length > 0) {
+    return perFrame.length;
+  }
+
+  return 1;
+}
+
+function _ensureSegImageIdMetadataRegistered(
+  imageId: string | undefined,
+  instance: Record<string, unknown>
+): void {
+  if (!imageId) {
+    return;
+  }
+
+  const metadataProvider = classes.MetadataProvider;
+
+  const StudyInstanceUID = instance.StudyInstanceUID as string | undefined;
+  const SeriesInstanceUID = instance.SeriesInstanceUID as string | undefined;
+  const SOPInstanceUID = (instance.SOPInstanceUID || instance.SopInstanceUID) as
+    | string
+    | undefined;
+
+  if (!StudyInstanceUID || !SeriesInstanceUID || !SOPInstanceUID) {
+    return;
+  }
+
+  metadataProvider.addImageIdToUIDs(imageId, {
+    StudyInstanceUID,
+    SeriesInstanceUID,
+    SOPInstanceUID,
+    frameNumber: getFrameIndexFromImageId(imageId),
+  });
+}
+
+/** Ensures metadataProvider.get('instance', imageId) resolves for frame-qualified local SEG ids. */
+function _ensureSegInstanceMetadataAvailable(
+  imageId: string | undefined,
+  instance: Record<string, unknown>
+): void {
+  if (!imageId) {
+    return;
+  }
+
+  _ensureSegImageIdMetadataRegistered(imageId, instance);
+
+  if (metaData.get('instance', imageId)) {
+    return;
+  }
+
+  const StudyInstanceUID = instance.StudyInstanceUID as string | undefined;
+  const SeriesInstanceUID = instance.SeriesInstanceUID as string | undefined;
+  const SOPInstanceUID = (instance.SOPInstanceUID || instance.SopInstanceUID) as
+    | string
+    | undefined;
+
+  const storedInstance =
+    StudyInstanceUID && SeriesInstanceUID && SOPInstanceUID
+      ? DicomMetadataStore.getInstance(StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID)
+      : undefined;
+
+  classes.MetadataProvider.addCustomMetadata(
+    imageId,
+    'instance',
+    storedInstance || instance
+  );
+}
+
+function _getSegDataSource(extensionManager, instance: Record<string, unknown>) {
+  const StudyInstanceUID = instance.StudyInstanceUID as string | undefined;
+  const SeriesInstanceUID = instance.SeriesInstanceUID as string | undefined;
+  const SOPInstanceUID = (instance.SOPInstanceUID || instance.SopInstanceUID) as
+    | string
+    | undefined;
+
+  let localUrl: string | undefined;
+
+  if (StudyInstanceUID && SeriesInstanceUID && SOPInstanceUID) {
+    const storedInstance = DicomMetadataStore.getInstance(
+      StudyInstanceUID,
+      SeriesInstanceUID,
+      SOPInstanceUID
+    );
+    localUrl = storedInstance?.url as string | undefined;
+  }
+
+  localUrl = localUrl || (instance.url as string | undefined);
+
+  if (localUrl && isLocalSchemeImageId(localUrl)) {
+    const dicomLocal = extensionManager.getDataSources('dicomlocal');
+
+    if (dicomLocal?.[0]) {
+      return dicomLocal[0];
+    }
+  }
+
+  return extensionManager.getActiveDataSource()[0];
+}
+
+function _getSegImageIdFromInstance(
+  instance: Record<string, unknown>,
+  dataSource: { getImageIdsForInstance?: (args: { instance: unknown; frame?: number }) => unknown }
+): string | undefined {
+  const numberOfFrames = _getSegNumberOfFrames(instance);
+  const frame = numberOfFrames > 1 ? 1 : undefined;
+
+  return _normalizeImageId(
+    dataSource.getImageIdsForInstance?.({ instance, frame }) as string | string[] | undefined
+  );
+}
+
+function _resolveFrameImageIds(
+  segImageIdStr: string,
+  instance: Record<string, unknown>,
+  dataSource: { getImageIdsForInstance?: (args: { instance: unknown; frame?: number }) => unknown }
+): string[] {
+  const numberOfFrames = _getSegNumberOfFrames(instance);
+  const fromFrameUrl = getFrameImageIds(segImageIdStr, numberOfFrames);
+
+  if (fromFrameUrl.length > 1) {
+    return fromFrameUrl;
+  }
+
+  if (numberOfFrames <= 1) {
+    return [segImageIdStr];
+  }
+
+  const frameImageIds: string[] = [];
+
+  for (let frame = 1; frame <= numberOfFrames; frame++) {
+    const frameImageId = _normalizeImageId(
+      dataSource.getImageIdsForInstance?.({ instance, frame }) as string | string[] | undefined
+    );
+
+    if (frameImageId) {
+      frameImageIds.push(frameImageId);
+    }
+  }
+
+  return frameImageIds.length ? frameImageIds : [segImageIdStr];
+}
+
+function _logSegImageIds({
+  segDisplaySet,
+  segImageIdStr,
+  frameImageIds,
+  referencedImageIds,
+}: {
+  segDisplaySet: AppTypes.DisplaySet;
+  segImageIdStr: string;
+  frameImageIds: string[];
+  referencedImageIds: string[];
+}) {
+  const instance = segDisplaySet.instance as Record<string, unknown>;
+  const numberOfFrames = Number(instance?.NumberOfFrames) || 1;
+
+  log.debug(SEG_LOAD_LOG_PREFIX, 'Loading SEG pixel data', {
+    SOPInstanceUID: segDisplaySet.SOPInstanceUID,
+    SeriesInstanceUID: segDisplaySet.SeriesInstanceUID,
+    SOPClassUID: segDisplaySet.SOPClassUID,
+    NumberOfFrames: numberOfFrames,
+    segmentCount: Object.keys(segDisplaySet.segments || {}).length,
+    referencedDisplaySetInstanceUID: segDisplaySet.referencedDisplaySetInstanceUID,
+    referencedImageIdCount: referencedImageIds.length,
+    referencedImageIds,
+    segImageIdForMetadata: segImageIdStr,
+    frameImageIds,
+    loadSegFramesIndividually: frameImageIds.length > 1,
+  });
+}
+
 function _getDisplaySetsFromSeries(
   instances,
   servicesManager: AppTypes.ServicesManager,
@@ -30,6 +251,7 @@ function _getDisplaySetsFromSeries(
     SeriesDate,
     StructureSetDate,
     SOPClassUID,
+    FrameOfReferenceUID,
     wadoRoot,
     wadoUri,
     wadoUriRoot,
@@ -49,6 +271,7 @@ function _getDisplaySetsFromSeries(
     StudyInstanceUID,
     SOPClassHandlerId,
     SOPClassUID,
+    FrameOfReferenceUID,
     referencedImages: null,
     referencedSeriesInstanceUID: null,
     referencedDisplaySetInstanceUID: null,
@@ -104,6 +327,7 @@ function _getDisplaySetsFromSeries(
         if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
           displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
           displaySet.isReconstructable = addedDisplaySet.isReconstructable;
+          displaySet.FrameOfReferenceUID = addedDisplaySet.FrameOfReferenceUID;
           unsubscribe();
         }
       }
@@ -111,6 +335,7 @@ function _getDisplaySetsFromSeries(
   } else {
     displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
     displaySet.isReconstructable = referencedDisplaySet.isReconstructable;
+    displaySet.FrameOfReferenceUID = referencedDisplaySet.FrameOfReferenceUID;
   }
 
   displaySet.load = async ({ headers }) =>
@@ -167,6 +392,11 @@ function _load(
       });
   });
 
+  // Expose the in-flight load promise so observers (e.g. the viewport service
+  // waiting to attach the representation) can react to a load failure without
+  // re-invoking load().
+  segDisplaySet.loadingPromise = loadPromises[SOPInstanceUID];
+
   return loadPromises[SOPInstanceUID];
 }
 
@@ -174,16 +404,18 @@ async function _loadSegments({
   extensionManager,
   servicesManager,
   segDisplaySet,
-  headers,
+}: withAppTypes<{ segDisplaySet: AppTypes.DisplaySet }>) {
-}: withAppTypes) {
+  const { segmentationService, uiNotificationService, customizationService } =
-  const utilityModule = extensionManager.getModuleEntry(
+    servicesManager.services;
-    '@ohif/extension-cornerstone.utilityModule.common'
+  const instance = segDisplaySet.instance as Record<string, unknown>;
-  );
+  const dataSource = _getSegDataSource(extensionManager, instance);
+  const segImageIdStr = _getSegImageIdFromInstance(instance, dataSource);
 
-  const { segmentationService, uiNotificationService } = servicesManager.services;
+  if (!segImageIdStr) {
-
+    throw new Error(
-  const { dicomLoaderService } = utilityModule.exports;
+      'Could not get imageId for SEG instance (no local wadouri url and getImageIdsForInstance returned nothing).'
-  const arrayBuffer = await dicomLoaderService.findDicomDataPromise(segDisplaySet, null, headers);
+    );
+  }
 
   const referencedDisplaySet = servicesManager.services.displaySetService.getDisplaySetByUID(
     segDisplaySet.referencedDisplaySetInstanceUID
@@ -193,31 +425,114 @@ async function _loadSegments({
     throw new Error('referencedDisplaySet is missing for SEG');
   }
 
+  // Prefer cached stack imageIds (multiframe SEG fix #4890), then data source expansion.
   let { imageIds } = referencedDisplaySet;
 
-  if (!imageIds) {
+  if (!imageIds?.length) {
-    // try images
+    imageIds = dataSource.getImageIdsForDisplaySet?.(referencedDisplaySet);
-    const { images } = referencedDisplaySet;
-    imageIds = images.map(image => image.imageId);
   }
 
-  // Todo: what should be defaults here
+  if (!imageIds?.length) {
+    imageIds = (referencedDisplaySet as { images?: { imageId: string }[] }).images?.map(
+      (img: { imageId: string }) => img.imageId
+    );
+  }
+
+  if (!imageIds?.length) {
+    throw new Error('referencedDisplaySet has no imageIds');
+  }
+
+  (segDisplaySet as AppTypes.DisplaySet & { referencedImageIds?: string[] }).referencedImageIds =
+    imageIds;
+
+  if (!referencedDisplaySet.imageIds?.length) {
+    referencedDisplaySet.imageIds = imageIds;
+  }
+
+  const frameImageIds = _resolveFrameImageIds(
+    segImageIdStr,
+    segDisplaySet.instance as Record<string, unknown>,
+    dataSource
+  );
+
+  const segImageIdForMetadata = isLocalSchemeImageId(segImageIdStr)
+    ? stripFrameFromImageId(segImageIdStr)
+    : segImageIdStr;
+
+  _logSegImageIds({
+    segDisplaySet,
+    segImageIdStr: segImageIdForMetadata,
+    frameImageIds,
+    referencedImageIds: imageIds,
+  });
+
+  _ensureSegInstanceMetadataAvailable(segImageIdForMetadata, instance);
+  frameImageIds.forEach(id => _ensureSegInstanceMetadataAvailable(id, instance));
+
   const tolerance = 0.001;
-  eventTarget.addEventListener(Enums.Events.SEGMENTATION_LOAD_PROGRESS, evt => {
+  const onProgress = evt => {
     const { percentComplete } = evt.detail;
     segmentationService._broadcastEvent(segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE, {
       percentComplete,
     });
-  });
+  };
+  eventTarget.addEventListener(Enums.Events.SEGMENTATION_LOAD_PROGRESS, onProgress);
 
-  const results = await adaptersSEG.Cornerstone3D.Segmentation.createFromDICOMSegBuffer(
+  // Fetch the whole SEG instance as a single Part 10 object and register its
-    imageIds,
+  // per-frame compressed pixels into the Cornerstone3D frame registry, so the
-    arrayBuffer,
+  // per-frame loads below are served locally instead of one network request
-    { metadataProvider: metaData, tolerance }
+  // per frame: SEG frames are so small and numerous that one bulk fetch beats
-  );
+  // hundreds of tiny requests. Enabled by default; per-frame loading is the
+  // exception (loadMultiframeAsPart10: false in the data source config, or the
+  // cornerstone.segmentation.loadMultiframeAsPart10 customization). The
+  // prefetch is awaited until it completes OR fails — deliberately no timeout:
+  // a failed/unsupported instance fetch resolves quickly and falls back to
+  // per-frame, while a slow large fetch is still the fastest way to all frames.
+  const loadMultiframeAsPart10 =
+    (dataSource?.getConfig?.()?.loadMultiframeAsPart10 as boolean | undefined) ??
+    (customizationService?.getCustomization?.(
+      'cornerstone.segmentation.loadMultiframeAsPart10'
+    ) as boolean | undefined) ??
+    true;
+
+  let prefetch;
+  if (loadMultiframeAsPart10) {
+    prefetch = dataSource.retrieve?.prefetchInstanceFrames?.({
+      instance,
+      imageId: segImageIdForMetadata,
+    });
+
+    if (prefetch?.done) {
+      await prefetch.done;
+    }
+  }
+
+  let results;
+  try {
+    results = await adaptersSEG.Cornerstone3D.Segmentation.createFromDicomSegImageId(
+      imageIds,
+      segImageIdForMetadata,
+      {
+        metadataProvider: metaData,
+        tolerance,
+        parserType: getSegmentationParserType(
+          segDisplaySet.SOPClassUID,
+          customizationService
+        ),
+        frameImageIds,
+        concurrency: SEG_FRAME_DECODE_CONCURRENCY,
+      }
+    );
+  } finally {
+    eventTarget.removeEventListener(Enums.Events.SEGMENTATION_LOAD_PROGRESS, onProgress);
+    prefetch?.cancel?.();
+  }
 
   let usedRecommendedDisplayCIELabValue = true;
-  results.segMetadata.data.forEach((data, i) => {
+  const resultsTyped = results as {
+    segMetadata: { data: { rgba?: number[]; RecommendedDisplayCIELabValue?: number[] }[] };
+  };
+  resultsTyped.segMetadata.data.forEach((data, i) => {
     if (i > 0) {
       data.rgba = data.RecommendedDisplayCIELabValue;
 
@@ -242,6 +557,17 @@ async function _loadSegments({
   }
 
   Object.assign(segDisplaySet, results);
+
+  const labelMapImageIds = (results as { labelMapImages?: { imageId: string }[][] })
+    .labelMapImages?.flat()
+    .map(image => image.imageId);
+
+  log.debug(SEG_LOAD_LOG_PREFIX, 'SEG parse complete', {
+    SOPInstanceUID: segDisplaySet.SOPInstanceUID,
+    labelMapImageCount: labelMapImageIds?.length ?? 0,
+    labelMapImageIds,
+    segmentIndices: Object.keys(segDisplaySet.segments || {}),
+  });
 }
 
 function _segmentationExists(segDisplaySet) {

extensions/cornerstone-dicom-seg/src/index.tsx

@@ -4,6 +4,7 @@ import React from 'react';
 import getSopClassHandlerModule from './getSopClassHandlerModule';
 import getHangingProtocolModule from './getHangingProtocolModule';
 import getCommandsModule from './commandsModule';
+import getCustomizationModule from './getCustomizationModule';
 import { getToolbarModule } from './getToolbarModule';
 
 const Component = React.lazy(() => {
@@ -28,6 +29,7 @@ const extension = {
    */
   id,
   getCommandsModule,
+  getCustomizationModule,
   getToolbarModule,
   getViewportModule({ servicesManager, extensionManager, commandsManager }) {
     const ExtendedOHIFCornerstoneSEGViewport = props => {

extensions/cornerstone-dicom-seg/src/utils/segLocalImageIds.ts

@@ -0,0 +1,32 @@
+export function isLocalSchemeImageId(imageId: string): boolean {
+  return /^(wadouri:|dicomfile:|dicomweb:)/.test(imageId);
+}
+
+export function stripFrameFromImageId(imageId: string): string {
+  const queryIndex = imageId.indexOf('?');
+  if (queryIndex === -1) {
+    return imageId;
+  }
+
+  const basePath = imageId.slice(0, queryIndex);
+  const rebuiltQuery = imageId
+    .slice(queryIndex + 1)
+    .split('&')
+    .filter(param => param.split('=')[0] !== 'frame')
+    .join('&');
+
+  return rebuiltQuery ? `${basePath}?${rebuiltQuery}` : basePath;
+}
+
+export function appendFrameToImageId(baseImageId: string, frame: number): string {
+  const withoutFrame = stripFrameFromImageId(baseImageId);
+  const separator = withoutFrame.includes('?') ? '&' : '?';
+
+  return `${withoutFrame}${separator}frame=${frame}`;
+}
+
+export function getFrameIndexFromImageId(imageId: string): number {
+  const frameMatch = imageId.match(/(?:&|\?)frame=(\d+)/);
+
+  return frameMatch ? Number(frameMatch[1]) : 1;
+}

extensions/cornerstone-dicom-seg/src/utils/segmentationConfig.ts

@@ -0,0 +1,100 @@
+export const LABELMAP_SEG_SOP_CLASS_UID = '1.2.840.10008.5.1.4.1.1.66.7';
+export const BITMAP_SEG_SOP_CLASS_UID = '1.2.840.10008.5.1.4.1.1.66.4';
+/** RLE Lossless — OHIF default SEG store transfer syntax. */
+export const DEFAULT_SEG_STORE_TRANSFER_SYNTAX_UID = '1.2.840.10008.1.2.5';
+/** OHIF default SEG store mode (Label Map Segmentation SOP Class). */
+export const DEFAULT_SEG_STORE_MODE = 'labelmap' as const;
+
+export type SegmentationMode = 'labelmap' | 'bitmap';
+
+/**
+ * Per-data-source overrides for the SEG store defaults. A data source may set
+ * these under `configuration.segmentation.store` to override the values coming
+ * from the `segmentation.store.*` customizations. Different back ends support
+ * different SEG encodings, so the data source is allowed to win over the
+ * app-wide customization default.
+ */
+export type SegmentationStoreOverride = {
+  defaultMode?: SegmentationMode;
+  transferSyntaxUID?: string;
+};
+
+type SegmentationCustomizationReader = {
+  getCustomization: (customizationId: string) => unknown;
+};
+
+function getStoreDefaultMode(
+  customizationService?: SegmentationCustomizationReader,
+  override?: SegmentationStoreOverride
+): SegmentationMode {
+  const mode =
+    override?.defaultMode ??
+    (customizationService?.getCustomization('segmentation.store.defaultMode') as
+      | SegmentationMode
+      | undefined) ??
+    DEFAULT_SEG_STORE_MODE;
+
+  return mode === 'bitmap' ? 'bitmap' : 'labelmap';
+}
+
+function getStoreTransferSyntaxUID(
+  customizationService?: SegmentationCustomizationReader,
+  override?: SegmentationStoreOverride
+): string {
+  return (
+    override?.transferSyntaxUID ??
+    (customizationService?.getCustomization(
+      'segmentation.store.transferSyntaxUID'
+    ) as string | undefined) ??
+    DEFAULT_SEG_STORE_TRANSFER_SYNTAX_UID
+  );
+}
+
+/**
+ * Resolves the parser type for loading a DICOM SEG instance.
+ * Uses the instance SOP Class UID when it is a known SEG class; otherwise falls back to store defaultMode.
+ */
+export function getSegmentationParserType(
+  sopClassUID: string | undefined,
+  customizationService?: SegmentationCustomizationReader
+): SegmentationMode {
+  if (sopClassUID === LABELMAP_SEG_SOP_CLASS_UID) {
+    return 'labelmap';
+  }
+
+  if (sopClassUID === BITMAP_SEG_SOP_CLASS_UID) {
+    return 'bitmap';
+  }
+
+  return getStoreDefaultMode(customizationService);
+}
+
+/**
+ * Options passed to @cornerstonejs/adapters generateSegmentation when exporting or storing SEG.
+ *
+ * Defaults to **Label Map + RLE Lossless**. Customizations (or per-data-source
+ * `configuration.segmentation.store`) are only needed to opt into bitmap and/or
+ * uncompressed Explicit VR Little Endian.
+ */
+export function getSegmentationSaveOptions(
+  customizationService?: SegmentationCustomizationReader,
+  override?: SegmentationStoreOverride
+): {
+  sopClassUID: string;
+  transferSyntaxUID: string;
+  transferSyntaxUid: string;
+} {
+  const defaultMode = getStoreDefaultMode(customizationService, override);
+  const sopClassUID =
+    defaultMode === 'bitmap' ? BITMAP_SEG_SOP_CLASS_UID : LABELMAP_SEG_SOP_CLASS_UID;
+  const transferSyntaxUID = getStoreTransferSyntaxUID(
+    customizationService,
+    override
+  );
+
+  return {
+    sopClassUID,
+    transferSyntaxUID,
+    transferSyntaxUid: transferSyntaxUID,
+  };
+}

extensions/cornerstone-dicom-seg/src/viewports/OHIFCornerstoneSEGViewport.tsx

@@ -95,10 +95,13 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
   };
 
   const getCornerstoneViewport = useCallback(() => {
+    // Stack uses the referenced series (data[0]); SEG is applied as an overlay (data[1]).
+    // Passing only the SEG display set leaves the stack with derived labelmap imageIds,
+    // which are not displayable without the underlying grayscale series.
     return (
       <OHIFCornerstoneViewport
         {...props}
-        displaySets={[segDisplaySet]}
+        displaySets={[referencedDisplaySet, segDisplaySet]}
         viewportOptions={{
           viewportType: viewportOptions.viewportType,
           toolGroupId: toolGroupId,
@@ -111,7 +114,14 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
         }}
       />
     );
-  }, [viewportId, segDisplaySet, toolGroupId, props, viewportOptions]);
+  }, [
+    viewportId,
+    segDisplaySet,
+    referencedDisplaySet,
+    toolGroupId,
+    props,
+    viewportOptions,
+  ]);
 
   useEffect(() => {
     if (segIsLoading) {

extensions/cornerstone-dicom-sr/.webpack/webpack.prod.js

@@ -1,8 +1,8 @@
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 const { merge } = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.base.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
+const MiniCssExtractPlugin = webpack.CssExtractRspackPlugin;
 
 const pkg = require('./../package.json');
 
