* chore(tests): Update multiple screenshot test images for various specs
* feat(screenshot-reviewer): Add screenshot review tool and update package.json scripts
* fix(DICOMSRDisplayTool): Improve actor presence check in viewport
* chore(tests): Update multiple screenshot assets for various specs
* chore(tests): Integrate waitForPaintToSettle and waitForViewportsRendered in multiple specs for improved rendering stability
* chore(tests): Update screenshot assets for SEGHydration and SEGNoHydration specs
* test: update progressive loading screenshots
* jest 30 test fixes for compatibility with pnpm cs3d
* Use correct setDisplaySets instead of setDataId
* fix: Naming change for LegacyVolumeViewport3D
* Update to allow tolerance for contour tests
* update
* fix
* refactor: Replace instanceof checks with utility functions for viewport type validation
* fix: Update createSegmentationForViewport to handle undefined displaySetInstanceUID gracefully
* bun lock
* fix: Install cs3d with pnpm instead of bun
* Update node version for playwright
* Update to v5.0.0 of cs3d
* fix: Build dependency
* audit
* Change to a web await retry assert
* Fix timing related test failures
* fix: Freehand close
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* Update to use beta 5.0
* fix: unit tests
* fix: Allow slow server/test rendering to still work
* Update tests to use viewport grid compare
* Fix storage of stale retries actual/diff files
* cs3d linking fixees
* Linking for cs3d metadata
* Use metadata import for suv scaling
* Fix suv import
* Use type for import
* fix: Metadata registration ordering
* Use beta for upstream
* Merge from origin/master
* Revert tests to master
* Undo beta version changes
* Revert bun.lock file to that of master.
* Reduce test failure retries to one per test. Cap the number of failed total tests to 10. Replace the JSON reporter with the HTML reporter.
* Add generic provider back in
* Deprecate OHIF versions of cs3d utils
* fix
* Undo some cs3d beta dependencies so this PR could be merged
* Build fix
* Fixing build issues
* build issue
* bun lock
* Temporary cache clear to resolve build issue
* Cache bust
* Remove the babel hoist fix attempt
* Cache netlify toml issue
* Fix netlify cache issue
* Try to fix cache dependency issue
* Try update resolutions
* babel hoist fix
* fix: Remove netlify cache bust
* Revert pinned versions
* PR comments on duplicated suv-factors
* Undo lock changes and isEqual add
---------
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* fix: Use newer ONNX version and load without errors
* Only changes to enable SAM again
* fix(seg hydration): auto-hydrate RT struct on second load with disableConfirmationPrompts (#5875)
* chore(version): Update package versions to 3.13.0-beta.34 [skip ci]
* fix(Threshold tool): Threshold tool no longer becomes deselected when the Dynamic option is selected (#5884)
fix(Threshold tool): Added 'ThresholdCircularBrushDynamic' to the toolNames array so the evaluator correctly recognizes it as an active state for the Threshold button when Dynamic mode is selected.
* chore(version): Update package versions to 3.13.0-beta.35 [skip ci]
* fix: Modalities in study list should select starts with as primary (#5886)
* chore(version): Update package versions to 3.13.0-beta.36 [skip ci]
* fix(security): Bump tar version to address CVE-2026-31802. (#5893)
* chore(version): Update package versions to 3.13.0-beta.37 [skip ci]
* fix(segmentation): Display "No description S:{series number} {modality}" for segmentations with no label. (#5874)
* Bump CS3D dependency to get the fallbackLabel field additions.
* chore(version): Update package versions to 3.13.0-beta.38 [skip ci]
* fix(window level): The window level value is not displayed by default on all the viewports when selecting common/custom layout and TMTV. (#5865)
* fix(window level): Set up listener for viewport availability such that the initial window level can be read and displayed.
* PR feedback.
* PR feedback.
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* chore(version): Update package versions to 3.13.0-beta.39 [skip ci]
* fix(security): Bump flattened version to address CVE-2026-32141. (#5897)
* chore(version): Update package versions to 3.13.0-beta.40 [skip ci]
* fix(sr-hydration): enable hydration and arrow navigation for 3D SR measurements (#5887)
Joe is away, so approving based on the code having the requested change, and otherwise looking good/passing tests.
* fix(sr-hydration): enable hydration and arrows navigation for 3D SR measurements
* test: add automated test for SR measurement navigation with arrows after hydration
* add cross-study warning in the 3D branch
* test: address reviewer feedback for the test
* fix: support 3D and 2D annotations for SR hydration
* test: improve navigation to first image
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* chore(version): Update package versions to 3.13.0-beta.41 [skip ci]
* feat: Add combined build (#5895)
* Add combined build
* Link script location update
* Security and validation fixes
* Allow specifying target path in PR description
* fix: Version match
* Fix build detection issue
* fix: Playwright deploy
* Separate out the branch merge guard
* Update docs and link info
* test: Update the layout change to wait for network idle
* Move audit late so the rest of the build can be worked on
* Add text with network check to ensure we see this change is updated
* Attempt to fix the mpr loading on ohif-downstream
* PR review comments
* Update docs
* Update to CS3D 4.20.0
* PR comments
* Add log on ohif-integration builds
* Update build test
* Removed unused space to kickoff build
* chore(version): Update package versions to 3.13.0-beta.42 [skip ci]
* fix(SR): Added support for spline and live wire SR items. (#5870)
* fix(SR): Added support for spline and live wire SR items.
