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dabc948f4c | ||
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|
764b7a1054 | ||
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2f13453bea | ||
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|
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|
|
08ff214ea6 |
No files matched your search
@@ -1,19 +0,0 @@
|
||||
{
|
||||
"presets": [
|
||||
[
|
||||
"@babel/preset-env",
|
||||
{
|
||||
"targets": {
|
||||
"ie": "11"
|
||||
}
|
||||
}
|
||||
],
|
||||
"@babel/preset-react"
|
||||
],
|
||||
"plugins": [
|
||||
"@babel/plugin-proposal-class-properties",
|
||||
"@babel/plugin-syntax-dynamic-import",
|
||||
"@babel/plugin-transform-regenerator",
|
||||
"@babel/plugin-transform-runtime"
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,6 @@
|
||||
# Browsers that we support
|
||||
|
||||
> 1%
|
||||
IE 11
|
||||
not dead
|
||||
not op_mini all
|
||||
@@ -0,0 +1,69 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Set directory to location of this script
|
||||
# https://stackoverflow.com/a/3355423/1867984
|
||||
cd "$(dirname "$0")"
|
||||
|
||||
yarn -v
|
||||
node -v
|
||||
|
||||
echo 'Installing Gitbook CLI'
|
||||
|
||||
yarn global bin
|
||||
yarn config get prefix
|
||||
yarn config set prefix ~/.yarn
|
||||
export PATH="$PATH:`yarn global bin`"
|
||||
|
||||
echo 'Running Gitbook installation'
|
||||
|
||||
# Generate all version's GitBook output
|
||||
# For each directory in /docs ...
|
||||
cd ./../docs/
|
||||
for D in *; do
|
||||
if [ -d "${D}" ]; then
|
||||
|
||||
echo "Generating output for: ${D}"
|
||||
cd "${D}"
|
||||
|
||||
# Clear previous output, generate new
|
||||
rm -rf _book
|
||||
gitbook install
|
||||
gitbook build
|
||||
|
||||
cd ..
|
||||
|
||||
fi
|
||||
done
|
||||
|
||||
# Move CNAME File into `latest`
|
||||
cp CNAME ./latest/_book/CNAME
|
||||
|
||||
# Create a history folder in our latest version's output
|
||||
mkdir ./latest/_book/history
|
||||
|
||||
# Move each version's files to latest's history folder
|
||||
for D in *; do
|
||||
if [ -d "${D}" ]; then
|
||||
if [ "${D}" == v* ] ; then
|
||||
|
||||
echo "Moving ${D} to the latest version's history folder"
|
||||
|
||||
mkdir "./latest/_book/history/${D}"
|
||||
cp -v -r "./${D}/_book"/* "./latest/_book/history/${D}"
|
||||
|
||||
fi
|
||||
fi
|
||||
done
|
||||
|
||||
# Back to repo root
|
||||
cd ..
|
||||
|
||||
echo "Done generating documentation output"
|
||||
echo 'STARTING PUBLISH'
|
||||
|
||||
# WILL ALWAYS FAIL IF INITIATED FROM PR BRANCH
|
||||
npx gh-pages \
|
||||
--silent \
|
||||
--repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
|
||||
--message 'Autogenerated Message: [ci skip]' \
|
||||
--dist docs/latest/_book
|
||||
@@ -1,4 +1,4 @@
|
||||
version: 2
|
||||
version: 2.1
|
||||
|
||||
### ABOUT
|
||||
#
|
||||
@@ -9,24 +9,46 @@ version: 2
|
||||
# create pull request previews and to update `https://docs.ohif.org`
|
||||
###
|
||||
|
||||
## https://github.com/cypress-io/circleci-orb
|
||||
##
|
||||
orbs:
|
||||
codecov: codecov/codecov@1.0.5
|
||||
cypress: cypress-io/cypress@1.11.0
|
||||
executors:
|
||||
# Custom executor to override Cypress config
|
||||
deploy-to-prod-executor:
|
||||
docker:
|
||||
- image: 'cypress/browsers:node10.16.0-chrome77'
|
||||
environment:
|
||||
CYPRESS_BASE_URL: https://ohif-staging.netlify.com/
|
||||
|
||||
defaults: &defaults
|
||||
working_directory: ~/repo
|
||||
docker:
|
||||
- image: circleci/node:10.15.1
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm # Enable colors in term
|
||||
QUICK_BUILD: true
|
||||
working_directory: ~/repo
|
||||
|
||||
jobs:
|
||||
build_and_test:
|
||||
###
|
||||
# Workflow: PR_CHECKS
|
||||
###
|
||||
UNIT_TESTS:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Download and cache dependencies
|
||||
- checkout
|
||||
# Update yarn
|
||||
- run: yarn -v
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-v1-{{ .Branch }}-
|
||||
- yarn-packages-v1-
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -34,108 +56,249 @@ jobs:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
|
||||
# Build & Test
|
||||
- run: yarn build:package:ci
|
||||
# https://www.viget.com/articles/using-junit-on-circleci-2-0-with-jest-and-eslint/
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# RUN TESTS
|
||||
- run:
|
||||
name: 'JavaScript Test Suite'
|
||||
command: yarn test:unit:ci
|
||||
environment:
|
||||
JEST_JUNIT_OUTPUT: 'reports/junit/js-test-results.xml'
|
||||
# Store result
|
||||
- store_test_results:
|
||||
path: reports/junit
|
||||
- store_artifacts:
|
||||
path: reports/junit
|
||||
# Persist :+1:
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths: .
|
||||
command: yarn run test:unit:ci
|
||||
# PLATFORM/VIEWER
|
||||
- run:
|
||||
name: 'VIEWER: Combine report output'
|
||||
command: |
|
||||
viewerCov="/home/circleci/repo/platform/viewer/coverage"
|
||||
touch "${viewerCov}/reports"
|
||||
cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
|
||||
cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
|
||||
- codecov/upload:
|
||||
file: '/home/circleci/repo/platform/viewer/coverage/reports'
|
||||
flags: 'viewer'
|
||||
# PLATFORM/CORE
|
||||
- run:
|
||||
name: 'CORE: Combine report output'
|
||||
command: |
|
||||
coreCov="/home/circleci/repo/platform/core/coverage"
|
||||
touch "${coreCov}/reports"
|
||||
cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
|
||||
cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
|
||||
- codecov/upload:
|
||||
file: '/home/circleci/repo/platform/core/coverage/reports'
|
||||
flags: 'core'
|
||||
|
||||
e2e_test:
|
||||
working_directory: ~/repo
|
||||
docker:
|
||||
- image: cypress/base:8
|
||||
environment:
|
||||
## this enables colors in the output
|
||||
TERM: xterm
|
||||
###
|
||||
# Workflow: PR_OPTIONAL_DOCKER_PUBLISH
|
||||
###
|
||||
DOCKER_PR_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Enable yarn workspaces
|
||||
- run: yarn config set workspaces-experimental true
|
||||
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-v1-{{ .Branch }}-
|
||||
- yarn-packages-v1-
|
||||
# - run: $(yarn bin)/cypress run --record
|
||||
# Shouldn't be needed if we're using a package cache that contains Cypress
|
||||
# Could do a check here, if it doesn't exist, install cypress?
|
||||
- run: yarn install
|
||||
- run: yarn run test:e2e:ci
|
||||
- run: yarn run test:e2e:scriptTag
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
|
||||
npm_publish:
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
|
||||
- run:
|
||||
name: Build and push Docker image
|
||||
command: |
|
||||
# Remove npm config
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
echo $CIRCLE_BUILD_NUM
|
||||
# Build our image, auth, and push
|
||||
docker build --tag ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM
|
||||
|
||||
###
|
||||
# Workflow: DEPLOY
|
||||
###
|
||||
BUILD:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# Build & Test
|
||||
- run:
|
||||
name: 'Build the OHIF Viewer'
|
||||
command: yarn run build
|
||||
no_output_timeout: 45m
|
||||
# - run:
|
||||
# name: 'Upload SourceMaps, Send Deploy Notification'
|
||||
# command: |
|
||||
# # export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
|
||||
# # export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
|
||||
# # export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
|
||||
# # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
|
||||
# # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
|
||||
# # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
|
||||
# curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
|
||||
# Persist :+1:
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
- platform/viewer/dist
|
||||
- netlify.toml
|
||||
- .netlify
|
||||
|
||||
DEPLOY_TO_DEV:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: 32708787-c9b0-4634-b50f-7ca41952da77
|
||||
working_directory: ~/repo
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- run: cd .netlify && npm install
|
||||
- run:
|
||||
cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
|
||||
- run: cd .netlify && npm run deploy
|
||||
|
||||
DEPLOY_TO_STAGING:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: c7502ae3-b150-493c-8422-05701e44a969
|
||||
working_directory: ~/repo
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- run: cd .netlify && npm install
|
||||
- run:
|
||||
cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
|
||||
- run: cd .netlify && npm run deploy
|
||||
|
||||
DEPLOY_TO_PRODUCTION:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: 79c4a5da-5c95-4dc9-84f7-45fd9dfe21b0
|
||||
working_directory: ~/repo
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- run: cd .netlify && npm install
|
||||
- run:
|
||||
cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
|
||||
- run: cd .netlify && npm run deploy
|
||||
|
||||
###
|
||||
# Workflow: RELEASE
|
||||
###
|
||||
NPM_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- run: yarn -v
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command:
|
||||
mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
|
||||
no\n" > ~/.ssh/config
|
||||
# --no-ci argument is not ideal; however, semantic-rlease thinks we're
|
||||
# attempting to run it from a `pr`, which is not the case
|
||||
command: |
|
||||
rm -rf ~/.ssh
|
||||
mkdir ~/.ssh/
|
||||
echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
|
||||
git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
git config --global user.name "ohif-bot"
|
||||
- run:
|
||||
name: Publish using Semantic Release
|
||||
command: npx semantic-release --debug
|
||||
# Persist :+1:
|
||||
name: Authenticate with NPM registry
|
||||
command:
|
||||
echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run: npx lerna version
|
||||
- run: npx lerna publish from-package
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths: .
|
||||
|
||||
docs_publish:
|
||||
DOCS_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- checkout
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command:
|
||||
mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
|
||||
no\n" > ~/.ssh/config
|
||||
- run: git config --global user.email "gh-pages@localhost"
|
||||
- run: git config --global user.name "npm gh-pages"
|
||||
- run: yarn global add gh-pages
|
||||
- run:
|
||||
name: Generate Docs
|
||||
command: yarn run staticDeploy
|
||||
- run:
|
||||
name: Publish Docs
|
||||
command: yarn run docs:publish
|
||||
command: |
|
||||
rm -rf ~/.ssh
|
||||
mkdir ~/.ssh/
|
||||
echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
|
||||
git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
git config --global user.name "ohif-bot"
|
||||
- run: yarn global add gitbook-cli gh-pages
|
||||
- run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
|
||||
- run: ~/repo/.circleci/build-and-publish-docs.sh
|
||||
|
||||
docker_publish:
|
||||
DOCKER_MASTER_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: true
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build and push Docker image
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our `semantic-release` command in the previous job
|
||||
if [[ ! -e tmp/updated-version.txt ]]; then
|
||||
# our command in the previous job. Created in npm postpublish hook
|
||||
# in the `platform/viewer` project.
|
||||
if [[ ! -e platform/viewer/success_version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
# Remove npm config
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat tmp/updated-version.txt)
|
||||
export IMAGE_VERSION=$(cat platform/viewer/success_version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION.${CIRCLE_BUILD_NUM}
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
@@ -146,112 +309,135 @@ jobs:
|
||||
docker push ohif/$IMAGE_NAME:latest
|
||||
fi
|
||||
|
||||
build_demo_site:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Download and cache dependencies
|
||||
- checkout
|
||||
- restore_cache:
|
||||
name: Restore Yarn Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-v1-{{ .Branch }}-
|
||||
- yarn-packages-v1-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
|
||||
# Build & Test
|
||||
- run:
|
||||
name: 'Build Demo Site, Upload SourceMaps, Send Deploy Notification'
|
||||
command: |
|
||||
yarn build:demo:ci
|
||||
perl -i -pe 's#</head>#`cat .circleci/rollbar.html` #e' build/index.html
|
||||
export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
|
||||
export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
|
||||
export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
|
||||
curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
|
||||
curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
|
||||
curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
|
||||
curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
|
||||
# Persist :+1:
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths: .
|
||||
|
||||
demo_site_publish:
|
||||
working_directory: ~/repo
|
||||
docker:
|
||||
- image: google/cloud-sdk
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: true
|
||||
- run:
|
||||
name: Deploy latest version to viewer.ohif.org
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our `semantic-release` command in the previous job
|
||||
#if [[ ! -e tmp/updated-version.txt ]]; then
|
||||
# exit 0
|
||||
#else
|
||||
echo $GCLOUD_SERVICE_KEY | gcloud auth activate-service-account --key-file=-
|
||||
gcloud --quiet config set project ${GOOGLE_PROJECT_ID}
|
||||
gcloud --quiet config set compute/zone ${GOOGLE_COMPUTE_ZONE}
|
||||
|
||||
gsutil -m rm gs://$GOOGLE_STORAGE_BUCKET/**
|
||||
gsutil -m rsync -R build gs://$GOOGLE_STORAGE_BUCKET
|
||||
#fi
|
||||
|
||||
workflows:
|
||||
version: 2
|
||||
|
||||
# PULL REQUESTS
|
||||
pull_requests:
|
||||
PR_CHECKS:
|
||||
jobs:
|
||||
- build_and_test:
|
||||
- UNIT_TESTS:
|
||||
filters:
|
||||
branches:
|
||||
ignore:
|
||||
- master
|
||||
- feature/*
|
||||
- hotfix/*
|
||||
- e2e_test:
|
||||
# E2E: PWA
|
||||
- cypress/run:
|
||||
name: 'E2E: PWA'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
record: false
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true yarn run build
|
||||
start: yarn run test:e2e:serve
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
requires:
|
||||
- build_and_test
|
||||
- UNIT_TESTS
|
||||
# E2E: script-tag
|
||||
- cypress/run:
|
||||
name: 'E2E: Script Tag'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
record: false
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true yarn run build:package
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
requires:
|
||||
- UNIT_TESTS
|
||||
|
||||
# MERGE TO MASTER
|
||||
cut_release:
|
||||
PR_OPTIONAL_DOCKER_PUBLISH:
|
||||
jobs:
|
||||
- build_and_test:
|
||||
# https://circleci.com/docs/2.0/workflows/#holding-a-workflow-for-a-manual-approval
|
||||
- AWAIT_APPROVAL:
|
||||
type: approval
|
||||
# Update hub.docker.org
|
||||
- DOCKER_PR_PUBLISH:
|
||||
context: Docker Hub
|
||||
requires:
|
||||
- AWAIT_APPROVAL
|
||||
|
||||
###
|
||||
# Our workflow for building, deploying, and promoting builds across our
|
||||
# development, staging, and production environments.
|
||||
###
|
||||
DEPLOY:
|
||||
jobs:
|
||||
- BUILD:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- e2e_test:
|
||||
- DEPLOY_TO_DEV:
|
||||
requires:
|
||||
- build_and_test
|
||||
# Update NPM
|
||||
- npm_publish:
|
||||
- BUILD
|
||||
- PROMOTE_TO_STAGING:
|
||||
type: approval
|
||||
requires:
|
||||
- e2e_test
|
||||
# Update docs.ohif.org
|
||||
- docs_publish:
|
||||
- DEPLOY_TO_DEV
|
||||
- DEPLOY_TO_STAGING:
|
||||
requires:
|
||||
- e2e_test
|
||||
# Update hub.docker.org
|
||||
- docker_publish:
|
||||
- PROMOTE_TO_STAGING
|
||||
- PROMOTE_TO_PRODUCTION:
|
||||
type: approval
|
||||
requires:
|
||||
- npm_publish
|
||||
# Update viewer.ohif.org
|
||||
- build_demo_site:
|
||||
- DEPLOY_TO_STAGING
|
||||
- DEPLOY_TO_PRODUCTION:
|
||||
requires:
|
||||
- e2e_test
|
||||
- demo_site_publish:
|
||||
- PROMOTE_TO_PRODUCTION
|
||||
###
|
||||
# Unit and E2E tests have already run for PR_CHECKS
|
||||
# Re-running should not gain us any confidence here
|
||||
###
|
||||
RELEASE:
|
||||
jobs:
|
||||
- NPM_PUBLISH:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- DOCS_PUBLISH:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- DOCKER_MASTER_PUBLISH:
|
||||
requires:
|
||||
- build_demo_site
|
||||
- NPM_PUBLISH
|
||||
#
|
||||
#
|
||||
# Potentially use to E2E test STAGING environment
|
||||
# before publishing to production
|
||||
# - cypress/run:
|
||||
# name: 'E2E: PWA'
|
||||
# executor: deploy-to-prod-executor
|
||||
# browser: chrome
|
||||
# working_directory: platform/viewer
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# yarn: true
|
||||
# record: false
|
||||
# no-workspace: true
|
||||
# store_artifacts: true
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/viewer/cypress/screenshots
|
||||
# - store_test_results:
|
||||
# path: cypress/results
|
||||
@@ -1,15 +0,0 @@
|
||||
<script>
|
||||
// Note: This is a client access token so there is no issue with having it publicly available
|
||||
var _rollbarConfig = {
|
||||
accessToken: "739c64cd39e84592ba062bc29aac9769",
|
||||
captureUncaught: true,
|
||||
captureUnhandledRejections: true,
|
||||
payload: {
|
||||
environment: "viewer.ohif.org"
|
||||
}
|
||||
};
|
||||
// Rollbar Snippet
|
||||
!function(r){var e={};function o(n){if(e[n])return e[n].exports;var t=e[n]={i:n,l:!1,exports:{}};return r[n].call(t.exports,t,t.exports,o),t.l=!0,t.exports}o.m=r,o.c=e,o.d=function(r,e,n){o.o(r,e)||Object.defineProperty(r,e,{enumerable:!0,get:n})},o.r=function(r){"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(r,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(r,"__esModule",{value:!0})},o.t=function(r,e){if(1&e&&(r=o(r)),8&e)return r;if(4&e&&"object"==typeof r&&r&&r.__esModule)return r;var n=Object.create(null);if(o.r(n),Object.defineProperty(n,"default",{enumerable:!0,value:r}),2&e&&"string"!=typeof r)for(var t in r)o.d(n,t,function(e){return r[e]}.bind(null,t));return n},o.n=function(r){var e=r&&r.__esModule?function(){return r.default}:function(){return r};return o.d(e,"a",e),e},o.o=function(r,e){return Object.prototype.hasOwnProperty.call(r,e)},o.p="",o(o.s=0)}([function(r,e,o){var n=o(1),t=o(4);_rollbarConfig=_rollbarConfig||{},_rollbarConfig.rollbarJsUrl=_rollbarConfig.rollbarJsUrl||"https://cdnjs.cloudflare.com/ajax/libs/rollbar.js/2.7.1/rollbar.min.js",_rollbarConfig.async=void 0===_rollbarConfig.async||_rollbarConfig.async;var a=n.setupShim(window,_rollbarConfig),l=t(_rollbarConfig);window.rollbar=n.Rollbar,a.loadFull(window,document,!_rollbarConfig.async,_rollbarConfig,l)},function(r,e,o){var n=o(2);function t(r){return function(){try{return r.apply(this,arguments)}catch(r){try{console.error("[Rollbar]: Internal error",r)}catch(r){}}}}var a=0;function l(r,e){this.options=r,this._rollbarOldOnError=null;var o=a++;this.shimId=function(){return o},"undefined"!=typeof window&&window._rollbarShims&&(window._rollbarShims[o]={handler:e,messages:[]})}var i=o(3),d=function(r,e){return new l(r,e)},c=function(r){return new i(d,r)};function s(r){return t(function(){var e=Array.prototype.slice.call(arguments,0),o={shim:this,method:r,args:e,ts:new Date};window._rollbarShims[this.shimId()].messages.push(o)})}l.prototype.loadFull=function(r,e,o,n,a){var l=!1,i=e.createElement("script"),d=e.getElementsByTagName("script")[0],c=d.parentNode;i.crossOrigin="",i.src=n.rollbarJsUrl,o||(i.async=!0),i.onload=i.onreadystatechange=t(function(){if(!(l||this.readyState&&"loaded"!==this.readyState&&"complete"!==this.readyState)){i.onload=i.onreadystatechange=null;try{c.removeChild(i)}catch(r){}l=!0,function(){var e;if(void 0===r._rollbarDidLoad){e=new Error("rollbar.js did not load");for(var o,n,t,l,i=0;o=r._rollbarShims[i++];)for(o=o.messages||[];n=o.shift();)for(t=n.args||[],i=0;i<t.length;++i)if("function"==typeof(l=t[i])){l(e);break}}"function"==typeof a&&a(e)}()}}),c.insertBefore(i,d)},l.prototype.wrap=function(r,e,o){try{var n;if(n="function"==typeof e?e:function(){return e||{}},"function"!=typeof r)return r;if(r._isWrap)return r;if(!r._rollbar_wrapped&&(r._rollbar_wrapped=function(){o&&"function"==typeof o&&o.apply(this,arguments);try{return r.apply(this,arguments)}catch(o){var e=o;throw e&&("string"==typeof e&&(e=new String(e)),e._rollbarContext=n()||{},e._rollbarContext._wrappedSource=r.toString(),window._rollbarWrappedError=e),e}},r._rollbar_wrapped._isWrap=!0,r.hasOwnProperty))for(var t in r)r.hasOwnProperty(t)&&(r._rollbar_wrapped[t]=r[t]);return r._rollbar_wrapped}catch(e){return r}};for(var p="log,debug,info,warn,warning,error,critical,global,configure,handleUncaughtException,handleUnhandledRejection,captureEvent,captureDomContentLoaded,captureLoad".split(","),u=0;u<p.length;++u)l.prototype[p[u]]=s(p[u]);r.exports={setupShim:function(r,e){if(r){var o=e.globalAlias||"Rollbar";if("object"==typeof r[o])return r[o];r._rollbarShims={},r._rollbarWrappedError=null;var a=new c(e);return t(function(){e.captureUncaught&&(a._rollbarOldOnError=r.onerror,n.captureUncaughtExceptions(r,a,!0),n.wrapGlobals(r,a,!0)),e.captureUnhandledRejections&&n.captureUnhandledRejections(r,a,!0);var t=e.autoInstrument;return!1!==e.enabled&&(void 0===t||!0===t||"object"==typeof t&&t.network)&&r.addEventListener&&(r.addEventListener("load",a.captureLoad.bind(a)),r.addEventListener("DOMContentLoaded",a.captureDomContentLoaded.bind(a))),r[o]=a,a})()}},Rollbar:c}},function(r,e){function o(r,e,o){if(e.hasOwnProperty&&e.hasOwnProperty("addEventListener")){for(var n=e.addEventListener;n._rollbarOldAdd&&n.belongsToShim;)n=n._rollbarOldAdd;var t=function(e,o,t){n.call(this,e,r.wrap(o),t)};t._rollbarOldAdd=n,t.belongsToShim=o,e.addEventListener=t;for(var a=e.removeEventListener;a._rollbarOldRemove&&a.belongsToShim;)a=a._rollbarOldRemove;var l=function(r,e,o){a.call(this,r,e&&e._rollbar_wrapped||e,o)};l._rollbarOldRemove=a,l.belongsToShim=o,e.removeEventListener=l}}r.exports={captureUncaughtExceptions:function(r,e,o){if(r){var n;if("function"==typeof e._rollbarOldOnError)n=e._rollbarOldOnError;else if(r.onerror){for(n=r.onerror;n._rollbarOldOnError;)n=n._rollbarOldOnError;e._rollbarOldOnError=n}var t=function(){var o=Array.prototype.slice.call(arguments,0);!function(r,e,o,n){r._rollbarWrappedError&&(n[4]||(n[4]=r._rollbarWLine truncated
|
||||
// End Rollbar Snippet
|
||||
</script>
|
||||
</head>
|
||||
@@ -8,5 +8,18 @@ coverage:
|
||||
status:
|
||||
project:
|
||||
default:
|
||||
threshold: 0.10%
|
||||
threshold: 0.5%
|
||||
core:
|
||||
flags: core
|
||||
threshold: 0.5%
|
||||
viewer:
|
||||
flags: viewer
|
||||
threshold: 0.5%
|
||||
patch: off
|
||||
flags:
|
||||
core:
|
||||
paths:
|
||||
- platform/core
|
||||
viewer:
|
||||
paths:
|
||||
- platform/viewer
|
||||
@@ -0,0 +1,19 @@
|
||||
#!/bin/bash
|
||||
|
||||
# If CLIENT_ID is specified, use the google.js configuration with the modified ID
|
||||
if [ ! -z "$CLIENT_ID" ]
|
||||
then
|
||||
echo "Google Cloud Healthcare $CLIENT_ID has been provided: "
|
||||
echo $CLIENT_ID
|
||||
echo "Updating config..."