@@ -36,9 +36,11 @@ module.exports = (env, argv) => {
       sideEffects: true,
     },
     output: {
+      library: {
+        name: 'ohif-extension-cornerstone-dicom-sr',
+        type: 'umd',
+      },
       path: ROOT_DIR,
-      library: 'ohif-extension-cornerstone-dicom-sr',
-      libraryTarget: 'umd',
       filename: pkg.main,
     },
     externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],

extensions/cornerstone-dicom-sr/CHANGELOG.md

@@ -3,6 +3,631 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+
+### Bug Fixes
+
+* ohif tests to run with cornerstone 3d 5.0 ([#6043](https://github.com/OHIF/Viewers/issues/6043)) ([6dd150d](https://github.com/OHIF/Viewers/commit/6dd150d401ad73d60632a23378b7dfd4b5142690))
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+
+### Bug Fixes
+
+* Use newer ONNX version and load without errors ([#5854](https://github.com/OHIF/Viewers/issues/5854)) ([cc5dc20](https://github.com/OHIF/Viewers/commit/cc5dc201649bcbfb4cfad21141dbd56000d30f53)), closes [#5875](https://github.com/OHIF/Viewers/issues/5875) [#5884](https://github.com/OHIF/Viewers/issues/5884) [#5886](https://github.com/OHIF/Viewers/issues/5886) [#5893](https://github.com/OHIF/Viewers/issues/5893) [#5874](https://github.com/OHIF/Viewers/issues/5874) [#5865](https://github.com/OHIF/Viewers/issues/5865)
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+
+### Bug Fixes
+
+* A couple of changes to enable cs3d integration build ([#5944](https://github.com/OHIF/Viewers/issues/5944)) ([f6bbd5c](https://github.com/OHIF/Viewers/commit/f6bbd5c779e4692dc47c93327a890661b8dcc174))
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+
+### Reverts
+
+* rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID ([#5943](https://github.com/OHIF/Viewers/issues/5943)) ([0e933c2](https://github.com/OHIF/Viewers/commit/0e933c256e07b7cda35ed2ba3cfb1ab35d895d57))
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+
+### Bug Fixes
+
+* **segmentation:** restrict overlay segmentation menu to same frame of reference as viewport background display set  ([#5900](https://github.com/OHIF/Viewers/issues/5900)) ([b9029ef](https://github.com/OHIF/Viewers/commit/b9029ef6f8d63a0e36ec929310c1c5ad3f563ef8))
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+
+### Bug Fixes
+
+* **SR:** Added support for spline and live wire SR items. ([#5870](https://github.com/OHIF/Viewers/issues/5870)) ([1d4802c](https://github.com/OHIF/Viewers/commit/1d4802c2a38dd75dca7afca87913e100453c9135))
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+
+### Features
+
+* Add combined build ([#5895](https://github.com/OHIF/Viewers/issues/5895)) ([1df671e](https://github.com/OHIF/Viewers/commit/1df671e9ab67d43f98bf09f6838ddc0a5f220277))
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+
+### Bug Fixes
+
+* **sr-hydration:** enable hydration and arrow navigation for 3D SR measurements ([#5887](https://github.com/OHIF/Viewers/issues/5887)) ([7a38903](https://github.com/OHIF/Viewers/commit/7a38903b1977b1cf0f3a0ba8a4a823fac5e8fdeb))
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+
+### Bug Fixes
+
+* **segmentation:** Display "No description S:{series number} {modality}" for segmentations with no label. ([#5874](https://github.com/OHIF/Viewers/issues/5874)) ([7b5d0ce](https://github.com/OHIF/Viewers/commit/7b5d0ce40e5422ccfce6091ac3d7559586cbe57e))
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+
+### Bug Fixes
+
+* Update CS3D 4.18.2 ([#5837](https://github.com/OHIF/Viewers/issues/5837)) ([5370b93](https://github.com/OHIF/Viewers/commit/5370b9382e7bfddeadd69bab9e653f5f997a6e19))
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+
+### Bug Fixes
+
+* palette color 8 encoded 16 ([#5823](https://github.com/OHIF/Viewers/issues/5823)) ([eeca1f7](https://github.com/OHIF/Viewers/commit/eeca1f7a7b529d1700f5d281a6fd98074547ffe9)), closes [#5813](https://github.com/OHIF/Viewers/issues/5813)
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr

extensions/cornerstone-dicom-sr/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-sr",
-  "version": "3.13.0-beta.15",
+  "version": "3.13.0-beta.125",
   "description": "OHIF extension for an SR Cornerstone Viewport",
   "author": "OHIF",
   "license": "MIT",
@@ -8,9 +8,7 @@
   "main": "dist/ohif-extension-cornerstone-dicom-sr.umd.js",
   "module": "src/index.tsx",
   "engines": {
-    "node": ">=14",
+    "node": ">=24"
-    "npm": ">=6",
-    "yarn": ">=1.16.0"
   },
   "files": [
     "dist",
@@ -19,36 +17,38 @@
   "publishConfig": {
     "access": "public"
   },
-  "keywords": [
-    "ohif-extension"
-  ],
   "scripts": {
     "clean": "shx rm -rf dist",
-    "clean:deep": "yarn run clean && shx rm -rf node_modules",
+    "clean:deep": "pnpm run clean && shx rm -rf node_modules",
-    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development rspack build --config .webpack/webpack.dev.js --watch",
-    "dev:cornerstone": "yarn run dev",
+    "dev:cornerstone": "pnpm run dev",
-    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production rspack build --config .webpack/webpack.prod.js",
-    "build:package-1": "yarn run build",
+    "build:package-1": "pnpm run build",
-    "start": "yarn run dev",
+    "start": "pnpm run dev",
     "test:unit": "jest --watchAll",
     "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
   },
   "peerDependencies": {
-    "@ohif/core": "3.13.0-beta.15",
+    "@ohif/core": "workspace:*",
-    "@ohif/extension-cornerstone": "3.13.0-beta.15",
+    "@ohif/extension-cornerstone": "workspace:*",
-    "@ohif/extension-measurement-tracking": "3.13.0-beta.15",
+    "@ohif/ui": "workspace:*",
-    "@ohif/ui": "3.13.0-beta.15",
+    "dcmjs": "0.52.0",
-    "dcmjs": "0.49.4",
     "dicom-parser": "1.8.21",
     "hammerjs": "2.0.8",
     "prop-types": "15.8.1",
     "react": "18.3.1"
   },
   "dependencies": {
-    "@babel/runtime": "7.28.2",
+    "@babel/runtime": "7.29.7",
-    "@cornerstonejs/adapters": "4.15.29",
+    "@cornerstonejs/adapters": "5.4.17",
-    "@cornerstonejs/core": "4.15.29",
+    "@cornerstonejs/core": "5.4.17",
-    "@cornerstonejs/tools": "4.15.29",
+    "@cornerstonejs/tools": "5.4.17",
     "classnames": "2.5.1"
-  }
+  },
+  "devDependencies": {
+    "cross-env": "7.0.3"
+  },
+  "keywords": [
+    "ohif-extension"
+  ]
 }

extensions/cornerstone-dicom-sr/src/commandsModule.ts

@@ -1,14 +1,11 @@
 import { metaData } from '@cornerstonejs/core';
 
-import OHIF, { DicomMetadataStore, utils } from '@ohif/core';
+import OHIF from '@ohif/core';
-import dcmjs from 'dcmjs';
 import { adaptersSR } from '@cornerstonejs/adapters';
 
 import getFilteredCornerstoneToolState from './utils/getFilteredCornerstoneToolState';
 import hydrateStructuredReport from './utils/hydrateStructuredReport';
 
-const { downloadBlob } = utils;
-
 const { MeasurementReport } = adaptersSR.Cornerstone3D;
 const { log } = OHIF;
 
@@ -75,24 +72,8 @@ const commandsModule = (props: withAppTypes) => {
     /**
      *
      * @param measurementData An array of measurements from the measurements service
-     * @param additionalFindingTypes toolTypes that should be stored with labels as Findings
-     * @param options Naturalized DICOM JSON headers to merge into the displaySet.
-     * as opposed to Finding Sites.
      * that you wish to serialize.
-     */
+     * @param dataSource The data source name ('download', 'copyToClipboard', or a named data source).
-    downloadReport: ({ measurementData, additionalFindingTypes, options = {} }) => {
-      const srDataset = _generateReport(measurementData, additionalFindingTypes, options);
-      const reportBlob = dcmjs.data.datasetToBlob(srDataset);
-
-      //Create a URL for the binary.
-      downloadBlob(reportBlob, { filename: 'dicom-sr.dcm' });
-    },
-
-    /**
-     *
-     * @param measurementData An array of measurements from the measurements service
-     * that you wish to serialize.
-     * @param dataSource The dataSource that you wish to use to persist the data.
      * @param additionalFindingTypes toolTypes that should be stored with labels as Findings
      * @param options Naturalized DICOM JSON headers to merge into the displaySet.
      * @return The naturalized report
@@ -103,23 +84,30 @@ const commandsModule = (props: withAppTypes) => {
       additionalFindingTypes,
       options = {},
     }) => {
-      // Use the @cornerstonejs adapter for converting to/from DICOM
-      // But it is good enough for now whilst we only have cornerstone as a datasource.
       log.info('[DICOMSR] storeMeasurements');
 
-      if (!dataSource || !dataSource.store || !dataSource.store.dicom) {
+      const storeFn = commandsManager.runCommand('createStoreFunction', {
-        log.error('[DICOMSR] datasource has no dataSource.store.dicom endpoint!');
+        dataSource,
+        defaultFileName: 'dicom-sr.dcm',
+      });
+
+      if (!storeFn) {
+        log.error('[DICOMSR] No valid store for dataSource:', dataSource);
         return Promise.reject({});
       }
 
       try {
-        const naturalizedReport = _generateReport(measurementData, additionalFindingTypes, options);
+        const naturalizedReport = _generateReport(
+          measurementData,
+          additionalFindingTypes,
+          options
+        );
 
-        const { StudyInstanceUID, ContentSequence } = naturalizedReport;
+        const { ContentSequence } = naturalizedReport;
         // The content sequence has 5 or more elements, of which
         // the `[4]` element contains the annotation data, so this is
         // checking that there is some annotation data present.
-        if (!ContentSequence?.[4].ContentSequence?.length) {
+        if (!ContentSequence?.[4]?.ContentSequence?.length) {
           console.log('naturalizedReport missing imaging content', naturalizedReport);
           throw new Error('Invalid report, no content');
         }
@@ -128,22 +116,12 @@ const commandsModule = (props: withAppTypes) => {
         }
 
         const onBeforeDicomStore = customizationService.getCustomization('onBeforeDicomStore');
-
         let dicomDict;
         if (typeof onBeforeDicomStore === 'function') {
           dicomDict = onBeforeDicomStore({ dicomDict, measurementData, naturalizedReport });
         }
 
-        await dataSource.store.dicom(naturalizedReport, null, dicomDict);
+        await storeFn(naturalizedReport, { measurementData, dicomDict });
-
-        if (StudyInstanceUID) {
-          dataSource.deleteStudyMetadataPromise(StudyInstanceUID);
-        }
-
-        // The "Mode" route listens for DicomMetadataStore changes
-        // When a new instance is added, it listens and
-        // automatically calls makeDisplaySets
-        DicomMetadataStore.addInstances([naturalizedReport], true);
 
         return naturalizedReport;
       } catch (error) {
@@ -166,7 +144,6 @@ const commandsModule = (props: withAppTypes) => {
   };
 
   const definitions = {
-    downloadReport: actions.downloadReport,
     storeMeasurements: actions.storeMeasurements,
     hydrateStructuredReport: actions.hydrateStructuredReport,
   };

extensions/cornerstone-dicom-sr/src/getSopClassHandlerModule.ts

@@ -200,8 +200,13 @@ async function _load(
   srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
   srDisplaySet.isLoaded = true;
 
-  /** Check currently added displaySets and add measurements if the sources exist */
+  /** Check currently added displaySets and add measurements if the sources exist.
-  displaySetService.activeDisplaySets.forEach(activeDisplaySet => {
+   *  Walk the SR's study first in default series order (not load order) so SCOORD3D
+   *  FrameOfReference matching picks a stable series when several share FOR. */
+  const displaySetsForSRPass = utils.sortDisplaySetsCopy(displaySetService.activeDisplaySets, {
+    studyInstanceUIDFirst: srDisplaySet.StudyInstanceUID,
+  });
+  displaySetsForSRPass.forEach(activeDisplaySet => {
     _checkIfCanAddMeasurementsToDisplaySet(
       srDisplaySet,
       activeDisplaySet,
@@ -637,16 +642,35 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
   NUMContentItems.forEach(item => {
     const { ConceptNameCodeSequence, ContentSequence, MeasuredValueSequence } = item;
 
-    // Handle spatial reference ONLY if ContentSequence exists
+    // Handle spatial reference ONLY if ContentSequence exists.
+    // ContentSequence may be a scalar SCOORD or an array when additional named
+    // SCOORDs (e.g. control points) are nested alongside the primary geometry.
+    // Pick the primary geometry entry: prefer the SCOORD without a
+    // ConceptNameCodeSequence (plain polyline), falling back to the first SCOORD.
     if (ContentSequence) {
-      const { ValueType } = ContentSequence;
+      const scoordItem = Array.isArray(ContentSequence)
+        ? (ContentSequence.find(
+            cs =>
+              (cs.ValueType === 'SCOORD' || cs.ValueType === 'SCOORD3D') &&
+              !cs.ConceptNameCodeSequence
+          ) ?? ContentSequence.find(cs => cs.ValueType === 'SCOORD' || cs.ValueType === 'SCOORD3D'))
+        : ContentSequence;
+
+      if (!scoordItem) {
+        console.warn(
+          'ContentSequence array contains no SCOORD or SCOORD3D entry, skipping annotation.'
+        );
+        return;
+      }
+
+      const { ValueType } = scoordItem;
 
       if (ValueType !== 'SCOORD' && ValueType !== 'SCOORD3D') {
         console.warn(`Graphic ${ValueType} not currently supported, skipping annotation.`);
         return;
       }
 
-      const coords = _getCoordsFromSCOORDOrSCOORD3D(ContentSequence);
+      const coords = _getCoordsFromSCOORDOrSCOORD3D(scoordItem);
 
       if (coords) {
         measurement.coords.push(coords);

extensions/cornerstone-dicom-sr/src/tools/DICOMSRDisplayTool.ts

@@ -69,7 +69,12 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
       trackingUniqueIdentifiers.includes(annotation.data?.TrackingUniqueIdentifier)
     );
 
-    if (!viewport._actors?.size) {
+    const hasActors =
+      typeof viewport.getActors === 'function'
+        ? viewport.getActors().length > 0
+        : Boolean(viewport._actors?.size);
+
+    if (!hasActors) {
       return;
     }
 

extensions/cornerstone-dicom-sr/src/utils/hydrateStructuredReport.ts

@@ -80,7 +80,7 @@ export default function hydrateStructuredReport(
     const { ReferencedSOPInstanceUID, imageId, frameNumber = 1 } = measurement;
     const key = `${ReferencedSOPInstanceUID}:${frameNumber}`;
 
-    if (!sopInstanceUIDToImageId[key]) {
+    if (imageId && !sopInstanceUIDToImageId[key]) {
       sopInstanceUIDToImageId[key] = imageId;
     }
   });
@@ -118,41 +118,17 @@ export default function hydrateStructuredReport(
     }
   });
 
-  // Set the series touched as tracked.
-  const imageIds = [];
-
-  // TODO: notification if no hydratable?
-  Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
-    const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
-
-    toolDataForAnnotationType.forEach(toolData => {
-      // Add the measurement to toolState
-      // dcmjs and Cornerstone3D has structural defect in supporting multi-frame
-      // files, and looking up the imageId from sopInstanceUIDToImageId results
-      // in the wrong value.
-      const frameNumber = toolData.annotation.data?.frameNumber || 1;
-      const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
-
-      if (!imageIds.includes(imageId)) {
-        imageIds.push(imageId);
-      }
-    });
-  });
-
   let targetStudyInstanceUID;
   const SeriesInstanceUIDs = [];
 
-  for (let i = 0; i < imageIds.length; i++) {
+  // Set the series touched as tracked.
-    const imageId = imageIds[i];
+  const imageIds = getImageIds(hydratableMeasurementsInSR, sopInstanceUIDToImageId);
-    if (!imageId) {
-      continue;
-    }
-    const { SeriesInstanceUID, StudyInstanceUID } = metaData.get('instance', imageId);
 
+  for (const imageId of imageIds) {
+    const { SeriesInstanceUID, StudyInstanceUID } = metaData.get('instance', imageId);
     if (!SeriesInstanceUIDs.includes(SeriesInstanceUID)) {
       SeriesInstanceUIDs.push(SeriesInstanceUID);
     }
-
     if (!targetStudyInstanceUID) {
       targetStudyInstanceUID = StudyInstanceUID;
     } else if (targetStudyInstanceUID !== StudyInstanceUID) {
@@ -160,6 +136,38 @@ export default function hydrateStructuredReport(
     }
   }
 
+  // For 3d annotations there are no image IDs,
+  // so we need to find the display sets by frame of reference to get the SeriesInstanceUIDs
+  const frameOfReferenceUIDs = getFrameOfReferenceUIDs(
+    hydratableMeasurementsInSR,
+    sopInstanceUIDToImageId
+  );
+  const displaySetsByFrameOfReferenceUID = new Map();
+
+  for (const FrameOfReferenceUID of frameOfReferenceUIDs) {
+    const displaySetsFOR = displaySetService.getDisplaySetsBy(
+      ds => ds.FrameOfReferenceUID === FrameOfReferenceUID && !ds.isDerivedDisplaySet
+    );
+    const ds = getReferencedDisplaySet(
+      displaySet,
+      displaySetsFOR,
+      FrameOfReferenceUID,
+      displaySetService
+    );
+    if (!ds) {
+      continue;
+    }
+    displaySetsByFrameOfReferenceUID.set(FrameOfReferenceUID, ds);
+    if (!SeriesInstanceUIDs.includes(ds.SeriesInstanceUID)) {
+      SeriesInstanceUIDs.push(ds.SeriesInstanceUID);
+    }
+    if (!targetStudyInstanceUID) {
+      targetStudyInstanceUID = ds.StudyInstanceUID;
+    } else if (targetStudyInstanceUID !== ds.StudyInstanceUID) {
+      console.warn('NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES.');
+    }
+  }
+
   /**
    * Gets reference data for what frame of reference and the referenced
    * image id, or for 3d measurements, the volumeId to apply this annotation to.
@@ -173,7 +181,7 @@ export default function hydrateStructuredReport(
     const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
 
     if (!imageId) {
-      return getReferenceData3D(toolData, servicesManager);
+      return getReferenceData3D(toolData, servicesManager, displaySetsByFrameOfReferenceUID);
     }
 
     const instance = metaData.get('instance', imageId);
@@ -196,7 +204,7 @@ export default function hydrateStructuredReport(
     toolDataForAnnotationType.forEach(toolData => {
       toolData.uid = guid();
       const referenceData = getReferenceData(toolData);
-      const { imageId } = referenceData;
+      const { referencedImageId } = referenceData;
 
       const annotation = {
         annotationUID: toolData.annotation.annotationUID,
@@ -241,8 +249,8 @@ export default function hydrateStructuredReport(
         locking.setAnnotationLocked(newAnnotationUID, true);
       }
 
-      if (imageId && !imageIds.includes(imageId)) {
+      if (referencedImageId && !imageIds.includes(referencedImageId)) {
-        imageIds.push(imageId);
+        imageIds.push(referencedImageId);
       }
     });
   });
@@ -255,32 +263,120 @@ export default function hydrateStructuredReport(
   };
 }
 
+/**
+ * Gets the unique imageIds from hydratable measurements that have an imageId reference
+ * (i.e., 2D/SCOORD annotations).
+ */
+function getImageIds(hydratableMeasurementsInSR, sopInstanceUIDToImageId): string[] {
+  const imageIds: string[] = [];
+  Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
+    const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
+
+    toolDataForAnnotationType.forEach(toolData => {
+      // Add the measurement to toolState
+      // dcmjs and Cornerstone3D has structural defect in supporting multi-frame
+      // files, and looking up the imageId from sopInstanceUIDToImageId results
+      // in the wrong value.
+      const frameNumber = toolData.annotation.data?.frameNumber || 1;
+      const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
+
+      if (imageId && !imageIds.includes(imageId)) {
+        imageIds.push(imageId);
+      }
+    });
+  });
+  return imageIds;
+}
+
+/**
+ * Gets the unique FrameOfReferenceUIDs from hydratable measurements that have no imageId reference
+ * (i.e., 3D/SCOORD3D annotations). This excludes annotations handled by the getImageIds function.
+ */
+function getFrameOfReferenceUIDs(hydratableMeasurementsInSR, sopInstanceUIDToImageId): string[] {
+  const frameOfReferenceUIDs: string[] = [];
+
+  Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
+    const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
+    toolDataForAnnotationType.forEach(toolData => {
+      const frameNumber = toolData.annotation.data?.frameNumber || 1;
+      const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
+
+      if (!imageId) {
+        const { FrameOfReferenceUID } = toolData.annotation.metadata;
+        if (FrameOfReferenceUID && !frameOfReferenceUIDs.includes(FrameOfReferenceUID)) {
+          frameOfReferenceUIDs.push(FrameOfReferenceUID);
+        }
+      }
+    });
+  });
+  return frameOfReferenceUIDs;
+}
+
 /**
  * For 3d annotations, there are often several display sets which could
  * be used to display the annotation.  Choose the first annotation with the
  * same frame of reference that is reconstructable, or the first display set
  * otherwise.
  */
-function chooseDisplaySet(displaySets, annotation) {
+function chooseDisplaySet(displaySets, reference) {
   if (!displaySets?.length) {
-    console.warn('No display set found for', annotation);
+    console.warn('No display set found for', reference);
     return;
   }
-  if (displaySets.length === 1) {
+  const sortedDisplaySets = OHIF.utils.sortDisplaySetsCopy(displaySets);
-    return displaySets[0];
+  if (sortedDisplaySets.length === 1) {
+    return sortedDisplaySets[0];
   }
-  const volumeDs = displaySets.find(ds => ds.isReconstructable);
+  const volumeDs = sortedDisplaySets.find(ds => ds.isReconstructable);
   if (volumeDs) {
     return volumeDs;
   }
-  return displaySets[0];
+  return sortedDisplaySets[0];
+}
+
+/**
+ * SCOORD3D only identifies a frame of reference, so many series can be valid
+ * candidates. The SR loader has already selected and recorded a stable display
+ * set for each measurement. Reuse that selection during hydration so the
+ * viewport series and annotation volume cannot depend on display-set load order.
+ */
+function getReferencedDisplaySet(
+  srDisplaySet,
+  displaySets,
+  FrameOfReferenceUID,
+  displaySetService
+) {
+  const referencedDisplaySetInstanceUID = srDisplaySet.measurements?.find(measurement =>
+    measurement.coords?.some(
+      coord =>
+        coord.ValueType === 'SCOORD3D' &&
+        coord.ReferencedFrameOfReferenceSequence === FrameOfReferenceUID
+    )
+  )?.displaySetInstanceUID;
+
+  const referencedDisplaySet = referencedDisplaySetInstanceUID
+    ? displaySetService.getDisplaySetByUID(referencedDisplaySetInstanceUID)
+    : undefined;
+
+  if (
+    referencedDisplaySet?.FrameOfReferenceUID === FrameOfReferenceUID &&
+    !referencedDisplaySet.isDerivedDisplaySet
+  ) {
+    return referencedDisplaySet;
+  }
+
+  return chooseDisplaySet(displaySets, FrameOfReferenceUID);
 }
 