* Apply suggestion from @greptile-apps[bot]
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
* Add a script to checkout a worktree for test builds
* fix: Allow download for testing sr validator
* Remove script that wasn't intended to be included
* Bump CS3D version.
* PR comments - simplify code and use single codepath for download
* Allow both download and save buttons for SEG and RTSTRUCT
---------
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* chore(version): Update package versions to 3.13.0-beta.43 [skip ci]
* chore(tests): contour segment interactions e2e tests - rename and togglevisibility (#5891)
* chore(version): Update package versions to 3.13.0-beta.44 [skip ci]
* chore(refactor): use public appConfig getter instead of private _appConfig field (#5923)
* chore(version): Update package versions to 3.13.0-beta.45 [skip ci]
* refactor(tests): update viewport page object usage to async and update all effected tests (#5927)
* chore(version): Update package versions to 3.13.0-beta.46 [skip ci]
* fix: prevent black viewport when navigating series with client-created segmentation (#5919)
* chore(version): Update package versions to 3.13.0-beta.47 [skip ci]
* fix(measurement): Restore viewport interactivity when deleting in-progress Spline or Livewire measurement (#5905)
* chore(version): Update package versions to 3.13.0-beta.48 [skip ci]
* fix(segmentation): restrict overlay segmentation menu to same frame of reference as viewport background display set (#5900)
- Add FrameOfReferenceUID to SEG and RTSTRUCT displaySet in SOP Class Handlers so the FOR is available for filtering
- Sync optimisticOverlayDisplaySets when background display set changes so the overlay menu reflects the correct state after a background switch
- Add FOR matching guard to the hydrate segmentation synchronizer to prevent the hydration synchronizer from blindly mirroring segmentations from a source viewport to a target viewport if their primary Frames of Reference do not align.
- fix segmentation overlay order reversal on viewport re-render
* chore(version): Update package versions to 3.13.0-beta.49 [skip ci]
* fix(security): update dependencies to fix security vulnerabilities (#5936)
* chore(version): Update package versions to 3.13.0-beta.50 [skip ci]
* fix(security): Update yarn.lock that was missed in PR #5936. (#5940)
* chore(version): Update package versions to 3.13.0-beta.51 [skip ci]
* feat(component): Adds SmartScrollbar to ui-next - OHIF-2558 (#5924)
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
* fix(defaultRouteInit): pass sorted display sets to hanging protocol for deterministic viewport order (#5933)
fix: pass sorted display sets to hanging protocol for deterministic viewport order
The `applyHangingProtocol` function already sorts display sets by modality
priority and series number into `sortedDisplaySets`, but the unsorted
`displaySets` array was being passed to `hangingProtocolService.run()`.
This caused non-deterministic viewport ordering across page loads because
`displaySetService.getActiveDisplaySets()` returns display sets in creation
order, which depends on asynchronous network responses.
Made-with: Cursor
* chore(version): Update package versions to 3.13.0-beta.52 [skip ci]
* revert: rename DisplaySet.frameOfReferenceUID back to FrameOfReferenceUID (#5943)
* chore(version): Update package versions to 3.13.0-beta.53 [skip ci]
* fix(cornerstone): read FrameOfReferenceUID from display set in viewport service (#5950)
* chore(version): Update package versions to 3.13.0-beta.54 [skip ci]
* fix: ignore auth in git (#5955)
* chore(version): Update package versions to 3.13.0-beta.55 [skip ci]
* ONNX latest version
* chore(version): Update package versions to 3.13.0-beta.56 [skip ci]
* bun lock
* fix high sev mathjs issue
* Revert onnx changes
* Update to recent CS3D version
* Undo unneeded change
* Add null check
* Undo unneeded change
---------
Co-authored-by: Ghadeer Albattarni <165973963+GhadeerAlbattarni@users.noreply.github.com>
Co-authored-by: ohif-bot <danny.ri.brown+ohif-bot@gmail.com>
Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: diattamo <mmddiatta@gmail.com>
Co-authored-by: Pedro Köhler <pedrokohlerbh@gmail.com>
Co-authored-by: Dan Rukas <dan.rukas@gmail.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>
- Add FrameOfReferenceUID to SEG and RTSTRUCT displaySet in SOP Class Handlers so the FOR is available for filtering
- Sync optimisticOverlayDisplaySets when background display set changes so the overlay menu reflects the correct state after a background switch
- Add FOR matching guard to the hydrate segmentation synchronizer to prevent the hydration synchronizer from blindly mirroring segmentations from a source viewport to a target viewport if their primary Frames of Reference do not align.
- fix segmentation overlay order reversal on viewport re-render
* fix(SR): Added support for spline and live wire SR items.
* Apply suggestion from @greptile-apps[bot]
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
* Add a script to checkout a worktree for test builds
* fix: Allow download for testing sr validator
* Remove script that wasn't intended to be included
* Bump CS3D version.