|
||||
|
||||
# - Use SED to replace the CLIENT_ID that is currently in google.js
|
||||
sed -i -e "s/YOURCLIENTID.apps.googleusercontent.com/$CLIENT_ID/g" /usr/share/nginx/html/google.js
|
||||
|
||||
# - Copy google.js to overwrite app-config.js
|
||||
cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
|
||||
fi
|
||||
|
||||
echo "Starting Nginx to serve the OHIF Viewer..."
|
||||
|
||||
exec "$@"
|
||||
@@ -1,3 +1,6 @@
|
||||
# Reduces size of context and hides
|
||||
# files from Docker (can't COPY or ADD these)
|
||||
|
||||
# Output
|
||||
dist/
|
||||
build/
|
||||
@@ -18,6 +21,10 @@ dockerfile
|
||||
.circleci
|
||||
|
||||
# Unnecessary things to pull into container
|
||||
extensions
|
||||
docs
|
||||
cypress
|
||||
.circleci/
|
||||
.github/
|
||||
.netlify/
|
||||
.scripts/
|
||||
.vscode/
|
||||
coverage/
|
||||
docs/
|
||||
@@ -1,13 +1 @@
|
||||
##
|
||||
# EXAMPLE
|
||||
#
|
||||
# Read more about .env files when using create-react-app here:
|
||||
# https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env
|
||||
#
|
||||
|
||||
PUBLIC_URL=/demo
|
||||
|
||||
#
|
||||
# Most vars require REACT_APP_* naming
|
||||
#
|
||||
REACT_APP_CONFIG=config/netlify.js
|
||||
PERCY_TOKEN=<your token here>
|
||||
@@ -1,5 +1,10 @@
|
||||
{
|
||||
"extends": ["react-app", "eslint:recommended", "plugin:react/recommended"],
|
||||
"extends": [
|
||||
"react-app",
|
||||
"eslint:recommended",
|
||||
"plugin:react/recommended",
|
||||
"plugin:prettier/recommended"
|
||||
],
|
||||
"parser": "babel-eslint",
|
||||
"env": {
|
||||
"jest": true
|
||||
@@ -11,6 +16,7 @@
|
||||
},
|
||||
"globals": {
|
||||
"cy": true,
|
||||
"before": true,
|
||||
"context": true,
|
||||
"Cypress": true,
|
||||
"assert": true
|
||||
@@ -1,40 +0,0 @@
|
||||
# These settings are for any web project
|
||||
|
||||
# Handle line endings automatically for files detected as text
|
||||
# and leave all files detected as binary untouched.
|
||||
* text=auto
|
||||
|
||||
# Force the following filetypes to have unix eols, so Windows does not break them
|
||||
*.* text eol=lf
|
||||
|
||||
# Windows forced line-endings
|
||||
/.idea/* text eol=crlf
|
||||
|
||||
#
|
||||
## These files are binary and should be left untouched
|
||||
#
|
||||
|
||||
# (binary is a macro for -text -diff)
|
||||
*.png binary
|
||||
*.jpg binary
|
||||
*.jpeg binary
|
||||
*.gif binary
|
||||
*.ico binary
|
||||
*.mov binary
|
||||
*.mp4 binary
|
||||
*.mp3 binary
|
||||
*.flv binary
|
||||
*.fla binary
|
||||
*.swf binary
|
||||
*.gz binary
|
||||
*.zip binary
|
||||
*.7z binary
|
||||
*.ttf binary
|
||||
*.eot binary
|
||||
*.woff binary
|
||||
*.pyc binary
|
||||
*.pdf binary
|
||||
*.ez binary
|
||||
*.bz2 binary
|
||||
*.swp binary
|
||||
*.fig binary
|
||||
@@ -0,0 +1,33 @@
|
||||
---
|
||||
name: "\U0001F41B Bug report"
|
||||
about: Create a report to help us improve
|
||||
title: ''
|
||||
labels: 'Community: Report :bug:, Awaiting Reproduction, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
> **Before Creating an issue**
|
||||
>
|
||||
> - Are you running the latest version?
|
||||
> - Are you reporting to the correct repository?
|
||||
> - Did you search existing issues?
|
||||
|
||||
## Bug Report
|
||||
|
||||
### Describe the Bug
|
||||
|
||||
_A clear and concise description of what the bug is._
|
||||
|
||||
### What steps can we follow to reproduce the bug?
|
||||
|
||||
1. First step
|
||||
2. Second step
|
||||
3. ...
|
||||
|
||||
```js
|
||||
Please use code blocks to show formatted errors or code snippets
|
||||
```
|
||||
|
||||
> :warning: Reports we cannot reproduce are at risk of being marked stale and
|
||||
> closed. The more information you can provide, the more likely we are to look
|
||||
> into and address your issue.
|
||||
@@ -0,0 +1,25 @@
|
||||
---
|
||||
name: "\U0001F680 Feature request"
|
||||
about: Suggest an idea for this project
|
||||
title: ''
|
||||
labels: 'Community: Request :hand:, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
> :hand: Many people requests features. Tell us why yours is important to the
|
||||
> community. How does it add value? Why _this feature_?
|
||||
>
|
||||
> Is your request very specific to your needs? Consider
|
||||
> [contributing it](https://docs.ohif.org/contributing.html) yourself! Or reach
|
||||
> out to a community member that offers
|
||||
> [consulting services](https://docs.ohif.org/help.html#paid--commercial).
|
||||
|
||||
## Request
|
||||
|
||||
**What feature or change would you like to see made?**
|
||||
|
||||
...
|
||||
|
||||
**Why should we prioritize this feature?**
|
||||
|
||||
...
|
||||
@@ -0,0 +1,18 @@
|
||||
---
|
||||
name: "\U0001F917 Support Question"
|
||||
about: "I have a question \U0001F4AC"
|
||||
title: ''
|
||||
labels: 'Community: Question :question:, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
> :hand: We are a small team with limited resources. Your question is much more
|
||||
> likely to be answered if it is
|
||||
> [a good question](https://stackoverflow.com/help/how-to-ask)
|
||||
|
||||
**Description**
|
||||
|
||||
Questions can often be answered by our documentation. Unable to find an answer
|
||||
in our docs? We'll try to help. In the meantime, if you answer your own
|
||||
question, please respond with the answer here so that others may benefit as
|
||||
well. Better yet, open a PR to expand our docs ^\_^
|
||||
@@ -0,0 +1,16 @@
|
||||
### PR Checklist
|
||||
|
||||
- [ ] Brief description of changes
|
||||
- [ ] Links to any relevant issues
|
||||
- [ ] Required status checks are passing
|
||||
- [ ] User cases if changes impact the user's experience
|
||||
- [ ] `@mention` a maintainer to request a review
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/
|
||||
[script]: https://github.com/jklukas/git-push-fork-to-upstream-branch
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -0,0 +1,28 @@
|
||||
# GitHub App: Stale
|
||||
# https://github.com/apps/stale
|
||||
#
|
||||
# Number of days of inactivity before an issue becomes stale
|
||||
daysUntilStale: 21
|
||||
# Number of days of inactivity before a stale issue is closed
|
||||
daysUntilClose: 7
|
||||
# Issues with these labels will never be considered stale
|
||||
exemptLabels:
|
||||
- 'Story :raised_hands:'
|
||||
- 'Bug: Verified :bug:'
|
||||
- 'Task: CI/Tooling 🤖'
|
||||
- 'Task: Docs 📖'
|
||||
- 'Task: Docs :book:'
|
||||
- 'Task: Refactor 🛠'
|
||||
- 'Task: Tests :microscope:'
|
||||
- 'PR: Awaiting Review 👀'
|
||||
- 'Triage :white_flag:'
|
||||
- 'Announcement 🎉'
|
||||
# Label to use when marking an issue as stale
|
||||
staleLabel: 'Stale :baguette_bread:'
|
||||
# Comment to post when marking an issue as stale. Set to `false` to disable
|
||||
markComment: >
|
||||
This issue has been automatically marked as stale because it has not had
|
||||
recent activity. It will be closed if no further activity occurs. Thank you
|
||||
for your contributions.
|
||||
# Comment to post when closing a stale issue. Set to `false` to disable
|
||||
closeComment: false
|
||||
@@ -8,6 +8,7 @@ docs/_book
|
||||
src/version.js
|
||||
junit.xml
|
||||
coverage/
|
||||
.docz/
|
||||
|
||||
# YALC (for Erik)
|
||||
.yalc
|
||||
@@ -20,6 +21,7 @@ npm-debug.log
|
||||
package-lock.json
|
||||
yarn-error.log
|
||||
.DS_Store
|
||||
.env
|
||||
|
||||
# Common Example Data Directories
|
||||
sampledata/
|
||||
@@ -27,7 +29,7 @@ example/deps/
|
||||
docker/dcm4che/dcm4che-arc
|
||||
|
||||
# Cypress test results
|
||||
cypress/videos/
|
||||
videos/
|
||||
|
||||
# Locize settings
|
||||
.locize
|
||||
.locize
|
||||
@@ -1,45 +0,0 @@
|
||||
{
|
||||
"requireCurlyBraces": {
|
||||
"keywords": [ "if", "else", "for", "while", "do" ],
|
||||
"allExcept" : ["return" , "continue", "break"]
|
||||
},
|
||||
"requireSpaceAfterKeywords": [ "if", "else", "for", "while", "do", "switch", "return" ],
|
||||
"requireSpacesInFunctionExpression": {
|
||||
"beforeOpeningCurlyBrace": true
|
||||
},
|
||||
"disallowSpacesInFunctionExpression": {
|
||||
"beforeOpeningRoundBrace": true
|
||||
},
|
||||
"disallowSpacesInsideParentheses": true,
|
||||
"disallowKeywordsOnNewLine": ["else"],
|
||||
"disallowNewlineBeforeBlockStatements": true,
|
||||
"requirePaddingNewLinesAfterUseStrict": true,
|
||||
"requirePaddingNewLinesAfterBlocks": {
|
||||
"allExcept": ["inCallExpressions", "inArrayExpressions", "inProperties"]
|
||||
},
|
||||
"requireObjectKeysOnNewLine": true,
|
||||
"requireSemicolons": true,
|
||||
"requireSpaceAfterBinaryOperators": true,
|
||||
"requireSpaceAfterComma": true,
|
||||
"requireSpaceBeforeObjectValues": true,
|
||||
"requireSpacesInsideObjectBrackets": "all",
|
||||
"requireLineBreakAfterVariableAssignment": true,
|
||||
"requireSpaceBeforeBinaryOperators": ["+", "-", "/", "*", "=", "==", "===", "!=", "!=="],
|
||||
"disallowSpaceAfterPrefixUnaryOperators": ["++", "--", "+", "-"],
|
||||
"disallowSpaceBeforePostfixUnaryOperators": ["++", "--"],
|
||||
"disallowKeywords": [ "with" ],
|
||||
"disallowMultipleLineBreaks": true,
|
||||
"requireLineFeedAtFileEnd": true,
|
||||
"disallowSpaceAfterObjectKeys": true,
|
||||
"disallowQuotedKeysInObjects": true,
|
||||
"disallowMultipleSpaces": true,
|
||||
"disallowVar": true,
|
||||
"validateLineBreaks": "LF",
|
||||
"validateIndentation": 4,
|
||||
"validateQuoteMarks": {
|
||||
"mark": "'",
|
||||
"escape": true
|
||||
},
|
||||
"validateParameterSeparator": ", ",
|
||||
"requireDollarBeforejQueryAssignment": true
|
||||
}
|
||||
@@ -1,93 +0,0 @@
|
||||
{
|
||||
// JSHint Default Configuration File (as on JSHint website)
|
||||
// See http://jshint.com/docs/ for more details
|
||||
|
||||
"maxerr" : 50, // {int} Maximum error before stopping
|
||||
|
||||
// Enforcing
|
||||
"bitwise" : true, // true: Prohibit bitwise operators (&, |, ^, etc.)
|
||||
"camelcase" : false, // true: Identifiers must be in camelCase
|
||||
"curly" : false, // true: Require {} for every new block or scope
|
||||
"eqeqeq" : true, // true: Require triple equals (===) for comparison
|
||||
"forin" : true, // true: Require filtering for..in loops with obj.hasOwnProperty()
|
||||
"freeze" : true, // true: prohibits overwriting prototypes of native objects such as Array, Date etc.
|
||||
"immed" : false, // true: Require immediate invocations to be wrapped in parens e.g. `(function () { } ());`
|
||||
"latedef" : false, // true: Require variables/functions to be defined before being used
|
||||
"newcap" : false, // true: Require capitalization of all constructor functions e.g. `new F()`
|
||||
"noarg" : true, // true: Prohibit use of `arguments.caller` and `arguments.callee`
|
||||
"noempty" : true, // true: Prohibit use of empty blocks
|
||||
"nonbsp" : true, // true: Prohibit "non-breaking whitespace" characters.
|
||||
"nonew" : false, // true: Prohibit use of constructors for side-effects (without assignment)
|
||||
"plusplus" : false, // true: Prohibit use of `++` and `--`
|
||||
"quotmark" : false, // Quotation mark consistency:
|
||||
// false : do nothing (default)
|
||||
// true : ensure whatever is used is consistent
|
||||
// "single" : require single quotes
|
||||
// "double" : require double quotes
|
||||
"undef" : true, // true: Require all non-global variables to be declared (prevents global leaks)
|
||||
"unused" : "vars", // Unused variables:
|
||||
// true : all variables, last function parameter
|
||||
// "vars" : all variables only
|
||||
// "strict" : all variables, all function parameters
|
||||
"strict" : false, // true: Requires all functions run in ES5 Strict Mode
|
||||
"maxparams" : false, // {int} Max number of formal params allowed per function
|
||||
"maxdepth" : false, // {int} Max depth of nested blocks (within functions)
|
||||
"maxstatements" : false, // {int} Max number statements per function
|
||||
"maxcomplexity" : false, // {int} Max cyclomatic complexity per function
|
||||
"maxlen" : false, // {int} Max number of characters per line
|
||||
"varstmt" : false, // true: Disallow any var statements. Only `let` and `const` are allowed.
|
||||
|
||||
// Relaxing
|
||||
"asi" : false, // true: Tolerate Automatic Semicolon Insertion (no semicolons)
|
||||
"boss" : false, // true: Tolerate assignments where comparisons would be expected
|
||||
"debug" : false, // true: Allow debugger statements e.g. browser breakpoints.
|
||||
"eqnull" : false, // true: Tolerate use of `== null`
|
||||
"es5" : true, // true: Allow ES5 syntax (ex: getters and setters)
|
||||
"esnext" : true, // true: Allow ES.next (ES6) syntax (ex: `const`)
|
||||
"moz" : false, // true: Allow Mozilla specific syntax (extends and overrides esnext features)
|
||||
// (ex: `for each`, multiple try/catch, function expression…)
|
||||
"evil" : false, // true: Tolerate use of `eval` and `new Function()`
|
||||
"expr" : false, // true: Tolerate `ExpressionStatement` as Programs
|
||||
"funcscope" : false, // true: Tolerate defining variables inside control statements
|
||||
"globalstrict" : false, // true: Allow global "use strict" (also enables 'strict')
|
||||
"iterator" : false, // true: Tolerate using the `__iterator__` property
|
||||
"lastsemic" : false, // true: Tolerate omitting a semicolon for the last statement of a 1-line block
|
||||
"laxbreak" : false, // true: Tolerate possibly unsafe line breakings
|
||||
"laxcomma" : false, // true: Tolerate comma-first style coding
|
||||
"loopfunc" : false, // true: Tolerate functions being defined in loops
|
||||
"multistr" : false, // true: Tolerate multi-line strings
|
||||
"noyield" : false, // true: Tolerate generator functions with no yield statement in them.
|
||||
"notypeof" : false, // true: Tolerate invalid typeof operator values
|
||||
"proto" : false, // true: Tolerate using the `__proto__` property
|
||||
"scripturl" : false, // true: Tolerate script-targeted URLs
|
||||
"shadow" : false, // true: Allows re-define variables later in code e.g. `var x=1; x=2;`
|
||||
"sub" : false, // true: Tolerate using `[]` notation when it can still be expressed in dot notation
|
||||
"supernew" : false, // true: Tolerate `new function () { ... };` and `new Object;`
|
||||
"validthis" : false, // true: Tolerate using this in a non-constructor function
|
||||
|
||||
// Environments
|
||||
"browser" : true, // Web Browser (window, document, etc)
|
||||
"browserify" : false, // Browserify (node.js code in the browser)
|
||||
"couch" : false, // CouchDB
|
||||
"devel" : false, // Development/debugging (alert, confirm, etc)
|
||||
"dojo" : false, // Dojo Toolkit
|
||||
"jasmine" : false, // Jasmine
|
||||
"jquery" : true, // jQuery
|
||||
"mocha" : false, // Mocha
|
||||
"mootools" : false, // MooTools
|
||||
"node" : false, // Node.js
|
||||
"nonstandard" : false, // Widely adopted globals (escape, unescape, etc)
|
||||
"phantom" : false, // PhantomJS
|
||||
"prototypejs" : false, // Prototype and Scriptaculous
|
||||
"qunit" : false, // QUnit
|
||||
"rhino" : false, // Rhino
|
||||
"shelljs" : false, // ShellJS
|
||||
"typed" : false, // Globals for typed array constructions
|
||||
"worker" : false, // Web Workers
|
||||
"wsh" : false, // Windows Scripting Host
|
||||
"yui" : false, // Yahoo User Interface
|
||||
"globals" : {
|
||||
"require": true,
|
||||
"Package": true // Meteor Package definition
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,27 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Set directory to location of this script
|
||||
# https://stackoverflow.com/a/3355423/1867984
|
||||
cd "$(dirname "$0")"
|
||||
cd .. # Up to project root
|
||||
|
||||
# Helpful to verify which versions we're using
|
||||
yarn -v
|
||||
node -v
|
||||
|
||||
# Install build deps and all monorepo package dependencies. Yarn Workspaces
|
||||
# should also symlink all projects appropriately
|
||||
yarn install --no-ignore-optional --pure-lockfile
|
||||
|
||||
# Build && Move PWA Output
|
||||
yarn run build:ci
|
||||
mkdir -p ./.netlify/www/pwa
|
||||
mv platform/viewer/dist/* .netlify/www/pwa -v
|
||||
|
||||
# Build && Move script output
|
||||
# yarn run build:package
|
||||
|
||||
echo 'Nothing left to see here. Go home, folks.'
|
||||
|
||||
# Build using react-scripts
|
||||
# npx cross-env PUBLIC_URL=/demo APP_CONFIG=config/netlify.js react-scripts --max_old_space_size=4096 build
|
||||
@@ -0,0 +1,5 @@
|
||||
# Specific to our non-deploy-preview deploys
|
||||
# Confgure redirects using netlify.toml
|
||||
|
||||
# PWA Redirect
|
||||
/* /index.html 200
|
||||
@@ -0,0 +1,15 @@
|
||||
{
|
||||
"name": "root",
|
||||
"private": true,
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"scripts": {
|
||||
"deploy": "netlify deploy --prod --dir ./../platform/viewer/dist"
|
||||
},
|
||||
"devDependencies": {
|
||||
"netlify-cli": "^2.21.0"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,6 @@
|
||||
# Specific to our deploy-preview
|
||||
# Our docs are published using CircleCI + GitBook
|
||||
# Confgure redirects using netlify.toml
|
||||
|
||||
# PWA Demo
|
||||
/pwa/* /pwa/index.html 200
|
||||
@@ -0,0 +1,14 @@
|
||||
<html>
|
||||
<head>
|
||||
<title>OHIF Viewer: Deploy Preview</title>
|
||||
</head>
|
||||
<body>
|
||||
<h1>Index of Previews</h1>
|
||||
|
||||
<ul>
|
||||
<li>
|
||||
<a href="/pwa">Progressive Web App</a>
|
||||
</li>
|
||||
</ul>
|
||||
</body>
|
||||
</html>
|
||||
@@ -4,6 +4,5 @@
|
||||
"proseWrap": "always",
|
||||
"tabWidth": 2,
|
||||
"semi": true,
|
||||
"singleQuote": true,
|
||||
"endOfLine": "lf"
|
||||
"singleQuote": true
|
||||
}
|
||||
@@ -1,14 +0,0 @@
|
||||
{
|
||||
"plugins": [
|
||||
"@semantic-release/commit-analyzer",
|
||||
"@semantic-release/release-notes-generator",
|
||||
"@semantic-release/npm",
|
||||
"@semantic-release/github",
|
||||
[
|
||||
"@semantic-release/exec",
|
||||
{
|
||||
"publishCmd": "mkdir tmp && echo ${nextRelease.version} > tmp/updated-version.txt"
|
||||
}
|
||||
]
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,14 @@
|
||||
#!/bin/bash
|
||||
# https://github.com/shelljs/shelljs
|
||||
# https://github.com/shelljs/shelljs#exclude-options
|
||||
PROJECT=$1
|
||||
|
||||
if [ -z "$PROJECT" ]
|
||||
then
|
||||
# Default
|
||||
npx lerna run dev:viewer
|
||||
else
|
||||
eval "npx lerna run dev:$PROJECT"
|
||||
fi
|
||||
|
||||
read -p 'Press [Enter] key to continue...'