 /**
  * Gets the additional reference data appropriate for a 3d reference.
  * This will choose a volume id, frame of reference and a plane restriction.
  */
-function getReferenceData3D(toolData, servicesManager: Types.ServicesManager) {
+function getReferenceData3D(
+  toolData,
+  servicesManager: Types.ServicesManager,
+  displaySetsByFrameOfReferenceUID = new Map()
+) {
   const { FrameOfReferenceUID } = toolData.annotation.metadata;
   const { points } = toolData.annotation.data.handles;
   const { displaySetService } = servicesManager.services;
@@ -292,7 +388,9 @@ function getReferenceData3D(toolData, servicesManager: Types.ServicesManager) {
       FrameOfReferenceUID,
     };
   }
-  const ds = chooseDisplaySet(displaySetsFOR, toolData.annotation);
+  const ds =
+    displaySetsByFrameOfReferenceUID.get(FrameOfReferenceUID) ||
+    chooseDisplaySet(displaySetsFOR, toolData.annotation);
   const cameraView = chooseCameraView(ds, points);
 
   const viewReference = {

extensions/cornerstone-dynamic-volume/.webpack/webpack.prod.js

@@ -1,8 +1,8 @@
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 const { merge } = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.base.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
+const MiniCssExtractPlugin = webpack.CssExtractRspackPlugin;
 
 const pkg = require('./../package.json');
 
@@ -35,9 +35,11 @@ module.exports = (env, argv) => {
       sideEffects: true,
     },
     output: {
+      library: {
+        name: 'ohif-extension-cornerstone',
+        type: 'umd',
+      },
       path: ROOT_DIR,
-      library: 'ohif-extension-cornerstone',
-      libraryTarget: 'umd',
       filename: pkg.main,
     },
     externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],

extensions/cornerstone-dynamic-volume/CHANGELOG.md

@@ -3,6 +3,619 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+
+### Bug Fixes
+
+* ohif tests to run with cornerstone 3d 5.0 ([#6043](https://github.com/OHIF/Viewers/issues/6043)) ([6dd150d](https://github.com/OHIF/Viewers/commit/6dd150d401ad73d60632a23378b7dfd4b5142690))
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+
+### Bug Fixes
+
+* Use newer ONNX version and load without errors ([#5854](https://github.com/OHIF/Viewers/issues/5854)) ([cc5dc20](https://github.com/OHIF/Viewers/commit/cc5dc201649bcbfb4cfad21141dbd56000d30f53)), closes [#5875](https://github.com/OHIF/Viewers/issues/5875) [#5884](https://github.com/OHIF/Viewers/issues/5884) [#5886](https://github.com/OHIF/Viewers/issues/5886) [#5893](https://github.com/OHIF/Viewers/issues/5893) [#5874](https://github.com/OHIF/Viewers/issues/5874) [#5865](https://github.com/OHIF/Viewers/issues/5865)
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+
+### Bug Fixes
+
+* A couple of changes to enable cs3d integration build ([#5944](https://github.com/OHIF/Viewers/issues/5944)) ([f6bbd5c](https://github.com/OHIF/Viewers/commit/f6bbd5c779e4692dc47c93327a890661b8dcc174))
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+
+### Features
+
+* Add combined build ([#5895](https://github.com/OHIF/Viewers/issues/5895)) ([1df671e](https://github.com/OHIF/Viewers/commit/1df671e9ab67d43f98bf09f6838ddc0a5f220277))
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+
+### Bug Fixes
+
+* **segmentation:** Display "No description S:{series number} {modality}" for segmentations with no label. ([#5874](https://github.com/OHIF/Viewers/issues/5874)) ([7b5d0ce](https://github.com/OHIF/Viewers/commit/7b5d0ce40e5422ccfce6091ac3d7559586cbe57e))
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+
+### Bug Fixes
+
+* Update CS3D 4.18.2 ([#5837](https://github.com/OHIF/Viewers/issues/5837)) ([5370b93](https://github.com/OHIF/Viewers/commit/5370b9382e7bfddeadd69bab9e653f5f997a6e19))
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+
+### Bug Fixes
+
+* palette color 8 encoded 16 ([#5823](https://github.com/OHIF/Viewers/issues/5823)) ([eeca1f7](https://github.com/OHIF/Viewers/commit/eeca1f7a7b529d1700f5d281a6fd98074547ffe9)), closes [#5813](https://github.com/OHIF/Viewers/issues/5813)
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume

extensions/cornerstone-dynamic-volume/package.json

@@ -1,12 +1,15 @@
 {
   "name": "@ohif/extension-cornerstone-dynamic-volume",
-  "version": "3.13.0-beta.15",
+  "version": "3.13.0-beta.125",
   "description": "OHIF extension for 4D volumes data",
   "author": "OHIF",
   "license": "MIT",
   "repository": "OHIF/Viewers",
   "main": "dist/ohif-extension-cornerstone-dynamic-volume.umd.js",
   "module": "src/index.ts",
+  "engines": {
+    "node": ">=24"
+  },
   "exports": {
     ".": "./src/index.ts",
     "./types": "./src/types/index.ts"
@@ -19,31 +22,34 @@
     "access": "public"
   },
   "scripts": {
-    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development rspack build --config .webpack/webpack.dev.js --watch",
-    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production rspack build --config .webpack/webpack.prod.js",
-    "build:package": "yarn run build",
+    "build:package": "pnpm run build",
     "clean": "shx rm -rf dist",
-    "clean:deep": "yarn run clean && shx rm -rf node_modules",
+    "clean:deep": "pnpm run clean && shx rm -rf node_modules",
-    "start": "yarn run dev",
+    "start": "pnpm run dev",
     "test:unit": "jest --watchAll",
     "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
   },
   "peerDependencies": {
-    "@ohif/core": "3.13.0-beta.15",
+    "@ohif/core": "workspace:*",
-    "@ohif/extension-cornerstone": "3.13.0-beta.15",
+    "@ohif/extension-cornerstone": "workspace:*",
-    "@ohif/extension-default": "3.13.0-beta.15",
+    "@ohif/extension-default": "workspace:*",
-    "@ohif/i18n": "3.13.0-beta.15",
+    "@ohif/i18n": "workspace:*",
-    "@ohif/ui": "3.13.0-beta.15",
+    "@ohif/ui": "workspace:*",
-    "dcmjs": "0.49.4",
+    "dcmjs": "0.52.0",
     "dicom-parser": "1.8.21",
     "hammerjs": "2.0.8",
     "prop-types": "15.8.1",
     "react": "18.3.1"
   },
   "dependencies": {
-    "@babel/runtime": "7.28.2",
+    "@babel/runtime": "7.29.7",
-    "@cornerstonejs/core": "4.15.29",
+    "@cornerstonejs/core": "5.4.17",
-    "@cornerstonejs/tools": "4.15.29",
+    "@cornerstonejs/tools": "5.4.17",
     "classnames": "2.5.1"
+  },
+  "devDependencies": {
+    "cross-env": "7.0.3"
   }
 }

extensions/cornerstone/.webpack/webpack.prod.js

@@ -1,8 +1,8 @@
-const webpack = require('webpack');
+const webpack = require('@rspack/core');
 const { merge } = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.base.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
+const MiniCssExtractPlugin = webpack.CssExtractRspackPlugin;
 
 const pkg = require('./../package.json');
 
@@ -35,9 +35,11 @@ module.exports = (env, argv) => {
       sideEffects: true,
     },
     output: {
+      library: {
+        name: 'ohif-extension-cornerstone',
+        type: 'umd',
+      },
       path: ROOT_DIR,
-      library: 'ohif-extension-cornerstone',
-      libraryTarget: 'umd',
       filename: pkg.main,
     },
     externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,676 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [3.13.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.88...v3.13.0-beta.89) (2026-06-10)
+
+
+### Bug Fixes
+
+* ohif tests to run with cornerstone 3d 5.0 ([#6043](https://github.com/OHIF/Viewers/issues/6043)) ([6dd150d](https://github.com/OHIF/Viewers/commit/6dd150d401ad73d60632a23378b7dfd4b5142690))
+
+
+
+
+
+# [3.13.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.87...v3.13.0-beta.88) (2026-06-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.86...v3.13.0-beta.87) (2026-05-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.85...v3.13.0-beta.86) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.84...v3.13.0-beta.85) (2026-05-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.83...v3.13.0-beta.84) (2026-05-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.82...v3.13.0-beta.83) (2026-05-26)
+
+
+### Bug Fixes
+
+* **segmentation:** restore navigation for duplicated contour segments ([#6038](https://github.com/OHIF/Viewers/issues/6038)) ([0c1ca6b](https://github.com/OHIF/Viewers/commit/0c1ca6b04a6c1aef478c7a7d9f360f9b9c50f188))
+
+
+
+
+
+# [3.13.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.81...v3.13.0-beta.82) (2026-05-22)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.80...v3.13.0-beta.81) (2026-05-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.79...v3.13.0-beta.80) (2026-05-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.78...v3.13.0-beta.79) (2026-05-19)
+
+
+### Bug Fixes
+
+* **seg:** prevent viewport orientation change when loading SEG in manual grid layout ([#6021](https://github.com/OHIF/Viewers/issues/6021)) ([95251ab](https://github.com/OHIF/Viewers/commit/95251ab6709934e4ef59931379f8d9d7629f87b2))
+
+
+
+
+
+# [3.13.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.77...v3.13.0-beta.78) (2026-05-19)
+
+
+### Bug Fixes
+
+* **measurements:** read displayName in SplineROI and PlanarFreehandROI reports ([#5908](https://github.com/OHIF/Viewers/issues/5908)) ([27af682](https://github.com/OHIF/Viewers/commit/27af6821b56f2c5be3a5d4ce38d05be6fbce68f4))
+
+
+
+
+
+# [3.13.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.76...v3.13.0-beta.77) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.75...v3.13.0-beta.76) (2026-05-19)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.74...v3.13.0-beta.75) (2026-05-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.73...v3.13.0-beta.74) (2026-05-15)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.72...v3.13.0-beta.73) (2026-05-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.71...v3.13.0-beta.72) (2026-05-12)
+
+
+### Bug Fixes
+
+* **measurement-tracking:** restore tracked state on undo after Delete all ([#5994](https://github.com/OHIF/Viewers/issues/5994)) ([397aa4d](https://github.com/OHIF/Viewers/commit/397aa4d0e361e95dcbd83e0557a9cd84c0b8440a))
+
+
+
+
+
+# [3.13.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.70...v3.13.0-beta.71) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.69...v3.13.0-beta.70) (2026-05-07)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.68...v3.13.0-beta.69) (2026-05-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.67...v3.13.0-beta.68) (2026-05-05)
+
+
+### Bug Fixes
+
+* **ToolGroupService:** Centralize tool binding persistence and provide API to add and remove persisted bindings. ([#5989](https://github.com/OHIF/Viewers/issues/5989)) ([979d619](https://github.com/OHIF/Viewers/commit/979d619f7ccb426beb75d59721b01c98175d5241))
+
+
+
+
+
+# [3.13.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.66...v3.13.0-beta.67) (2026-04-30)
+
+
+### Features
+
+* **ui-next:** Adds toggle state for ToolButton and Crosshair example ([#5914](https://github.com/OHIF/Viewers/issues/5914)) ([691e267](https://github.com/OHIF/Viewers/commit/691e26731f4f3b3957fe81fc051b09c972696cf6))
+
+
+
+
+
+# [3.13.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.65...v3.13.0-beta.66) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.64...v3.13.0-beta.65) (2026-04-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.63...v3.13.0-beta.64) (2026-04-27)
+
+
+### Bug Fixes
+
+* **seg:** prevent segmentations from spreading to all viewports before hydration confirmation in 3D four-up ([#5967](https://github.com/OHIF/Viewers/issues/5967)) ([f8ccf9f](https://github.com/OHIF/Viewers/commit/f8ccf9ff2ea9ab7c38bd427514a8ae87902822a3))
+
+
+
+
+
+# [3.13.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.62...v3.13.0-beta.63) (2026-04-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.61...v3.13.0-beta.62) (2026-04-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.60...v3.13.0-beta.61) (2026-04-23)
+
+
+### Features
+
+* **slice scrollbar:** Integrate ViewportSliceProgressScrollbar with customizations and docs ([#5960](https://github.com/OHIF/Viewers/issues/5960)) ([8fc0dc1](https://github.com/OHIF/Viewers/commit/8fc0dc16e97f3262fdac902ecf2d7c20cb8f78cc))
+
+
+
+
+
+# [3.13.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.59...v3.13.0-beta.60) (2026-04-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.58...v3.13.0-beta.59) (2026-04-16)
+
+
+### Bug Fixes
+
+* Use newer ONNX version and load without errors ([#5854](https://github.com/OHIF/Viewers/issues/5854)) ([cc5dc20](https://github.com/OHIF/Viewers/commit/cc5dc201649bcbfb4cfad21141dbd56000d30f53)), closes [#5875](https://github.com/OHIF/Viewers/issues/5875) [#5884](https://github.com/OHIF/Viewers/issues/5884) [#5886](https://github.com/OHIF/Viewers/issues/5886) [#5893](https://github.com/OHIF/Viewers/issues/5893) [#5874](https://github.com/OHIF/Viewers/issues/5874) [#5865](https://github.com/OHIF/Viewers/issues/5865)
+
+
+
+
+
+# [3.13.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.57...v3.13.0-beta.58) (2026-04-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.56...v3.13.0-beta.57) (2026-04-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.55...v3.13.0-beta.56) (2026-04-10)
+
+
+### Bug Fixes
+
+* A couple of changes to enable cs3d integration build ([#5944](https://github.com/OHIF/Viewers/issues/5944)) ([f6bbd5c](https://github.com/OHIF/Viewers/commit/f6bbd5c779e4692dc47c93327a890661b8dcc174))
+
+
+
+
+
+# [3.13.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.54...v3.13.0-beta.55) (2026-04-10)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.53...v3.13.0-beta.54) (2026-04-08)
+
+
+### Bug Fixes
+
+* **cornerstone:** read FrameOfReferenceUID from display set in viewport service ([#5950](https://github.com/OHIF/Viewers/issues/5950)) ([d219171](https://github.com/OHIF/Viewers/commit/d219171e25caf5a7c575080f63819d6f4fe45016))
+
+
+
+
+
+# [3.13.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.52...v3.13.0-beta.53) (2026-04-06)
+
+
+### Reverts
+
+* rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID ([#5943](https://github.com/OHIF/Viewers/issues/5943)) ([0e933c2](https://github.com/OHIF/Viewers/commit/0e933c256e07b7cda35ed2ba3cfb1ab35d895d57))
+
+
+
+
+
+# [3.13.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.51...v3.13.0-beta.52) (2026-04-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.50...v3.13.0-beta.51) (2026-04-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.49...v3.13.0-beta.50) (2026-04-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.48...v3.13.0-beta.49) (2026-04-02)
+
+
+### Bug Fixes
+
+* **segmentation:** restrict overlay segmentation menu to same frame of reference as viewport background display set  ([#5900](https://github.com/OHIF/Viewers/issues/5900)) ([b9029ef](https://github.com/OHIF/Viewers/commit/b9029ef6f8d63a0e36ec929310c1c5ad3f563ef8))
+
+
+
+
+
+# [3.13.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.47...v3.13.0-beta.48) (2026-04-01)
+
+
+### Bug Fixes
+
+* **measurement:** Restore viewport interactivity when deleting in-progress Spline or Livewire measurement ([#5905](https://github.com/OHIF/Viewers/issues/5905)) ([7929f08](https://github.com/OHIF/Viewers/commit/7929f0898f1bf882682a912b1c32d93d0944726f))
+
+
+
+
+
+# [3.13.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.46...v3.13.0-beta.47) (2026-03-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.45...v3.13.0-beta.46) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.44...v3.13.0-beta.45) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.43...v3.13.0-beta.44) (2026-03-27)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.42...v3.13.0-beta.43) (2026-03-17)
+
+
+### Bug Fixes
+
+* **SR:** Added support for spline and live wire SR items. ([#5870](https://github.com/OHIF/Viewers/issues/5870)) ([1d4802c](https://github.com/OHIF/Viewers/commit/1d4802c2a38dd75dca7afca87913e100453c9135))
+
+
+
+
+
+# [3.13.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.41...v3.13.0-beta.42) (2026-03-17)
+
+
+### Features
+
+* Add combined build ([#5895](https://github.com/OHIF/Viewers/issues/5895)) ([1df671e](https://github.com/OHIF/Viewers/commit/1df671e9ab67d43f98bf09f6838ddc0a5f220277))
+
+
+
+
+
+# [3.13.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.40...v3.13.0-beta.41) (2026-03-16)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.39...v3.13.0-beta.40) (2026-03-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.38...v3.13.0-beta.39) (2026-03-13)
+
+
+### Bug Fixes
+
+* **window level:** The window level value is not displayed by default on all the viewports when selecting common/custom layout and TMTV. ([#5865](https://github.com/OHIF/Viewers/issues/5865)) ([fe1ecfe](https://github.com/OHIF/Viewers/commit/fe1ecfe0cc5d1bcf82686d821f356da8936a8c4b))
+
+
+
+
+
+# [3.13.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.37...v3.13.0-beta.38) (2026-03-12)
+
+
+### Bug Fixes
+
+* **segmentation:** Display "No description S:{series number} {modality}" for segmentations with no label. ([#5874](https://github.com/OHIF/Viewers/issues/5874)) ([7b5d0ce](https://github.com/OHIF/Viewers/commit/7b5d0ce40e5422ccfce6091ac3d7559586cbe57e))
+
+
+
+
+
+# [3.13.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.36...v3.13.0-beta.37) (2026-03-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.35...v3.13.0-beta.36) (2026-03-11)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.34...v3.13.0-beta.35) (2026-03-09)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.33...v3.13.0-beta.34) (2026-03-09)
+
+
+### Bug Fixes
+
+* **seg hydration:** auto-hydrate RT struct on second load with disableConfirmationPrompts ([#5875](https://github.com/OHIF/Viewers/issues/5875)) ([6f773f9](https://github.com/OHIF/Viewers/commit/6f773f997214c388409f3af3e9fc0e5b84debc10))
+
+
+
+
+
+# [3.13.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.32...v3.13.0-beta.33) (2026-03-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.31...v3.13.0-beta.32) (2026-03-05)
+
+
+### Features
+
+* **ecg:** add DICOM ECG waveform extension ([#5856](https://github.com/OHIF/Viewers/issues/5856)) ([70f76ae](https://github.com/OHIF/Viewers/commit/70f76aeba1b27f8e4de5ec73a7b831428e38e3d2))
+
+
+
+
+
+# [3.13.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.30...v3.13.0-beta.31) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.29...v3.13.0-beta.30) (2026-03-04)
+
+
+### Bug Fixes
+
+* **segmentation:** segment bidirectional tool error and show toast notification when no segment is drawn ([#5861](https://github.com/OHIF/Viewers/issues/5861)) ([7e10830](https://github.com/OHIF/Viewers/commit/7e10830d5802e22bda4df6a3f8008e9a414b4cd4))
+
+
+
+
+
+# [3.13.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.28...v3.13.0-beta.29) (2026-03-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.27...v3.13.0-beta.28) (2026-03-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.26...v3.13.0-beta.27) (2026-03-02)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.25...v3.13.0-beta.26) (2026-02-28)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.24...v3.13.0-beta.25) (2026-02-26)
+
+
+### Bug Fixes
+
+* Update CS3D 4.18.2 ([#5837](https://github.com/OHIF/Viewers/issues/5837)) ([5370b93](https://github.com/OHIF/Viewers/commit/5370b9382e7bfddeadd69bab9e653f5f997a6e19))
+
+
+
+
+
+# [3.13.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.23...v3.13.0-beta.24) (2026-02-24)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.22...v3.13.0-beta.23) (2026-02-23)
+
+
+### Bug Fixes
+
+* palette color 8 encoded 16 ([#5823](https://github.com/OHIF/Viewers/issues/5823)) ([eeca1f7](https://github.com/OHIF/Viewers/commit/eeca1f7a7b529d1700f5d281a6fd98074547ffe9)), closes [#5813](https://github.com/OHIF/Viewers/issues/5813)
+
+
+
+
+
+# [3.13.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.21...v3.13.0-beta.22) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.20...v3.13.0-beta.21) (2026-02-23)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.19...v3.13.0-beta.20) (2026-02-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.18...v3.13.0-beta.19) (2026-02-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [3.13.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.17...v3.13.0-beta.18) (2026-02-19)
+
+
+### Bug Fixes
+
+* **segmentation overlay:** update viewport ds list upon seg delete - OHIF-2425 ([#5729](https://github.com/OHIF/Viewers/issues/5729)) ([b353541](https://github.com/OHIF/Viewers/commit/b35354120a01d89b27844f967c32c052bba8b096))
+
+
+
+
+
+# [3.13.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.16...v3.13.0-beta.17) (2026-02-19)
+
+
+### Bug Fixes
+
+* Add copy to clipboard option for capture ([#5720](https://github.com/OHIF/Viewers/issues/5720)) ([53c67f3](https://github.com/OHIF/Viewers/commit/53c67f361234a0b4160c1b11fafcb143a0723336))
+
+
+
+
+
+# [3.13.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.15...v3.13.0-beta.16) (2026-02-18)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 # [3.13.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.13.0-beta.14...v3.13.0-beta.15) (2026-02-17)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone

extensions/cornerstone/jest.config.js

@@ -5,8 +5,6 @@ module.exports = {
   moduleNameMapper: {
     ...base.moduleNameMapper,
     '@ohif/(.*)': '<rootDir>/../../platform/$1/src',
-    '^@cornerstonejs/([^/]+)/(.*)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm/$2',
-    '^@cornerstonejs/([^/]+)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm',
   },
   // rootDir: "../.."
   // testMatch: [