* PR comments - simplify code and use single codepath for download
* Allow both download and save buttons for SEG and RTSTRUCT
---------
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix(window level): Set up listener for viewport availability such that the initial window level can be read and displayed.
* PR feedback.
* PR feedback.
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* feat(ecg): add DICOM ECG waveform extension
Introduce @ohif/extension-dicom-ecg for rendering DICOM waveform (ECG)
data. Register the extension in the basic mode and pluginConfig.json,
and remove ECG from NON_IMAGE_MODALITIES so waveform display sets are
handled by the new viewport.
* refactor(ecg): move ECG support into cornerstone extension per review feedback
- Remove standalone dicom-ecg extension; fold all ECG functionality into
the cornerstone extension as requested by reviewer
- Add ECG SOP class handler (DicomEcgSopClassHandler) to the cornerstone
extension getSopClassHandlerModule, registering ECG waveform metadata
via genericMetadataProvider on display set creation
- Move ECG helpers (buildEcgModule, decodeInt16Multiplex, base64ToArrayBuffer)
into extensions/cornerstone/src/utils/ecgMetadata.ts
- Handle ECGViewport in CornerstoneViewportService._setDisplaySets by
detecting ECGViewport instanceof and calling setEcg(imageId) directly,
so OHIFCornerstoneViewport can be used without a custom ECG viewport component
- Add ECG support to getCornerstoneViewportType utility
- Update basic mode to reference the cornerstone extension's ECG SOP handler
and use the base cornerstone viewport for ECG display sets
- Migrate ecgMetadata and getCornerstoneViewportType tests
* chore: revert bun.lock to upstream origin/master
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix capture not maintaining flip/rotate state
* fix capture not maintaining flip/rotate state
---------
Co-authored-by: silasshellenbarger <sdshe@Silas-Computer.localdomain>
- add segmentationExists check to getSopClassHandlerModule
- now firing SEGMENTATION_REMOVED and SEGMENTATION_REPRESENTATION_REMOVED events
- centralized segmentation removal in a listener
- when a segmentation is deleted (completely), remove it from all viewports it overlays
- when a segmentation is removed from a viewport, remove it as overlay from the viewport
---------
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* Better handle octet stream case
* Use data source config stack options
* Use immutability helper
* Use immutability helper (update)
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
Will address a few more comments in a separate PR released after this one into 3.13
* fix(HistoryMemo): Segmentation delete wasn't remembered
* Temporary add of package.json linking
* fix: Use newer dcmjs version and delete segmentation with history cs3d
The window level menu's logic for when it is opened and closed now also runs when the AllInOneMenu triggers the open or close.
Using refs to store the latest function references in the AllInOneMenu component to avoid triggering a useEffect when the functions change.
Removed an unused element prop from the WindowLevelActionMenu component.
This was done by using an array of representation types instead of a single type for a panel.
The first element of the array is the primary type of the panel, and the rest are secondary types
that can also be displayed in the panel.
PR feedback:
- added test to check number of segments in side panel for 3D only view
- fixed jumping to segment in 3D only view
- fixed exception when adding contour segment in 3D only view
* fix: prevent annotation from appearing in active viewport when switching series with different Frame of Reference UID
* refactor: extract viewport update strategies
* Update version and use nearest orientation viewport
---------
Co-authored-by: trenser-belbin <belbin.kunjumon@prenuvo.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
Requested issues were resolved. Approved this and am merging.
* sort the viewports based on the closest orientation as that of measurement
* fix: Separate out function for finding viewport alignment
---------
Co-authored-by: Arul Mozhi J <arul.mozhi@trenser.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix(ViewportWindowLevel): add null checks for volumeActor in opacity functions
* refactor(ViewportWindowLevel): register histogram worker at module load and optimize scalar data retrieval
* fix(Preclinical4D): add null check for viewportId and set frame rate for cine playback
* fix: seg sync for data without FOR
* test commit to trigger deploy re-run
* test commit to trigger deploy re-run
* Revert "test commit to trigger deploy re-run"
This reverts commit 42c532c6f404798e39e3d137fff7c1e7569956ad.
* chore: comments updated
* review commnets
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* [WIP] Fix contour annotations RTSS saving
* fix: Export image sop image reference provider
* Fixes for download with filename
* Updates to fix metadata issues with CS3D
* Updates to save menu
* Fixing some additional re-save metadata
* Add support for saving with predecessor image sequence
* PR comment fixes
* fix: Load RTSS after save
* fix segmentation save
* fix load of mixed seg/rt studies
* Use frame module to get information on the frame shown
* Fix study browser to use instances.length when numImageFrames not present
* fix: Load of display set split from multiple non-FOR referenes
* Fix RT and SEG applying to wrong series because of using
referenced series sequence without checkout sop instances
* Fix save seg
* Update to released CS3D versions
* test: Add revokeObjectURL to test download blob
* Add hard dependency on mode-basic to fix build order issues
* fix: build
* Try to fix build segmentation
* PR comments
* PR comment update