|
||||
@@ -1,30 +1,32 @@
|
||||
{
|
||||
"editor.rulers": [80, 120],
|
||||
|
||||
// ===
|
||||
// Spacing
|
||||
// ===
|
||||
|
||||
"editor.insertSpaces": true,
|
||||
"editor.tabSize": 2,
|
||||
"editor.trimAutoWhitespace": true,
|
||||
"files.trimTrailingWhitespace": true,
|
||||
"files.eol": "\n",
|
||||
"files.insertFinalNewline": true,
|
||||
"files.trimFinalNewlines": true,
|
||||
|
||||
// ===
|
||||
// Event Triggers
|
||||
// ===
|
||||
|
||||
"editor.formatOnSave": true,
|
||||
"eslint.autoFixOnSave": true,
|
||||
"eslint.run": "onSave",
|
||||
"eslint.validate": [
|
||||
{ "language": "javascript", "autoFix": true },
|
||||
{ "language": "javascriptreact", "autoFix": true }
|
||||
],
|
||||
"prettier.disableLanguages": [],
|
||||
"prettier.endOfLine": "lf"
|
||||
}
|
||||
|
||||
"editor.rulers": [80, 120],
|
||||
// ===
|
||||
// Spacing
|
||||
// ===
|
||||
"editor.insertSpaces": true,
|
||||
"editor.tabSize": 2,
|
||||
"editor.trimAutoWhitespace": true,
|
||||
"files.trimTrailingWhitespace": true,
|
||||
"files.eol": "\n",
|
||||
"files.insertFinalNewline": true,
|
||||
"files.trimFinalNewlines": true,
|
||||
// ===
|
||||
// Event Triggers
|
||||
// ===
|
||||
"editor.formatOnSave": true,
|
||||
"eslint.autoFixOnSave": true,
|
||||
"eslint.run": "onSave",
|
||||
"eslint.validate": [
|
||||
{
|
||||
"language": "javascript",
|
||||
"autoFix": true
|
||||
},
|
||||
{
|
||||
"language": "javascriptreact",
|
||||
"autoFix": true
|
||||
}
|
||||
],
|
||||
"prettier.disableLanguages": ["html"],
|
||||
"prettier.endOfLine": "lf",
|
||||
"workbench.colorCustomizations": {}
|
||||
}
|
||||
@@ -0,0 +1,22 @@
|
||||
const path = require('path');
|
||||
|
||||
function excludeNodeModulesExcept(modules) {
|
||||
var pathSep = path.sep;
|
||||
if (pathSep == '\\')
|
||||
// must be quoted for use in a regexp:
|
||||
pathSep = '\\\\';
|
||||
var moduleRegExps = modules.map(function(modName) {
|
||||
return new RegExp('node_modules' + pathSep + modName);
|
||||
});
|
||||
|
||||
return function(modulePath) {
|
||||
if (/node_modules/.test(modulePath)) {
|
||||
for (var i = 0; i < moduleRegExps.length; i++)
|
||||
if (moduleRegExps[i].test(modulePath)) return false;
|
||||
return true;
|
||||
}
|
||||
return false;
|
||||
};
|
||||
}
|
||||
|
||||
module.exports = excludeNodeModulesExcept;
|
||||
@@ -0,0 +1,17 @@
|
||||
const autoprefixer = require('autoprefixer');
|
||||
|
||||
const cssToJavaScript = {
|
||||
test: /\.css$/,
|
||||
use: [
|
||||
'style-loader',
|
||||
{ loader: 'css-loader', options: { importLoaders: 1 } },
|
||||
{
|
||||
loader: 'postcss-loader',
|
||||
options: {
|
||||
plugins: () => [autoprefixer('last 2 version', 'ie >= 11')],
|
||||
},
|
||||
},
|
||||
],
|
||||
};
|
||||
|
||||
module.exports = cssToJavaScript;
|
||||
@@ -0,0 +1,10 @@
|
||||
/**
|
||||
* This is exclusively used by `vtk.js` to bundle glsl files.
|
||||
*/
|
||||
const loadShaders = {
|
||||
test: /\.glsl$/i,
|
||||
include: /vtk\.js[\/\\]Sources/,
|
||||
loader: 'shader-loader',
|
||||
};
|
||||
|
||||
module.exports = loadShaders;
|
||||
@@ -0,0 +1,17 @@
|
||||
/**
|
||||
* This allows us to include web workers in our bundle, and VTK.js
|
||||
* web workers in our bundle. While this increases bundle size, it
|
||||
* cuts down on the number of includes we need for `script tag` usage.
|
||||
*/
|
||||
const loadWebWorkers = {
|
||||
test: /\.worker\.js$/,
|
||||
include: /vtk\.js[\/\\]Sources/,
|
||||
use: [
|
||||
{
|
||||
loader: 'worker-loader',
|
||||
options: { inline: true, fallback: false },
|
||||
},
|
||||
],
|
||||
};
|
||||
|
||||
module.exports = loadWebWorkers;
|
||||
@@ -0,0 +1,10 @@
|
||||
const stylusToJavaScript = {
|
||||
test: /\.styl$/,
|
||||
use: [
|
||||
{ loader: 'style-loader' }, // 3. Style nodes from JS Strings
|
||||
{ loader: 'css-loader' }, // 2. CSS to CommonJS
|
||||
{ loader: 'stylus-loader' }, // 1. Stylus to CSS
|
||||
],
|
||||
};
|
||||
|
||||
module.exports = stylusToJavaScript;
|
||||
@@ -0,0 +1,39 @@
|
||||
const excludeNodeModulesExcept = require('./../helpers/excludeNodeModulesExcept.js');
|
||||
|
||||
function transpileJavaScript(mode) {
|
||||
const exclude =
|
||||
mode === 'production'
|
||||
? excludeNodeModulesExcept([
|
||||
'vtk.js',
|
||||
// 'dicomweb-client',
|
||||
// https://github.com/react-dnd/react-dnd/blob/master/babel.config.js
|
||||
'react-dnd',
|
||||
// https://github.com/dcmjs-org/dcmjs/blob/master/.babelrc
|
||||
// https://github.com/react-dnd/react-dnd/issues/1342
|
||||
// 'dcmjs', // contains: loglevelnext
|
||||
// https://github.com/shellscape/loglevelnext#browser-support
|
||||
// 'loglevelnext',
|
||||
// https://github.com/dcmjs-org/dicom-microscopy-viewer/issues/35
|
||||
// 'dicom-microscopy-viewer',
|
||||
// https://github.com/openlayers/openlayers#supported-browsers
|
||||
// 'ol', --> Should be fine
|
||||
])
|
||||
: excludeNodeModulesExcept([]);
|
||||
|
||||
return {
|
||||
test: /\.jsx?$/,
|
||||
// These are packages that are not transpiled to our lowest supported
|
||||
// JS version (currently ES5). Most of these leverage ES6+ features,
|
||||
// that we need to transpile to a different syntax.
|
||||
exclude,
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
// Find babel.config.js in monorepo root
|
||||
// https://babeljs.io/docs/en/options#rootmode
|
||||
rootMode: 'upward',
|
||||
envName: mode,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
module.exports = transpileJavaScript;
|
||||
@@ -0,0 +1,108 @@
|
||||
// ~~ ENV
|
||||
const dotenv = require('dotenv');
|
||||
//
|
||||
const path = require('path');
|
||||
const webpack = require('webpack');
|
||||
const PACKAGE = require('../platform/viewer/package.json');
|
||||
// ~~ RULES
|
||||
const loadShadersRule = require('./rules/loadShaders.js');
|
||||
const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
|
||||
const transpileJavaScriptRule = require('./rules/transpileJavaScript.js');
|
||||
// ~~ PLUGINS
|
||||
const TerserJSPlugin = require('terser-webpack-plugin');
|
||||
// ~~ ENV VARS
|
||||
const NODE_ENV = process.env.NODE_ENV;
|
||||
const QUICK_BUILD = process.env.QUICK_BUILD;
|
||||
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
|
||||
|
||||
//
|
||||
dotenv.config();
|
||||
|
||||
module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
|
||||
if (!process.env.NODE_ENV) {
|
||||
throw new Error('process.env.NODE_ENV not set');
|
||||
}
|
||||
|
||||
const mode = NODE_ENV === 'production' ? 'production' : 'development';
|
||||
const isProdBuild = NODE_ENV === 'production';
|
||||
const isQuickBuild = QUICK_BUILD === 'true';
|
||||
|
||||
const config = {
|
||||
mode: isProdBuild ? 'production' : 'development',
|
||||
devtool: isProdBuild ? 'source-map' : 'cheap-module-eval-source-map',
|
||||
entry: {
|
||||
app: `${SRC_DIR}/index.js`,
|
||||
},
|
||||
optimization: {
|
||||
minimize: isProdBuild,
|
||||
sideEffects: true,
|
||||
},
|
||||
context: SRC_DIR,
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
module: {
|
||||
rules: [
|
||||
transpileJavaScriptRule(mode),
|
||||
loadWebWorkersRule,
|
||||
loadShadersRule,
|
||||
],
|
||||
},
|
||||
resolve: {
|
||||
// Which directories to search when resolving modules
|
||||
modules: [
|
||||
// Modules specific to this package
|
||||
path.resolve(__dirname, '../node_modules'),
|
||||
// Hoisted Yarn Workspace Modules
|
||||
path.resolve(__dirname, '../../../node_modules'),
|
||||
SRC_DIR,
|
||||
],
|
||||
// Attempt to resolve these extensions in order.
|
||||
extensions: ['.js', '.jsx', '.json', '*'],
|
||||
// symlinked resources are resolved to their real path, not their symlinked location
|
||||
symlinks: true,
|
||||
},
|
||||
plugins: [
|
||||
new webpack.DefinePlugin({
|
||||
'process.env.NODE_ENV': JSON.stringify(process.env.NODE_ENV),
|
||||
'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
|
||||
'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
|
||||
'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
|
||||
'process.env.VERSION_NUMBER': JSON.stringify(PACKAGE.version || ''),
|
||||
'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
|
||||
}),
|
||||
],
|
||||
// Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
|
||||
// For issue in cornerstone-wado-image-loader
|
||||
node: {
|
||||
fs: 'empty',
|
||||
},
|
||||
};
|
||||
|
||||
if (isProdBuild) {
|
||||
config.optimization.minimizer = [
|
||||
new TerserJSPlugin({
|
||||
// Supports:
|
||||
// source-map and inline-source-map
|
||||
sourceMap: isProdBuild && !isQuickBuild,
|
||||
parallel: true,
|
||||
terserOptions: {},
|
||||
}),
|
||||
];
|
||||
}
|
||||
|
||||
if (isQuickBuild) {
|
||||
config.optimization.minimize = false;
|
||||
config.devtool = false;
|
||||
}
|
||||
|
||||
return config;
|
||||
};
|
||||
@@ -0,0 +1,19 @@
|
||||
const merge = require('webpack-merge');
|
||||
const webpackBase = require('./webpack.base.js');
|
||||
const cssToJavaScriptRule = require('./rules/cssToJavaScript.js');
|
||||
const stylusToJavaScriptRule = require('./rules/stylusToJavaScript.js');
|
||||
|
||||
/**
|
||||
* WebPack configuration for CommonJS Bundles. Extends rules of BaseConfig by making
|
||||
* sure we're bundling styles and other files that would normally be split in a
|
||||
* PWA.
|
||||
*/
|
||||
module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
|
||||
const baseConfig = webpackBase(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(baseConfig, {
|
||||
module: {
|
||||
rules: [cssToJavaScriptRule, stylusToJavaScriptRule],
|
||||
},
|
||||
});
|
||||
};
|
||||
@@ -21,39 +21,44 @@
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
FROM node:11.2.0-slim as builder
|
||||
FROM node:10.16.3-slim as builder
|
||||
|
||||
# RUN apt-get update && apt-get install -y git yarn
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
|
||||
# Copy Files
|
||||
COPY .docker /usr/src/app/.docker
|
||||
COPY .webpack /usr/src/app/.webpack
|
||||
COPY extensions /usr/src/app/extensions
|
||||
COPY platform /usr/src/app/platform
|
||||
COPY .browserslistrc /usr/src/app/.browserslistrc
|
||||
COPY aliases.config.js /usr/src/app/aliases.config.js
|
||||
COPY babel.config.js /usr/src/app/babel.config.js
|
||||
COPY lerna.json /usr/src/app/lerna.json
|
||||
COPY package.json /usr/src/app/package.json
|
||||
COPY postcss.config.js /usr/src/app/postcss.config.js
|
||||
COPY yarn.lock /usr/src/app/yarn.lock
|
||||
|
||||
# Run the install before copying the rest of the files
|
||||
RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install
|
||||
|
||||
ENV PATH /usr/src/app/node_modules/.bin:$PATH
|
||||
ENV GENERATE_SOURCEMAP=false
|
||||
ENV REACT_APP_CONFIG=config/default.js
|
||||
ENV QUICK_BUILD true
|
||||
# ENV GENERATE_SOURCEMAP=false
|
||||
# ENV REACT_APP_CONFIG=config/default.js
|
||||
|
||||
# White list instead of copying the whole directory
|
||||
COPY src /usr/src/app/src
|
||||
COPY public /usr/src/app/public
|
||||
COPY .babelrc /usr/src/app/.babelrc
|
||||
COPY .eslintrc /usr/src/app/.eslintrc
|
||||
|
||||
RUN yarn run build:web
|
||||
RUN yarn run build
|
||||
|
||||
# Stage 2: Bundle the built application into a Docker container
|
||||
# which runs Nginx using Alpine Linux
|
||||
FROM nginx:1.15.5-alpine
|
||||
RUN apk add --no-cache bash
|
||||
RUN rm -rf /etc/nginx/conf.d
|
||||
COPY docker/Viewer-v2.x /etc/nginx/conf.d
|
||||
COPY docker/Viewer-v2.x/entrypoint.sh /usr/src/
|
||||
COPY .docker/Viewer-v2.x /etc/nginx/conf.d
|
||||
COPY .docker/Viewer-v2.x/entrypoint.sh /usr/src/
|
||||
RUN chmod 777 /usr/src/entrypoint.sh
|
||||
COPY --from=builder /usr/src/app/build /usr/share/nginx/html
|
||||
COPY --from=builder /usr/src/app/platform/viewer/dist /usr/share/nginx/html
|
||||
EXPOSE 80
|
||||
EXPOSE 443
|
||||
ENTRYPOINT ["/usr/src/entrypoint.sh"]
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
The MIT License (MIT)
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2015 Open Health Imaging Foundation
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
|
||||
@@ -1,8 +1,8 @@
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- markdownlint-disable -->
|
||||
<div align="center">
|
||||
<h1>ohif-viewer</h1>
|
||||
<p><strong>ohif-viewer</strong> is a zero-footprint medical image viewer provided by the <a href="http://ohif.org/">Open Health Imaging Foundation (OHIF)</a>. It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support <a href="https://www.dicomstandard.org/dicomweb/">DICOMweb</a>.</p>
|
||||
<h1>OHIF Medical Imaging Viewer</h1>
|
||||
<p><strong>The OHIF Viewer</strong> is a zero-footprint medical image viewer provided by the <a href="http://ohif.org/">Open Health Imaging Foundation (OHIF)</a>. It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support <a href="https://www.dicomstandard.org/dicomweb/">DICOMweb</a>.</p>
|
||||
</div>
|
||||
|
||||
|
||||
@@ -11,241 +11,231 @@
|
||||
<a href="https://github.com/OHIF/Viewers/tree/master/docs/latest">Edit the docs</a>
|
||||
</div>
|
||||
<div align="center">
|
||||
<a href="https://docs.ohif.org/demo">Demo</a> |
|
||||
<a href="https://ohif.canny.io/">Roadmap</a> |
|
||||
<a href="https://viewer.ohif.org/">Live Demo</a> |
|
||||
<a href="https://react.ohif.org/">Component Library</a>
|
||||
</div>
|
||||
|
||||
|
||||
<hr />
|
||||
|
||||
[![CircleCI][circleci-image]][circleci-url]
|
||||
[![codecov][codecov-image]][codecov-url]
|
||||
[](#contributors)
|
||||
[![code style: prettier][prettier-image]][prettier-url]
|
||||
[![semantic-release][semantic-image]][semantic-url]
|
||||
|
||||
[![NPM version][npm-version-image]][npm-url]
|
||||
[![NPM downloads][npm-downloads-image]][npm-url]
|
||||
[![Pulls][docker-pulls-img]][docker-image-url]
|
||||
[![MIT License][license-image]][license-url]
|
||||
<!-- markdownlint-enable -->
|
||||
[](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_shield)
|
||||
|
||||
[![Netlify Status][netlify-image]][netlify-url]
|
||||
[![CircleCI][circleci-image]][circleci-url]
|
||||
[![codecov][codecov-image]][codecov-url]
|
||||
[![This project is using Percy.io for visual regression testing.][percy-image]](percy-url)
|
||||
[](#contributors)
|
||||
<!-- prettier-ignore-end -->
|
||||
|
||||
> ATTENTION: If you are looking for Version 1 (the Meteor Version) of this
|
||||
> repository, it lives on
|
||||
> [the `v1.x` branch](https://github.com/OHIF/Viewers/tree/v1.x)
|
||||
## About
|
||||
|
||||
## Why?
|
||||
The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve
|
||||
and load images from most sources and formats; render sets in 2D, 3D, and
|
||||
reconstructed representations; allows for the manipulation, annotation, and
|
||||
serialization of observations; supports internationalization, OpenID Connect,
|
||||
offline use, hotkeys, and many more features.
|
||||
|
||||
Building a web based medical imaging viewer from scratch is time intensive, hard
|
||||
to get right, and expensive. Instead of re-inventing the wheel, you can use the
|
||||
OHIF Viewer as a rock solid platform to build on top of. The Viewer is a
|
||||
[React][react-url] [Progressive Web Application][pwa-url] that can be embedded
|
||||
in existing applications via it's [packaged source
|
||||
(ohif-viewer)][ohif-viewer-url] or hosted stand-alone. The Viewer exposes
|
||||
[configuration][configuration-url] and [extensions][extensions-url] to support
|
||||
workflow customization and advanced functionality at common integration points.
|
||||
Almost everything offers some degree of customization and configuration. If it
|
||||
doesn't support something you need, we accept pull requests and have an ever
|
||||
improving Extension System.
|
||||
|
||||
If you're interested in using the OHIF Viewer, but you're not sure it supports
|
||||
your use case [check out our docs](https://docs.ohif.org/). Still not sure, or
|
||||
you would like to propose new features? Don't hesitate to
|
||||
[create an issue](https://github.com/OHIF/Viewers/issues) or open a pull
|
||||
request.
|
||||
## Why Choose Us
|
||||
|
||||
## Getting Started
|
||||
### Community & Experience
|
||||
|
||||
This readme is specific to testing and developing locally. If you're more
|
||||
interested in production deployment strategies,
|
||||
[you can check out our documentation on publishing](https://docs.ohif.org/).
|
||||
The OHIF Viewer is a collaborative effort that has served as the basis for many
|
||||
active, production, and FDA Cleared medical imaging viewers. It benefits from
|
||||
our extensive community's collective experience, and from the sponsored
|
||||
contributions of individuals, research groups, and commercial organizations.
|
||||
|
||||
Want to play around before you dig in?
|
||||
[Check out our LIVE Demo](https://viewer.ohif.org/)
|
||||
### Built to Adapt
|
||||
|
||||
### Setup
|
||||
After more than 5-years of integrating with many companies and organizations,
|
||||
The OHIF Viewer has been rebuilt from the ground up to better address the
|
||||
varying workflow and configuration needs of its many users. All of the Viewer's
|
||||
core features are built using it's own extension system. The same extensibility
|
||||
that allows us to offer:
|
||||
|
||||
_Requirements:_
|
||||
- 2D and 3D medical image viewing
|
||||
- Multiplanar Reconstruction (MPR)
|
||||
- Maximum Intensity Project (MIP)
|
||||
- Whole slide microscopy viewing
|
||||
- PDF and Dicom Structured Report rendering
|
||||
- User Access Control (UAC)
|
||||
- Context specific toolbar and side panel content
|
||||
- and many others
|
||||
|
||||
- [NodeJS & NPM](https://nodejs.org/en/download/)
|
||||
- [Yarn](https://yarnpkg.com/lang/en/docs/install/)
|
||||
Can be leveraged by you to customize the viewer for your workflow, and to add
|
||||
any new functionality you may need (and wish to maintain privately without
|
||||
forking).
|
||||
|
||||
_Steps:_
|
||||
### Support
|
||||
|
||||
1. Fork this repository
|
||||
2. Clone your forked repository (your `origin`)
|
||||
We offer support through
|
||||
[GitHub Issues](https://github.com/OHIF/Viewers/issues/new/choose). You can:
|
||||
|
||||
- `git clone git@github.com:YOUR_GITHUB_USERNAME/Viewers.git`
|
||||
- [Report a Bug 🐛](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Report+%3Abug%3A&template=---bug-report.md)
|
||||
- [Request a Feature 🚀](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Request+%3Ahand%3A&template=---feature-request.md)
|
||||
- [Ask a Question 🤗](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Question+%3Aquestion%3A&template=---support-question.md)
|
||||
|
||||
3. Add `OHIF/Viewers` as a `remote` repository (the `upstream`)
|
||||
For commercial support, academic collaberations, and answers to common
|
||||
questions; please read our
|
||||
[documented FAQ](https://docs.ohif.org/faq/index.html#does-ohif-offer-commercial-support).