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "3.13.0-beta.15",
+  "version": "3.13.0-beta.125",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -13,9 +13,7 @@
     "./types": "./src/types/index.ts"
   },
   "engines": {
-    "node": ">=10",
+    "node": ">=24"
-    "npm": ">=6",
-    "yarn": ">=1.16.0"
   },
   "files": [
     "dist",
@@ -26,12 +24,12 @@
   },
   "scripts": {
     "clean": "shx rm -rf dist",
-    "clean:deep": "yarn run clean && shx rm -rf node_modules",
+    "clean:deep": "pnpm run clean && shx rm -rf node_modules",
-    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development rspack build --config .webpack/webpack.dev.js --watch",
-    "dev:cornerstone": "yarn run dev",
+    "dev:cornerstone": "pnpm run dev",
-    "build": "cross-env NODE_ENV=production webpack --progress --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production rspack build --config .webpack/webpack.prod.js",
-    "build:package-1": "yarn run build",
+    "build:package-1": "pnpm run build",
-    "start": "yarn run dev",
+    "start": "pnpm run dev",
     "test:unit": "jest --watchAll",
     "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
   },
@@ -40,10 +38,11 @@
     "@cornerstonejs/codec-libjpeg-turbo-8bit": "1.2.2",
     "@cornerstonejs/codec-openjpeg": "1.3.0",
     "@cornerstonejs/codec-openjph": "2.4.7",
-    "@cornerstonejs/dicom-image-loader": "4.15.29",
+    "@cornerstonejs/dicom-image-loader": "5.4.17",
-    "@ohif/core": "3.13.0-beta.15",
+    "@ohif/core": "workspace:*",
-    "@ohif/ui": "3.13.0-beta.15",
+    "@ohif/extension-default": "workspace:*",
-    "dcmjs": "0.49.4",
+    "@ohif/ui": "workspace:*",
+    "dcmjs": "0.52.0",
     "dicom-parser": "1.8.21",
     "hammerjs": "2.0.8",
     "prop-types": "15.8.1",
@@ -52,16 +51,17 @@
     "react-resize-detector": "10.0.1"
   },
   "dependencies": {
-    "@babel/runtime": "7.28.2",
+    "@babel/runtime": "7.29.7",
-    "@cornerstonejs/adapters": "4.15.29",
+    "@cornerstonejs/adapters": "5.4.17",
-    "@cornerstonejs/ai": "4.15.29",
+    "@cornerstonejs/ai": "5.4.17",
-    "@cornerstonejs/core": "4.15.29",
+    "@cornerstonejs/core": "5.4.17",
-    "@cornerstonejs/labelmap-interpolation": "4.15.29",
+    "@cornerstonejs/labelmap-interpolation": "5.4.17",
-    "@cornerstonejs/polymorphic-segmentation": "4.15.29",
+    "@cornerstonejs/metadata": "5.4.17",
-    "@cornerstonejs/tools": "4.15.29",
+    "@cornerstonejs/polymorphic-segmentation": "5.4.17",
+    "@cornerstonejs/tools": "5.4.17",
     "@icr/polyseg-wasm": "0.4.0",
     "@itk-wasm/morphological-contour-interpolation": "1.1.0",
-    "@kitware/vtk.js": "34.15.1",
+    "@kitware/vtk.js": "35.5.3",
     "html2canvas": "1.4.1",
     "immutability-helper": "3.1.1",
     "lodash.compact": "3.0.1",
@@ -70,5 +70,8 @@
     "lodash.zip": "4.2.0",
     "shader-loader": "1.3.1",
     "worker-loader": "3.0.8"
+  },
+  "devDependencies": {
+    "cross-env": "7.0.3"
   }
 }

extensions/cornerstone/src/Viewport/Overlays/CornerstoneOverlays.tsx

@@ -1,13 +1,14 @@
 import React, { useEffect, useState } from 'react';
 
 import ViewportImageScrollbar from './ViewportImageScrollbar';
+import ViewportSliceProgressScrollbar from './ViewportSliceProgressScrollbar/ViewportSliceProgressScrollbar';
 import CustomizableViewportOverlay from './CustomizableViewportOverlay';
 import ViewportOrientationMarkers from './ViewportOrientationMarkers';
 import ViewportImageSliceLoadingIndicator from './ViewportImageSliceLoadingIndicator';
 
 function CornerstoneOverlays(props: withAppTypes) {
   const { viewportId, element, scrollbarHeight, servicesManager } = props;
-  const { cornerstoneViewportService } = servicesManager.services;
+  const { cornerstoneViewportService, customizationService } = servicesManager.services;
   const [imageSliceData, setImageSliceData] = useState({
     imageIndex: 0,
     numberOfSlices: 0,
@@ -43,17 +44,31 @@ function CornerstoneOverlays(props: withAppTypes) {
     }
   }
 
+  const viewportScrollbarVariant = customizationService.getCustomization('viewportScrollbar.variant');
+  const useProgressScrollbar = viewportScrollbarVariant !== 'legacy';
+
   return (
     <div className="noselect">
-      <ViewportImageScrollbar
+      {useProgressScrollbar ? (
-        viewportId={viewportId}
+        <ViewportSliceProgressScrollbar
-        viewportData={viewportData}
+          viewportId={viewportId}
-        element={element}
+          viewportData={viewportData}
-        imageSliceData={imageSliceData}
+          element={element}
-        setImageSliceData={setImageSliceData}
+          imageSliceData={imageSliceData}
-        scrollbarHeight={scrollbarHeight}
+          setImageSliceData={setImageSliceData}
-        servicesManager={servicesManager}
+          servicesManager={servicesManager}
-      />
+        />
+      ) : (
+        <ViewportImageScrollbar
+          viewportId={viewportId}
+          viewportData={viewportData}
+          element={element}
+          imageSliceData={imageSliceData}
+          setImageSliceData={setImageSliceData}
+          scrollbarHeight={scrollbarHeight}
+          servicesManager={servicesManager}
+        />
+      )}
 
       <CustomizableViewportOverlay
         imageSliceData={imageSliceData}

extensions/cornerstone/src/Viewport/Overlays/CustomizableViewportOverlay.tsx

@@ -1,7 +1,7 @@
 import React, { useCallback, useEffect, useMemo, useState } from 'react';
 import { vec3 } from 'gl-matrix';
 import PropTypes from 'prop-types';
-import { metaData, Enums, utilities, eventTarget } from '@cornerstonejs/core';
+import { metaData, Enums, eventTarget } from '@cornerstonejs/core';
 import { Enums as csToolsEnums, UltrasoundPleuraBLineTool } from '@cornerstonejs/tools';
 import type { ImageSliceData } from '@cornerstonejs/core/types';
 import { ViewportOverlay, formatDICOMDate } from '@ohif/ui-next';
@@ -9,12 +9,14 @@ import type { InstanceMetadata } from '@ohif/core/src/types';
 import { formatDICOMTime, formatNumberPrecision } from './utils';
 import { utils } from '@ohif/core';
 import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
+import { getViewportAdapter } from '../../services/ViewportService/adapter';
+import { getViewportDataShapeType } from '../../utils/viewportDataShape';
 
 import './CustomizableViewportOverlay.css';
 import { useViewportRendering } from '../../hooks';
 
 const EPSILON = 1e-4;
-const { formatPN } = utils;
+const { formatPN, formatValue } = utils;
 
 type ViewportData = StackViewportData | VolumeViewportData;
 
@@ -67,10 +69,9 @@ function CustomizableViewportOverlay({
 }) {
   const { cornerstoneViewportService, customizationService, toolGroupService, displaySetService } =
     servicesManager.services;
-  const [voi, setVOI] = useState({ windowCenter: null, windowWidth: null });
   const [scale, setScale] = useState(1);
   const [annotationState, setAnnotationState] = useState(0);
-  const { isViewportBackgroundLight: isLight } = useViewportRendering(viewportId);
+  const { isViewportBackgroundLight: isLight, windowLevel: voi } = useViewportRendering(viewportId);
   const { imageIndex } = imageSliceData;
 
   // Historical usage defined the overlays as separate items due to lack of
@@ -110,30 +111,6 @@ function CustomizableViewportOverlay({
     };
   }, [viewportData, viewportId, instanceNumber, cornerstoneViewportService]);
 
-  /**
-   * Updating the VOI when the viewport changes its voi
-   */
-  useEffect(() => {
-    const updateVOI = eventDetail => {
-      const { range } = eventDetail.detail;
-
-      if (!range) {
-        return;
-      }
-
-      const { lower, upper } = range;
-      const { windowWidth, windowCenter } = utilities.windowLevel.toWindowLevel(lower, upper);
-
-      setVOI({ windowCenter, windowWidth });
-    };
-
-    element.addEventListener(Enums.Events.VOI_MODIFIED, updateVOI);
-
-    return () => {
-      element.removeEventListener(Enums.Events.VOI_MODIFIED, updateVOI);
-    };
-  }, [viewportId, viewportData, voi, element]);
-
   const annotationModified = useCallback(evt => {
     if (evt.detail.annotation.metadata.toolName === UltrasoundPleuraBLineTool.toolName) {
       // Update the annotation state to trigger a re-render
@@ -209,7 +186,12 @@ function CustomizableViewportOverlay({
       } else {
         const renderItem = customizationService.transform(item);
 
-        if (typeof renderItem.contentF === 'function') {
+        if (
+          renderItem &&
+          typeof renderItem === 'object' &&
+          'contentF' in renderItem &&
+          typeof renderItem.contentF === 'function'
+        ) {
           return renderItem.contentF(overlayItemProps);
         }
       }
@@ -226,6 +208,7 @@ function CustomizableViewportOverlay({
       scale,
       instanceNumber,
       annotationState,
+      isLight,
     ]
   );
 
@@ -288,7 +271,7 @@ function getDisplaySets(viewportData, displaySetService) {
 const getInstanceNumber = (viewportData, viewportId, imageIndex, cornerstoneViewportService) => {
   let instanceNumber;
 
-  switch (viewportData.viewportType) {
+  switch (getViewportDataShapeType(viewportData)) {
     case Enums.ViewportType.STACK:
       instanceNumber = _getInstanceNumberFromStack(viewportData, imageIndex);
       break;
@@ -355,8 +338,11 @@ function _getInstanceNumberFromVolume(
     return;
   }
 
-  const camera = cornerstoneViewport.getCamera();
+  const viewPlaneNormal = getViewportAdapter(cornerstoneViewport).getViewPlaneNormal();
-  const { viewPlaneNormal } = camera;
+
+  if (!viewPlaneNormal) {
+    return;
+  }
   // checking if camera is looking at the acquisition plane (defined by the direction on the volume)
 
   const scanAxisNormal = direction.slice(6, 9);
@@ -369,7 +355,10 @@ function _getInstanceNumberFromVolume(
     const imageId = imageIds[imageIndex];
 
     if (!imageId) {
-      return {};
+      // No image at this index (e.g. a single-image volume scrolled out of
+      // range). Return undefined so the overlay falls back to the slice count
+      // instead of rendering an empty object as "[object Object]".
+      return;
     }
 
     const { instanceNumber } = metaData.get('generalImageModule', imageId) || {};
@@ -381,7 +370,8 @@ function OverlayItem(props) {
   const { instance, customization = {} } = props;
   const { color, attribute, title, label, background } = customization;
   const value = customization.contentF?.(props, customization) ?? instance?.[attribute];
-  if (value === undefined || value === null) {
+  const displayValue = formatValue(value);
+  if (displayValue === null || displayValue === '') {
     return null;
   }
   return (
@@ -391,7 +381,7 @@ function OverlayItem(props) {
       title={title}
     >
       {label ? <span className="mr-1 shrink-0">{label}</span> : null}
-      <span className="ml-0 mr-2 shrink-0">{value}</span>
+      <span className="ml-0 shrink-0">{displayValue}</span>
     </div>
   );
 }
@@ -402,6 +392,7 @@ function OverlayItem(props) {
  */
 function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
   const { windowWidth, windowCenter } = voi;
+  const { title } = customization;
   if (typeof windowCenter !== 'number' || typeof windowWidth !== 'number') {
     return null;
   }
@@ -410,6 +401,7 @@ function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
     <div
       className="overlay-item flex flex-row"
       style={{ color: customization?.color }}
+      title={title}
     >
       <span className="mr-0.5 shrink-0 opacity-[0.70]">W:</span>
       <span className="mr-2.5 shrink-0">{windowWidth.toFixed(0)}</span>
@@ -443,11 +435,13 @@ function InstanceNumberOverlayItem({
   customization,
 }: OverlayItemProps) {
   const { imageIndex, numberOfSlices } = imageSliceData;
+  const { title } = customization;
 
   return (
     <div
       className="overlay-item flex flex-row"
       style={{ color: (customization && customization.color) || undefined }}
+      title={title}
     >
       <span>
         {instanceNumber !== undefined && instanceNumber !== null ? (

extensions/cornerstone/src/Viewport/Overlays/ViewportImageScrollbar.tsx

@@ -1,7 +1,9 @@
 import React, { useEffect } from 'react';
 import PropTypes from 'prop-types';
-import { Enums, VolumeViewport3D, utilities as csUtils } from '@cornerstonejs/core';
+import { utilities as csUtils } from '@cornerstonejs/core';
 import { ImageScrollbar } from '@ohif/ui-next';
+import { isVolume3DViewportType } from '../../utils/getLegacyViewportType';
+import { getSliceEventName, getViewportSliceCount } from '../../utils/viewportDataShape';
 
 function CornerstoneImageScrollbar({
   viewportData,
@@ -40,16 +42,16 @@ function CornerstoneImageScrollbar({
 
     const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
 
-    if (!viewport || viewport instanceof VolumeViewport3D) {
+    if (!viewport || isVolume3DViewportType(viewport)) {
       return;
     }
 
     try {
       const imageIndex = viewport.getCurrentImageIdIndex();
-      const numberOfSlices = viewport.getNumberOfSlices();
+      const numberOfSlices = getViewportSliceCount(viewportData, viewport);
 
       setImageSliceData({
-        imageIndex: imageIndex,
+        imageIndex,
         numberOfSlices,
       });
     } catch (error) {
@@ -61,15 +63,11 @@ function CornerstoneImageScrollbar({
     if (!viewportData) {
       return;
     }
-    const { viewportType } = viewportData;
+    const eventId = getSliceEventName(viewportData);
-    const eventId =
-      (viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_NEW_IMAGE) ||
-      (viewportType === Enums.ViewportType.ORTHOGRAPHIC && Enums.Events.VOLUME_NEW_IMAGE) ||
-      Enums.Events.IMAGE_RENDERED;
 
     const updateIndex = event => {
       const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
-      if (!viewport || viewport instanceof VolumeViewport3D) {
+      if (!viewport || isVolume3DViewportType(viewport)) {
         return;
       }
       const { imageIndex, newImageIdIndex = imageIndex, imageIdIndex } = event.detail;

extensions/cornerstone/src/Viewport/Overlays/ViewportOrientationMarkers.tsx

@@ -6,6 +6,7 @@ import { vec3 } from 'gl-matrix';
 
 import './ViewportOrientationMarkers.css';
 import { useViewportRendering } from '../../hooks';
+import { getViewportDataShapeType } from '../../utils/viewportDataShape';
 const { getOrientationStringLPS, invertOrientationStringLPS } = utilities.orientation;
 
 function ViewportOrientationMarkers({
@@ -46,7 +47,9 @@ function ViewportOrientationMarkers({
       return '';
     }
 
-    if (viewportData.viewportType === 'stack') {
+    // Use the persisted data shape, not viewportType: a native stack reports
+    // PLANAR_NEXT, which would skip this synthetic-IOP default-cosine guard.
+    if (getViewportDataShapeType(viewportData) === Enums.ViewportType.STACK) {
       const imageIndex = imageSliceData.imageIndex;
       const imageId = viewportData.data[0].imageIds?.[imageIndex];
 

extensions/cornerstone/src/Viewport/Overlays/ViewportSliceProgressScrollbar/ViewportSliceProgressScrollbar.tsx

@@ -0,0 +1,201 @@
+import React, { useMemo } from 'react';
+import PropTypes from 'prop-types';
+import { utilities as csUtils } from '@cornerstonejs/core';
+import { isVolume3DViewportType } from '../../../utils/getLegacyViewportType';
+import {
+  SmartScrollbar,
+  SmartScrollbarTrack,
+  SmartScrollbarFill,
+  SmartScrollbarIndicator,
+  SmartScrollbarEndpoints,
+} from '@ohif/ui-next';
+import { getViewportImageIds } from './helpers';
+import {
+  useLoadedSliceBytes,
+  useProgressScrollbarMode,
+  useViewedSliceBytes,
+  useViewportSliceSync,
+} from './hooks';
+import { ViewportSliceProgressScrollbarProps } from './types';
+
+function ViewportSliceProgressScrollbar({
+  viewportData,
+  viewportId,
+  element,
+  imageSliceData,
+  setImageSliceData,
+  servicesManager,
+}: ViewportSliceProgressScrollbarProps) {
+  const { cineService, cornerstoneViewportService, customizationService, viewedDataService } =
+    servicesManager.services;
+
+  const showLoadedEndpoints =
+    customizationService.getCustomization('viewportScrollbar.showLoadedEndpoints') !== false;
+  const showLoadedFill =
+    customizationService.getCustomization('viewportScrollbar.showLoadedFill') !== false;
+  const showViewedFill =
+    customizationService.getCustomization('viewportScrollbar.showViewedFill') !== false;
+  const showLoadingPattern =
+    customizationService.getCustomization('viewportScrollbar.showLoadingPattern') !== false;
+  const viewedDwellMsRaw = customizationService.getCustomization('viewportScrollbar.viewedDwellMs');
+  const loadedBatchIntervalMsRaw = customizationService.getCustomization(
+    'viewportScrollbar.loadedBatchIntervalMs'
+  );
+  const viewedDwellMs =
+    typeof viewedDwellMsRaw === 'number' && viewedDwellMsRaw >= 0 ? viewedDwellMsRaw : 0;
+  const loadedBatchIntervalMs =
+    typeof loadedBatchIntervalMsRaw === 'number' && loadedBatchIntervalMsRaw >= 0
+      ? loadedBatchIntervalMsRaw
+      : 200;
+
+  const { numberOfSlices, imageIndex } = imageSliceData;
+
+  const imageIds = useMemo(() => getViewportImageIds(viewportData), [viewportData]);
+  const imageIdToIndex = useMemo(() => {
+    const map = new Map<string, number>();
+    for (let i = 0; i < imageIds.length; i++) {
+      const imageId = imageIds[i];
+      if (imageId) {
+        map.set(imageId, i);
+      }
+    }
+    return map;
+  }, [imageIds]);
+
+  const isFullMode = useProgressScrollbarMode({
+    viewportData,
+    viewportId,
+    element,
+    cornerstoneViewportService,
+  });
+
+  useViewportSliceSync({
+    viewportData,
+    viewportId,
+    element,
+    cornerstoneViewportService,
+    setImageSliceData,
+  });
+
+  const {
+    bytes: loadedBytes,
+    version: loadedVersion,
+    isFull: isFullyLoaded,
+  } = useLoadedSliceBytes({
+    isFullMode,
+    numberOfSlices,
+    viewportData,
+    imageIds,
+    imageIdToIndex,
+    loadedBatchIntervalMs,
+  });
+
+  const { bytes: viewedBytes, version: viewedVersion } = useViewedSliceBytes({
+    isFullMode,
+    numberOfSlices,
+    imageIndex,
+    imageIds,
+    imageIdToIndex,
+    viewedDwellMs,
+    viewedDataService,
+  });
+
+  const onScrollbarValueChange = targetImageIndex => {
+    const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
+
+    if (!viewport || isVolume3DViewportType(viewport)) {
+      return;
+    }
+
+    const { isCineEnabled } = cineService.getState();
+
+    if (isCineEnabled) {
+      cineService.stopClip(element, { viewportId });
+      cineService.setCine({ id: viewportId, frameRate: undefined, isPlaying: false });
+    }
+
+    csUtils.jumpToSlice(viewport.element, {
+      imageIndex: targetImageIndex,
+      debounceLoading: true,
+    });
+  };
+
+  const isLoading = isFullMode && showLoadingPattern ? !isFullyLoaded : false;
+
+  if (!numberOfSlices || numberOfSlices <= 1) {
+    return null;
+  }
+
+  return (
+    <div
+      style={{
+        position: 'absolute',
+        right: 0,
+        top: 0,
+        height: '100%',
+        padding: '8px 5px',
+        zIndex: 10,
+      }}
+    >
+      <div
+        style={{
+          position: 'relative',
+          height: '100%',
+          width: '11px',
+        }}
+      >
+        <SmartScrollbar
+          className="absolute inset-0"
+          value={imageIndex || 0}
+          total={numberOfSlices}
+          onValueChange={onScrollbarValueChange}
+          isLoading={isLoading}
+          enableKeyboardNavigation={false}
+          aria-label="Image navigation scrollbar"
+          indicator={
+            customizationService.getCustomization('viewportScrollbar.indicator') as
+              | Record<string, unknown>
+              | undefined
+          }
+        >
+          <SmartScrollbarTrack>
+            {isFullMode && showLoadedFill && (
+              <SmartScrollbarFill
+                marked={loadedBytes}
+                version={loadedVersion}
+                className="bg-neutral/25"
+                loadingClassName="bg-neutral/50"
+              />
+            )}
+            {isFullMode && showViewedFill && (
+              <SmartScrollbarFill
+                marked={viewedBytes}
+                version={viewedVersion}
+                className="bg-primary/35"
+                loadingClassName="bg-primary/35"
+              />
+            )}
+          </SmartScrollbarTrack>
+          <SmartScrollbarIndicator />
+          {isFullMode && showLoadedEndpoints && (
+            <SmartScrollbarEndpoints
+              marked={loadedBytes}
+              version={loadedVersion}
+            />
+          )}
+        </SmartScrollbar>
+      </div>
+    </div>
+  );
+}
+
+ViewportSliceProgressScrollbar.propTypes = {
+  viewportData: PropTypes.object,
+  viewportId: PropTypes.string.isRequired,
+  element: PropTypes.instanceOf(Element),
+  imageSliceData: PropTypes.object.isRequired,
+  setImageSliceData: PropTypes.func.isRequired,
+  servicesManager: PropTypes.object.isRequired,
+};
+
+export default ViewportSliceProgressScrollbar;

extensions/cornerstone/src/Viewport/Overlays/ViewportSliceProgressScrollbar/helpers.ts