|
||||
|
||||
- `git remote add upstream git@github.com:OHIF/Viewers.git`
|
||||
## Quick Start Deployment
|
||||
|
||||
### Developing Locally
|
||||
> This is only one of many ways to configure and deploy the OHIF Viewer. To
|
||||
> learn more about your options, and how to choose the best one for your
|
||||
> requirements, check out
|
||||
> [our deployment recipes and documentation](https://docs.ohif.org/deployment/).
|
||||
|
||||
In your cloned repository's root folder, run:
|
||||
The fastest and easiest way to get started is to include the OHIF Viewer with a
|
||||
script tag. In practice, this is as simple as:
|
||||
|
||||
- Including the following dependencies with script tags:
|
||||
- [React](https://unpkg.com/react@16/umd/react.production.min.js)
|
||||
- [React Dom](https://unpkg.com/react-dom@16/umd/react-dom.production.min.js)
|
||||
- The [OHIF Viewer](https://unpkg.com/@ohif/viewer)
|
||||
- Have an element with an ID of `root` on the page
|
||||
- Configure the OHIF Viewer at `window.config`:
|
||||
|
||||
```js
|
||||
// Restore dependencies
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
- Install the viewer:
|
||||
`window.OHIFStandaloneViewer.installViewer(window.config);`
|
||||
|
||||
This exact setup is demonstrated in this
|
||||
[CodeSandbox](https://codesandbox.io/s/viewer-script-tag-tprch) and in our
|
||||
[Embedding The Viewer](https://docs.ohif.org/deployment/recipes/embedded-viewer.html)
|
||||
deployment recipe.
|
||||
|
||||
## Developing
|
||||
|
||||
### Requirements
|
||||
|
||||
- [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
|
||||
- [Node 10+](https://nodejs.org/en/)
|
||||
- Yarn Workspaces should be enabled on your machine:
|
||||
- `yarn config set workspaces-experimental true`
|
||||
|
||||
### Getting Started
|
||||
|
||||
1. [Fork this repository][how-to-fork]
|
||||
2. [Clone your forked repository][how-to-clone]
|
||||
- `git clone https://github.com/YOUR-USERNAME/Viewers.git`
|
||||
3. Navigate to the cloned project's directory
|
||||
4. Add this repo as a `remote` named `upstream`
|
||||
- `git remote add upstream https://github.com/OHIF/Viewers.git`
|
||||
5. `yarn install` to restore dependencies and link projects
|
||||
|
||||
#### To Develop
|
||||
|
||||
_From this repository's root directory:_
|
||||
|
||||
```bash
|
||||
# Enable Yarn Workspaces
|
||||
yarn config set workspaces-experimental true
|
||||
|
||||
# Restore dependencies
|
||||
yarn install
|
||||
|
||||
// Stands up local server to host Viewer.
|
||||
// Viewer connects to our public cloud PACS by default
|
||||
yarn start
|
||||
```
|
||||
|
||||
For more advanced local development scenarios, like using your own locally
|
||||
hosted PACS and test data,
|
||||
[check out our Essential: Getting Started](https://docs.ohif.org/essentials/getting-started.html)
|
||||
guide.
|
||||
## Commands
|
||||
|
||||
### E2E Tests
|
||||
These commands are available from the root directory. Each project directory
|
||||
also supports a number of commands that can be found in their respective
|
||||
`README.md` and `project.json` files.
|
||||
|
||||
Using [Cypress](https://www.cypress.io/) to create End-to-End tests and check whether the application flow is performing correctly, ensuring that the integrated components are working as expected.
|
||||
| Yarn Commands | Description |
|
||||
| ---------------------------- | ------------------------------------------------------------- |
|
||||
| **Develop** | |
|
||||
| `dev` or `start` | Default development experience for Viewer |
|
||||
| `dev:project <package-name>` | Replace with `core`, `ui`, `i18n`, `cornerstone`, `vtk`, etc. |
|
||||
| `test:unit` | Jest multi-project test runner; overall coverage |
|
||||
| **Deploy** | |
|
||||
| `build`\* | Builds production output for our PWA Viewer |
|
||||
| `build:package`\* | Builds production `commonjs` output for our Viewer |
|
||||
| `build:package-all`\* | Builds commonjs bundles for all projects |
|
||||
|
||||
#### Why Cypress?
|
||||
\* - For more information on our different builds, check out our [Deploy
|
||||
Docs][deployment-docs]
|
||||
|
||||
Cypress is a next generation front end testing tool built for the modern web.
|
||||
With Cypress is easy to set up, write, run and debug tests
|
||||
## Projects
|
||||
|
||||
It allow us to write different types of tests:
|
||||
The OHIF Medical Image Viewing Platform is maintained as a
|
||||
[`monorepo`][monorepo]. This means that this repository, instead of containing a
|
||||
single project, contains many projects. If you explore our project structure,
|
||||
you'll see the following:
|
||||
|
||||
- End-to-End tests
|
||||
- Integration tests
|
||||
- Unit tets
|
||||
|
||||
All tests must be in `./cypress/integration` folder.
|
||||
|
||||
Commands to run the tests:
|
||||
|
||||
```js
|
||||
// Open Cypress Dashboard that provides insight into what happened when your tests ran
|
||||
yarn run cy
|
||||
|
||||
// Run all tests using Electron browser headless
|
||||
yarn run cy:run
|
||||
|
||||
// Run all tests in CI mode
|
||||
yarn run cy:run:ci
|
||||
```bash
|
||||
.
|
||||
├── extensions #
|
||||
│ ├── _example # Skeleton of example extension
|
||||
│ ├── cornerstone # 2D images w/ Cornerstone.js
|
||||
│ ├── dicom-html # Structured Reports as HTML in viewport
|
||||
│ ├── dicom-microscopy # Whole slide microscopy viewing
|
||||
│ ├── dicom-pdf # View DICOM wrapped PDFs in viewport
|
||||
│ └── vtk # MPR and Volume support w/ VTK.js
|
||||
│
|
||||
├── platform #
|
||||
│ ├── core # Business Logic
|
||||
│ ├── i18n # Internationalization Support
|
||||
│ ├── ui # React component library
|
||||
│ └── viewer # Connects platform and extension projects
|
||||
│
|
||||
├── ... # misc. shared configuration
|
||||
├── lerna.json # MonoRepo (Lerna) settings
|
||||
├── package.json # Shared devDependencies and commands
|
||||
└── README.md # This file
|
||||
```
|
||||
|
||||
### Contributing
|
||||
Want to better understand why and how we've structured this repository? Read
|
||||
more about it in our [Architecture Documentation][ohif-architecture].
|
||||
|
||||
> Large portions of the Viewer's functionality are maintained in other
|
||||
> repositories. To get a better understanding of the Viewer's architecture and
|
||||
> "where things live", read
|
||||
> [our docs on the Viewer's architecture](https://docs.ohif.org/advanced/architecture.html#diagram)
|
||||
### Platform
|
||||
|
||||
It is notoriously difficult to setup multiple dependent repositories for
|
||||
end-to-end testing and development. That's why we recommend writing and running
|
||||
unit tests when adding and modifying features. This allows us to program in
|
||||
isolation without a complex setup, and has the added benefit of producing
|
||||
well-tested business logic.
|
||||
These projects comprise the
|
||||
|
||||
1. Clone this repository
|
||||
2. Navigate to the project directory, and `yarn install`
|
||||
3. To begin making changes, `yarn run dev`
|
||||
4. To commit changes, run `yarn run cm`
|
||||
| Name | Description | Links |
|
||||
| ------------------------------- | ---------------------------------------------------------------------------------------------------- | ----------------- |
|
||||
| [@ohif/core][platform-core] | Business logic and classes that model the data, services, and extensions that are framework agnostic | [NPM][core-npm] |
|
||||
| [@ohif/i18n][platform-i18n] | Language files and small API for wrapping component/ui text for translations | [NPM][i18n-npm] |
|
||||
| [@ohif/viewer][platform-viewer] | The OHIF Viewer. Where we consume and configure all platform library's and extensions | [NPM][viewer-npm] |
|
||||
| [@ohif/ui][platform-ui] | Reusable React components we consume and compose to build our Viewer's UI | [NPM][ui-npm] |
|
||||
|
||||
When creating tests, place the test file "next to" the file you're testing.
|
||||
[For example](https://github.com/OHIF/Viewers/blob/master/src/utils/index.test.js):
|
||||
### Extensions
|
||||
|
||||
```js
|
||||
// File
|
||||
index.js
|
||||
This is a list of Extensions maintained by the OHIF Core team. It's possible to
|
||||
customize and configure these extensions, and you can even create your own. You
|
||||
can [read more about extensions here][ohif-extensions].
|
||||
|
||||
// Test for file
|
||||
index.test.js
|
||||
```
|
||||
|
||||
As you add and modify code, `jest` will watch for uncommitted changes and run
|
||||
your tests, reporting the results to your terminal. Make a pull request with
|
||||
your changes to `master`, and a core team member will review your work. If you
|
||||
have any questions, please don't hesitate to reach out via a GitHub issue.
|
||||
|
||||
## Issues
|
||||
|
||||
_Looking to contribute? Look for the [Good First Issue][good-first-issue]
|
||||
label._
|
||||
|
||||
### 🐛 Bugs
|
||||
|
||||
Please file an issue for bugs, missing documentation, or unexpected behavior.
|
||||
|
||||
[**See Bugs**][bugs]
|
||||
|
||||
### 💡 Feature Requests
|
||||
|
||||
Please file an issue to suggest new features. Vote on feature requests by adding
|
||||
a 👍. This helps maintainers prioritize what to work on.
|
||||
|
||||
[**See Feature Requests**][requests-feature]
|
||||
|
||||
### ❓ Questions
|
||||
|
||||
For questions related to using the library, please visit our support community,
|
||||
or file an issue on GitHub.
|
||||
|
||||
[Google Group][google-group]
|
||||
|
||||
## Roadmap
|
||||
|
||||
If you want to know what's planned for the very near future,
|
||||
[check out our roadmap](https://ohif.canny.io/). The best way to influence when
|
||||
and what is worked on is to contribute to the conversation by creating GitHub
|
||||
issues, and contributing code through pull requests. OHIF's high level
|
||||
priorities for the near future are:
|
||||
|
||||
- Feature parity with version 1
|
||||
- Extension and configuration improvements with key integration partners
|
||||
- Continued Developer Experience Improvements
|
||||
- Segmentation Tools, and improved VTK.js support
|
||||
|
||||
More granular information will make it's way to the backlog as these items
|
||||
become scoped for development by core maintainers.
|
||||
|
||||
> Don't hesitate to ask questions, propose features, or create pull requests.
|
||||
> We're here, we're listening, and we're ready to build the best open source
|
||||
> medical imaging viewer on the web.
|
||||
|
||||
#### Roadmap Generously Powered by Canny.io
|
||||
|
||||
<a href="https://ohif.canny.io/">
|
||||
<img height="30" src="docs/latest/assets/img/canny-full.png" />
|
||||
</a>
|
||||
|
||||
## Contributors
|
||||
|
||||
Thanks goes to these wonderful people
|
||||
([emoji key](https://allcontributors.org/docs/en/emoji-key)):
|
||||
|
||||
<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section -->
|
||||
<!-- prettier-ignore -->
|
||||
<table>
|
||||
<tr>
|
||||
<td align="center"><a href="https://github.com/swederik"><img src="https://avatars3.githubusercontent.com/u/607793?v=4" width="100px;" alt="Erik Ziegler"/><br /><sub><b>Erik Ziegler</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=swederik" title="Code">💻</a> <a href="#infra-swederik" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
|
||||
<td align="center"><a href="https://github.com/evren217"><img src="https://avatars1.githubusercontent.com/u/4920551?v=4" width="100px;" alt="Evren Ozkan"/><br /><sub><b>Evren Ozkan</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=evren217" title="Code">💻</a></td>
|
||||
<td align="center"><a href="https://github.com/galelis"><img src="https://avatars3.githubusercontent.com/u/2378326?v=4" width="100px;" alt="Gustavo André Lelis"/><br /><sub><b>Gustavo André Lelis</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=galelis" title="Code">💻</a></td>
|
||||
<td align="center"><a href="http://dannyrb.com/"><img src="https://avatars1.githubusercontent.com/u/5797588?v=4" width="100px;" alt="Danny Brown"/><br /><sub><b>Danny Brown</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=dannyrb" title="Code">💻</a> <a href="#infra-dannyrb" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
|
||||
<td align="center"><a href="https://github.com/all-contributors/all-contributors-bot"><img src="https://avatars3.githubusercontent.com/u/46843839?v=4" width="100px;" alt="allcontributors[bot]"/><br /><sub><b>allcontributors[bot]</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=allcontributors" title="Documentation">📖</a></td>
|
||||
<td align="center"><a href="https://www.linkedin.com/in/siliconvalleynextgeneration/"><img src="https://avatars0.githubusercontent.com/u/1230575?v=4" width="100px;" alt="Esref Durna"/><br /><sub><b>Esref Durna</b></sub></a><br /><a href="#question-EsrefDurna" title="Answering Questions">💬</a></td>
|
||||
<td align="center"><a href="https://github.com/diego0020"><img src="https://avatars3.githubusercontent.com/u/7297450?v=4" width="100px;" alt="diego0020"/><br /><sub><b>diego0020</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=diego0020" title="Code">💻</a></td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td align="center"><a href="https://github.com/dlwire"><img src="https://avatars3.githubusercontent.com/u/1167291?v=4" width="100px;" alt="David Wire"/><br /><sub><b>David Wire</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=dlwire" title="Code">💻</a></td>
|
||||
<td align="center"><a href="https://github.com/jfmedeiros1820"><img src="https://avatars1.githubusercontent.com/u/2211708?v=4" width="100px;" alt="João Felipe de Medeiros Moreira"/><br /><sub><b>João Felipe de Medeiros Moreira</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=jfmedeiros1820" title="Tests">⚠️</a></td>
|
||||
<td align="center"><a href="http://egor.lezhn.in"><img src="https://avatars0.githubusercontent.com/u/878990?v=4" width="100px;" alt="Egor Lezhnin"/><br /><sub><b>Egor Lezhnin</b></sub></a><br /><a href="https://github.com/OHIF/Viewers/commits?author=pavertomato" title="Code">💻</a></td>
|
||||
</tr>
|
||||
</table>
|
||||
|
||||
<!-- ALL-CONTRIBUTORS-LIST:END -->
|
||||
|
||||
This project follows the
|
||||
[all-contributors](https://github.com/all-contributors/all-contributors)
|
||||
specification. Contributions of any kind welcome!
|
||||
|
||||
## License
|
||||
|
||||
MIT © [OHIF](https://github.com/OHIF)
|
||||
| Name | Description | Links |
|
||||
| -------------------------------------------------------------- | ------------------------------------------------------- | ---------------------- |
|
||||
| [@ohif/extension-cornestone][extension-cornerstone] | 2D image viewing, annotation, and segementation tools | [NPM][cornerstone-npm] |
|
||||
| [@ohif/extension-dicom-html][extension-dicom-html] | Support for viewing DICOM SR as rendered HTML | [NPM][html-npm] |
|
||||
| [@ohif/extension-dicom-microscopy][extension-dicom-microscopy] | Whole slide microscopy viewing | [NPM][microscopy-npm] |
|
||||
| [@ohif/extension-dicom-pdf][extension-dicom-pdf] | View DICOM wrapped PDFs in a viewport | [NPM][pdf-npm] |
|
||||
| [@ohif/extension-vtk][extension-vtk] | Volume rendering, reconstruction, and 3D visualizations | [NPM][vtk-npm] |
|
||||
|
||||
## Acknowledgments
|
||||
|
||||
@@ -269,42 +259,71 @@ Cancer Institute, Informatics Technology for Cancer Research (ITCR) program,
|
||||
under a
|
||||
[grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460)](https://projectreporter.nih.gov/project_info_description.cfm?aid=8971104).
|
||||
|
||||
## License
|
||||
|
||||
MIT © [OHIF](https://github.com/OHIF)
|
||||
|
||||
<!--
|
||||
Links:
|
||||
-->
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- ROW -->
|
||||
<!-- Badges -->
|
||||
[lerna-image]: https://img.shields.io/badge/maintained%20with-lerna-cc00ff.svg
|
||||
[lerna-url]: https://lerna.js.org/
|
||||
[netlify-image]: https://api.netlify.com/api/v1/badges/a5d369ab-18a6-41c3-bcde-83805205ac7f/deploy-status
|
||||
[netlify-url]: https://app.netlify.com/sites/ohif/deploys
|
||||
[all-contributors-image]: https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat-square
|
||||
[contributing-url]: https://github.com/OHIF/Viewers/blob/react/CONTRIBUTING.md
|
||||
[circleci-image]: https://circleci.com/gh/OHIF/Viewers.svg?style=svg
|
||||
[circleci-url]: https://circleci.com/gh/OHIF/Viewers
|
||||
[codecov-image]: https://codecov.io/gh/OHIF/Viewers/branch/react/graph/badge.svg
|
||||
[codecov-url]: https://codecov.io/gh/OHIF/Viewers/branch/react
|
||||
[codecov-image]: https://codecov.io/gh/OHIF/Viewers/branch/master/graph/badge.svg
|
||||
[codecov-url]: https://codecov.io/gh/OHIF/Viewers/branch/master
|
||||
[prettier-image]: https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square
|
||||
[prettier-url]: https://github.com/prettier/prettier
|
||||
[semantic-image]: https://img.shields.io/badge/%20%20%F0%9F%93%A6%F0%9F%9A%80-semantic--release-e10079.svg
|
||||
[semantic-url]: https://github.com/semantic-release/semantic-release
|
||||
<!-- ROW -->
|
||||
[npm-url]: https://npmjs.org/package/ohif-viewer
|
||||
[npm-downloads-image]: https://img.shields.io/npm/dm/ohif-viewer.svg?style=flat-square
|
||||
[npm-version-image]: https://img.shields.io/npm/v/ohif-viewer.svg?style=flat-square
|
||||
[npm-url]: https://npmjs.org/package/@ohif/viewer
|
||||
[npm-downloads-image]: https://img.shields.io/npm/dm/@ohif/viewer.svg?style=flat-square
|
||||
[npm-version-image]: https://img.shields.io/npm/v/@ohif/viewer.svg?style=flat-square
|
||||
[docker-pulls-img]: https://img.shields.io/docker/pulls/ohif/viewer.svg?style=flat-square
|
||||
[docker-image-url]: https://hub.docker.com/r/ohif/viewer
|
||||
[license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
|
||||
[license-url]: LICENSE
|
||||
<!-- DOCS -->
|
||||
[percy-image]: https://percy.io/static/images/percy-badge.svg
|
||||
[percy-url]: https://percy.io/Open-Health-Imaging-Foundation/OHIF-Viewer
|
||||
<!-- Links -->
|
||||
[monorepo]: https://en.wikipedia.org/wiki/Monorepo
|
||||
[how-to-fork]: https://help.github.com/en/articles/fork-a-repo
|
||||
[how-to-clone]: https://help.github.com/en/articles/fork-a-repo#step-2-create-a-local-clone-of-your-fork
|
||||
[ohif-architecture]: https://docs.ohif.org/architecture/index.html
|
||||
[ohif-extensions]: https://docs.ohif.org/architecture/index.html
|
||||
[deployment-docs]: https://docs.ohif.org/deployment/
|
||||
[react-url]: https://reactjs.org/
|
||||
[pwa-url]: https://developers.google.com/web/progressive-web-apps/
|
||||
[ohif-viewer-url]: https://www.npmjs.com/package/ohif-viewer
|
||||
[configuration-url]: https://docs.ohif.org/essentials/configuration.html
|
||||
[extensions-url]: https://docs.ohif.org/advanced/extensions.html
|
||||
<!-- Misc. -->
|
||||
[react-viewer]: https://github.com/OHIF/Viewers/tree/react
|
||||
<!-- Issue Boilerplate -->
|
||||
[bugs]: https://github.com/OHIF/Viewers/labels/bug
|
||||
[requests-feature]: https://github.com/OHIF/Viewers/labels/enhancement
|
||||
[good-first-issue]: https://github.com/OHIF/Viewers/labels/good%20first%20issue
|
||||
[google-group]: https://groups.google.com/forum/#!forum/cornerstone-platform
|
||||
|
||||
[ohif-viewer-url]: https://www.npmjs.com/package/@ohif/viewer
|
||||
[configuration-url]: https://docs.ohif.org/configuring/
|
||||
[extensions-url]: https://docs.ohif.org/extensions/
|
||||
<!-- Platform -->
|
||||
[platform-core]: platform/core/README.md
|
||||
[core-npm]: https://www.npmjs.com/package/@ohif/core
|
||||
[platform-i18n]: platform/i18n/README.md
|
||||
[i18n-npm]: https://www.npmjs.com/package/@ohif/i18n
|
||||
[platform-ui]: platform/ui/README.md
|
||||
[ui-npm]: https://www.npmjs.com/package/@ohif/ui
|
||||
[platform-viewer]: platform/viewer/README.md
|
||||
[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
|
||||
<!-- Extensions -->
|
||||
[extension-cornerstone]: extensions/cornerstone/README.md
|
||||
[cornerstone-npm]: https://www.npmjs.com/package/@ohif/extension-cornerstone
|
||||
[extension-dicom-html]: extensions/dicom-html/README.md
|
||||
[html-npm]: https://www.npmjs.com/package/@ohif/extension-dicom-html
|
||||
[extension-dicom-microscopy]: extensions/dicom-microscopy/README.md
|
||||
[microscopy-npm]: https://www.npmjs.com/package/@ohif/extension-dicom-microscopy
|
||||
[extension-dicom-pdf]: extensions/dicom-pdf/README.md
|
||||
[pdf-npm]: https://www.npmjs.com/package/@ohif/extension-dicom-pdf
|
||||
[extension-vtk]: extensions/vtk/README.md
|
||||
[vtk-npm]: https://www.npmjs.com/package/@ohif/extension-vtk
|
||||
<!-- prettier-ignore-end -->
|
||||
|
||||
[](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_large)
|
||||
@@ -0,0 +1,8 @@
|
||||
/* Used by webpack, babel and eslint */
|
||||
|
||||
const path = require('path');
|
||||
|
||||
module.exports = {
|
||||
'@codinsky/parse-js': path.resolve(__dirname, 'packages/parse/src'),
|
||||
'@codinsky/curate': path.resolve(__dirname, 'packages/curate/src'),
|
||||
};
|
||||
@@ -0,0 +1,63 @@
|
||||
const aliases = require('./aliases.config');
|
||||
const path = require('path');
|
||||
|
||||
// https://babeljs.io/docs/en/options#babelrcroots
|
||||
module.exports = {
|
||||
babelrcRoots: ['./platform/*', './extensions/*'],
|
||||
plugins: ['inline-react-svg', '@babel/plugin-proposal-class-properties'],
|
||||
env: {
|
||||
test: {
|
||||
presets: [
|
||||
[
|
||||
// TODO: https://babeljs.io/blog/2019/03/19/7.4.0#migration-from-core-js-2
|
||||
'@babel/preset-env',
|
||||
{
|
||||
modules: 'commonjs',
|
||||
debug: false,
|
||||
},
|
||||
],
|
||||
'@babel/preset-react',
|
||||
],
|
||||
plugins: [
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/plugin-transform-runtime',
|
||||
],
|
||||
},
|
||||
production: {
|
||||
presets: [
|
||||
// WebPack handles ES6 --> Target Syntax
|
||||
['@babel/preset-env', { modules: false }],
|
||||
'@babel/preset-react',
|
||||
],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
development: {
|
||||
presets: [
|
||||
// WebPack handles ES6 --> Target Syntax
|
||||
['@babel/preset-env', { modules: false }],
|
||||
'@babel/preset-react',
|
||||
],
|
||||
plugins: ['react-hot-loader/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
};
|
||||
|
||||
// TODO: Plugins; Aliases
|
||||
// We don't currently use aliases, but this is a nice snippet that would help
|
||||
// [
|
||||
// 'module-resolver',
|
||||
// {
|
||||
// // https://github.com/tleunen/babel-plugin-module-resolver/issues/338
|
||||
// // There seem to be a bug with module-resolver with a mono-repo setup:
|
||||
// // It doesn't resolve paths correctly when using root/alias combo, so we
|
||||
// // use this function instead.
|
||||
// resolvePath(sourcePath, currentFile, opts) {
|
||||
// // This will return undefined if aliases has no key for the sourcePath,
|
||||
// // in which case module-resolver will fallback on its default behaviour.
|
||||
// return aliases[sourcePath];
|
||||
// },
|
||||
// },
|
||||
// ],
|
||||
@@ -6,6 +6,7 @@ cd "$(dirname "$0")"
|
||||
|
||||
yarn -v
|
||||
node -v
|
||||
|
||||
echo 'Installing Gitbook CLI'
|
||||
yarn global add gitbook-cli
|
||||
|
||||
@@ -13,7 +14,7 @@ echo 'Running Gitbook installation'
|
||||
|
||||
# Generate all version's GitBook output
|
||||
# For each directory in /docs ...
|
||||
cd ./docs/
|
||||
cd ./../docs/
|
||||
for D in *; do
|
||||
if [ -d "${D}" ]; then
|
||||
|
||||
@@ -49,9 +50,15 @@ for D in *; do
|
||||
fi
|
||||
fi
|
||||
done
|
||||
|
||||
# Back to repo root
|
||||
cd ..
|
||||
|
||||
# Build and copy the StandaloneViewer into the static directory
|
||||
mkdir ./docs/latest/_book/demo/
|
||||
yarn install
|
||||
yarn build:web:ci
|
||||
echo "Done generating documentation output"
|
||||
echo 'PUBLISHING'
|
||||
|
||||
./node_modules/.bin/gh-pages \
|
||||
--silent \
|
||||
--repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
|
||||
--message 'Autogenerated Message: [ci skip]' \
|
||||
--dist docs/latest/_book
|
||||
@@ -1,5 +0,0 @@
|
||||
{
|
||||
"baseUrl": "http://localhost:5000",
|
||||
"video": true,
|
||||
"projectId": "4oe38f"
|
||||
}
|
||||
@@ -1,16 +0,0 @@
|
||||
describe('OHIFStandaloneViewer', () => {
|
||||
beforeEach(() => {
|
||||
cy.visit('/');
|
||||
});
|
||||
|
||||
it('loads route with at least 2 rows', () => {
|
||||
cy.get('#studyListData tr')
|
||||
.its('length')
|
||||
.should('be.gt', 2);
|
||||
});
|
||||
|
||||
it('first 2 rows has values', () => {
|
||||
cy.get('#studyListData > :nth-child(1) > .patientId').should('be.visible');
|
||||
cy.get('#studyListData > :nth-child(2) > .patientId').should('be.visible');
|
||||
});
|
||||
});
|
||||
@@ -1,22 +0,0 @@
|
||||
describe('ViewerRouting', () => {
|
||||
beforeEach(() => {
|
||||
cy.visit('/');
|
||||
cy.contains('Study List');
|
||||
cy.get('#studyListData > :nth-child(1) > .patientId').click();
|
||||
});
|
||||
|
||||
it('thumbnails list has more than 2 items', () => {
|
||||
cy.get('.scrollable-study-thumbnails div.ThumbnailEntryContainer')
|
||||
.its('length')
|
||||
.should('be.gte', 2);
|
||||
});
|
||||
|
||||
it('loads route with at least 2 thumbnails', () => {
|
||||
cy.get(
|
||||
':nth-child(1) > .ThumbnailEntry > .p-x-1 > .ImageThumbnail > .image-thumbnail-canvas > canvas'
|
||||
).should('be.visible');
|
||||
cy.get(
|
||||
':nth-child(2) > .ThumbnailEntry > .p-x-1 > .ImageThumbnail > .image-thumbnail-canvas > canvas'
|
||||
).should('be.visible');
|
||||
});
|
||||
});
|
||||
@@ -1,25 +0,0 @@
|
||||
// ***********************************************
|
||||
// This example commands.js shows you how to
|
||||
// create various custom commands and overwrite
|
||||
// existing commands.
|
||||
//
|
||||
// For more comprehensive examples of custom
|
||||
// commands please read more here:
|
||||
// https://on.cypress.io/custom-commands
|
||||
// ***********************************************
|
||||
//
|
||||
//
|
||||
// -- This is a parent command --
|
||||
// Cypress.Commands.add("login", (email, password) => { ... })
|
||||
//
|
||||
//
|
||||
// -- This is a child command --
|
||||
// Cypress.Commands.add("drag", { prevSubject: 'element'}, (subject, options) => { ... })
|
||||
//
|
||||
//
|
||||
// -- This is a dual command --
|
||||
// Cypress.Commands.add("dismiss", { prevSubject: 'optional'}, (subject, options) => { ... })
|
||||
//
|
||||
//
|
||||
// -- This is will overwrite an existing command --
|
||||
// Cypress.Commands.overwrite("visit", (originalFn, url, options) => { ... })
|
||||
@@ -1,20 +0,0 @@
|
||||
// ***********************************************************
|
||||
// This example support/index.js is processed and
|
||||
// loaded automatically before your test files.
|
||||
//
|
||||
// This is a great place to put global configuration and
|
||||
// behavior that modifies Cypress.
|
||||
//
|
||||
// You can change the location of this file or turn off
|
||||
// automatically serving support files with the
|
||||
// 'supportFile' configuration option.
|
||||
//
|
||||
// You can read more here:
|
||||
// https://on.cypress.io/configuration
|
||||
// ***********************************************************
|
||||
|
||||
// Import commands.js using ES2015 syntax:
|
||||
import './commands';
|
||||
|
||||
// Alternatively you can use CommonJS syntax:
|
||||
// require('./commands')
|
||||
@@ -1,56 +0,0 @@
|
||||
<!DOCTYPE html>
|
||||
<html lang="en">
|
||||
|
||||
<head>
|
||||
<meta charset="utf-8" />
|
||||
|
||||
<meta name="description" content="Open Health Imaging Foundation DICOM Viewer" />
|
||||
<meta name="viewport"
|
||||
content="width=device-width,initial-scale=1.0,minimum-scale=1,maximum-scale=1,user-scalable=no" />
|
||||
<meta name="theme-color" content="#000000" />
|
||||
<meta http-equiv="cleartype" content="on" />
|
||||
<meta name="MobileOptimized" content="320" />
|
||||
<meta name="HandheldFriendly" content="True" />
|
||||
<meta name="apple-mobile-web-app-capable" content="yes" />
|
||||
|
||||
<!-- Latest compiled and minified CSS -->
|
||||
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css"
|
||||
integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous" />
|
||||
|
||||
<title>OHIF Standalone Viewer</title>
|
||||
</head>
|
||||
|
||||
<body>
|
||||
<noscript> You need to enable JavaScript to run this app. </noscript>
|
||||
|
||||
<div id="root"></div>
|
||||
|
||||
<!-- Load React. -->
|
||||
<script crossorigin src="https://unpkg.com/react@16/umd/react.production.min.js"></script>
|
||||
<script crossorigin src="https://unpkg.com/react-dom@16/umd/react-dom.production.min.js"></script>
|
||||
|
||||
<script src="/index.umd.js" crossorigin></script>
|
||||
<script>
|
||||
window.config = {
|
||||
// default: '/'
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
}
|
||||
|
||||
window.OHIFStandaloneViewer.installViewer(window.config);
|
||||
</script>
|
||||
</body>
|
||||
|
||||
</html>
|
||||
@@ -0,0 +1,3 @@
|
||||
# Netlify redirects
|
||||
# SPA rules for our docs
|
||||
/* /index.html 200
|
||||
@@ -1,7 +1,7 @@
|
||||
<div class='row'>
|
||||
<div class='column' style='text-align: right; padding: 0 20px'>
|
||||
<strong>Looking for a Deploy Preview?</strong>
|
||||
<a onclick="function redirect() { window.location.href='/demo/'; } redirect();">Deploy Preview for Viewer</a>
|
||||
<strong>Looking for a Live Demo?</strong>
|
||||
<a href="http://viewer.ohif.org/">Preview The OHIF Viewer</a>
|
||||
</div>
|
||||
<div class='column' style='text-align: left; padding: 0 20px'>
|
||||
<a href="https://www.netlify.com">
|
||||
@@ -33,14 +33,14 @@ yourself unable to extend the viewer for your purposes, please reach out via our
|
||||
[GitHub issues][gh-issues]. We are actively seeking feedback on ways to improve
|
||||
our integration and extension points.
|
||||
|
||||
## Where to Next?
|
||||
## Where to next?
|
||||
|
||||
Check out these helpful links:
|
||||
|
||||
- Ready to dive into some code? Check out our
|
||||
[Getting Started Guide](./essentials/getting-started.md).
|
||||
[Getting Started Guide](./development/getting-started.md).
|
||||
- We're an active, vibrant community.
|
||||
[Learn how you can be more involved.](./contributing.md)
|
||||
[Learn how you can be more involved.](./development/contributing.md)
|
||||
- Feeling lost? Read our [help page](./help.md).
|
||||
|
||||
<!--
|
||||
|
||||
@@ -1,31 +1,41 @@
|
||||
# OHIF Viewers
|
||||
|
||||
- Essentials
|
||||
- [Getting Started](essentials/getting-started.md)
|
||||
- [Installation](essentials/installation.md)
|
||||
- [Data Source](essentials/data-source.md)
|
||||
- [Our Process](our-process.md)
|
||||
- [Quick Start](quick-start.md)
|
||||
- Development
|
||||
- [Getting Started](development/getting-started.md)
|
||||
- [Contributing](development/contributing.md)
|
||||
- [Continuous Integration](development/continous-integration.md)
|
||||
- [Configuring](configuring/index.md)
|
||||
- [Data Source](configuring/data-source.md)
|
||||
- [Configuration](essentials/configuration.md)
|
||||
- [Themeing](essentials/themeing.md)
|
||||
- [Translating](essentials/translating.md)
|
||||
- [Troubleshooting](essentials/troubleshooting.md)
|
||||
- [Scope of Project](essentials/scope-of-project.md)
|
||||
|
||||
---
|
||||
|
||||
- [Advanced](advanced/index.md)
|
||||
- [Architecture](advanced/architecture.md)
|
||||
- [Overview](advanced/architecture.md#overview)
|
||||
- [Business Logic](advanced/architecture.md#business-logic)
|
||||
- [Component Library](advanced/architecture.md#react-component-library)
|
||||
- [Extensions](advanced/architecture.md#misc-extensions)
|
||||
- [Diagram](advanced/architecture.md#diagram)
|
||||
- [Common Questions](advanced/architecture.md#common-questions)
|
||||
- [Extensions](advanced/extensions.md)
|
||||
- [Overview](advanced/extensions.md#overview)
|
||||
- [Modules](advanced/extensions.md#modules)
|
||||
- [Registering](advanced/extensions.md#registering-extensions)
|
||||
- [OHIF Maintained](advanced/extensions.md#ohif-maintained-extensions)
|
||||
- [Custom Tools](advanced/custom-tools.md)
|
||||
- [Architecture](architecture/index.md)
|
||||
- [Viewer](viewer/index.md)
|
||||
- [Configuration](viewer/configuration.md)
|
||||
- [Themeing](viewer/themeing.md)
|
||||
- [Internationalization](viewer/internationalization.md)
|
||||
- [Extensions](extensions/index.md)
|
||||
- [Registering](extensions/index.md#registering-an-extension)
|
||||
- [Lifecycle Hooks](extensions/index.md#lifecycle-hooks)
|
||||
- [preRegistration](extensions/lifecycle/pre-registration.md)
|
||||
- [Modules](extensions/index.md#modules)
|
||||
- [Commands](extensions/modules/commands.md)
|
||||
- [Panel](extensions/modules/panel.md)
|
||||
- [SOP Class Handler](extensions/modules/sop-class-handler.md)
|
||||
- [Toolbar](extensions/modules/toolbar.md)
|
||||
- [Viewport](extensions/modules/viewport.md)
|
||||
- [Contexts](extension/index.md#contexts)
|
||||
- [OHIF Maintained](extension/index.md#maintained-extensions)
|
||||
- [Services](services/index.md)
|
||||
- [Default](services/default/index.md)
|
||||
- [Measurements](services/default/measurements.md)
|
||||
- [UI](services/ui/index.md)
|
||||
- [Dialog Service](services/ui/ui-dialog-service.md)
|
||||
- [Modal Service](services/ui/ui-modal-service.md)
|
||||
- [Notification Service](services/ui/ui-notification-service.md)
|
||||
|
||||
---
|
||||
|
||||
@@ -45,7 +55,8 @@
|
||||
|
||||
---
|
||||
|
||||
- [Contributing](contributing.md)
|
||||
- [FAQ](frequently-asked-questions.md)
|
||||
- [Roadmap](roadmap.md)
|
||||
- [FAQ](faq/index.md)
|
||||
- [Scope of Project](faq/scope-of-project.md)
|
||||
- [Browser Support](faq/browser-support.md)
|
||||
- [PWA vs Packaged](faq/pwa-vs-packaged.md)
|
||||
- [Help](help.md)
|
||||
@@ -1,100 +0,0 @@
|
||||
# Architecture
|
||||
|
||||
Looking to extend your instance of the OHIF Viewer? Want learn how to reuse _a
|
||||
portion_ of the Viewer in your own application? Or maybe you want to get
|
||||
involved and draft or suggest a new feature? Regardless, you're in the right
|
||||
place!
|
||||
|
||||
The OHIF Viewer aims to be decoupled, configurable, and extensible; while this
|
||||
allows our code to be used in more ways, it also increases complexity. Below, we
|
||||
aim to demistify that complexity by providing insight into how our Viewer is
|
||||
architected, and the role each of it's dependent libraries plays.
|
||||
|
||||
## Overview
|
||||
|
||||
The [`OHIF/Viewers`](https://github.com/OHIF/Viewers/tree/react) repository
|
||||
contains the source code for the OHIF Medical Imaging Viewer. It is effectively
|
||||
a React
|
||||
[progressive web app](https://developers.google.com/web/progressive-web-apps/)
|
||||
(PWA) that combines the business logic housed in
|
||||
[`OHIF/ohif-core`](https://github.com/OHIF/ohif-core) and the components in our
|
||||
React Component library
|
||||
[`OHIF/react-viewerbase`](https://github.com/OHIF/react-viewerbase). It provides
|
||||
customization for common use cases through
|
||||
[configuration](../essentials/configuration.md) and for adding functionality via
|
||||
[extensions](./extensions.md).
|
||||
|
||||
### Business Logic
|
||||
|
||||
Our goal is to maintain the majority of our business logic in
|
||||
[`OHIF/ohif-core`](https://github.com/OHIF/ohif-core). `ohif-core` offers
|
||||
pre-packaged solutions for features common to Web-based medical imaging viewers.
|
||||
For example:
|
||||
|
||||
- Hotkeys
|
||||
- DICOM Web
|
||||
- Hanging Protocols
|
||||
- Managing a study's measurements
|
||||
- Managing a study's DICOM metadata
|
||||
- A flexible pattern for extensions
|
||||
- [And many others](https://github.com/OHIF/ohif-core/blob/master/src/index.js#L49-L69)
|
||||
|
||||
It does this while remaining decoupled from any particular view library or
|
||||
rendering logic. While we use it to power our React Viewer, it can be used with
|
||||
Vue, React, Vanilla JS, or any number of other frameworks.
|
||||
|
||||
### React Component Library
|
||||
|
||||
[`OHIF/react-viewerbase`](https://github.com/OHIF/react-viewerbase) is a React
|
||||
Component library that contains the reusable components that power the OHIF
|
||||
Viewer. It allows us to build, compose, and test components in isolation; easing
|
||||
the development process by reducing the need to stand-up a local PACS with test
|
||||
case data.
|
||||
|
||||
[Check out our component library!](https://react.ohif.org/)
|
||||
|
||||
### Misc. Extensions
|
||||
|
||||
Want to add custom logic or UI Components to the OHIF Viewer, but don't want to
|
||||
maintain a fork? We expose common integration points via
|
||||
[extensions](./extensions.md) to make that possible. For a list of extensions
|
||||
maintained by OHIF,
|
||||
[check out this helpful table](./extensions.html#ohif-maintained-extensions).
|
||||
|
||||
If you find yourself thinking "I wish the Viewer could do X", and you can't
|
||||
accomplish it with an extension today, create a GitHub issue! We're actively
|
||||
looking for ways to improve our extensibility ^\_^
|
||||
|
||||
[Click here to read more about extensions!](./extensions.md)
|
||||
|
||||
### Diagram
|
||||
|
||||
This diagram is a conceptual illustration of how the Viewer is architected.
|
||||
|
||||
0. (optional) `extensions` can be registered with `ohif-core`'s extension
|
||||
manager
|
||||
1. `ohif-core` provides bussiness logic and a way for `viewer` to access
|
||||
registered extensions
|
||||
1. The `viewer` composes and provides data to components from our component
|
||||
library (`react-viewerbase`)
|
||||
1. The `viewer` can be built and served as a stand-alone PWA, or as an
|
||||
embeddable package
|
||||
([`ohif-viewer`](https://www.npmjs.com/package/ohif-viewer))
|
||||
|
||||

|
||||
|
||||
<center><i>architecture diagram</i></center>
|
||||
|
||||
## Common Questions
|
||||
|
||||
> When should I use the packaged source `ohif-viewer` versus building a PWA from
|
||||
> the source?
|
||||
|
||||
...
|
||||
|
||||
> Can I create my own Viewer using Vue.js or Angular.js?
|
||||
|
||||
You can, but you will not be able to leverage as much of the existing code and
|
||||
components. `ohif-core` could still be used for business logic, and to provide a
|
||||
model for extensions. `react-viewerbase` would then become a guide for the
|
||||
components you would need to recreate.
|
||||
@@ -1,8 +0,0 @@
|
||||
# Tool Management
|
||||
|
||||
This is not yet exposed in an easy/convenient way. Most tools are currently
|
||||
added by creating new Viewport, Toolbar, and SOPInstanceHandler extension
|
||||
modules. You can read more about that approach in [extensions](./extensions.md).
|
||||
|
||||
In the near future, we intend to improve the extensibility of tools for existing
|
||||
Viewports (like our Cornerstone.js and VTK.js viewports).
|
||||
@@ -1,230 +0,0 @@
|
||||
# Extensions
|
||||
|
||||
Extensions add new functionality to the viewer by registering one or more
|
||||
modules. They go one step further than configuration in that they allow us to
|
||||
inject custom React components, so long as they adhere to the module's
|
||||
interface. This can be something as simple as adding a new button to the
|
||||
toolbar, or as complex as a new viewport capable of rendering volumes in 3D.