@@ -0,0 +1,46 @@
+import { ViewportData } from './types';
+import { isVolume3DViewportType } from '../../../utils/getLegacyViewportType';
+import { getViewportAdapter } from '../../../services/ViewportService/adapter';
+
+export function getImageIndexFromEvent(event): number | undefined {
+  const { imageIndex, newImageIdIndex = imageIndex, imageIdIndex } = event.detail;
+  return newImageIdIndex ?? imageIdIndex;
+}
+
+export function getViewportImageIds(viewportData: ViewportData): string[] {
+  if (!viewportData?.data?.length) {
+    return [];
+  }
+
+  const firstData = viewportData.data[0];
+  const volumeImageIds = (firstData as any).volume?.imageIds as string[] | undefined;
+  const datumImageIds = (firstData as any).imageIds as string[] | undefined;
+
+  return volumeImageIds || datumImageIds || [];
+}
+
+export function isProgressFullMode(viewportData: ViewportData, viewport): boolean {
+  if (!viewportData || !viewport || isVolume3DViewportType(viewport)) {
+    return false;
+  }
+
+  // A stack renders the full progress UI; an acquisition-plane volume is the
+  // volume-mode equivalent. The adapter classifies both lanes (legacy by
+  // viewport type / isInAcquisitionPlane; native by content mode + view-state
+  // orientation, since PLANAR_NEXT collapses the runtime type).
+  const adapter = getViewportAdapter(viewport);
+  const shape = adapter.getShape();
+  if (shape === 'stack') {
+    return true;
+  }
+  if (shape === 'volume') {
+    return adapter.isInAcquisitionPlane();
+  }
+
+  return false;
+}
+
+export function getImageIdFromCacheEvent(event): string | undefined {
+  const detail = event?.detail;
+  return detail?.imageId || detail?.image?.imageId || detail?.cachedImage?.imageId;
+}

extensions/cornerstone/src/Viewport/Overlays/ViewportSliceProgressScrollbar/hooks.ts

@@ -0,0 +1,377 @@
+import { useEffect, useRef, useState } from 'react';
+import { cache as cornerstoneCache, Enums, eventTarget, utilities } from '@cornerstonejs/core';
+import { useByteArray } from '@ohif/ui-next';
+import { isVolume3DViewportType } from '../../../utils/getLegacyViewportType';
+import { getSliceEventName, getViewportSliceCount } from '../../../utils/viewportDataShape';
+import { getImageIdFromCacheEvent, getImageIndexFromEvent, isProgressFullMode } from './helpers';
+import { ImageSliceData, ViewportData } from './types';
+
+export function useProgressScrollbarMode({
+  viewportData,
+  viewportId,
+  element,
+  cornerstoneViewportService,
+}: {
+  viewportData: ViewportData;
+  viewportId: string;
+  element: HTMLElement;
+  cornerstoneViewportService: AppTypes.CornerstoneViewportService;
+}) {
+  const [isFullMode, setIsFullMode] = useState(false);
+  const lastViewPlaneNormalRef = useRef<number[] | null>(null);
+
+  /**
+   * Tracks whether this viewport should render full progress UI (stack or acquisition-plane
+   * orthographic volume) versus minimal UI. We compute once on setup and recompute on each
+   * CAMERA_MODIFIED event so stack->MPR transitions and acquisition-plane changes are reflected
+   * immediately.
+   */
+  useEffect(() => {
+    if (!viewportData) {
+      return;
+    }
+
+    const updateMode = () => {
+      const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
+      const viewportImageData = viewport?.getImageData?.();
+      const nextViewPlaneNormal = viewport?.getCamera?.()?.viewPlaneNormal as number[] | undefined;
+      // Do not update the lastViewPlaneNormalRef until we have a valid viewportImageData.
+      // Without viewportImageData, the viewport is not fully initialized and the isAcquisitionPlane
+      // check will not be accurate.
+      if (viewportImageData && nextViewPlaneNormal) {
+        lastViewPlaneNormalRef.current = [...nextViewPlaneNormal];
+      }
+      const nextMode = isProgressFullMode(viewportData, viewport);
+      setIsFullMode(prevMode => (prevMode === nextMode ? prevMode : nextMode));
+    };
+
+    updateMode();
+
+    const onCameraModified = () => {
+      const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
+      const nextViewPlaneNormal = viewport?.getCamera?.()?.viewPlaneNormal as number[] | undefined;
+      const previousViewPlaneNormal = lastViewPlaneNormalRef.current;
+
+      // Ignore camera updates that keep the same orientation (pan/zoom/scroll).
+      if (nextViewPlaneNormal && previousViewPlaneNormal) {
+        if (utilities.isEqual(nextViewPlaneNormal, previousViewPlaneNormal)) {
+          return;
+        }
+      }
+
+      updateMode();
+    };
+    element.addEventListener(Enums.Events.CAMERA_MODIFIED, onCameraModified);
+
+    return () => {
+      element.removeEventListener(Enums.Events.CAMERA_MODIFIED, onCameraModified);
+    };
+  }, [viewportData, viewportId, cornerstoneViewportService, element]);
+
+  return isFullMode;
+}
+
+export function useViewportSliceSync({
+  viewportData,
+  viewportId,
+  element,
+  cornerstoneViewportService,
+  setImageSliceData,
+}: {
+  viewportData: ViewportData;
+  viewportId: string;
+  element: HTMLElement;
+  cornerstoneViewportService: AppTypes.CornerstoneViewportService;
+  setImageSliceData: (data: ImageSliceData) => void;
+}) {
+  /**
+   * Keeps shared slice state in sync: first initialize from the live viewport snapshot, then
+   * subscribe to navigation/render events for incremental updates while users scroll.
+   */
+  useEffect(() => {
+    if (!viewportData) {
+      return;
+    }
+
+    // Last values we pushed, so re-seeding on camera changes does not churn React
+    // state on pure pan/zoom (which keep the slice geometry unchanged).
+    const lastSlice = { imageIndex: -1, numberOfSlices: -1 };
+
+    const pushSliceData = (imageIndex: number, numberOfSlices: number) => {
+      if (imageIndex === lastSlice.imageIndex && numberOfSlices === lastSlice.numberOfSlices) {
+        return;
+      }
+      lastSlice.imageIndex = imageIndex;
+      lastSlice.numberOfSlices = numberOfSlices;
+      setImageSliceData({ imageIndex, numberOfSlices });
+    };
+
+    // Seeds the shared slice state from the live viewport. Re-run on the initial
+    // effect and on camera/orientation changes (below).
+    const syncFromViewport = () => {
+      const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
+      if (!viewport || isVolume3DViewportType(viewport)) {
+        return;
+      }
+      try {
+        const currentImageIndex = viewport.getCurrentImageIdIndex();
+        const currentNumberOfSlices = getViewportSliceCount(viewportData, viewport);
+
+        pushSliceData(currentImageIndex, currentNumberOfSlices);
+      } catch (error) {
+        console.warn(error);
+      }
+    };
+
+    syncFromViewport();
+
+    // A post-mount camera carry (e.g. the layout-selector MPR protocol restoring
+    // the prior stack slice onto the freshly-mounted volume viewport) moves the
+    // camera and fires its slice events synchronously during the mount — before
+    // these listeners attach and around the initial seed above — so the scrollbar
+    // can latch the mount-time index instead of the carried slice. Re-seed once on
+    // the next frame, after the mount+carry settles; pushSliceData makes it a
+    // no-op when nothing changed (no churn/flicker).
+    const reseedRaf = requestAnimationFrame(syncFromViewport);
+
+    const eventId = getSliceEventName(viewportData);
+
+    const updateIndex = event => {
+      const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
+      if (!viewport || isVolume3DViewportType(viewport)) {
+        return;
+      }
+
+      const nextImageIndex = getImageIndexFromEvent(event);
+      if (nextImageIndex == null) {
+        return;
+      }
+      const nextNumberOfSlices = viewport.getNumberOfSlices();
+
+      pushSliceData(nextImageIndex, nextNumberOfSlices);
+    };
+
+    element.addEventListener(eventId, updateIndex);
+    // Native ("next") viewports keep the same viewportData across a stack->volume
+    // transition or an orientation change, so this effect does not re-run and the
+    // slice-navigation event above may not fire until the first scroll, leaving the
+    // scrollbar unseeded (or stale, with a now-wrong slice count). CAMERA_MODIFIED
+    // fires on those orientation/geometry changes, so re-seed from the viewport
+    // then; the pushSliceData guard makes pan/zoom (same geometry) a no-op.
+    element.addEventListener(Enums.Events.CAMERA_MODIFIED, syncFromViewport);
+
+    return () => {
+      cancelAnimationFrame(reseedRaf);
+      element.removeEventListener(eventId, updateIndex);
+      element.removeEventListener(Enums.Events.CAMERA_MODIFIED, syncFromViewport);
+    };
+  }, [viewportData, element, viewportId, cornerstoneViewportService, setImageSliceData]);
+}
+
+export function useLoadedSliceBytes({
+  isFullMode,
+  numberOfSlices,
+  viewportData,
+  imageIds,
+  imageIdToIndex,
+  loadedBatchIntervalMs,
+}: {
+  isFullMode: boolean;
+  numberOfSlices: number;
+  viewportData: ViewportData;
+  imageIds: string[];
+  imageIdToIndex: Map<string, number>;
+  loadedBatchIntervalMs: number;
+}) {
+  const loadedState = useByteArray(numberOfSlices || 0, loadedBatchIntervalMs);
+  const {
+    resetWith: resetLoaded,
+    setByte: setLoadedByte,
+    clearByte: clearLoadedByte,
+  } = loadedState;
+
+  /**
+   * Keeps the loaded byte array in sync with Cornerstone cache: seed from cache whenever stack /
+   * mode / slice count changes, then subscribe so cache add/remove updates stay incremental.
+   * Seeding runs immediately before registering listeners in the same effect.
+   */
+  useEffect(() => {
+    if (isFullMode && numberOfSlices) {
+      resetLoaded(bytes => {
+        for (let i = 0; i < bytes.length; i++) {
+          const imageId = imageIds[i];
+          if (imageId && cornerstoneCache.isLoaded(imageId)) {
+            bytes[i] = 1;
+          }
+        }
+      });
+    }
+
+    if (!isFullMode || !viewportData) {
+      return;
+    }
+
+    const markLoaded = event => {
+      const imageId = getImageIdFromCacheEvent(event);
+      if (!imageId) {
+        return;
+      }
+      const index = imageIdToIndex.get(imageId);
+      if (index !== undefined) {
+        setLoadedByte(index);
+      }
+    };
+
+    const markRemoved = event => {
+      const imageId = getImageIdFromCacheEvent(event);
+      if (!imageId) {
+        return;
+      }
+      const index = imageIdToIndex.get(imageId);
+      if (index !== undefined) {
+        clearLoadedByte(index);
+      }
+    };
+
+    eventTarget.addEventListener(Enums.Events.IMAGE_CACHE_IMAGE_ADDED, markLoaded);
+    eventTarget.addEventListener(Enums.Events.IMAGE_CACHE_IMAGE_REMOVED, markRemoved);
+
+    return () => {
+      eventTarget.removeEventListener(Enums.Events.IMAGE_CACHE_IMAGE_ADDED, markLoaded);
+      eventTarget.removeEventListener(Enums.Events.IMAGE_CACHE_IMAGE_REMOVED, markRemoved);
+    };
+  }, [
+    imageIds,
+    isFullMode,
+    numberOfSlices,
+    viewportData,
+    imageIdToIndex,
+    resetLoaded,
+    setLoadedByte,
+    clearLoadedByte,
+  ]);
+
+  return loadedState;
+}
+
+export function useViewedSliceBytes({
+  isFullMode,
+  numberOfSlices,
+  imageIndex,
+  imageIds,
+  imageIdToIndex,
+  viewedDwellMs,
+  viewedDataService,
+}: {
+  isFullMode: boolean;
+  numberOfSlices: number;
+  imageIndex: number;
+  imageIds: string[];
+  imageIdToIndex: Map<string, number>;
+  viewedDwellMs: number;
+  viewedDataService: AppTypes.ViewedDataService;
+}) {
+  const viewedState = useByteArray(numberOfSlices || 0);
+  const { resetWith: resetViewed, setByte: setViewedByte } = viewedState;
+
+  /**
+   * Keeps the viewed byte array in sync with the global viewed-data store: seed from the store
+   * whenever stack / mode / slice count changes, then subscribe so `markDataViewed` updates stay
+   * incremental. Seeding runs immediately before registering the listener in the same effect.
+   */
+  useEffect(() => {
+    if (isFullMode && numberOfSlices) {
+      resetViewed(bytes => {
+        for (let i = 0; i < bytes.length; i++) {
+          const imageId = imageIds[i];
+          if (imageId && viewedDataService?.isDataViewed(imageId)) {
+            bytes[i] = 1;
+          }
+        }
+      });
+    }
+
+    if (!viewedDataService) {
+      return;
+    }
+
+    const subscription = viewedDataService.subscribeViewedDataChanges(
+      ({
+        viewedDataId,
+        viewedDataCleared,
+      }: {
+        viewedDataId?: string;
+        viewedDataCleared?: boolean;
+      }) => {
+        if (!isFullMode || !numberOfSlices) {
+          return;
+        }
+
+        if (viewedDataCleared) {
+          resetViewed(bytes => {
+            bytes.fill(0);
+          });
+          return;
+        }
+
+        const index = imageIdToIndex.get(viewedDataId);
+        if (index !== undefined) {
+          setViewedByte(index);
+        }
+      }
+    );
+
+    return () => {
+      subscription.unsubscribe();
+    };
+  }, [
+    imageIds,
+    isFullMode,
+    numberOfSlices,
+    imageIdToIndex,
+    resetViewed,
+    setViewedByte,
+    viewedDataService,
+  ]);
+
+  /**
+   * Marks slices as viewed in full mode. With `viewedDwellMs === 0`, marking is immediate on
+   * index change; otherwise a dwell timer is used and cleaned up on subsequent changes/unmount.
+   */
+  useEffect(() => {
+    if (!isFullMode || !numberOfSlices) {
+      return;
+    }
+
+    const markViewed = (targetIndex: number) => {
+      setViewedByte(targetIndex);
+      const imageId = imageIds[targetIndex];
+      if (imageId) {
+        viewedDataService?.markDataViewed(imageId);
+      }
+    };
+
+    if (viewedDwellMs === 0) {
+      markViewed(imageIndex || 0);
+      return;
+    }
+
+    const timerId = window.setTimeout(() => {
+      markViewed(imageIndex || 0);
+    }, viewedDwellMs);
+
+    return () => {
+      window.clearTimeout(timerId);
+    };
+  }, [
+    isFullMode,
+    numberOfSlices,
+    imageIndex,
+    imageIds,
+    setViewedByte,
+    viewedDwellMs,
+    viewedDataService,
+  ]);
+
+  return viewedState;
+}

extensions/cornerstone/src/Viewport/Overlays/ViewportSliceProgressScrollbar/index.ts

@@ -0,0 +1 @@
+export { default } from './ViewportSliceProgressScrollbar';

extensions/cornerstone/src/Viewport/Overlays/ViewportSliceProgressScrollbar/types.ts

@@ -0,0 +1,17 @@
+import { StackViewportData, VolumeViewportData } from '../../../types/CornerstoneCacheService';
+
+export type ViewportData = StackViewportData | VolumeViewportData;
+
+export type ImageSliceData = {
+  imageIndex: number;
+  numberOfSlices: number;
+};
+
+export type ViewportSliceProgressScrollbarProps = {
+  viewportData: ViewportData | null;
+  viewportId: string;
+  element: HTMLElement;
+  imageSliceData: ImageSliceData;
+  setImageSliceData: (data: ImageSliceData) => void;
+  servicesManager: AppTypes.ServicesManager;
+};

extensions/cornerstone/src/commandsModule.ts

@@ -1,11 +1,7 @@
 import {
   getEnabledElement,
-  StackViewport,
-  VolumeViewport,
   utilities as csUtils,
-  Enums as CoreEnums,
   Types as CoreTypes,
-  BaseVolumeViewport,
   getRenderingEngines,
 } from '@cornerstonejs/core';
 import {
@@ -15,6 +11,7 @@ import {
   annotation,
   Types as ToolTypes,
   SplineContourSegmentationTool,
+  cancelActiveManipulations,
 } from '@cornerstonejs/tools';
 import {
   SegmentInfo,
@@ -32,12 +29,22 @@ import {
   colorPickerDialog,
   callInputDialog,
 } from '@ohif/extension-default';
-import { vec3, mat4 } from 'gl-matrix';
 import toggleImageSliceSync from './utils/imageSliceSync/toggleImageSliceSync';
+// Sanctioned flag read: RTSTRUCT contour hydration pins the referenced image to
+// stack mode on the native ("next") path, a decision made before a target viewport exists.
+import { getHydrationViewportTypeForModality } from './utils/nextViewportPolicies';
 import { getFirstAnnotationSelected } from './utils/measurementServiceMappings/utils/selection';
 import { getViewportEnabledElement } from './utils/getViewportEnabledElement';
 import getActiveViewportEnabledElement from './utils/getActiveViewportEnabledElement';
 import toggleVOISliceSync from './utils/toggleVOISliceSync';
+import {
+  isStackViewportType,
+  isOrthographicViewportType,
+  isVolume3DViewportType,
+  isVolumeViewportType,
+} from './utils/getLegacyViewportType';
+import { viewportOperations as ops } from './services/ViewportService/backends/viewportOperations';
+import { getViewportAdapter } from './services/ViewportService/adapter';
 import {
   usePositionPresentationStore,
   useSegmentationPresentationStore,
@@ -49,8 +56,6 @@ import { updateSegmentBidirectionalStats } from './utils/updateSegmentationStats
 import { generateSegmentationCSVReport } from './utils/generateSegmentationCSVReport';
 import { getUpdatedViewportsForSegmentation } from './utils/hydrationUtils';
 import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
-import { isMeasurementWithinViewport } from './utils/isMeasurementWithinViewport';
-import { getCenterExtent } from './utils/getCenterExtent';
 import { EasingFunctionEnum } from './utils/transitions';
 import { createSegmentationForViewport } from './utils/createSegmentationForViewport';
 import { utilities as segmentationUtilities } from '@cornerstonejs/tools/segmentation';
@@ -143,9 +148,32 @@ function commandsModule({
     return getViewportEnabledElement(viewportId);
   }
 
+  // Resolves the cornerstone viewport for a command: the given viewport id, else the
+  // active one. Returns undefined when nothing is enabled.
+  function _resolveViewport(viewportId?: string) {
+    const enabledElement = viewportId
+      ? _getViewportEnabledElement(viewportId)
+      : _getActiveViewportEnabledElement();
+    return enabledElement?.viewport;
+  }
+
   function _getActiveViewportToolGroupId() {
     const viewport = _getActiveViewportEnabledElement();
-    return toolGroupService.getToolGroupForViewport(viewport.id);
+    const toolGroup = viewport && toolGroupService.getToolGroupForViewport(viewport.id);
+    return toolGroup?.id;
+  }
+
+  function _usesPrimaryActivation(bindings) {
+    if (!bindings?.length) {
+      return true;
+    }
+
+    return bindings.some(
+      binding =>
+        binding.mouseButton === Enums.MouseBindings.Primary &&
+        binding.modifierKey == null &&
+        binding.numTouchPoints == null
+    );
   }
 
   function _getActiveSegmentationInfo() {
@@ -221,23 +249,11 @@ function commandsModule({
         viewport.setViewReference(metadata);
         viewport.render();
 
-        /**
+        // If the measurement is not visible inside the current viewport, move the
-         * If the measurement is not visible inside the current viewport,
+        // camera to it. The operations backend handles the lane: legacy re-centers
-         * we need to move the camera to the measurement.
+        // in-plane (getCamera/setCamera), native skips it (no in-plane pan yet, CS-14)
-         */
+        // since setViewReference above already navigated to the measurement's slice.
-        if (!isMeasurementWithinViewport(viewport, measurement)) {
+        if (ops.centerOnMeasurement(viewport, measurement)) {
-          const camera = viewport.getCamera();
-          const { focalPoint: cameraFocalPoint, position: cameraPosition } = camera;
-          const { center, extent } = getCenterExtent(measurement);
-          const position = vec3.sub(vec3.create(), cameraPosition, cameraFocalPoint);
-          vec3.add(position, position, center);
-          viewport.setCamera({ focalPoint: center, position: position as any });
-          /** Zoom out if the measurement is too large */
-          const measurementSize = vec3.dist(extent.min, extent.max);
-          if (measurementSize > camera.parallelScale) {
-            const scaleFactor = measurementSize / camera.parallelScale;
-            viewport.setZoom(viewport.getZoom() / scaleFactor);
-          }
           viewport.render();
         }
 
@@ -290,6 +306,20 @@ function commandsModule({
       commandsManager.run('setDisplaySetsForViewports', { viewportsToUpdate: updatedViewports });
     },
 
+    /**
+     * Cancels any in-progress annotation manipulation (e.g. drawing a Spline,
+     * Livewire or PlanarFreehand contour) on the active viewport. Reached on
+     * Escape via the `cancelActiveOperation` command. `cancelActiveManipulations`
+     * invokes the `cancel` method of each active/passive tool that has an
+     * in-progress annotation, so it is a no-op when nothing is being drawn.
+     */
+    cancelMeasurement: () => {
+      const element = _getActiveViewportEnabledElement()?.viewport?.element;
+      if (element) {
+        cancelActiveManipulations(element);
+      }
+    },
+
     hydrateSecondaryDisplaySet: async ({ displaySet, viewportId }) => {
       if (!displaySet) {
         return;
@@ -310,7 +340,7 @@ function commandsModule({
           // Todo: check if PMAP modality should be handled such as SEG
           displaySet.Modality !== 'SEG'
             ? SegmentationRepresentations.Contour
-            : viewport.type === CoreEnums.ViewportType.VOLUME_3D
+            : isVolume3DViewportType(viewport)
               ? SegmentationRepresentations.Surface
               : SegmentationRepresentations.Labelmap;
 
@@ -341,6 +371,9 @@ function commandsModule({
         const results = commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
           viewportId,
           displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
+          // RTSTRUCT-on-next pins the referenced image to stack mode on hydrate;
+          // see the policy's rationale in utils/nextViewportPolicies.
+          viewportType: getHydrationViewportTypeForModality(displaySet.Modality),
         });
 
         const disableEditing = customizationService.getCustomization(
@@ -398,12 +431,31 @@ function commandsModule({
 
       const { segmentationId: targetId, segmentIndex: targetIndex } = targetSegmentation;
 