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Modules](#modules)
|
||||
- [Commands](#commands)
|
||||
- [Hotkeys](#hotkeys)
|
||||
- [Toolbar](#toolbar)
|
||||
- [Panel](#panel)
|
||||
- [Viewport](#viewport)
|
||||
- [SOP Class Handler](#sopclasshandler)
|
||||
|
||||
## Overview
|
||||
|
||||
At a glance, an extension is a javascript object that has an `id` property, and
|
||||
one or more "module" methods. You can find an abbreviated extension below, or
|
||||
[view the source][example-ext-src] of our example extension.
|
||||
|
||||
```js
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'example-extension',
|
||||
|
||||
/**
|
||||
* Registers one or more named commands scoped to a context. Commands are
|
||||
* the primary means for...
|
||||
*/
|
||||
getCommandsModule() {
|
||||
return {
|
||||
defaultContext: 'VIEWER'
|
||||
actions: { ... },
|
||||
definitions: { ... }
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* Allows you to provide toolbar definitions that will be merged with any
|
||||
* existing application toolbar configuration. Used to determine which
|
||||
* buttons should be visible when, their order, what happens when they're
|
||||
* clicked, etc.
|
||||
*/
|
||||
getToolbarModule() {
|
||||
return {
|
||||
definitions: [ ... ],
|
||||
defaultContext: 'ACTIVE_VIEWPORT::CORNERSTONE'
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Not yet implemented
|
||||
*/
|
||||
getPanelModule: () => null,
|
||||
|
||||
/**
|
||||
* Registers a ReactComponent that should be used to render data in a
|
||||
* Viewport. The first registered viewport is our "default viewport". If
|
||||
* more than one viewport is registered, we use `SopClassHandlers` to
|
||||
* determine which viewport should be used.
|
||||
*/
|
||||
getViewportModule: () => reactViewportComponent,
|
||||
|
||||
/** Provides a whitelist of SOPClassUIDs the viewport is capable of rendering.
|
||||
* Can modify default behavior for methods like `getDisplaySetFromSeries` */
|
||||
getSopClassHandler: () => {
|
||||
id: 'some-other-unique-id',
|
||||
sopClassUids: [ ... ],
|
||||
getDisplaySetFromSeries: (series, study, dicomWebClient, authorizationHeaders) => { ... }
|
||||
},
|
||||
}
|
||||
```
|
||||
|
||||
### Modules
|
||||
|
||||
There are a few different module types. Each module type allows us to extend the
|
||||
viewer in a different way, and provides a consistent API for us to do so. You
|
||||
can find a full list of the different types of modules
|
||||
[`in ohif-core`][module-types]. Information on each type of module, it's API,
|
||||
and how we determine when/where it should be used is included below.
|
||||
|
||||
> NOTE: Modifying the extensions/modules registered to the OHIF Viewer currently
|
||||
> requires us to import and pass extensions to the ExtensionManager in
|
||||
> `src/App.js`, then rebuild the application. Long-term, we intend to make it
|
||||
> possible to accomplish this without a build step.
|
||||
|
||||
#### Commands
|
||||
|
||||
The Commands Module allows us to register one or more commands scoped to
|
||||
specific contexts. Commands can be run by [hotkeys][#], [toolbar buttons][#],
|
||||
and any registered custom react component (like a [viewport][#] or [panel][#]).
|
||||
Here is a simple example commands module:
|
||||
|
||||
```js
|
||||
{
|
||||
getCommandsModule() {
|
||||
return {
|
||||
actions: {
|
||||
speak: ({ viewports, words }) => {
|
||||
console.log(viewports, words);
|
||||
},
|
||||
},
|
||||
definitions: {
|
||||
rotateViewportCW: {
|
||||
commandFn: actions.rotateViewport,
|
||||
storeContexts: ['viewports'],
|
||||
options: { rotation: 90 }
|
||||
},
|
||||
rotateViewportCCW: {
|
||||
commandFn: actions.rotateViewport,
|
||||
storeContexts: ['viewports'],
|
||||
options: { rotation: -90 },
|
||||
context: 'ACTIVE_VIEWER::CORNERSTONE'
|
||||
},
|
||||
},
|
||||
defaultContext: 'VIEWER'
|
||||
}
|
||||
}
|
||||
}
|
||||
```
|
||||
|
||||
#### Viewport
|
||||
|
||||
An extension can register a Viewport Module by providing a `getViewportModule()`
|
||||
method that returns a React Component. The React component will receive the
|
||||
following props:
|
||||
|
||||
```js
|
||||
children: PropTypes.arrayOf(PropTypes.element)
|
||||
studies: PropTypes.object,
|
||||
displaySet: PropTypes.object,
|
||||
viewportData: PropTypes.object, // { studies, displaySet }
|
||||
viewportIndex: PropTypes.number,
|
||||
children: PropTypes.node,
|
||||
customProps: PropTypes.object
|
||||
```
|
||||
|
||||
Viewport components are managed by the `LayoutManager`. Which Viewport component
|
||||
is used depends on:
|
||||
|
||||
- The Layout Configuration
|
||||
- Registered SopClassHandlers
|
||||
- The SopClassUID for visible/selected datasets
|
||||
|
||||

|
||||
|
||||
<center><i>An example of three Viewports</i></center>
|
||||
|
||||
For a complete example implementation,
|
||||
[check out the OHIFCornerstoneViewport](https://github.com/OHIF/Viewers/blob/react/extensions/ohif-cornerstone-extension/src/OHIFCornerstoneViewport.js).
|
||||
|
||||
#### Toolbar
|
||||
|
||||
An extension can register a Toolbar Module by providing a `getToolbarModule()`
|
||||
method that returns a React Component. The component does not receive any props.
|
||||
If you want to modify or react to state, you will need to connect to the redux
|
||||
store.
|
||||
|
||||

|
||||
|
||||
<center><i>A toolbar extension example</i></center>
|
||||
|
||||
Toolbar components are rendered in the `ToolbarRow` component.
|
||||
|
||||
For a complete example implementation,
|
||||
[check out the OHIFCornerstoneViewport's Toolbar Module](https://github.com/OHIF/Viewers/blob/react/extensions/ohif-cornerstone-extension/src/ToolbarModule.js).
|
||||
|
||||
#### SopClassHandler
|
||||
|
||||
...
|
||||
|
||||
#### Panel
|
||||
|
||||
> The panel module is not yet in use.
|
||||
|
||||
#### Hotkeys
|
||||
|
||||
...
|
||||
|
||||
### Registering Extensions
|
||||
|
||||
Extensions are registered for the application at startup. The
|
||||
`ExtensionManager`, exposed by `ohif-core`, registers a list of extensions with
|
||||
our application's store. Each module provided by the extension becomes available
|
||||
via `state.plugins.availablePlugins`, and consists of three parts: id, type
|
||||
([PLUGIN_TYPE](https://github.com/OHIF/ohif-core/blob/43c08a29eff3fb646a0e83a03a236ddd84f4a6e8/src/plugins.js#L1-L6)),
|
||||
and the return value of the module method.
|
||||
|
||||
In a future version, we will likely expose a way to provide the extensions you
|
||||
would like included at startup.
|
||||
|
||||
_app.js_
|
||||
|
||||
```js
|
||||
import { createStore, combineReducers } from 'redux';
|
||||
import OHIF from 'ohif-core';
|
||||
import OHIFCornerstoneExtension from 'ohif-cornerstone-extension';
|
||||
|
||||
const combined = combineReducers(OHIF.redux.reducers);
|
||||
const store = createStore(combined);
|
||||
const extensions = [new OHIFCornerstoneExtension()];
|
||||
|
||||
// Dispatches the `addPlugin` action to the store
|
||||
// Adding extension modules to `state.plugins.availablePlugins`
|
||||
ExtensionManager.registerExtensions(store, extensions);
|
||||
```
|
||||
|
||||
## OHIF Maintained Extensions
|
||||
|
||||
A small number of powerful extensions for popular use cases are maintained by
|
||||
OHIF. They're co-located in the
|
||||
[`OHIF/Viewers`](https://github.com/OHIF/Viewers/tree/react/) repository, in the
|
||||
top level [`extensions/`](https://github.com/OHIF/Viewers/tree/react/extensions)
|
||||
directory.
|
||||
|
||||
{% include "./_maintained-extensions-table.md" %}
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[example-ext-src]: https://github.com/OHIF/Viewers/blob/master/extensions/_ohif-example-extension/src/index.js)
|
||||
[module-types]: https://github.com/OHIF/ohif-core/blob/43c08a29eff3fb646a0e83a03a236ddd84f4a6e8/src/plugins.js#L1-L6
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,3 +0,0 @@
|
||||
# Advanced
|
||||
|
||||
Advanced topics go beyond basic configuration and deployment. Their goal is to provide insight into this project's architecture and guidance on leveraging extensions.
|
||||
@@ -0,0 +1,158 @@
|
||||
# Architecture
|
||||
|
||||
Looking to extend your instance of the OHIF Viewer? Want learn how to reuse _a
|
||||
portion_ of the Viewer in your own application? Or maybe you want to get
|
||||
involved and draft or suggest a new feature? Regardless, you're in the right
|
||||
place!
|
||||
|
||||
The OHIF Viewer aims to be decoupled, configurable, and extensible; while this
|
||||
allows our code to be used in more ways, it also increases complexity. Below, we
|
||||
aim to demistify that complexity by providing insight into how our Viewer is
|
||||
architected, and the role each of it's dependent libraries plays.
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Business Logic](#business-logic)
|
||||
- [Component Library](#react-component-library)
|
||||
- [Internationalization](#internationalization-i18n)
|
||||
- [Extensions & Configuration](#extensions--configuration)
|
||||
- [Common Questions](#common-questions)
|
||||
|
||||
## Overview
|
||||
|
||||
The [OHIF Medical Image Viewing Platform][viewers-project] is maintained as a
|
||||
[`monorepo`][monorepo]. This means that this repository, instead of containing a
|
||||
single project, contains many projects. If you explore our project structure,
|
||||
you'll see the following:
|
||||
|
||||
```bash
|
||||
.
|
||||
├── extensions
|
||||
│ ├── _example # Skeleton of example extension
|
||||
│ ├── cornerstone # 2D images w/ Cornerstone.js
|
||||
│ ├── dicom-html # Structured Reports as HTML in viewport
|
||||
│ ├── dicom-microscopy # Whole slide microscopy viewing
|
||||
│ ├── dicom-pdf # View DICOM wrapped PDFs in viewport
|
||||
│ └── vtk # MPR and Volume support w/ VTK.js
|
||||
│
|
||||
├── platform
|
||||
│ ├── core # Business Logic
|
||||
│ ├── i18n # Internationalization Support
|
||||
│ ├── ui # React component library
|
||||
│ └── viewer # Connects platform and extension projects
|
||||
│
|
||||
├── ... # misc. shared configuration
|
||||
├── lerna.json # MonoRepo (Lerna) settings
|
||||
├── package.json # Shared devDependencies and commands
|
||||
└── README.md
|
||||
```
|
||||
|
||||
The `platform` directory contains the business logic library, component library,
|
||||
and the application library that combines them to create a powerful medical
|
||||
imaging viewer.
|
||||
|
||||
The `extensions` directory contains many packages that can be registered with
|
||||
`@ohif/core`'s `ExtensionManager` to expand an application's supported features
|
||||
and functionality.
|
||||
|
||||

|
||||
|
||||
<center><i>architecture diagram</i></center>
|
||||
|
||||
This diagram is a conceptual illustration of how the Viewer is architected.
|
||||
|
||||
1. (optional) `extensions` can be registered with `@ohif/core`'s
|
||||
`ExtensionManager`
|
||||
2. `@ohif/core` provides bussiness logic and a way for `@ohif/viewer` to access
|
||||
registered extensions
|
||||
3. The `@ohif/viewer` composes and provides data to components from our
|
||||
component library (`@ohif/ui`)
|
||||
4. The `@ohif/viewer` can be built and served as a stand-alone PWA, or as an
|
||||
embeddable package ([`@ohif/viewer`][viewer-npm])
|
||||
|
||||
## Business Logic
|
||||
|
||||
The [`@ohif/core`][core-github] project offers pre-packaged solutions for
|
||||
features common to Web-based medical imaging viewers. For example:
|
||||
|
||||
- [Hotkeys](#)
|
||||
- DICOM Web requests
|
||||
- Hanging Protocols
|
||||
- [Managing a study's measurements](../services/default/measurements.md)
|
||||
- Managing a study's DICOM metadata
|
||||
- [A flexible pattern for extensions](../extensions/index.md)
|
||||
- And many others
|
||||
|
||||
It does this while remaining decoupled from any particular view library or
|
||||
rendering logic. While we use it to power our React Viewer, it can be used with
|
||||
Vue, React, Vanilla JS, or any number of other frameworks.
|
||||
|
||||
## React Component Library
|
||||
|
||||
[`@ohif/ui`][ui-github] is a React Component library that contains the reusable
|
||||
components that power the OHIF Viewer. It allows us to build, compose, and test
|
||||
components in isolation; easing the development process by reducing the need to
|
||||
stand-up a local PACS with test case data.
|
||||
|
||||
Extension authors can also use these same components when building their
|
||||
extension's UI; allowing for a consistent look and feel with the rest of the
|
||||
application.
|
||||
|
||||
[Check out our component library!](https://react.ohif.org/)
|
||||
|
||||
## Internationalization (i18n)
|
||||
|
||||
...
|
||||
|
||||
## Extensions & Configuration
|
||||
|
||||
While OHIF maintains several high value and commonly requested features in its
|
||||
own extensions, there are many instances where one may wish to further extend
|
||||
the viewer. Some common use cases include:
|
||||
|
||||
- Adding AI/ML tools and insights
|
||||
- Custom workflows for guided diagnosis
|
||||
- Collecting specific annotations for training data or reports
|
||||
- Authentication and granular permissions
|
||||
- Teleconsultation workflow, image comments, and tracking
|
||||
- Adding surgical templating tools and reports
|
||||
- and many others
|
||||
|
||||
We expose common integration points via [extensions](../extensions/index.md) to
|
||||
make this possible. The viewer and many of our own extensions also offer
|
||||
[configuration][configuration]. For a list of extensions maintained by OHIF,
|
||||
[check out this helpful table](../extensions/index.mdl#maintained-extensions).
|
||||
|
||||
If you find yourself thinking "I wish the Viewer could do X", and you can't
|
||||
accomplish it with an extension today, create a GitHub issue! We're actively
|
||||
looking for ways to improve our extensibility ^\_^
|
||||
|
||||
[Click here to read more about extensions!](../extensions/index.md)
|
||||
|
||||
## Common Questions
|
||||
|
||||
> When should I use the packaged source `@ohif/viewer` versus building a PWA
|
||||
> from the source?
|
||||
|
||||
...
|
||||
|
||||
> Can I create my own Viewer using Vue.js or Angular.js?
|
||||
|
||||
You can, but you will not be able to leverage as much of the existing code and
|
||||
components. `@ohif/core` could still be used for business logic, and to provide
|
||||
a model for extensions. `@ohif/ui` would then become a guide for the components
|
||||
you would need to recreate.
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[monorepo]: #
|
||||
[viewers-project]: https://github.com/OHIF/Viewers
|
||||
[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
|
||||
[pwa]: https://developers.google.com/web/progressive-web-apps/
|
||||
[configuration]: ../configuring/index.md
|
||||
[extensions]: ../extensions/index.md
|
||||
[core-github]: https://github.com/OHIF/viewers/platform/core
|
||||
[ui-github]: https://github.com/OHIF/Viewers/platform/ui
|
||||
<!-- prettier-ignore-end -->
|
||||
|
Before Width: | Height: | Size: 3.9 KiB After Width: | Height: | Size: 3.9 KiB |
|
After Width: | Height: | Size: 7.8 KiB |
|
After Width: | Height: | Size: 5.7 KiB |
|
After Width: | Height: | Size: 4.7 KiB |
|
After Width: | Height: | Size: 6.2 KiB |
|
Before Width: | Height: | Size: 3.9 KiB |
@@ -1,12 +0,0 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
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<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
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<g>
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<path fill="#525DF9" d="M110.1,58c-2.3,0-3.5-1.4-3.5-4.2V32.7c0-8.8-7.2-14.7-17.9-14.7c-7.5,0-16.7,3.9-18.3,14.9l-0.1,0.6h8.4 l0.1-0.4c1.4-5.7,5.8-6.9,9.3-6.9c6,0,9.5,2.7,9.5,7.4v2.6l-13.6,1.4c-7.6,0.8-15.7,5-15.7,14.6c0,8.1,6,13.5,14.8,13.5 c6.5,0,11.8-3.4,15-6.8c1.3,4.2,4.5,6.5,9.1,6.5c1.7,0,3.2-0.3,5.2-0.9l0.3-0.1v-7l-0.6,0.2C111.5,57.9,110.9,58,110.1,58z M97.7,43.5v7.3c-4.6,4.6-8.9,6.7-13.5,6.7c-2,0-6.8-0.6-6.8-5.7c0-3.8,2.8-6.3,7.4-6.9L97.7,43.5z"/>
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<path fill="#525DF9" d="M195.8,18c-6.5,0-12,3.1-15.2,6.1v-5.2h-8.9v46h8.9V34.3c2.2-3.2,6.7-8.3,13-8.3c5.6,0,8.7,3.1,8.7,8.8 v30.1h8.9V33.3C211.2,23.7,205.4,18,195.8,18z"/>
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</g>
|
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</svg>
|
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|
Before Width: | Height: | Size: 1.7 KiB |
@@ -1,19 +0,0 @@
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<?xml version="1.0" encoding="utf-8"?>
|
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<!-- Generator: Adobe Illustrator 18.0.0, SVG Export Plug-In . SVG Version: 6.00 Build 0) -->
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<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
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<svg version="1.1" id="Layer_1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px"
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viewBox="0 0 445.9 638" enable-background="new 0 0 445.9 638" xml:space="preserve">
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<g>
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<g>
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<path fill="#5F5DF9" d="M224.5,638C101.1,638,0,537.8,0,414.7V223.3C0,100.2,101.1,0,224.5,0c109.6,0,202.8,78.3,220.9,186.1
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||||
c0,88,71.1,159.5,159.3,159.5c78.3,0,144.2-55.9,157.1-132.9c2.9-17.4,19.3-29.1,36.6-26.2c17.4,2.9,28.6,19.4,25.7,36.7
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C427.2,559.7,334,638,224.5,638z"/>
|
||||
</g>
|
||||
<g opacity="0.5">
|
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<path fill="#5F5DF9" d="M153.6,347.7c-17.6,0-30.7-14.3-30.7-31.9v-92.3c0-56.8,45.8-103,102.8-103c38.9,0,73.9,21.6,91.7,56.4
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||||
c8,15.7,1.7,34.9-14,42.9c-15.7,8-35,1.8-43-13.9c-6.8-13.4-21-21.7-35.8-21.7c-21.8,0-40.2,17.6-40.2,39.2v92.3
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C184.3,333.4,171.2,347.7,153.6,347.7z"/>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
Before Width: | Height: | Size: 1.2 KiB |
|
After Width: | Height: | Size: 422 KiB |
|
After Width: | Height: | Size: 117 KiB |
|
After Width: | Height: | Size: 19 KiB |
|
After Width: | Height: | Size: 230 KiB |
|
After Width: | Height: | Size: 99 KiB |
|
After Width: | Height: | Size: 21 KiB |
|
After Width: | Height: | Size: 26 KiB |
@@ -0,0 +1,80 @@
|
||||
# Configuration
|
||||
|
||||
> This step assumes you have an imaging archive. If you need assistance setting
|
||||
> one up, check out the [`Data Source` Guide](./data-source.md) or a deployment
|
||||
> recipe that contains an open Image Archive
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Configuration Files](#configuration-files)
|
||||
- [Environment Variables](#environment-variables)
|
||||
- [How do I configure my project?](#how-do-i-configure-my-project)
|
||||
|
||||
## Overview
|
||||
|
||||
### Configuration Files
|
||||
|
||||
The configuration for our viewer is in the `<root>platform/viewer/public/config`
|
||||
directory. Our build process knows which configuration file to use based on the
|
||||
`APP_CONFIG` environment variable. By default, its value is
|
||||
[`config/default.js`][default-config]. The majority of the viewer's features,
|
||||
and registered extension's features, are configured using this file.
|
||||
|
||||
**Embedded Use Note:**
|
||||
|
||||
Alternatively, when using the `umd` bundle for embedded use cases, these same
|
||||
values are what you'll pass to `installViewer` method:
|
||||
|
||||
`OHIFStandaloneViewer.installViewer(window.config)`
|
||||
|
||||
### Environment Variables
|
||||
|
||||
We use environment variables at build and dev time to change the Viewer's
|
||||
behavior. We can update the `HTML_TEMPLATE` to easily change which extensions
|
||||
are registered, and specify a different `APP_CONFIG` to connect to an
|
||||
alternative data source (or even specify different default hotkeys).
|
||||
|
||||
| Environment Variable | Description | Default |
|
||||
| -------------------- | -------------------------------------------------------------------------------------------------- | ------------------- |
|
||||
| `HTML_TEMPLATE` | Which [HTML template][html-templates] to use as our web app's entry point. Specific to PWA builds. | `index.html` |
|
||||
| `PUBLIC_URL` | The route relative to the host that the app will be served from. Specific to PWA builds. | `/` |
|
||||
| `APP_CONFIG` | Which [configuration file][config-file] to copy to output as `app-config.js` | `config/default.js` |
|
||||
| `PROXY_TARGET` | When developing, proxy requests that match this pattern to `PROXY_DOMAIN` | `undefined` |
|
||||
| `PROXY_DOMAIN` | When developing, proxy requests from `PROXY_TARGET` to `PROXY_DOMAIN` | `undefined` |
|
||||
|
||||
## How do I configure my project?
|
||||
|
||||
The simplest way is to update the existing default config:
|
||||
|
||||
_/platform/viewer/public/config/default.js_
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
After updating the configuration, `yarn run build` to generate updated build
|
||||
output.