+      // Check if the segment has voxels before computing bidirectional measurement
+      const uniqueSegmentIndices = cstUtils.segmentation.getUniqueSegmentIndices(targetId);
+      const hasVoxels = uniqueSegmentIndices.includes(targetIndex);
+
+      if (!hasVoxels) {
+        uiNotificationService.show({
+          title: i18n.t('SegmentationPanel:Segment Bidirectional'),
+          message: i18n.t(
+            'SegmentationPanel:Draw a segment before using bidirectional measurement'
+          ),
+          type: 'warning',
+        });
+        return;
+      }
+
       // Get bidirectional measurement data
       const bidirectionalData = await cstUtils.segmentation.getSegmentLargestBidirectional({
         segmentationId: targetId,
         segmentIndices: [targetIndex],
       });
 
+      if (!bidirectionalData.length) {
+        return;
+      }
+
       const activeViewportId = viewportGridService.getActiveViewportId();
 
       // Process each bidirectional measurement
@@ -445,7 +497,7 @@ function commandsModule({
         measurement => measurement.segmentIndex === targetIndex
       );
       commandsManager.run('jumpToMeasurement', {
-        uid: activeBidirectional.annotationUID,
+        uid: activeBidirectional?.annotationUID,
       });
     },
     interpolateLabelmap: () => {
@@ -737,6 +789,9 @@ function commandsModule({
      * Also marks any provided display measurements isActive value
      */
     jumpToMeasurement: ({ uid, displayMeasurements = [] }) => {
+      if (!uid) {
+        return;
+      }
       measurementService.jumpToMeasurement(viewportGridService.getActiveViewportId(), uid);
       for (const measurement of displayMeasurements) {
         measurement.isActive = measurement.uid === uid;
@@ -868,34 +923,28 @@ function commandsModule({
       const windowWidthNum = Number(windowWidth);
       const windowCenterNum = Number(windowCenter);
 
-      // get actor from the viewport
       const renderingEngine = cornerstoneViewportService.getRenderingEngine();
       const viewport = renderingEngine.getViewport(viewportId);
 
-      const { lower, upper } = csUtils.windowLevel.toLowHighRange(windowWidthNum, windowCenterNum);
+      // Stale/invalid viewport ids resolve to undefined; bail out before the VOI
-
+      // apply + render below would throw.
-      if (viewport instanceof BaseVolumeViewport) {
+      if (!viewport) {
-        const volumeId = actions.getVolumeIdForDisplaySet({
+        return;
-          viewportId,
-          displaySetInstanceUID,
-        });
-        viewport.setProperties(
-          {
-            voiRange: {
-              upper,
-              lower,
-            },
-          },
-          volumeId
-        );
-      } else {
-        viewport.setProperties({
-          voiRange: {
-            upper,
-            lower,
-          },
-        });
       }
+
+      // Legacy volume viewports target a specific volume; the command owns that
+      // resolution (it needs the service). The operations backend applies the VOI
+      // (legacy setProperties vs native setDisplaySetPresentation on the active binding).
+      const volumeId = isVolumeViewportType(viewport)
+        ? actions.getVolumeIdForDisplaySet({ viewportId, displaySetInstanceUID })
+        : undefined;
+
+      ops.setWindowLevel(viewport, {
+        windowWidth: windowWidthNum,
+        windowCenter: windowCenterNum,
+        volumeId,
+        displaySetInstanceUID,
+      });
       viewport.render();
     },
     toggleViewportColorbar: ({ viewportId, displaySetInstanceUIDs, options = {} }) => {
@@ -950,8 +999,12 @@ function commandsModule({
     },
     getVolumeIdForDisplaySet: ({ viewportId, displaySetInstanceUID }) => {
       const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
-      if (viewport instanceof BaseVolumeViewport) {
+      // `instanceof BaseVolumeViewport` is false for GenericViewport compat adapters,
-        const volumeIds = viewport.getAllVolumeIds();
+      // so use the capability guard instead (cornerstone 5.x generic-viewport guide).
+      // A stack-mode adapter passes the guard but getAllVolumeIds() returns [], so the
+      // result is the same null as before on stacks.
+      if (csUtils.viewportSupportsVolumeId(viewport)) {
+        const volumeIds = (viewport as CoreTypes.IVolumeViewport).getAllVolumeIds();
         const volumeId = volumeIds.find(id => id.includes(displaySetInstanceUID));
         return volumeId;
       }
@@ -995,32 +1048,48 @@ function commandsModule({
 
       toolIsEnabled ? toolGroup.setToolDisabled(toolName) : toolGroup.setToolEnabled(toolName);
     },
-    toggleActiveDisabledToolbar({ value, itemId, toolGroupId }) {
+    toggleActiveDisabledToolbar({ value, itemId, toolGroupId, toolGroupIds }) {
       const toolName = itemId || value;
-      toolGroupId = toolGroupId ?? _getActiveViewportToolGroupId();
+      const resolvedToolGroupIds = toolGroupIds?.length
-      const toolGroup = toolGroupService.getToolGroup(toolGroupId);
+        ? toolGroupIds
-      if (!toolGroup || !toolGroup.hasTool(toolName)) {
+        : [toolGroupId ?? _getActiveViewportToolGroupId()];
-        return;
-      }
 
-      const toolIsActive = [
+      resolvedToolGroupIds.forEach(toolGroupId => {
-        Enums.ToolModes.Active,
+        const toolGroup = toolGroupService.getToolGroup(toolGroupId);
-        Enums.ToolModes.Enabled,
+        if (!toolGroup || !toolGroup.hasTool(toolName)) {
-        Enums.ToolModes.Passive,
+          return;
-      ].includes(toolGroup.getToolOptions(toolName).mode);
-
-      toolIsActive
-        ? toolGroup.setToolDisabled(toolName)
-        : actions.setToolActive({ toolName, toolGroupId });
-
-      // we should set the previously active tool to active after we set the
-      // current tool disabled
-      if (toolIsActive) {
-        const prevToolName = toolGroup.getPrevActivePrimaryToolName();
-        if (prevToolName !== toolName) {
-          actions.setToolActive({ toolName: prevToolName, toolGroupId });
         }
-      }
+
+        const toolIsActive = [
+          Enums.ToolModes.Active,
+          Enums.ToolModes.Enabled,
+          Enums.ToolModes.Passive,
+        ].includes(toolGroup.getToolOptions(toolName).mode);
+
+        if (toolIsActive) {
+          toolGroup.setToolDisabled(toolName);
+
+          const bindings = toolGroupService.getToolBindings(toolGroupId, toolName);
+
+          if (_usesPrimaryActivation(bindings)) {
+            // we should set the previously active tool to active after we set the
+            // current tool disabled
+            const prevToolName = toolGroup.getPrevActivePrimaryToolName();
+            if (prevToolName !== toolName) {
+              actions.setToolActive({ toolName: prevToolName, toolGroupId });
+            }
+          }
+
+          return;
+        }
+
+        const bindings = toolGroupService.getToolBindings(toolGroupId, toolName);
+        if (_usesPrimaryActivation(bindings)) {
+          actions.setToolActive({ toolName, toolGroupId, bindings });
+        } else {
+          toolGroup.setToolActive(toolName, { bindings });
+        }
+      });
     },
     setToolActiveToolbar: ({ value, itemId, toolName, toolGroupIds = [], bindings }) => {
       // Sometimes it is passed as value (tools with options), sometimes as itemId (toolbar buttons)
@@ -1114,25 +1183,11 @@ function commandsModule({
       viewportId?: string;
       newValue?: 'toggle' | boolean;
     }) => {
-      const enabledElement = viewportId
+      const viewport = _resolveViewport(viewportId);
-        ? _getViewportEnabledElement(viewportId)
+      if (!viewport) {
-        : _getActiveViewportEnabledElement();
-
-      if (!enabledElement) {
         return;
       }
-
+      ops.flipHorizontal(viewport, newValue);
-      const { viewport } = enabledElement;
-
-      let flipHorizontal: boolean;
-      if (newValue === 'toggle') {
-        const { flipHorizontal: currentHorizontalFlip } = viewport.getCamera();
-        flipHorizontal = !currentHorizontalFlip;
-      } else {
-        flipHorizontal = newValue;
-      }
-
-      viewport.setCamera({ flipHorizontal });
       viewport.render();
     },
     flipViewportVertical: ({
@@ -1142,78 +1197,36 @@ function commandsModule({
       viewportId?: string;
       newValue?: 'toggle' | boolean;
     }) => {
-      const enabledElement = viewportId
+      const viewport = _resolveViewport(viewportId);
-        ? _getViewportEnabledElement(viewportId)
+      if (!viewport) {
-        : _getActiveViewportEnabledElement();
-
-      if (!enabledElement) {
         return;
       }
-
+      ops.flipVertical(viewport, newValue);
-      const { viewport } = enabledElement;
-
-      let flipVertical: boolean;
-      if (newValue === 'toggle') {
-        const { flipVertical: currentVerticalFlip } = viewport.getCamera();
-        flipVertical = !currentVerticalFlip;
-      } else {
-        flipVertical = newValue;
-      }
-      viewport.setCamera({ flipVertical });
       viewport.render();
     },
     invertViewport: ({ element }) => {
-      let enabledElement;
+      const viewport = element === undefined ? _resolveViewport() : element.viewport;
-
+      if (!viewport) {
-      if (element === undefined) {
-        enabledElement = _getActiveViewportEnabledElement();
-      } else {
-        enabledElement = element;
-      }
-
-      if (!enabledElement) {
         return;
       }
-
+      ops.invert(viewport);
-      const { viewport } = enabledElement;
-
-      const { invert } = viewport.getProperties();
-      viewport.setProperties({ invert: !invert });
       viewport.render();
     },
     resetViewport: () => {
-      const enabledElement = _getActiveViewportEnabledElement();
+      const viewport = _resolveViewport();
-
+      if (!viewport) {
-      if (!enabledElement) {
         return;
       }
-
+      ops.reset(viewport);
-      const { viewport } = enabledElement;
-
-      viewport.resetProperties?.();
-      viewport.resetCamera();
-
       viewport.render();
     },
     scaleViewport: ({ direction }) => {
-      const enabledElement = _getActiveViewportEnabledElement();
+      const viewport = _resolveViewport();
-      const scaleFactor = direction > 0 ? 0.9 : 1.1;
+      if (!viewport) {
-
-      if (!enabledElement) {
         return;
       }
-      const { viewport } = enabledElement;
+      ops.scaleBy(viewport, direction);
-
+      viewport.render();
-      if (viewport instanceof StackViewport) {
-        if (direction) {
-          const { parallelScale } = viewport.getCamera();
-          viewport.setCamera({ parallelScale: parallelScale * scaleFactor });
-          viewport.render();
-        } else {
-          viewport.resetCamera();
-          viewport.render();
-        }
-      }
     },
 
     /** Jumps the active viewport or the specified one to the given slice index */
@@ -1234,9 +1247,9 @@ function commandsModule({
       // -> Copied from cornerstone3D jumpToSlice\_getImageSliceData()
       let numberOfSlices = 0;
 
-      if (viewport instanceof StackViewport) {
+      if (isStackViewportType(viewport)) {
         numberOfSlices = viewport.getImageIds().length;
-      } else if (viewport instanceof VolumeViewport) {
+      } else if (isOrthographicViewportType(viewport)) {
         numberOfSlices = csUtils.getImageSliceDataForVolumeViewport(viewport).numberOfSlices;
       } else {
         throw new Error('Unsupported viewport type');
@@ -1292,24 +1305,15 @@ function commandsModule({
       // HP takes priority over the default opacity
       colormap = { ...colormap, opacity: hpOpacity || opacity };
 
-      if (viewport instanceof StackViewport) {
+      // The legacy orthographic branch resolves the volumeId from the display set;
-        viewport.setProperties({ colormap });
+      // fall back to the viewport's first display set (needs viewportGridService, so
+      // it is resolved here in the command rather than in the operations backend).
+      if (isOrthographicViewportType(viewport) && !displaySetInstanceUID) {
+        const { viewports } = viewportGridService.getState();
+        displaySetInstanceUID = viewports.get(viewportId)?.displaySetInstanceUIDs[0];
       }
 
-      if (viewport instanceof VolumeViewport) {
+      ops.setColormap(viewport, { colormap, displaySetInstanceUID });
-        if (!displaySetInstanceUID) {
-          const { viewports } = viewportGridService.getState();
-          displaySetInstanceUID = viewports.get(viewportId)?.displaySetInstanceUIDs[0];
-        }
-
-        // ToDo: Find a better way of obtaining the volumeId that corresponds to the displaySetInstanceUID
-        const volumeId =
-          viewport
-            .getAllVolumeIds()
-            .find((_volumeId: string) => _volumeId.includes(displaySetInstanceUID)) ??
-          viewport.getVolumeId();
-        viewport.setProperties({ colormap }, volumeId);
-      }
 
       if (immediate) {
         viewport.render();
@@ -1415,9 +1419,7 @@ function commandsModule({
       if (!viewport) {
         return;
       }
-      viewport.setProperties({
+      ops.setPreset(viewport, preset);
-        preset,
-      });
       viewport.render();
     },
 
@@ -1429,20 +1431,10 @@ function commandsModule({
 
     setVolumeRenderingQulaity: ({ viewportId, volumeQuality }) => {
       const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
-      const { actor } = viewport.getActors()[0];
+      if (!viewport) {
-      const mapper = actor.getMapper();
+        return;
-      const image = mapper.getInputData();
+      }
-      const dims = image.getDimensions();
+      ops.setVolumeRenderingQuality(viewport, volumeQuality);
-      const spacing = image.getSpacing();
-      const spatialDiagonal = vec3.length(
-        vec3.fromValues(dims[0] * spacing[0], dims[1] * spacing[1], dims[2] * spacing[2])
-      );
-
-      let sampleDistance = spacing.reduce((a, b) => a + b) / 3.0;
-      sampleDistance /= volumeQuality > 1 ? 0.5 * volumeQuality ** 2 : 1.0;
-      const samplesPerRay = spatialDiagonal / sampleDistance + 1;
-      mapper.setMaximumSamplesPerRay(samplesPerRay);
-      mapper.setSampleDistance(sampleDistance);
       viewport.render();
     },
 
@@ -1453,27 +1445,10 @@ function commandsModule({
      */
     shiftVolumeOpacityPoints: ({ viewportId, shift }) => {
       const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
-      const { actor } = viewport.getActors()[0];
+      if (!viewport) {
-      const ofun = actor.getProperty().getScalarOpacity(0);
+        return;
-
-      const opacityPointValues = []; // Array to hold values
-      // Gather Existing Values
-      const size = ofun.getSize();
-      for (let pointIdx = 0; pointIdx < size; pointIdx++) {
-        const opacityPointValue = [0, 0, 0, 0];
-        ofun.getNodeValue(pointIdx, opacityPointValue);
-        // opacityPointValue now holds [xLocation, opacity, midpoint, sharpness]
-        opacityPointValues.push(opacityPointValue);
       }
-      // Add offset
+      ops.shiftVolumeOpacityPoints(viewport, shift);
-      opacityPointValues.forEach(opacityPointValue => {
-        opacityPointValue[0] += shift; // Change the location value
-      });
-      // Set new values
-      ofun.removeAllPoints();
-      opacityPointValues.forEach(opacityPointValue => {
-        ofun.addPoint(...opacityPointValue);
-      });
       viewport.render();
     },
 
@@ -1489,25 +1464,10 @@ function commandsModule({
 
     setVolumeLighting: ({ viewportId, options }) => {
       const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
-      const { actor } = viewport.getActors()[0];
+      if (!viewport) {
-      const property = actor.getProperty();
+        return;
-
-      if (options.shade !== undefined) {
-        property.setShade(options.shade);
       }
-
+      ops.setVolumeLighting(viewport, options);
-      if (options.ambient !== undefined) {
-        property.setAmbient(options.ambient);
-      }
-
-      if (options.diffuse !== undefined) {
-        property.setDiffuse(options.diffuse);
-      }
-
-      if (options.specular !== undefined) {
-        property.setSpecular(options.specular);
-      }
-
       viewport.render();
     },
     resetCrosshairs: ({ viewportId }) => {
@@ -1515,7 +1475,13 @@ function commandsModule({
 
       const getCrosshairInstances = toolGroupId => {
         const toolGroup = toolGroupService.getToolGroup(toolGroupId);
-        crosshairInstances.push(toolGroup.getToolInstance('Crosshairs'));
+        // Only fetch the instance when Crosshairs is registered in this tool
+        // group. getToolInstance logs a warning for an unregistered tool, and a
+        // viewport's default tool group does not always include Crosshairs (e.g.
+        // next viewports), which made Reset Viewport log a spurious warning.
+        if (toolGroup?.hasTool('Crosshairs')) {
+          crosshairInstances.push(toolGroup.getToolInstance('Crosshairs'));
+        }
       };
 
       if (!viewportId) {
@@ -1523,7 +1489,9 @@ function commandsModule({
         toolGroupIds.forEach(getCrosshairInstances);
       } else {
         const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
-        getCrosshairInstances(toolGroup.id);
+        if (toolGroup) {
+          getCrosshairInstances(toolGroup.id);
+        }
       }
 
       crosshairInstances.forEach(ins => {
@@ -1735,12 +1703,14 @@ function commandsModule({
      * Removes a segmentation from the viewport
      * @param props.segmentationId - The ID of the segmentation to remove
      */
-    removeSegmentationFromViewportCommand: ({ segmentationId }) => {
+    removeSegmentationFromViewportCommand: ({ segmentationId: displaySetInstanceUID }) => {
-      const { segmentationService, viewportGridService } = servicesManager.services;
+      const { viewportGridService } = servicesManager.services;
-      segmentationService.removeSegmentationRepresentations(
+      const viewportId = viewportGridService.getActiveViewportId();
-        viewportGridService.getActiveViewportId(),
+
-        { segmentationId }
+      commandsManager.runCommand('removeDisplaySetLayer', {
-      );
+        viewportId,
+        displaySetInstanceUID,
+      });
     },
 
     /**
@@ -1907,8 +1877,15 @@ function commandsModule({
      * Use it before initializing the toolGroup with the tools.
      */
     initializeSegmentLabelTool: ({ tools }) => {
-      const appConfig = extensionManager.appConfig;
+      const { customizationService } = servicesManager.services;
-      const segmentLabelConfig = appConfig.segmentation?.segmentLabel;
+      const segmentLabelConfig = customizationService.getCustomization(
+        'segmentation.segmentLabel'
+      ) as {
+        enabledByDefault?: boolean;
+        labelColor?: number[];
+        hoverTimeout?: number;
+        background?: string;
+      };
 
       if (segmentLabelConfig?.enabledByDefault) {
         const activeTools = tools?.active ?? [];
@@ -1968,6 +1945,24 @@ function commandsModule({
     rejectPreview: () => {
       actions._handlePreviewAction('reject');
     },
+    /**
+     * Generic Escape handler. A single Escape press should discard whatever the
+     * user has in progress, but that can be one of two unrelated things: a
+     * provisional segmentation preview, or an annotation being drawn. Rather
+     * than bind both `rejectPreview` and `cancelMeasurement` to `esc` (Mousetrap
+     * keeps only one handler per key, so the second silently shadows the first),
+     * this command orchestrates both single-purpose commands. Each is a no-op
+     * when its state is not active, so running both is safe and order-independent.
+     */
+    cancelActiveOperation: () => {
+      try {
+        actions.rejectPreview();
+      } catch (error) {
+        console.debug('Error rejecting active preview', error);
+      } finally {
+        actions.cancelMeasurement();
+      }
+    },
     clearMarkersForMarkerLabelmap: () => {
       const { viewport } = _getActiveViewportEnabledElement();
       const toolGroup = cornerstoneTools.ToolGroupManager.getToolGroupForViewport(viewport.id);
@@ -2065,24 +2060,45 @@ function commandsModule({
       }
       segmentationService.addSegment(activeSegmentation.segmentationId);
     },
-    loadSegmentationDisplaySetsForViewport: ({ viewportId, displaySetInstanceUIDs }) => {
+    loadSegmentationDisplaySetsForViewport: ({
+      viewportId,
+      displaySetInstanceUIDs,
+      viewportType,
+    }) => {
       const updatedViewports = getUpdatedViewportsForSegmentation({
         viewportId,
         servicesManager,
         displaySetInstanceUIDs,
       });
 
+      if (!updatedViewports?.length) {
+        return;
+      }
+
+      updatedViewports.forEach(({ viewportId: csViewportId }) => {
+        const csViewport = cornerstoneViewportService.getCornerstoneViewport(csViewportId);
+        csViewport?.setNeedsRender?.();
+      });
+
       actions.setDisplaySetsForViewports({
         viewportsToUpdate: updatedViewports.map(viewport => ({
           viewportId: viewport.viewportId,
           displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
+          // When the caller pins a viewportType (RTSTRUCT contour hydration on a
+          // native "next" viewport requests 'stack'), force it so the referenced
+          // image stays in that render mode instead of resolving to a volume slice.
+          ...(viewportType
+            ? { viewportOptions: { ...viewport.viewportOptions, viewportType } }
+            : {}),
         })),
       });
     },
     setViewportOrientation: ({ viewportId, orientation }) => {
       const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
 