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[default-config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js
|
||||
[html-templates]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/html-templates
|
||||
[config-files]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,8 +1,9 @@
|
||||
# Data Source
|
||||
|
||||
After following the steps outlined in [Getting Started](./getting-started.md),
|
||||
you'll notice that the OHIF Viewer has data for several studies and their
|
||||
images. You didn't add this data, so where is it coming from?
|
||||
After following the steps outlined in
|
||||
[Getting Started](./../development/getting-started.md), you'll notice that the
|
||||
OHIF Viewer has data for several studies and their images. You didn't add this
|
||||
data, so where is it coming from?
|
||||
|
||||
By default, the viewer is configured to connect to a remote server hosted by the
|
||||
nice folks over at [dcmjs.org][dcmjs-org]. While convenient for getting started,
|
||||
@@ -35,10 +36,10 @@ For our purposes, we will be using `Orthanc`, but you can see a list of
|
||||
_Not sure if you have `docker` installed already? Try running `docker --version`
|
||||
in command prompt or terminal_
|
||||
|
||||
> If you are using `Docker Toolbox` you need to change the _proxy_ parameter in
|
||||
> _package.json_ to http://192.168.99.100:8042 or the ip docker-machine ip
|
||||
> throws. This is the value [`react-scripts`][react-proxy] uses to proxy
|
||||
> requests
|
||||
> If you are using `Docker Toolbox` you need to change the _PROXY_DOMAIN_
|
||||
> parameter in _platform/viewer/package.json_ to http://192.168.99.100:8042 or
|
||||
> the ip docker-machine ip throws. This is the value [`WebPack`][webpack-proxy]
|
||||
> uses to proxy requests
|
||||
|
||||
### Running Orthanc
|
||||
|
||||
@@ -51,8 +52,9 @@ yarn run orthanc:up
|
||||
|
||||
_Upload your first Study:_
|
||||
|
||||
1. Navigate to [Orthanc's web interface](http://localhost:8899) at
|
||||
`http://localhost:8899` in a web browser.
|
||||
1. Navigate to
|
||||
[Orthanc's web interface](http://localhost:8042/app/explorer.html) at
|
||||
`http://localhost:8042/app/explorer.html` in a web browser.
|
||||
2. In the top right corner, click "Upload"
|
||||
3. Click "Select files to upload..." and select one or more DICOM files
|
||||
4. Click "Start the upload"
|
||||
@@ -60,17 +62,20 @@ _Upload your first Study:_
|
||||
#### Orthanc: Learn More
|
||||
|
||||
You can see the `docker-compose.yml` file this command runs at
|
||||
[`<project-root>/docker/Nginx-Docker/`](#), and more on Orthanc for Docker in
|
||||
[Orthanc's documentation][orthanc-docker].
|
||||
[`<project-root>/.docker/Nginx-Orthanc/`][orthanc-docker-compose], and more on
|
||||
Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
|
||||
|
||||
### Connecting to Orthanc
|
||||
|
||||
Now that we have a local Orthanc instance up and running, we need to configure
|
||||
our web application to connect to it. Open a new terminal window, navigate to
|
||||
this project's root directory, and run:
|
||||
this repository's root directory, and run:
|
||||
|
||||
```bash
|
||||
# If you haven't already, restore dependencies
|
||||
# If you haven't already, enable yarn workspaces
|
||||
yarn config set workspaces-experimental true
|
||||
|
||||
# Restore dependencies
|
||||
yarn install
|
||||
|
||||
# Run our dev command, but with the local orthanc config
|
||||
@@ -80,26 +85,31 @@ yarn run dev:orthanc
|
||||
#### Configuration: Learn More
|
||||
|
||||
> For more configuration fun, check out the
|
||||
> [Essentials Configuration](./configuration.md) guide.
|
||||
> [Essentials Configuration](./index.md) guide.
|
||||
|
||||
Let's take a look at what's going on under the hood here. `yarn run dev:orthanc`
|
||||
is running the `dev:orthanc` script in our project's `package.json`. That script
|
||||
is:
|
||||
|
||||
```js
|
||||
cross-env PORT=5000 REACT_APP_CONFIG=config/docker_nginx-orthanc.js react-scripts start
|
||||
cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
|
||||
```
|
||||
|
||||
- `cross-env` sets two environment variables
|
||||
- PORT: 5000
|
||||
- REACT_APP_CONFIG: `config/docker_nginx-orthanc.js`
|
||||
- `react-scripts` runs it's `start` script. This is [the de-facto
|
||||
way][cra-start] to run a "Create React App" in development mode.
|
||||
- `cross-env` sets three environment variables
|
||||
- PROXY_TARGET: `/dicom-web`
|
||||
- PROXY_DOMAIN: `http://localhost:8042`
|
||||
- APP_CONFIG: `config/docker_nginx-orthanc.js`
|
||||
- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
|
||||
file. It will watch for changes and update as we develop.
|
||||
|
||||
The `REACT_APP_CONFIG` value tells our app which file to load on to
|
||||
`window.config`. By default, our app uses the file at
|
||||
`<project-root>/public/config/default.js`. Here is what that configuration looks
|
||||
like:
|
||||
`PROXY_TARGET` and `PROXY_DOMAIN` tell our development server to proxy requests
|
||||
to `Orthanc`. This allows us to bypass CORS issues that normally occur when
|
||||
requesting resources that live at a different domain.
|
||||
|
||||
The `APP_CONFIG` value tells our app which file to load on to `window.config`.
|
||||
By default, our app uses the file at
|
||||
`<project-root>/platform/viewer/public/config/default.js`. Here is what that
|
||||
configuration looks like:
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
@@ -121,7 +131,7 @@ window.config = {
|
||||
```
|
||||
|
||||
To learn more about how you can configure the OHIF Viewer, check out our
|
||||
[Configuration Guide](./configuration.md).
|
||||
[Configuration Guide](./index.md).
|
||||
|
||||
## Open Source DICOM Image Archives
|
||||
|
||||
@@ -146,8 +156,8 @@ _Feel free to make a Pull Request if you want to add to this list._
|
||||
[dcmjs-org]: https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado
|
||||
[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
|
||||
[storescu]: http://support.dcmtk.org/docs/storescu.html
|
||||
[cra-start]: https://github.com/facebook/create-react-app#npm-start-or-yarn-start
|
||||
[react-proxy]: https://facebook.github.io/create-react-app/docs/proxying-api-requests-in-development#configuring-the-proxy-manually
|
||||
[webpack-proxy]: https://webpack.js.org/configuration/dev-server/#devserverproxy
|
||||
[orthanc-docker-compose]: https://github.com/OHIF/Viewers/tree/master/.docker/Nginx-Orthanc
|
||||
<!-- Archives -->
|
||||
[dcm4chee]: https://github.com/dcm4che/dcm4chee-arc-light
|
||||
[dcm4chee-docker]: https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker
|
||||
@@ -35,10 +35,10 @@ Images can even be transcoded on the fly if this is desired.
|
||||
- Choose the "Web Application" type
|
||||
- Set up an
|
||||
[OAuth 2.0 Client ID](https://support.google.com/cloud/answer/6158849?hl=en)
|
||||
- Add your domain (e.g. `http://localhost:5000`) to Authorized JavaScript
|
||||
- Add your domain (e.g. `http://localhost:3000`) to Authorized JavaScript
|
||||
origins.
|
||||
- Add your domain, plus `callback` (e.g.
|
||||
`http://localhost:5000/callback`) to Authorized Redirect URIs.
|
||||
- Add your domain, plus `callback` (e.g. `http://localhost:3000/callback`) to
|
||||
Authorized Redirect URIs.
|
||||
- Save your Client ID for later.
|
||||
|
||||
- (Optional): Enable Public Datasets that are being hosted by Google:
|
||||
@@ -46,21 +46,21 @@ Images can even be transcoded on the fly if this is desired.
|
||||
|
||||
## Run the viewer with your OAuth Client ID
|
||||
|
||||
1. Open the `config/google.js` file and change `YOURCLIENTID` to
|
||||
your Client ID value.
|
||||
1. Open the `config/google.js` file and change `YOURCLIENTID` to your Client ID
|
||||
value.
|
||||
1. Run the OHIF Viewer using the config/google.js configuration file
|
||||
|
||||
```bash
|
||||
cd OHIFViewer
|
||||
yarn install
|
||||
REACT_APP_CONFIG=config/google.js yarn run dev
|
||||
APP_CONFIG=config/google.js yarn run dev
|
||||
```
|
||||
|
||||
## Running via Docker
|
||||
|
||||
The OHIF Viewer Docker container can be connected to Google Cloud
|
||||
Healthcare by providing a Client ID at runtime. This is a very simple
|
||||
method to get up and running.
|
||||
The OHIF Viewer Docker container can be connected to Google Cloud Healthcare by
|
||||
providing a Client ID at runtime. This is a very simple method to get up and
|
||||
running.
|
||||
|
||||
1. Install Docker (https://www.docker.com/)
|
||||
1. Run the Docker container, providing a Client ID as an environment variable.
|
||||
|
||||
@@ -1,103 +0,0 @@
|
||||
# Contributing
|
||||
|
||||
## I would like to contribute code - how do I do this?
|
||||
|
||||
Fork the repository, make your change and submit a pull request.
|
||||
|
||||
- The OHIF Viewer consists of code from three different repositories. Make sure
|
||||
your change is modifying the appropriate one:
|
||||
- `ohif-core`: Business Logic
|
||||
- `react-viewerbase`: Reusable React Component Library
|
||||
- `Viewers`: The glue, PWA, and primary extension point
|
||||
- At a minimum, you may want to read the following documentation:
|
||||
- [Essentials: Getting Started](./essentials/getting-started.md)
|
||||
- [Advanced: Architecture](./advanced/architecture.md)
|
||||
|
||||
### When changes impact multiple repositories
|
||||
|
||||
This is a particularly tricky scenario. We don't want to publish code in one
|
||||
repository, just so we can test and complete the other half of its requirements
|
||||
in another. Thankfully, there are a couple of ways you can test unpublished
|
||||
dependent changes locally before publishing:
|
||||
|
||||
- [Use `yarn link`](https://yarnpkg.com/en/docs/cli/link)
|
||||
|
||||
For example if you are working on `ohif-core` and would like to use your local
|
||||
version to debug a problem in `Viewers`, simply run yarn link inside of the
|
||||
`ohif-core` project.
|
||||
|
||||
- If you're experiencing issues with `yarn link`,
|
||||
[try `yalc`](https://github.com/whitecolor/yalc)
|
||||
|
||||
Yalc provides an improved workflow as we add more and more dependent packages
|
||||
that are "in-progress". This comes into play as we begin working on extensions
|
||||
and their dependencies.
|
||||
|
||||
```js
|
||||
// Install yalc for the first time
|
||||
yarn global add yalc
|
||||
|
||||
// EXAMPLE: using an in-development version of ohif-core w/ Viewers locally
|
||||
// 1. Navigate to ohif-core's project root
|
||||
yarn install
|
||||
yalc publish
|
||||
|
||||
// 2. Run the following after each change to ohif-core
|
||||
yarn build
|
||||
yalc push .
|
||||
|
||||
// 3. Use the local package in our Viewers project. Navigate to the Viewers
|
||||
// Project root.
|
||||
yarn install
|
||||
yalc add ohif-core
|
||||
yarn run dev
|
||||
```
|
||||
|
||||
## Any guidance on submitting changes?
|
||||
|
||||
While we do appreciate code contributions, triaging and integrating contributed
|
||||
code changes can be very time consuming. Please consider the following tips when
|
||||
working on your pull requests:
|
||||
|
||||
- Functionality is appropriate for the repository. Consider creating a GitHub
|
||||
issue to discuss your suggested changes.
|
||||
- The scope of the pull request is not too large. Please consider separate pull
|
||||
requests for each feature as big pull requests are very time consuming to
|
||||
understand.
|
||||
|
||||
We will provide feedback on your pull requests as soon as possible. Following
|
||||
the tips above will help ensure your changes are reviewed.
|
||||
|
||||
## Testing contribution pull requests
|
||||
|
||||
OHIF uses [netlify](netlify.com) so that pull requests are autogenerated and
|
||||
available for testing.
|
||||
|
||||
For example, [this url][example-url] allows you to test [pull request 237, the
|
||||
request that created this FAQ entry,][pr-237] using data pulled from Amazon S3.
|
||||
|
||||
Replacing the number 237 in the link below with your pull request number should
|
||||
let you test it as well and you can use this link for discussions on github
|
||||
without requiring reviewers to download and build your branch.
|
||||
|
||||
```bash
|
||||
https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
|
||||
```
|
||||
|
||||
If you have made a documentation change, a link like this will let you preview
|
||||
the gitbook generated by the pull request:
|
||||
|
||||
```bash
|
||||
https://deploy-preview-237--ohif.netlify.com/contributing.html
|
||||
```
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
|
||||
[example-url]: https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
|
||||
[pr-237]: https://github.com/OHIF/Viewers/pull/237
|
||||
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,18 +1,18 @@
|
||||
# Deployment
|
||||
|
||||
The OHIF Viewer can be embedded in other web applications via it's [packaged
|
||||
script source][ohif-viewer-npm], or served up as a stand-alone PWA ([progressive
|
||||
web application][pwa-url]) by building and hosting a collection of static
|
||||
assets. In either case, you will need to configure your instance of the Viewer
|
||||
so that it can connect to your data source (the database or PACS that provides
|
||||
the data your Viewer will display).
|
||||
script source][viewer-npm], or served up as a stand-alone PWA ([progressive web
|
||||
application][pwa-url]) by building and hosting a collection of static assets. In
|
||||
either case, you will need to configure your instance of the Viewer so that it
|
||||
can connect to your data source (the database or PACS that provides the data
|
||||
your Viewer will display).
|
||||
|
||||
## Overview
|
||||
|
||||
Our goal is to make deployment as simple and painless as possible; however,
|
||||
there is an inherent amount of complexity in customizing, optimizing, and
|
||||
deploying web applications. If you find yourself a little lost, please don't
|
||||
hesitate to [reach out for help](/help.md)
|
||||
there is an inherent amount of complexity in configuring and deploying web
|
||||
applications. If you find yourself a little lost, please don't hesitate to
|
||||
[reach out for help](/help.md)
|
||||
|
||||
## Deployment Scenarios
|
||||
|
||||
@@ -35,8 +35,7 @@ benefits, but comes at the cost of time and complexity. Some benefits include:
|
||||
|
||||
_Today:_
|
||||
|
||||
- Leverage [extensions](/advanced/extensions.md) to drop-in powerful new
|
||||
features
|
||||
- Leverage [extensions](/extensions/index.md) to drop-in powerful new features
|
||||
- Add routes and customize the viewer's workflow
|
||||
- Finer control over styling and whitelabeling
|
||||
|
||||
@@ -97,12 +96,12 @@ support it yet, but it is gaining wider adoption.
|
||||
If you have an existing archive and intend to host the OHIF Viewer at the same
|
||||
domain name as your archive, then connecting the two is as simple as following
|
||||
the steps layed out in our
|
||||
[Configuration Essentials Guide](./../essentials/configuration.md).
|
||||
[Configuration Essentials Guide](./../configuring/index.md).
|
||||
|
||||
#### What if I don't have an imaging archive?
|
||||
|
||||
We provide some guidance on configuring a local image archive in our
|
||||
[Data Source Essentials](./../essentials/data-source.md) guide. Hosting an
|
||||
[Data Source Essentials](./../configuring/data-source.md) guide. Hosting an
|
||||
archive remotely is a little trickier. You can check out some of our
|
||||
[advanced recipes](#recipes) for modeled setups that may work for you.
|
||||
|
||||
@@ -143,7 +142,7 @@ The OHIF Viewer can be configured to work with authorization servers that
|
||||
support one or more of the OpenID-Connect authorization flows. The Viewer finds
|
||||
it's OpenID-Connect settings on the `oidc` configuration key. You can set these
|
||||
values following the instructions laid out in the
|
||||
[Configuration Essentials Guide](./../essentials/configuration.md).
|
||||
[Configuration Essentials Guide](./../configuring/index.md).
|
||||
|
||||
_Example OpenID-Connect Settings:_
|
||||
|
||||
@@ -196,8 +195,7 @@ Please feel free to suggest or contribute your own recipes.
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
|
||||
[ohif-viewer-npm]: https://www.npmjs.com/package/ohif-viewer
|
||||
[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
|
||||
[pwa-url]: https://developers.google.com/web/progressive-web-apps/
|
||||
[static-assets-url]: https://www.maxcdn.com/one/visual-glossary/static-content/
|
||||
[app-store]: https://medium.freecodecamp.org/i-built-a-pwa-and-published-it-in-3-app-stores-heres-what-i-learned-7cb3f56daf9b
|
||||
@@ -206,5 +204,5 @@ Please feel free to suggest or contribute your own recipes.
|
||||
[host-static-assets]: https://www.netlify.com/blog/2016/05/18/9-reasons-your-site-should-be-static/
|
||||
[cors]: https://developer.mozilla.org/en-US/docs/Web/HTTP/CORS
|
||||
[code-flows]: https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660
|
||||
[code-sandbox]: https://codesandbox.io/s/ohif-viewer-script-tag-usage-b3st9
|
||||
[code-sandbox]: https://codesandbox.io/s/viewer-script-tag-tprch
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,7 +1,7 @@
|
||||
# Build for Production
|
||||
|
||||
> If you've already followed the
|
||||
> ["Getting Started" Guide](/essentials/getting-started.md), you can skip ahead
|
||||
> ["Getting Started" Guide](/development/getting-started.md), you can skip ahead
|
||||
> to [Configuration](#configuration)
|
||||
|
||||
## Overview
|
||||
@@ -19,9 +19,6 @@ _With Git:_
|
||||
```bash
|
||||
# Clone the remote repository to your local machine
|
||||
git clone https://github.com/OHIF/Viewers.git
|
||||
|
||||
# Make sure the local code reflects the `react` version of the OHIF Viewer
|
||||
git checkout react
|
||||
```
|
||||
|
||||
More on: _[`git clone`](https://git-scm.com/docs/git-clone),
|
||||
@@ -29,7 +26,7 @@ More on: _[`git clone`](https://git-scm.com/docs/git-clone),
|
||||
|
||||
_From .zip:_
|
||||
|
||||
[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/react.zip)
|
||||
[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/master.zip)
|
||||
|
||||
### Restore Dependencies & Build
|
||||
|
||||
@@ -37,20 +34,24 @@ Open your terminal, and navigate to the directory containing the source files.
|
||||
Next run these commands:
|
||||
|
||||
```js
|
||||
// If you haven't already, enable yarn workspaces
|
||||
yarn config set workspaces-experimental true
|
||||
|
||||
// Restore dependencies
|
||||
yarn install
|
||||
|
||||
// Build source code for production
|
||||
yarn run build:web
|
||||
yarn run build
|
||||
```
|
||||
|
||||
If everything worked as expected, you should have a new `build/` directory in
|
||||
the project's folder. It should roughly resemble the following:
|
||||
If everything worked as expected, you should have a new `dist/` directory in the
|
||||
project's folder. It should roughly resemble the following:
|
||||
|
||||
```bash
|
||||
build
|
||||
├── config/
|
||||
├── static/
|
||||
<root>platform/viewer/dist/
|
||||
├── app-config.js
|
||||
├── app.bundle.js
|
||||
├── app.css
|
||||
├── index.html
|
||||
├── manifest.json
|
||||
├── service-worker.js
|
||||
@@ -64,60 +65,15 @@ how to configure the project for your own imaging archive below.
|
||||
|
||||
### Configuration
|
||||
|
||||
> This step assumes you have an imaging archive. If you need assistance setting
|
||||
> one up, check out the [`Data Source` Guide](./../../essentials/data-source.md)
|
||||
> or a deployment recipe that contains an open source Image Archive
|
||||
The configuration for our viewer is in the `<root>platform/viewer/public/config`
|
||||
directory. Our build process knows which configuration file to use based on the
|
||||
`APP_CONFIG` environment variable. By default, its value is
|
||||
[`config/default.js`][default-config]. The majority of the viewer's features,
|
||||
and registered extension's features, are configured using this file.
|
||||
|
||||
#### How it Works
|
||||
|
||||
The configuration for our project is in the `/public/config` directory. Our
|
||||
build process knows which configuration file to use based on the
|
||||
`REACT_APP_CONFIG` environment variable. By default, its value is
|
||||
[`default.js`](https://github.com/OHIF/Viewers/blob/react/public/config/default.js).
|
||||
When we build, the `%REACT_APP_CONFIG%` value in
|
||||
our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/react/public/index.html#L12-L15)
|
||||
file is substituted for the correct configuration file's name. This sets
|
||||
the`window.config` equal to our configuration file's value.
|
||||
|
||||
#### How do I configure my project?
|
||||
|
||||
The simplest way is to update the existing default config:
|
||||
|
||||
_/public/config/default.js_
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
requestOptions: {
|
||||
requestFromBrowser: true,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
}
|
||||
```
|
||||
|
||||
You can also create a new config file and specify its path relative to the build
|
||||
output's root by setting the `REACT_APP_CONFIG` environment variable. You can
|
||||
set the value of this environment variable a few different ways:
|
||||
|
||||
- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
|
||||
- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
|
||||
- Using the `cross-env` package in an npm script:
|
||||
- `"build": "cross-env REACT_APP_CONFIG=config/my-config.js react-scripts build"`
|
||||
|
||||
After updating the configuration, `yarn run build:web` to generate updated build
|
||||
output.
|
||||
The easiest way to apply your own configuration is to modify the `default.js`
|
||||
file. For more advanced cofiguration options, check out our
|
||||
[configuration essentials guide](/configuring/index.md).
|
||||
|
||||
## Next Steps
|
||||
|
||||
@@ -141,7 +97,7 @@ _Advanced_
|
||||
### Testing Build Output Locally
|
||||
|
||||
A quick way to test your build output locally is to spin up a small webserver.
|
||||
You can do this by running the following commands in the `build/` output
|
||||
You can do this by running the following commands in the `dist/` output
|
||||
directory:
|
||||
|
||||
```js
|
||||
@@ -162,8 +118,7 @@ web application. For a starting point, check out this repository's own use of:
|
||||
|
||||
- [CircleCI][circleci]: [config.yaml][circleci-config]
|
||||
- [Netlify][netlify]: [netlify.toml][netlify.toml] |
|
||||
[generateStaticSite.sh][generatestaticsite.sh]
|
||||
- [Semantic-Release][semantic-release]: [.releaserc][releaserc]
|
||||
[build-deploy-preview.sh][build-deploy-preview.sh]
|
||||
|
||||
## Troubleshooting
|
||||
|
||||
@@ -173,10 +128,8 @@ web application. For a starting point, check out this repository's own use of:
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[circleci]: https://circleci.com/gh/OHIF/Viewers
|
||||
[circleci-config]: https://github.com/OHIF/Viewers/blob/react/.circleci/config.yml
|
||||
[circleci-config]: https://github.com/OHIF/Viewers/blob/master/.circleci/config.yml
|
||||
[netlify]: https://app.netlify.com/sites/ohif/deploys
|
||||
[netlify.toml]: https://github.com/OHIF/Viewers/blob/react/netlify.toml
|
||||
[generateStaticSite.sh]: https://github.com/OHIF/Viewers/blob/react/generateStaticSite.sh
|
||||
[semantic-release]: https://semantic-release.gitbook.io/semantic-release/
|
||||
[releaserc]: https://github.com/OHIF/Viewers/blob/react/.releaserc
|
||||
[netlify.toml]: https://github.com/OHIF/Viewers/blob/master/netlify.toml
|
||||
[build-deploy-preview.sh]: https://github.com/OHIF/Viewers/blob/master/.netlify/build-deploy-preview.sh
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -12,35 +12,18 @@ include tags. Here's how it works:
|
||||
|
||||
<ul>
|
||||
<li>
|
||||
<a href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
|
||||
<code>bootstrap@3.3.7</code>
|
||||
<a href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700&display=swap">
|
||||
<code>Google Font: Roboto</code>
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700|Sanchez&display=swap">
|
||||
<code>Google Fonts, Sanchez & Roboto</code>
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://unpkg.com/react@16/umd/react.production.min.js">
|
||||
<code>react@16.8.6</code>
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://unpkg.com/react-dom@16/umd/react-dom.production.min.js">
|
||||
<code>react-dom@16.8.6</code>
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://unpkg.com/ohif-viewer/dist/index.umd.js">
|
||||
<code>ohif-viewer@latest</code>
|
||||
<a href="https://unpkg.com/@ohif/viewer">
|
||||
<code>@ohif/viewer@latest</code>
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
|
||||
<ol start="2">
|
||||
<li>The <a href="">WADO Image Loader Codecs and Web Worker source code</a>
|
||||
should be accessible from your server's root</li>
|
||||
<li>Create a JS Object to hold the OHIF Viewer's configuration. Here are some
|
||||
example values that would allow the viewer to hit our public PACS:</li>
|
||||
</ol>
|
||||
@@ -60,28 +43,64 @@ window.config = {
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
requestOptions: {
|
||||
requestFromBrowser: true,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
};
|
||||
```
|
||||
|
||||
<ol start="5"><li>
|
||||
<ol start="3"><li>
|
||||
Render the viewer in the web page's target <code>div</code>
|
||||
</li></ol>
|
||||
|
||||
```js
|
||||
// Made available by the `ohif-viewer` script included in step 1
|
||||
var Viewer = window.OHIFStandaloneViewer.App;
|
||||
var app = React.createElement(Viewer, window.config, null);
|
||||
|
||||
ReactDOM.render(app, document.getElementById('ohif-viewer-target'));
|
||||
// Made available by the `@ohif/viewer` script included in step 1
|
||||
var containerId = 'id-of-div-to-render-component-to';
|
||||
var componentRenderedOrUpdatedCallback = function() {
|
||||
console.log('OHIF Viewer rendered/updated');
|
||||
};
|
||||
window.OHIFViewer.installViewer(
|
||||
window.config,
|
||||
containerId,
|
||||
componentRenderedOrUpdatedCallback
|
||||
);
|
||||
```
|
||||
|
||||
#### Tips & Tricks
|
||||
You can see a live example of this recipe in [this CodeSandbox][code-sandbox].