-      if (!viewport || viewport.type !== CoreEnums.ViewportType.ORTHOGRAPHIC) {
+      // Accept any viewport already rendering volume content (legacy ORTHOGRAPHIC
+      // or a native viewport in volume mode) — both expose setOrientation().
+      if (!viewport || !getViewportAdapter(viewport).canReorientInPlace()) {
         console.warn('Orientation can only be set on volume viewports');
         return;
       }
@@ -2154,50 +2170,12 @@ function commandsModule({
       viewportId?: string;
       rotationMode?: 'apply' | 'set';
     }) => {
-      const enabledElement = viewportId
+      const viewport = _resolveViewport(viewportId);
-        ? _getViewportEnabledElement(viewportId)
+      if (!viewport) {
-        : _getActiveViewportEnabledElement();
-
-      if (!enabledElement) {
         return;
       }
-
+      ops.rotate(viewport, rotation, rotationMode);
-      const { viewport } = enabledElement;
+      viewport.render();
-
-      if (viewport instanceof BaseVolumeViewport) {
-        const camera = viewport.getCamera();
-        const rotAngle = (rotation * Math.PI) / 180;
-        const rotMat = mat4.identity(new Float32Array(16));
-        mat4.rotate(rotMat, rotMat, rotAngle, camera.viewPlaneNormal);
-        const rotatedViewUp = vec3.transformMat4(vec3.create(), camera.viewUp, rotMat);
-        viewport.setCamera({ viewUp: rotatedViewUp as CoreTypes.Point3 });
-        viewport.render();
-        return;
-      }
-
-      if (viewport.getRotation !== undefined) {
-        const { rotation: currentRotation } = viewport.getViewPresentation();
-        const newRotation =
-          rotationMode === 'apply'
-            ? (currentRotation + rotation + 360) % 360
-            : (() => {
-                // In 'set' mode, account for the effect horizontal/vertical flips
-                // have on the perceived rotation direction. A single flip mirrors
-                // the image and inverses rotation direction, while two flips
-                // restore the original parity. We therefore invert the rotation
-                // angle when an odd number of flips are applied so that the
-                // requested absolute rotation matches the user expectation.
-                const { flipHorizontal = false, flipVertical = false } =
-                  viewport.getViewPresentation();
-
-                const flipsParity = (flipHorizontal ? 1 : 0) + (flipVertical ? 1 : 0);
-                const effectiveRotation = flipsParity % 2 === 1 ? -rotation : rotation;
-
-                return (effectiveRotation + 360) % 360;
-              })();
-        viewport.setViewPresentation({ rotation: newRotation });
-        viewport.render();
-      }
     },
     startRecordingForAnnotationGroup: () => {
       cornerstoneTools.AnnotationTool.startGroupRecording();
@@ -2340,14 +2318,25 @@ function commandsModule({
       targetSegmentInfo?: SegmentInfo;
     }) => {
       if (!targetSegmentInfo) {
+        const sourceSegmentation = segmentationService.getSegmentation(
+          sourceSegmentInfo.segmentationId
+        );
+        const sourceCachedStats =
+          sourceSegmentation?.segments?.[sourceSegmentInfo.segmentIndex]?.cachedStats;
+
         targetSegmentInfo = {
           segmentationId: sourceSegmentInfo.segmentationId,
           segmentIndex: segmentationService.getNextAvailableSegmentIndex(
             sourceSegmentInfo.segmentationId
           ),
         };
+
+        // Copy source cachedStats so jump-to-segment navigation works on the duplicate segment.
         segmentationService.addSegment(targetSegmentInfo.segmentationId, {
           segmentIndex: targetSegmentInfo.segmentIndex,
+          ...(sourceCachedStats && {
+            cachedStats: csUtils.deepClone(sourceCachedStats) as Record<string, unknown>,
+          }),
         });
       }
 
@@ -2470,6 +2459,9 @@ function commandsModule({
     removeMeasurement: {
       commandFn: actions.removeMeasurement,
     },
+    cancelMeasurement: {
+      commandFn: actions.cancelMeasurement,
+    },
     toggleLockMeasurement: {
       commandFn: actions.toggleLockMeasurement,
     },
@@ -2718,6 +2710,7 @@ function commandsModule({
     toggleSegmentSelect: actions.toggleSegmentSelect,
     acceptPreview: actions.acceptPreview,
     rejectPreview: actions.rejectPreview,
+    cancelActiveOperation: actions.cancelActiveOperation,
     toggleUseCenterSegmentIndex: actions.toggleUseCenterSegmentIndex,
     toggleLabelmapAssist: actions.toggleLabelmapAssist,
     interpolateScrollForMarkerLabelmap: actions.interpolateScrollForMarkerLabelmap,

extensions/cornerstone/src/components/DicomUpload/DicomUploadProgressItem.tsx

@@ -60,11 +60,11 @@ const DicomUploadProgressItem = memo(
             />
           );
         case UploadStatus.InProgress:
-          return <Icons.ByName name="icon-transferring" />;
+          return <Icons.ByName name="icon-transferring" className="text-highlight" />;
         case UploadStatus.Failed:
-          return <Icons.ByName name="icon-alert-small" />;
+          return <Icons.ByName name="icon-alert-small" className="text-destructive" />;
         case UploadStatus.Cancelled:
-          return <Icons.ByName name="icon-alert-outline" />;
+          return <Icons.ByName name="icon-alert-outline" className="text-highlight" />;
         default:
           return <></>;
       }

extensions/cornerstone/src/components/ExportSegmentationSubMenuItem.tsx

@@ -5,9 +5,7 @@ import {
   DropdownMenuSubTrigger,
   DropdownMenuPortal,
   DropdownMenuSubContent,
-  DropdownMenuLabel,
   DropdownMenuItem,
-  DropdownMenuSeparator,
   Icons,
 } from '@ohif/ui-next';
 
@@ -19,8 +17,6 @@ interface ExportSegmentationSubMenuItemProps {
   allowExport: boolean;
   actions: {
     storeSegmentation: (segmentationId: string, modality?: string) => Promise<unknown>;
-    onSegmentationDownloadRTSS: (segmentationId: string) => void;
-    onSegmentationDownload: (segmentationId: string) => void;
     downloadCSVSegmentationReport: (segmentationId: string) => void;
   };
 }
@@ -37,14 +33,10 @@ export const ExportSegmentationSubMenuItem: React.FC<ExportSegmentationSubMenuIt
     <DropdownMenuSub>
       <DropdownMenuSubTrigger className="pl-1">
         <Icons.Export className="text-foreground" />
-        <span className="pl-2">{t('Download & Export')}</span>
+        <span className="pl-2">{t('Export')}</span>
       </DropdownMenuSubTrigger>
       <DropdownMenuPortal>
         <DropdownMenuSubContent>
-          <DropdownMenuLabel className="flex items-center pl-0">
-            <Icons.Download className="h-5 w-5" />
-            <span className="pl-1">{t('Download')}</span>
-          </DropdownMenuLabel>
           {segmentationRepresentationType === SegmentationRepresentations.Labelmap && (
             <DropdownMenuItem
               onClick={e => {
@@ -56,31 +48,6 @@ export const ExportSegmentationSubMenuItem: React.FC<ExportSegmentationSubMenuIt
               {t('CSV Report')}
             </DropdownMenuItem>
           )}
-          {segmentationRepresentationType === SegmentationRepresentations.Labelmap && (
-            <DropdownMenuItem
-              onClick={e => {
-                e.preventDefault();
-                actions.onSegmentationDownload(segmentationId);
-              }}
-              disabled={!allowExport}
-            >
-              {t('DICOM SEG')}
-            </DropdownMenuItem>
-          )}
-          <DropdownMenuItem
-            onClick={e => {
-              e.preventDefault();
-              actions.onSegmentationDownloadRTSS(segmentationId);
-            }}
-            disabled={!allowExport}
-          >
-            {t('DICOM RTSS')}
-          </DropdownMenuItem>
-          <DropdownMenuSeparator />
-          <DropdownMenuLabel className="flex items-center pl-0">
-            <Icons.Export className="h-5 w-5" />
-            <span className="pl-1 pt-1">{t('Export')}</span>
-          </DropdownMenuLabel>
           {segmentationRepresentationType === SegmentationRepresentations.Labelmap && (
             <DropdownMenuItem
               onClick={e => {

extensions/cornerstone/src/components/TrackingStatus/TrackingStatus.tsx

@@ -18,7 +18,7 @@ function TrackingStatus({ viewportId }: { viewportId: string }) {
       <Tooltip>
         <TooltipTrigger asChild>
           <span>
-            <Icons.StatusTracking className="h-4 w-4" />
+            <Icons.StatusTracking className="h-4 w-4 text-highlight" />
           </span>
         </TooltipTrigger>
         <TooltipContent side="bottom">

extensions/cornerstone/src/components/ViewportColorbar/ViewportColorbarsContainer.tsx

@@ -83,10 +83,16 @@ const ViewportColorbarsContainer = memo(function ViewportColorbarsContainer({
         const { displaySetInstanceUID: dsUID } =
           displaySetService.getDisplaySetByUID(displaySetInstanceUID) ?? {};
 
+        // Default the fused (horizontal) colorbar to the foreground (e.g. the PT
+        // in a PET/CT fusion), which is the meaningful layer. Only fall back to
+        // the background (CT) colorbar when the foreground has been explicitly
+        // faded to zero opacity. Previously a null/undefined opacity (e.g. before
+        // the hook resolved it) also fell through to the background, so the
+        // colorbar would flicker between CT and PT depending on timing.
         const targetUID =
-          opacity === 0 || opacity == null
+          opacity === 0
             ? backgroundDisplaySet?.displaySetInstanceUID
-            : foregroundDisplaySets[0].displaySetInstanceUID;
+            : foregroundDisplaySets[0]?.displaySetInstanceUID;
 
         return dsUID === targetUID;
       });

extensions/cornerstone/src/components/ViewportDataOverlaySettingMenu/ViewportDataOverlayMenu.tsx

@@ -1,4 +1,4 @@
-import React, { useState } from 'react';
+import React, { useEffect, useState } from 'react';
 import {
   Button,
   Icons,
@@ -43,6 +43,10 @@ function ViewportDataOverlayMenu({ viewportId }: withAppTypes<{ viewportId: stri
 
   const [thresholdOpacityEnabled, setThresholdOpacityEnabled] = useState(false);
 
+  useEffect(() => {
+    setOptimisticOverlayDisplaySets(overlayDisplaySets);
+  }, [backgroundDisplaySet?.displaySetInstanceUID, overlayDisplaySets]);
+
   /**
    * Change the background display set
    */
@@ -482,7 +486,10 @@ function ViewportDataOverlayMenu({ viewportId }: withAppTypes<{ viewportId: stri
               }
             }}
           >
-            <SelectTrigger className="flex-1">
+            <SelectTrigger
+              className="flex-1"
+              data-cy={`overlay-background-ds-select-${viewportId}`}
+            >
               <SelectValue>
                 {(
                   backgroundDisplaySet?.SeriesDescription ||

extensions/cornerstone/src/components/ViewportOrientationMenu/ViewportOrientationMenu.tsx

@@ -2,6 +2,7 @@ import React from 'react';
 import { cn, Icons, useIconPresentation } from '@ohif/ui-next';
 import { useSystem } from '@ohif/core';
 import { Enums } from '@cornerstonejs/core';
+import { getViewportAdapter } from '../../services/ViewportService/adapter';
 import { Popover, PopoverTrigger, PopoverContent, Button, useViewportGrid } from '@ohif/ui-next';
 
 function ViewportOrientationMenu({
@@ -36,8 +37,6 @@ function ViewportOrientationMenu({
 
   const handleOrientationChange = (orientation: string) => {
     setCurrentOrientation(orientation);
-    const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportIdToUse);
-    const currentViewportType = viewportInfo?.getViewportType();
 
     if (!displaySets.length) {
       return;
@@ -72,8 +71,17 @@ function ViewportOrientationMenu({
 
     const displaySetUIDs = displaySets.map(ds => ds.displaySetInstanceUID);
 
-    // If viewport is not already a volume type, we need to convert it
+    // A viewport already rendering in volume mode (legacy ORTHOGRAPHIC OR a next
-    if (currentViewportType !== Enums.ViewportType.ORTHOGRAPHIC) {
+    // viewport that reports planarNext but renders volume actors, e.g. a CT+PET
+    // fusion) can be reoriented in place. Recreating it via setDisplaySetsForViewports
+    // would pass empty displaySetOptions and drop per-display-set presentation such
+    // as the PET overlay colormap/opacity. Only the genuine stack -> volume (MPR)
+    // case needs recreation.
+    const csViewport = cornerstoneViewportService.getCornerstoneViewport(viewportIdToUse);
+    const isVolumeMode = !!csViewport && getViewportAdapter(csViewport).canReorientInPlace();
+
+    // If viewport is not already in volume mode, we need to convert it
+    if (!isVolumeMode) {
       // Configure the viewport to be a volume viewport with current display sets
       const updatedViewport = {
         viewportId: viewportIdToUse,

extensions/cornerstone/src/components/ViewportWindowLevel/ViewportWindowLevel.tsx

@@ -2,7 +2,7 @@ import React, { useEffect, useCallback, useState, ReactElement, useMemo } from '
 import PropTypes from 'prop-types';
 import debounce from 'lodash.debounce';
 import { PanelSection, WindowLevel } from '@ohif/ui-next';
-import { BaseVolumeViewport, Enums, eventTarget } from '@cornerstonejs/core';
+import { Enums, eventTarget, utilities as csUtils, Types } from '@cornerstonejs/core';
 import { useActiveViewportDisplaySets } from '@ohif/core';
 import {
   getNodeOpacity,
@@ -27,10 +27,16 @@ const ViewportWindowLevel = ({
   const getViewportsWithVolumeIds = useCallback(
     (volumeIds: string[]) => {
       const renderingEngine = cornerstoneViewportService.getRenderingEngine();
-      const viewports = renderingEngine.getVolumeViewports();
+      // getVolumeViewports() was removed in the GenericViewport architecture
+      // (a PLANAR_NEXT viewport can be volume-capable without being a VolumeViewport).
+      // Official replacement: getViewports() + the viewportSupportsVolumeCompatibility
+      // capability guard (cornerstone codemod cornerstone3d/5/generic-viewport).
+      const viewports = renderingEngine
+        .getViewports()
+        .filter(csUtils.viewportSupportsVolumeCompatibility);
 
       return viewports.filter(vp => {
-        const viewportVolumeIds = vp instanceof BaseVolumeViewport ? vp.getAllVolumeIds() : [];
+        const viewportVolumeIds = (vp as Types.IVolumeViewport).getAllVolumeIds();
         return (
           volumeIds.length === viewportVolumeIds.length &&
           volumeIds.every(volumeId => viewportVolumeIds.includes(volumeId))
@@ -124,8 +130,9 @@ const ViewportWindowLevel = ({
         return;
       }
 
-      const viewportVolumeIds =
+      const viewportVolumeIds = csUtils.viewportSupportsVolumeId(viewport)
-        viewport instanceof BaseVolumeViewport ? viewport.getAllVolumeIds() : [];
+        ? (viewport as Types.IVolumeViewport).getAllVolumeIds()
+        : [];
       const viewports = getViewportsWithVolumeIds(viewportVolumeIds);
 
       viewports.forEach(vp => {

extensions/cornerstone/src/components/ViewportWindowLevel/utils.ts

@@ -2,6 +2,7 @@ import { cache as cs3DCache, Types } from '@cornerstonejs/core';
 import vtkColorMaps from '@kitware/vtk.js/Rendering/Core/ColorTransferFunction/ColorMaps';
 import { utilities as csUtils } from '@cornerstonejs/core';
 import { getViewportVolumeHistogram } from './getViewportVolumeHistogram';
+import { getViewportAdapter } from '../../services/ViewportService/adapter';
 
 /**
  * Gets node opacity from volume actor
@@ -101,8 +102,18 @@ export const getWindowLevelsData = async (
     return [];
   }
 
-  const volumeIds = (viewport as Types.IBaseVolumeViewport).getAllVolumeIds();
+  // The per-volume histogram WL panel is a legacy volume-viewport feature; the
-  const viewportProperties = viewport.getProperties();
+  // adapter reports no volumeIds for native viewports (and legacy stacks), so
+  // those degrade gracefully to no histogram rows rather than erroring; the
+  // native WL path is driven by setViewportWindowLevel.
+  // TODO(next): port per-volume histograms to the native volume API.
+  const adapter = getViewportAdapter(viewport);
+  const volumeIds = adapter.getVolumeIds();
+  if (!volumeIds.length) {
+    return [];
+  }
+
+  const viewportProperties = adapter.getPresentation();
   const { voiRange } = viewportProperties || {};
   const viewportVoi = voiRange
     ? {

extensions/cornerstone/src/components/WindowLevelActionMenu/WindowLevel.tsx

@@ -1,15 +1,54 @@
 import React, { ReactElement, useEffect, useRef, useState } from 'react';
 import { AllInOneMenu, ScrollArea, Switch, Tabs, TabsList, TabsTrigger } from '@ohif/ui-next';
 import { useViewportRendering } from '../../hooks/useViewportRendering';
+import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
 import { WindowLevelPreset } from '../../types/WindowLevel';
 import { useTranslation } from 'react-i18next';
 
 export function WindowLevel({ viewportId }: { viewportId?: string } = {}): ReactElement {
   const { t } = useTranslation('WindowLevelActionMenu');
-  const { viewportDisplaySets } = useViewportRendering(viewportId);
+  const { viewportDisplaySets, foregroundDisplaySets } = useViewportDisplaySets(viewportId);
+  // Default the active tab to the foreground layer (e.g. the PT in a PET/CT
+  // fusion), matching the other window-level controls, instead of the grayscale
+  // background (CT) at index 0. The CT/PT tabs still let the user switch.
+  const defaultDisplaySetUID =
+    foregroundDisplaySets?.length > 0
+      ? foregroundDisplaySets[foregroundDisplaySets.length - 1].displaySetInstanceUID
+      : viewportDisplaySets?.[0]?.displaySetInstanceUID;
   const [activeDisplaySetUID, setActiveDisplaySetUID] = useState<string | undefined>(
-    viewportDisplaySets?.[0]?.displaySetInstanceUID
+    defaultDisplaySetUID
   );
+  // Tracks whether the user has explicitly picked a tab, so the foreground-default
+  // sync below stops overriding their choice.
+  const userSelectedRef = useRef(false);
+
+  // Adopt the foreground default if the display sets resolve after first render
+  // (and the user has not picked a tab yet). This must re-sync even when the
+  // initial render already seeded `activeDisplaySetUID` with the CT fallback
+  // (because `foregroundDisplaySets` was still empty at mount) — otherwise the
+  // tab stays pinned to CT once the foreground (PT) layer resolves.
+  useEffect(() => {
+    // If the active tab's display set is no longer in the viewport (e.g. the
+    // viewport switched to a different study/series), drop the now-stale
+    // selection — including a user pick — so it re-defaults instead of leaving an
+    // invalid UID that later fails validateActiveDisplaySet.
+    const activeStillPresent = viewportDisplaySets?.some(
+      ds => ds.displaySetInstanceUID === activeDisplaySetUID
+    );
+    if (activeDisplaySetUID && viewportDisplaySets?.length && !activeStillPresent) {
+      userSelectedRef.current = false;
+      setActiveDisplaySetUID(defaultDisplaySetUID);
+      return;
+    }
+
+    if (
+      !userSelectedRef.current &&
+      defaultDisplaySetUID &&
+      activeDisplaySetUID !== defaultDisplaySetUID
+    ) {
+      setActiveDisplaySetUID(defaultDisplaySetUID);
+    }
+  }, [activeDisplaySetUID, defaultDisplaySetUID, viewportDisplaySets]);
 
   // Use the hook with the active display set
   const { windowLevelPresets, setWindowLevel } = useViewportRendering(viewportId, {
@@ -49,6 +88,7 @@ export function WindowLevel({ viewportId }: { viewportId?: string } = {}): React
           <Tabs
             value={activeDisplaySetUID}
             onValueChange={displaySetUID => {
+              userSelectedRef.current = true;
               setActiveDisplaySetUID(displaySetUID);
             }}
           >

extensions/cornerstone/src/customizations/CustomDropdownMenuContent.tsx

@@ -64,12 +64,6 @@ export const CustomDropdownMenuContent = () => {
         context: 'CORNERSTONE',
       });
     },
-    onSegmentationDownloadRTSS: segmentationId => {
-      commandsManager.run('downloadRTSS', { segmentationId });
-    },
-    onSegmentationDownload: segmentationId => {
-      commandsManager.run('downloadSegmentation', { segmentationId });
-    },
     downloadCSVSegmentationReport: segmentationId => {
       commandsManager.run('downloadCSVSegmentationReport', { segmentationId });
     },

extensions/cornerstone/src/customizations/captureViewportModalCustomization.tsx

@@ -1,5 +1,5 @@
 import React, { useState, useEffect } from 'react';
-import { ImageModal, FooterAction } from '@ohif/ui-next';
+import { ImageModal, FooterAction, toast } from '@ohif/ui-next';
 import { useTranslation } from 'react-i18next';
 const MAX_TEXTURE_SIZE = 10000;
 const DEFAULT_FILENAME = 'image';
@@ -16,6 +16,7 @@ interface ViewportDownloadFormNewProps {
   onEnableViewport: (element: HTMLElement) => void;
   onDisableViewport: () => void;
   onDownload: (filename: string, fileType: string) => void;
+  onCopyToClipboard: () => void;
   warningState: { enabled: boolean; value: string };
 }
 
@@ -32,6 +33,7 @@ function ViewportDownloadFormNew({
   onEnableViewport,
   onDisableViewport,
   onDownload,
+  onCopyToClipboard,
 }: ViewportDownloadFormNewProps) {
   const [viewportElement, setViewportElement] = useState<HTMLElement | null>(null);
   const [showWarningMessage, setShowWarningMessage] = useState(true);
@@ -138,13 +140,27 @@ function ViewportDownloadFormNew({
               <FooterAction.Secondary onClick={onClose}>
                 {t('Common:Cancel')}
               </FooterAction.Secondary>
+              <FooterAction.Secondary
+                onClick={async () => {
+                  try {
+                    await onCopyToClipboard();
+                    toast.success(t('Image copied to clipboard'));
+                    onClose();
+                  } catch (error) {
+                    toast.error(t('Failed to copy image to clipboard'));
+                    console.error('Failed to copy to clipboard:', error);
+                  }
+                }}
+              >
+                {t('Copy to Clipboard')}
+              </FooterAction.Secondary>
               <FooterAction.Primary
                 onClick={() => {
                   onDownload(filename || DEFAULT_FILENAME, fileType);
                   onClose();
                 }}
               >
-                {t('Common:Save')}
+                {t('Save Image')}
               </FooterAction.Primary>
             </FooterAction.Right>
           </FooterAction>

extensions/cornerstone/src/customizations/segmentationToolbarCustomization.ts

@@ -1,8 +1,11 @@
 import type { Button } from '@ohif/core/types';
-import { ViewportGridService } from '@ohif/core';
+import { ViewportGridService, ToolbarService } from '@ohif/core';
 import i18n from 'i18next';
 
-import { MIN_SEGMENTATION_DRAWING_RADIUS, MAX_SEGMENTATION_DRAWING_RADIUS } from './constants';
+const { TOOLBAR_SECTIONS } = ToolbarService;
+
+export const MIN_SEGMENTATION_DRAWING_RADIUS = 0.5;
+export const MAX_SEGMENTATION_DRAWING_RADIUS = 99.5;
 
 const setToolActiveToolbar = {
   commandName: 'setToolActiveToolbar',
@@ -20,155 +23,16 @@ const callbacks = (toolName: string) => [
   },
 ];
 
-export const toolbarButtons: Button[] = [
+/**
-  {
+ * Segmentation editing toolbar buttons: the toolbox section containers plus
-    id: 'AdvancedRenderingControls',
+ * the labelmap / contour editing tools and utilities. These complement the
-    uiType: 'ohif.advancedRenderingControls',
+ * general buttons in `cornerstone.toolbarButtons`; together they are the
-    props: {
+ * default button set for the segmentation mode, and modes such as basic /
-      buttonSection: true,
+ * longitudinal can pull them in via a customization (see
-    },
+ * `segmentationEditing.jsonc`).
-  },
+ */
-  {
+const segmentationToolbarButtons: Button[] = [
-    id: 'modalityLoadBadge',
+  // section containers for the nested toolboxes and toolbars
-    uiType: 'ohif.modalityLoadBadge',
-    props: {
-      icon: 'Status',
-      label: i18n.t('Buttons:Status'),
-      tooltip: i18n.t('Buttons:Status'),
-      evaluate: {
-        name: 'evaluate.modalityLoadBadge',
-        hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'navigationComponent',
-    uiType: 'ohif.navigationComponent',
-    props: {
-      icon: 'Navigation',
-      label: i18n.t('Buttons:Navigation'),
-      tooltip: i18n.t('Buttons:Navigate between segments/measurements and manage their visibility'),
-      evaluate: {
-        name: 'evaluate.navigationComponent',
-        hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'trackingStatus',
-    uiType: 'ohif.trackingStatus',
-    props: {
-      icon: 'TrackingStatus',
-      label: i18n.t('Buttons:Tracking Status'),
-      tooltip: i18n.t('Buttons:View and manage tracking status of measurements and annotations'),
-      evaluate: {
-        name: 'evaluate.trackingStatus',
-        hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'dataOverlayMenu',
-    uiType: 'ohif.dataOverlayMenu',
-    props: {
-      icon: 'ViewportViews',
-      label: i18n.t('Buttons:Data Overlay'),
-      tooltip: i18n.t(
-        'Buttons:Configure data overlay options and manage foreground/background display sets'
-      ),
-      evaluate: 'evaluate.dataOverlayMenu',
-    },
-  },
-  {
-    id: 'orientationMenu',
-    uiType: 'ohif.orientationMenu',
-    props: {
-      icon: 'OrientationSwitch',
-      label: i18n.t('Buttons:Orientation'),
-      tooltip: i18n.t(
-        'Buttons:Change viewport orientation between axial, sagittal, coronal and reformat planes'
-      ),
-      evaluate: {
-        name: 'evaluate.orientationMenu',
-        // hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'windowLevelMenuEmbedded',
-    uiType: 'ohif.windowLevelMenuEmbedded',
-    props: {
-      icon: 'WindowLevel',
-      label: i18n.t('Buttons:Window Level'),
-      tooltip: i18n.t('Buttons:Adjust window/level presets and customize image contrast settings'),
-      evaluate: {
-        name: 'evaluate.windowLevelMenuEmbedded',
-        hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'windowLevelMenu',
-    uiType: 'ohif.windowLevelMenu',
-    props: {
-      icon: 'WindowLevel',
-      label: i18n.t('Buttons:Window Level'),
-      tooltip: i18n.t('Buttons:Adjust window/level presets and customize image contrast settings'),
-      evaluate: 'evaluate.windowLevelMenu',
-    },
-  },
-  {
-    id: 'voiManualControlMenu',
-    uiType: 'ohif.voiManualControlMenu',
-    props: {
-      icon: 'WindowLevelAdvanced',
-      label: i18n.t('Buttons:Advanced Window Level'),
-      tooltip: i18n.t('Buttons:Advanced window/level settings with manual controls and presets'),
-      evaluate: 'evaluate.voiManualControlMenu',
-    },
-  },
-  {
-    id: 'thresholdMenu',
-    uiType: 'ohif.thresholdMenu',
-    props: {
-      icon: 'Threshold',
-      label: i18n.t('Buttons:Threshold'),
-      tooltip: i18n.t('Buttons:Image threshold settings'),
-      evaluate: {
-        name: 'evaluate.thresholdMenu',
-        hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'opacityMenu',
-    uiType: 'ohif.opacityMenu',
-    props: {
-      icon: 'Opacity',
-      label: i18n.t('Buttons:Opacity'),
-      tooltip: i18n.t('Buttons:Image opacity settings'),
-      evaluate: {
-        name: 'evaluate.opacityMenu',
-        hideWhenDisabled: true,
-      },
-    },
-  },
-  {
-    id: 'Colorbar',
-    uiType: 'ohif.colorbar',
-    props: {
-      type: 'tool',
-      label: i18n.t('Buttons:Colorbar'),
-    },
-  },
-  // sections
-  {
-    id: 'MoreTools',
-    uiType: 'ohif.toolButtonList',
-    props: {
-      buttonSection: true,
-    },
-  },
   {
     id: 'BrushTools',
     uiType: 'ohif.toolBoxButtonGroup',
@@ -176,7 +40,6 @@ export const toolbarButtons: Button[] = [
       buttonSection: true,
     },
   },
-  // Section containers for the nested toolboxes and toolbars.
   {
     id: 'LabelMapUtilities',
     uiType: 'ohif.Toolbar',
@@ -206,215 +69,6 @@ export const toolbarButtons: Button[] = [
     },
   },
   // tool defs
-  {
-    id: 'Zoom',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-zoom',
-      label: i18n.t('Buttons:Zoom'),
-      commands: setToolActiveToolbar,
-      evaluate: 'evaluate.cornerstoneTool',
-    },
-  },
-  {
-    id: 'WindowLevel',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-window-level',
-      label: i18n.t('Buttons:Window Level'),
-      commands: setToolActiveToolbar,
-      evaluate: 'evaluate.cornerstoneTool',
-    },
-  },
-  {
-    id: 'Pan',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-move',
-      label: i18n.t('Buttons:Pan'),
-      commands: setToolActiveToolbar,
-      evaluate: 'evaluate.cornerstoneTool',
-    },
-  },
-  {
-    id: 'TrackballRotate',
-    uiType: 'ohif.toolButton',
-    props: {
-      type: 'tool',
-      icon: 'tool-3d-rotate',
-      label: i18n.t('Buttons:3D Rotate'),
-      commands: setToolActiveToolbar,
-      evaluate: {
-        name: 'evaluate.cornerstoneTool',
-        disabledText: i18n.t('Buttons:Select a 3D viewport to enable this tool'),
-      },
-    },
-  },
-  {
-    id: 'Capture',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-capture',
-      label: i18n.t('Buttons:Capture'),
-      commands: 'showDownloadViewportModal',
-      evaluate: [
-        'evaluate.action',
-        {
-          name: 'evaluate.viewport.supported',
-          unsupportedViewportTypes: ['video', 'wholeSlide'],
-        },
-      ],
-    },
-  },
-  {
-    id: 'Layout',
-    uiType: 'ohif.layoutSelector',
-    props: {
-      rows: 3,
-      columns: 4,
-      evaluate: 'evaluate.action',
-      commands: 'setViewportGridLayout',
-    },
-  },
-  {
-    id: 'Crosshairs',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-crosshair',
-      label: i18n.t('Buttons:Crosshairs'),
-      commands: {
-        commandName: 'setToolActiveToolbar',
-        commandOptions: {
-          toolGroupIds: ['mpr'],
-        },
-      },
-      evaluate: {
-        name: 'evaluate.cornerstoneTool',
-        disabledText: i18n.t('Buttons:Select an MPR viewport to enable this tool'),
-      },
-    },
-  },
-  {
-    id: 'Reset',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-reset',
-      label: i18n.t('Buttons:Reset View'),
-      tooltip: i18n.t('Buttons:Reset View'),
-      commands: 'resetViewport',
-      evaluate: 'evaluate.action',
-    },
-  },
-  {
-    id: 'rotate-right',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-rotate-right',
-      label: i18n.t('Buttons:Rotate Right'),
-      tooltip: i18n.t('Buttons:Rotate +90'),
-      commands: 'rotateViewportCW',
-      evaluate: 'evaluate.action',
-    },
-  },
-  {
-    id: 'flipHorizontal',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-flip-horizontal',
-      label: i18n.t('Buttons:Flip Horizontal'),
-      tooltip: i18n.t('Buttons:Flip Horizontally'),
-      commands: 'flipViewportHorizontal',
-      evaluate: [
-        'evaluate.viewportProperties.toggle',
-        {
-          name: 'evaluate.viewport.supported',
-          unsupportedViewportTypes: ['volume3d'],
-        },
-      ],
-    },
-  },
-  {
-    id: 'ReferenceLines',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-referenceLines',
-      label: i18n.t('Buttons:Reference Lines'),
-      tooltip: i18n.t('Buttons:Show Reference Lines'),
-      commands: 'toggleEnabledDisabledToolbar',
-      evaluate: 'evaluate.cornerstoneTool.toggle',
-    },
-  },
-  {
-    id: 'ImageOverlayViewer',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'toggle-dicom-overlay',
-      label: i18n.t('Buttons:Image Overlay'),
-      tooltip: i18n.t('Buttons:Toggle Image Overlay'),
-      commands: 'toggleEnabledDisabledToolbar',
-      evaluate: 'evaluate.cornerstoneTool.toggle',
-    },
-  },
-  {
-    id: 'StackScroll',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-stack-scroll',
-      label: i18n.t('Buttons:Stack Scroll'),
-      tooltip: i18n.t('Buttons:Stack Scroll'),
-      commands: setToolActiveToolbar,
-      evaluate: 'evaluate.cornerstoneTool',
-    },
-  },
-  {
-    id: 'invert',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-invert',
-      label: i18n.t('Buttons:Invert'),
-      tooltip: i18n.t('Buttons:Invert Colors'),
-      commands: 'invertViewport',
-      evaluate: 'evaluate.viewportProperties.toggle',
-    },
-  },
-  {
-    id: 'Cine',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-cine',
-      label: i18n.t('Buttons:Cine'),
-      tooltip: i18n.t('Buttons:Cine'),
-      commands: 'toggleCine',
-      evaluate: [
-        'evaluate.cine',
-        {
-          name: 'evaluate.viewport.supported',
-          unsupportedViewportTypes: ['volume3d'],
-        },
-      ],
-    },
-  },
-  {
-    id: 'Magnify',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'tool-magnify',
-      label: i18n.t('Buttons:Zoom-in'),
-      tooltip: i18n.t('Buttons:Zoom-in'),
-      commands: setToolActiveToolbar,
-      evaluate: 'evaluate.cornerstoneTool',
-    },
-  },
-  {
-    id: 'TagBrowser',
-    uiType: 'ohif.toolButton',
-    props: {
-      icon: 'dicom-tag-browser',
-      label: i18n.t('Buttons:Dicom Tag Browser'),
-      tooltip: i18n.t('Buttons:Dicom Tag Browser'),
-      commands: 'openDICOMTagViewer',
-    },
-  },
   {
     id: 'PlanarFreehandContourSegmentationTool',
     uiType: 'ohif.toolBoxButton',
@@ -559,7 +213,11 @@ export const toolbarButtons: Button[] = [
               value: 'CatmullRomSplineROI',
               label: i18n.t('Buttons:Catmull Rom Spline'),
             },
-            { id: 'LinearSplineROI', value: 'LinearSplineROI', label: i18n.t('Buttons:Linear Spline') },
+            {
+              id: 'LinearSplineROI',
+              value: 'LinearSplineROI',
+              label: i18n.t('Buttons:Linear Spline'),
+            },
             { id: 'BSplineROI', value: 'BSplineROI', label: i18n.t('Buttons:B-Spline') },
           ],
           commands: {
@@ -763,18 +421,23 @@ export const toolbarButtons: Button[] = [
     },
   },
   {
-    id: 'RegionSegmentPlus',
+    id: 'ClickSegment',
     uiType: 'ohif.toolBoxButton',
     props: {
       icon: 'icon-tool-click-segment',
-      label: i18n.t('Buttons:One Click Segment'),
+      label: i18n.t('Buttons:Click to Segment'),
       tooltip: i18n.t(
-        'Buttons:Detects segmentable regions with one click. Hover for visual feedback—click when a plus sign appears to auto-segment the lesion.'
+        'Buttons:PET only. Click-to-segment lesions with no configuration. Hover for visual feedback—click when a plus sign appears to segment the lesion.'
       ),
       evaluate: [
+        {
+          name: 'evaluate.modality.supported',
+          supportedModalities: ['PT'],
+          disabledText: i18n.t('Buttons:Tool not available for this modality'),
+        },
         {
           name: 'evaluate.cornerstone.segmentation',
-          toolNames: ['RegionSegmentPlus'],
+          toolNames: ['ClickSegment'],
           disabledText: i18n.t('Buttons:Create new segmentation to enable this tool.'),
         },
         {
@@ -1195,4 +858,106 @@ export const toolbarButtons: Button[] = [
   },
 ];
 
-export default toolbarButtons;
+/**
+ * The toolbox / utilities section wiring for segmentation editing. These are
+ * the sections rendered by the `panelSegmentationWithTools*` panels, so any
+ * mode that shows those panels can merge this block into its toolbar sections.
+ */
+export const segmentationToolboxSections: Record<string, string[]> = {
+  [TOOLBAR_SECTIONS.labelMapSegmentationToolbox]: ['LabelMapTools'],
+  [TOOLBAR_SECTIONS.contourSegmentationToolbox]: ['ContourTools'],
+  [TOOLBAR_SECTIONS.labelMapSegmentationUtilities]: ['LabelMapUtilities'],
+  [TOOLBAR_SECTIONS.contourSegmentationUtilities]: ['ContourUtilities'],
+
+  LabelMapTools: [
+    'LabelmapSlicePropagation',
+    'BrushTools',
+    'MarkerLabelmap',
+    'ClickSegment',
+    'Shapes',
+    'LabelMapEditWithContour',
+  ],
+  ContourTools: [
+    'PlanarFreehandContourSegmentationTool',
+    'SculptorTool',
+    'SplineContourSegmentationTool',
+    'LivewireContourSegmentationTool',
+  ],
+
+  LabelMapUtilities: ['InterpolateLabelmap', 'SegmentBidirectional'],
+  ContourUtilities: ['LogicalContourOperations', 'SimplifyContours', 'SmoothContours'],
+
+  BrushTools: ['Brush', 'Eraser', 'Threshold'],
+};
+
+/**
+ * The segmentation mode's main toolbar layout (primary bar and viewport
+ * action corners). Kept separate from the toolbox wiring above so other modes
+ * can adopt segmentation editing without adopting this mode layout.
+ */
+export const segmentationModeToolbarSections: Record<string, string[]> = {
+  [TOOLBAR_SECTIONS.primary]: [
+    'WindowLevel',
+    'Pan',
+    'Zoom',
+    'TrackballRotate',
+    'Capture',
+    'Layout',
+    'Crosshairs',
+    'MoreTools',
+  ],
+
+  [TOOLBAR_SECTIONS.viewportActionMenu.topLeft]: ['orientationMenu', 'dataOverlayMenu'],
+
+  [TOOLBAR_SECTIONS.viewportActionMenu.bottomMiddle]: ['AdvancedRenderingControls'],
+
+  AdvancedRenderingControls: [
+    'windowLevelMenuEmbedded',
+    'voiManualControlMenu',
+    'Colorbar',
+    'opacityMenu',
+    'thresholdMenu',
+  ],
+
+  [TOOLBAR_SECTIONS.viewportActionMenu.topRight]: [
+    'modalityLoadBadge',
+    'trackingStatus',
+    'navigationComponent',
+  ],
+
+  [TOOLBAR_SECTIONS.viewportActionMenu.bottomLeft]: ['windowLevelMenu'],
+
+  MoreTools: [
+    'Reset',
+    'rotate-right',
+    'flipHorizontal',
+    'ReferenceLines',
+    'ImageOverlayViewer',
+    'StackScroll',
+    'invert',
+    'Cine',
+    'Magnify',
+    'TagBrowser',
+  ],
+};
+
+/**
+ * Segmentation capability packs registered (at default scope) by the
+ * cornerstone extension. These are pure "what can exist" packs and carry no
+ * mode identity:
+ *   - `cornerstone.segmentationToolbarButtons`  – segmentation editing button definitions
+ *   - `cornerstone.segmentationToolbarSections` – toolbox/utilities section wiring
+ *   - `cornerstone.segmentationModeToolbarSections` – a reusable segmentation-mode toolbar layout
+ *
+ * Modes compose these by name in their own `toolbarButtons` /
+ * `toolbarSections` instance arrays; `?customization=` modules extend the
+ * result through the `mode` phase.
+ */
+const segmentationToolbarCustomization = {
+  'cornerstone.segmentationToolbarButtons': segmentationToolbarButtons,
+  'cornerstone.segmentationToolbarSections': segmentationToolboxSections,
+  'cornerstone.segmentationModeToolbarSections': segmentationModeToolbarSections,
+};
+
+export { segmentationToolbarButtons };
+export default segmentationToolbarCustomization;

extensions/cornerstone/src/customizations/toolGroupToolsCustomization.ts

@@ -0,0 +1,204 @@
+import { toolNames } from '../initCornerstoneTools';
+import {
+  MIN_SEGMENTATION_DRAWING_RADIUS,
+  MAX_SEGMENTATION_DRAWING_RADIUS,
+} from './segmentationToolbarCustomization';
+
+/**
+ * Reusable tool group "capability blocks", registered as default
+ * customizations so modes and `?customization=` JSON modules can add them to
+ * a tool group by name via a mode's `toolGroupAdditions` customization, e.g.
+ *
+ *   "mode": {
+ *     "basic": {
+ *       "toolGroupAdditions": {
+ *         "default": { "$push": [{ "$reference": "cornerstone.segmentationTools" }] }
+ *       }
+ *     }
+ *   }
+ *
+ * Each block is a `{ active/passive/enabled/disabled }` object suitable for
+ * `toolGroupService.addToolsToToolGroup`.
+ */
+function getToolGroupToolsCustomization({ commandsManager }) {
+  const brushInstances = [
+    {
+      toolName: 'CircularBrush',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'FILL_INSIDE_CIRCLE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+      },
+    },
+    {
+      toolName: 'CircularEraser',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'ERASE_INSIDE_CIRCLE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+      },
+    },
+    {
+      toolName: 'SphereBrush',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'FILL_INSIDE_SPHERE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+      },
+    },
+    {
+      toolName: 'SphereEraser',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'ERASE_INSIDE_SPHERE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+      },
+    },
+    {
+      toolName: 'ThresholdCircularBrush',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'THRESHOLD_INSIDE_CIRCLE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+      },
+    },
+    {
+      toolName: 'ThresholdSphereBrush',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'THRESHOLD_INSIDE_SPHERE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+      },
+    },
+    {
+      toolName: 'ThresholdCircularBrushDynamic',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'THRESHOLD_INSIDE_CIRCLE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+        threshold: {
+          isDynamic: true,
+          dynamicRadius: 3,
+        },
+      },
+    },
+    {
+      toolName: 'ThresholdSphereBrushDynamic',
+      parentTool: 'Brush',
+      configuration: {
+        activeStrategy: 'THRESHOLD_INSIDE_SPHERE',
+        minRadius: MIN_SEGMENTATION_DRAWING_RADIUS,
+        maxRadius: MAX_SEGMENTATION_DRAWING_RADIUS,
+        threshold: {
+          isDynamic: true,
+          dynamicRadius: 3,
+        },
+      },
+    },
+  ];
+
+  const splineInstances = [
+    {
+      toolName: 'CatmullRomSplineROI',
+      parentTool: toolNames.SplineContourSegmentation,
+      configuration: {
+        spline: {
+          type: 'CATMULLROM',
+          enableTwoPointPreview: true,
+        },
+      },
+    },
+    {
+      toolName: 'LinearSplineROI',
+      parentTool: toolNames.SplineContourSegmentation,
+      configuration: {
+        spline: {
+          type: 'LINEAR',
+          enableTwoPointPreview: true,
+        },
+      },
+    },
+    {
+      toolName: 'BSplineROI',
+      parentTool: toolNames.SplineContourSegmentation,
+      configuration: {
+        spline: {
+          type: 'BSPLINE',
+          enableTwoPointPreview: true,
+        },
+      },
+    },
+  ];
+
+  return {
+    /**
+     * The segmentation editing tools (labelmap brushes/scissors and contour
+     * segmentation tools), matching the buttons in
+     * `cornerstone.segmentationToolbarButtons`.
+     */
+    'cornerstone.segmentationTools': {
+      passive: [
+        ...brushInstances,
+        { toolName: toolNames.LabelmapSlicePropagation },
+        { toolName: toolNames.MarkerLabelmap },
+        { toolName: toolNames.ClickSegment },
+        { toolName: toolNames.LabelMapEditWithContourTool },
+        { toolName: toolNames.SegmentSelect },
+        { toolName: toolNames.CircleScissors },
+        { toolName: toolNames.RectangleScissors },
+        { toolName: toolNames.SphereScissors },
+        { toolName: toolNames.LivewireContourSegmentation },
+        { toolName: toolNames.SculptorTool },
+        ...splineInstances,
+      ],
+    },
+
+    /**
+     * The measurement/annotation tools, matching the `MeasurementTools`
+     * buttons in `cornerstone.toolbarButtons`. Useful for adding annotations
+     * to modes (such as segmentation) whose tool groups omit them.
+     */
+    'cornerstone.annotationTools': {
+      passive: [
+        { toolName: toolNames.Length },
+        {
+          toolName: toolNames.ArrowAnnotate,
+          configuration: {
+            getTextCallback: (callback, eventDetails) => {
+              commandsManager.runCommand('arrowTextCallback', {
+                callback,
+                eventDetails,
+              });
+            },
+            changeTextCallback: (data, eventDetails, callback) => {
+              commandsManager.runCommand('arrowTextCallback', {
+                callback,
+                data,
+                eventDetails,
+              });
+            },
+          },
+        },
+        { toolName: toolNames.Bidirectional },
+        { toolName: toolNames.Probe },
+        { toolName: toolNames.DragProbe },
+        { toolName: toolNames.EllipticalROI },
+        { toolName: toolNames.CircleROI },
+        { toolName: toolNames.RectangleROI },
+        { toolName: toolNames.Angle },
+        { toolName: toolNames.CobbAngle },
+        { toolName: toolNames.SplineROI },
+        { toolName: toolNames.LivewireContour },
+      ],
+    },
+  };
+}
+
+export default getToolGroupToolsCustomization;