|
||||
|
||||
## Add Extensions
|
||||
|
||||
The UMD build of the OHIF Viewer is a "light weight" build that only contains
|
||||
the core extensions required for basic 2D image viewing. It's possible to add
|
||||
other extensions at runtime.
|
||||
|
||||
This only requires us to include a single script tag, and add it using the
|
||||
`extensions` key to our config. In this practical example, we register our
|
||||
popular whole slide microscopy extension:
|
||||
|
||||
```html
|
||||
<script
|
||||
src="https://unpkg.com/@ohif/extension-dicom-microscopy@0.50.5/dist/index.umd.js"
|
||||
crossorigin
|
||||
></script>
|
||||
|
||||
<!-- --->
|
||||
<script>
|
||||
window.config = {
|
||||
// ...
|
||||
extensions: [OHIFExtDicomMicroscopy],
|
||||
};
|
||||
</script>
|
||||
```
|
||||
|
||||
You can see an example of a slide microscopy study in the viewer [with the
|
||||
extension enabled here][whole-slide-ext-demo] ([source code][ext-code-sandbox])
|
||||
and [without it here][whole-slide-base-demo] ([source code][code-sandbox]).
|
||||
|
||||
You can read more about extensions and how to create your own in our
|
||||
[extensions guide](/extensions/index.md).
|
||||
|
||||
#### FAQ
|
||||
|
||||
> I'm having trouble getting this to work. Where can I go for help?
|
||||
|
||||
@@ -89,16 +108,34 @@ First, check out this fully functional [CodeSandbox][code-sandbox] example. If
|
||||
you're still having trouble, feel free to search or GitHub issues. Can't find
|
||||
anything related your problem? Create a new one.
|
||||
|
||||
> When I include bootstrap, other styles on my page no longer work correctly.
|
||||
> What can I do?
|
||||
> My application's styles are impacting the OHIF Viewer's look and feel. What
|
||||
> can I do?
|
||||
|
||||
When we include `bootsrap` (and the other dependencies), they are added
|
||||
globally. This has the potential of causing conflicts with other scripts and
|
||||
styles on the page. To prevent this, `embed` the viewer in a new/empty web page.
|
||||
Have that working? Good. Now `embed` that new page using an
|
||||
When you include stylesheets and scripts, they are added globally. This has the
|
||||
potential of causing conflicts with other scripts and styles on the page. To
|
||||
prevent this, `embed` the viewer in a new/empty web page. Have that working?
|
||||
Good. Now `embed` that new page using an
|
||||
[`<iframe>` element](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/iframe).
|
||||
|
||||
This should produce the expected result while also protecting your page from any
|
||||
globally defined styles/scripts.
|
||||
|
||||
[code-sandbox]: https://codesandbox.io/s/ohif-viewer-script-tag-usage-b3st9
|
||||
> We're trying to embed the OHIF Viewer into an existing React App, but seeing
|
||||
> react-dom and react conflicts. What can we do?
|
||||
|
||||
`installViewer` is a convenience method that pulls in some dependencies that may
|
||||
not be compatible with existing `react` apps. `@ohif/viewer` also exports `App`
|
||||
which is a react component that takes the `configuration` outlined above as
|
||||
props. You can use it as a reusable component, and to avoid `react` version
|
||||
conflict issues.
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[code-sandbox]: https://codesandbox.io/s/viewer-script-tag-tprch
|
||||
[whole-slide-base-demo]: https://tprch.csb.app/viewer/1.2.392.200140.2.1.1.1.2.799008771.2020.1519719354.757
|
||||
[ext-code-sandbox]: https://codesandbox.io/s/viewer-script-tag-microscopy-extension-44unk
|
||||
[whole-slide-ext-demo]: https://44unk.csb.app/viewer/1.2.392.200140.2.1.1.1.2.799008771.2448.1519719572.518
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -11,7 +11,7 @@ control.
|
||||
Do not use this recipe to host sensitive medical data on the open web. Depending
|
||||
on your company's policies, this may be an appropriate setup on an internal
|
||||
network when protected with a server's basic authentication. For a more robust
|
||||
setup, check out our [user account control recpie](./user-account-control.md)
|
||||
setup, check out our [user account control recipe](./user-account-control.md)
|
||||
that builds on the lessons learned here.
|
||||
|
||||
## Overview
|
||||
@@ -51,7 +51,7 @@ We can solve this one of two ways:
|
||||
|
||||
This solution uses the first approach, but you can see an example of the second
|
||||
in the `docker-compose` bundled with this project for local development:
|
||||
[HERE](#)
|
||||
[HERE](https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/Nginx-Orthanc/docker-compose.yml)
|
||||
|
||||
You can read more about CORS in this Medium article: [Understanding
|
||||
CORS][understanding-cors]
|
||||
@@ -121,13 +121,9 @@ likely want to update:
|
||||
|
||||
#### OHIF Viewer
|
||||
|
||||
The OHIF Viewer's configuration is imported from a static `.js` file and made
|
||||
available globally at `window.config`. The configuration we use is set to a
|
||||
specific file when we build the viewer, and determined by the env variable:
|
||||
`REACT_APP_CONFIG`. You can see where we set its value in the `dockerfile` for
|
||||
this solution:
|
||||
The OHIF Viewer's configuration is imported from a static `.js` file. The configuration we use is set to a specific file when we build the viewer, and determined by the env variable: `APP_CONFIG`. You can see where we set its value in the `dockerfile` for this solution:
|
||||
|
||||
`ENV REACT_APP_CONFIG=config/docker_openresty-orthanc.js`
|
||||
`ENV APP_CONFIG=config/docker_openresty-orthanc.js`
|
||||
|
||||
You can find the configuration we're using here:
|
||||
`/public/config/docker_openresty-orthanc.js`
|
||||
|
||||
@@ -122,13 +122,9 @@ likely want to update:
|
||||
|
||||
#### OHIF Viewer
|
||||
|
||||
The OHIF Viewer's configuration is imported from a static `.js` file and made
|
||||
available globally at `window.config`. The configuration we use is set to a
|
||||
specific file when we build the viewer, and determined by the env variable:
|
||||
`REACT_APP_CONFIG`. You can see where we set its value in the `dockerfile` for
|
||||
this solution:
|
||||
The OHIF Viewer's configuration is imported from a static `.js` file. The configuration we use is set to a specific file when we build the viewer, and determined by the env variable: `APP_CONFIG`. You can see where we set its value in the `dockerfile` for this solution:
|
||||
|
||||
`ENV REACT_APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
|
||||
`ENV APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
|
||||
|
||||
You can find the configuration we're using here:
|
||||
`/public/config/docker_openresty-orthanc-keycloak.js`
|
||||
@@ -281,9 +277,9 @@ community members put together:
|
||||
[orthanc-docs]: http://book.orthanc-server.com/users/configuration.html#configuration
|
||||
[lua-resty-openidc-docs]: https://github.com/zmartzone/lua-resty-openidc
|
||||
<!-- SRC -->
|
||||
[config]: #
|
||||
[dockerfile]: #
|
||||
[config-nginx]: #
|
||||
[config-orthanc]: #
|
||||
[config-keycloak]: #
|
||||
[config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/src/config.js
|
||||
[dockerfile]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
|
||||
[config-nginx]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
|
||||
[config-orthanc]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
|
||||
[config-keycloak]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -0,0 +1,109 @@
|
||||
# Continous Integration (CI)
|
||||
|
||||
This repository uses `CircleCI` and `Netlify` for continous integration.
|
||||
|
||||
## Deploy Previews
|
||||
|
||||
[Netlify Deploy previews][deploy-previews] are generated for every pull request.
|
||||
They allow pull request authors and reviewers to "Preview" the OHIF Viewer as if
|
||||
the changes had been merged.
|
||||
|
||||
Deploy previews can be configured by modifying the `netlify.toml` file in the
|
||||
root of the repository. Some additional scripts/assets for netlify are included
|
||||
in the root `.netlify` directory.
|
||||
|
||||
## Workflows
|
||||
|
||||
[CircleCI Workflows][circleci-workflows] are a set of rules for defining a
|
||||
collection of jobs and their run order. They are self-documenting and their
|
||||
configuration can be found in our CircleCI configuration file:
|
||||
`.circleci/config.yml`.
|
||||
|
||||
### Workflow: PR_CHECKS
|
||||
|
||||
The PR_CHECKS workflow (Pull Request Checks) runs our automated unit and
|
||||
end-to-end tests for every code check-in. These tests must all pass before code
|
||||
can be merged to our `master` branch.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_PR_CHECKS.png">
|
||||
<img src="/assets/img/WORKFLOW_PR_CHECKS.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for PR_CHECKS</i></div>
|
||||
</div>
|
||||
|
||||
### Workflow: PR_OPTIONAL_DOCKER_PUBLISH
|
||||
|
||||
The PR_OPTIONAL_DOCKER_PUBLISH workflow allows for "manual approval" to publish
|
||||
the pull request as a tagged docker image. This is helpful when changes need to
|
||||
be tested with the Google Adapter before merging to `master`.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png">
|
||||
<img src="/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for PR_WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH</i></div>
|
||||
</div>
|
||||
|
||||
> NOTE: This workflow will fail unless it's for a branch on our `upstream`
|
||||
> repository. If you need this functionality, but the branch is from a fork,
|
||||
> merge the changes to a short-lived `feature/` branch on `upstream`
|
||||
|
||||
### Workflow: DEPLOY
|
||||
|
||||
The DEPLOY workflow deploys the OHIF Viewer when changes are merged to master.
|
||||
It uses the Netlify CLI to deploy assets created as part of the repository's PWA
|
||||
Build process (`yarn run build`). The workflow allows for "Manual Approval" to
|
||||
promote the build to `STAGING` and `PRODUCTION` environments.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_DEPLOY.png">
|
||||
<img src="/assets/img/WORKFLOW_DEPLOY.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for WORKFLOW_DEPLOY</i></div>
|
||||
</div>
|
||||
|
||||
| Environment | Description | URL |
|
||||
| ----------- | ---------------------------------------------------------------------------------- | --------------------------------------------- |
|
||||
| Development | Always reflects latest changes on `master` branch. | [Netlify][netlify-dev] / [OHIF][ohif-dev] |
|
||||
| Staging | For manual testing before promotion to prod. Keeps development workflow unblocked. | [Netlify][netlify-stage] / [OHIF][ohif-stage] |
|
||||
| Production | Stable, tested, updated less frequently. | [Netlify][netlify-prod] / [OHIF][ohif-prod] |
|
||||
|
||||
### Workflow: RELEASE
|
||||
|
||||
The RELEASE workflow publishes our `npm` packages, updated documentation, and
|
||||
`docker` image when changes are merged to master. `Lerna` and "Semantic Commit
|
||||
Syntax" are used to independently version and publish the many packages in our
|
||||
monorepository. If a new version is cut/released, a Docker image is created.
|
||||
Documentation is generated with `gitbook` and pushed to our `gh-pages` branch.
|
||||
GitHub hosts the `gh-pages` branch with GitHub Pages.
|
||||
|
||||
- Platform Packages: https://github.com/ohif/viewers/#platform
|
||||
- Extension Packages: https://github.com/ohif/viewers/#extensions
|
||||
- Documentation: https://docs.ohif.org/
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_RELEASE.png">
|
||||
<img src="/assets/img/WORKFLOW_RELEASE.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for WORKFLOW_RELEASE</i></div>
|
||||
</div>
|
||||
|
||||
### HOTFIX
|
||||
|
||||
_Not yet implemented_
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[deploy-previews]: https://www.netlify.com/blog/2016/07/20/introducing-deploy-previews-in-netlify/
|
||||
[circleci-workflows]: https://circleci.com/docs/2.0/workflows/
|
||||
[netlify-dev]: https://ohif-dev.netlify.com
|
||||
[netlify-stage]: https://ohif-stage.netlify.com
|
||||
[netlify-prod]: https://ohif-prod.netlify.com
|
||||
[ohif-dev]: https://viewer-dev.ohif.org
|
||||
[ohif-stage]: https://viewer-stage.ohif.org
|
||||
[ohif-prod]: https://viewer-prod.ohif.org
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -0,0 +1,146 @@
|
||||
# Contributing
|
||||
|
||||
## How can I help?
|
||||
|
||||
Fork the repository, make your change and submit a pull request. If you would
|
||||
like to discuss the changes you intend to make to clarify where or how they
|
||||
should be implemented, please don't hesitate to create a new issue. At a
|
||||
minimum, you may want to read the following documentation:
|
||||
|
||||
- [Getting Started](/development/getting-started.md)
|
||||
- [Architecture](/architecture/index.md)
|
||||
|
||||
Pull requests that are:
|
||||
|
||||
- Small
|
||||
- [Well tested](./testing.md)
|
||||
- Decoupled
|
||||
|
||||
Are much more likely to get reviewed and merged in a timely manner.
|
||||
|
||||
## When changes impact multiple repositories
|
||||
|
||||
While this can be tricky, we've tried to reduce how often this situation crops
|
||||
up this with our [recent switch to a monorepo][monorepo]. Our maintained
|
||||
extensions, ui components, internationalization library, and business logic can
|
||||
all be developed by simply running `yarn run dev` from the repository root.
|
||||
|
||||
Testing the viewer with locally developed, unpublished package changes from a
|
||||
package outside of the monorepo is most common with extension development. Let's
|
||||
demonstrate how to accomplish this with two commonly forked extension
|
||||
dependencies:
|
||||
|
||||
### `cornerstone-tools`
|
||||
|
||||
On your local file system:
|
||||
|
||||
```bash
|
||||
# code/my-projects/
|
||||
.
|
||||
├── cornerstonejs/cornerstone-tools
|
||||
└── ohif/viewers
|
||||
```
|
||||
|
||||
- Open a terminal/shell
|
||||
- Navigate to `cornerstonejs/cornerstone-tools`
|
||||
- `npm install`
|
||||
- [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `npm run dev`
|
||||
- Open a new terminal/shell
|
||||
- Navigate to `ohif/viewers`.
|
||||
- `yarn install`
|
||||
- [`yarn link cornerstone-tools`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `yarn run dev`
|
||||
|
||||
As you make changed to `cornerstone-tools`, and it's output is rebuilt, you
|
||||
should see the following behavior:
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/cornerstone-tools-link.gif">
|
||||
<img src="/assets/img/cornerstone-tools-link.gif" alt="Example of linked cornerstone-tools package" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>example of linked cornerstone-tools package</i></div>
|
||||
</div>
|
||||
|
||||
If you wish to stop using your local package, run the following commands in the
|
||||
`ohif/viewers` repository root:
|
||||
|
||||
- `yarn unlink cornerstone-tools`
|
||||
- `yarn install --force`
|
||||
|
||||
### `react-vtkjs-viewport`
|
||||
|
||||
On your local file system:
|
||||
|
||||
```bash
|
||||
# code/my-projects/
|
||||
.
|
||||
├── ohif/react-vtkjs-viewport
|
||||
└── ohif/viewers
|
||||
```
|
||||
|
||||
- Open a terminal/shell
|
||||
- Navigate to `ohif/react-vtkjs-viewport`
|
||||
- `yarn install`
|
||||
- [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `yarn run start`
|
||||
- Open a new terminal/shell
|
||||
- Navigate to `ohif/viewers`.
|
||||
- `yarn install`
|
||||
- [`yarn link react-vtkjs-viewport`](https://yarnpkg.com/en/docs/cli/link)
|
||||
- `yarn run dev`
|
||||
|
||||
#### Other linkage notes
|
||||
|
||||
We're still working out some of the kinks with local package development as
|
||||
there are a lot of factors that can influence the behavior of our development
|
||||
server and bundler. If you encounter issues not addressed here, please don't
|
||||
hesitate to reach out on GitHub.
|
||||
|
||||
## Any guidance on submitting changes?
|
||||
|
||||
While we do appreciate code contributions, triaging and integrating contributed
|
||||
code changes can be very time consuming. Please consider the following tips when
|
||||
working on your pull requests:
|
||||
|
||||
- Functionality is appropriate for the repository. Consider creating a GitHub
|
||||
issue to discuss your suggested changes.
|
||||
- The scope of the pull request is not too large. Please consider separate pull
|
||||
requests for each feature as big pull requests are very time consuming to
|
||||
understand.
|
||||
|
||||
We will provide feedback on your pull requests as soon as possible. Following
|
||||
the tips above will help ensure your changes are reviewed.
|
||||
|
||||
## Testing contribution pull requests
|
||||
|
||||
OHIF uses [netlify](netlify.com) so that pull requests are autogenerated and
|
||||
available for testing.
|
||||
|
||||
For example, [this url][example-url] allows you to test [pull request 237, the
|
||||
request that created this FAQ entry,][pr-237] using data pulled from Amazon S3.
|
||||
|
||||
Replacing the number 237 in the link below with your pull request number should
|
||||
let you test it as well and you can use this link for discussions on github
|
||||
without requiring reviewers to download and build your branch.
|
||||
|
||||
```bash
|
||||
https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
|
||||
```
|
||||
|
||||
If you have made a documentation change, a link like this will let you preview
|
||||
the gitbook generated by the pull request:
|
||||
|
||||
```bash
|
||||
https://deploy-preview-237--ohif.netlify.com/contributing.html
|
||||
```
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[example-url]: https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
|
||||
[pr-237]: https://github.com/OHIF/Viewers/pull/237
|
||||
[monorepo]: https://github.com/OHIF/Viewers/issues/768
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -24,8 +24,7 @@ graphic that illustrates this setup][triangular-workflow].
|
||||
Alternatively, if you intend to use the OHIF Viewer as a starting point, and you
|
||||
aren't as concerned with syncing updates, then follow these steps:
|
||||
|
||||
1. Navigate to the [OHIF/Viewers/tree/react][ohif-viewers-react-repo] repository
|
||||
and branch
|
||||
1. Navigate to the [OHIF/Viewers][ohif-viewers] repository
|
||||
2. Click `Clone or download`, and then `Download ZIP`
|
||||
3. Use the contents of the `.zip` file as a starting point for your viewer
|
||||
|
||||
@@ -39,6 +38,8 @@ aren't as concerned with syncing updates, then follow these steps:
|
||||
|
||||
- [Node.js & NPM](https://nodejs.org/en/)
|
||||
- [Yarn](https://yarnpkg.com/en/)
|
||||
- Yarn workspaces should be enabled:
|
||||
- `yarn config set workspaces-experimental true`
|
||||
|
||||
### Kick the tires
|
||||
|
||||
@@ -50,21 +51,18 @@ following commands:
|
||||
yarn install
|
||||
|
||||
# Start local development server
|
||||
yarn start
|
||||
yarn run dev
|
||||
```
|
||||
|
||||
You should see the following output:
|
||||
|
||||
```bash
|
||||
Compiled successfully!
|
||||
@ohif/viewer: i 「wds」: Project is running at http://localhost:3000/
|
||||
@ohif/viewer: i 「wds」: webpack output is served from /
|
||||
@ohif/viewer: i 「wds」: Content not from webpack is served from D:\code\ohif\Viewers\platform\viewer
|
||||
@ohif/viewer: i 「wds」: 404s will fallback to /index.html
|
||||
|
||||
You can now view ohif-viewer in the browser.
|
||||
|
||||
Local: http://localhost:5000/
|
||||
On Your Network: http://10.74.20.83:5000/
|
||||
|
||||
Note that the development build is not optimized.
|
||||
To create a production build, use yarn build.
|
||||
# And a list of all generated files
|
||||
```
|
||||
|
||||
### 🎉 Celebrate 🎉
|
||||
@@ -77,28 +75,22 @@ To create a production build, use yarn build.
|
||||
### Building for Production
|
||||
|
||||
> More comprehensive guides for building and publishing can be found in our
|
||||
> [deployment docs](./../deployment/index.md)
|
||||
> [deployment docs](./deployment/index.md)
|
||||
|
||||
```bash
|
||||
# Build static assets to host a PWA
|
||||
yarn run build:web
|
||||
yarn run build
|
||||
|
||||
# Build packaged output
|
||||
# Build packaged output (script-tag use)
|
||||
yarn run build:package
|
||||
```
|
||||
|
||||
## Next Steps
|
||||
|
||||
...
|
||||
|
||||
## Troubleshooting
|
||||
|
||||
- If you receive a _"No Studies Found"_ message and do not see your studies, try
|
||||
changing the Study Date filters to a wider range.
|
||||
- If you see a 'Loading' message which never resolves, check your browser
|
||||
JavaScript console inside the Developer Tools to identify any errors.
|
||||
- If you see any errors in your server console, check the
|
||||
[Troubleshooting](./troubleshooting.md) page for more in depth advice.
|
||||
|
||||
<!--
|
||||
Links
|
||||
@@ -111,5 +103,5 @@ yarn run build:package
|
||||
[sync-changes]: https://help.github.com/en/articles/syncing-a-fork
|
||||
[triangular-workflow]: https://github.blog/2015-07-29-git-2-5-including-multiple-worktrees-and-triangular-workflows/#improved-support-for-triangular-workflows
|
||||
[ohif-viewers-repo]: https://github.com/OHIF/Viewers
|
||||
[ohif-viewers-react-repo]: https://github.com/OHIF/Viewers/tree/react
|
||||
[ohif-viewers]: https://github.com/OHIF/Viewers
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -0,0 +1,145 @@
|
||||
# Contributing: Tests
|
||||
|
||||
> Testing is an opinionated topic. Here is a rough overview of our testing
|
||||
> philosiphy. See something you want to discuss or think should be changed? Open
|
||||
> a PR and let's discuss.
|
||||
|
||||
You're an engineer. You know how to write code, and writing tests isn't all that
|
||||
different. But do you know why we write tests? Do you know when to write one, or
|
||||
what kind of test to write? How do you know if a test is a _"good"_ test? This
|
||||
document's goal is to give you the tools you need to make those determinations.
|
||||
|
||||
Okay. So why do we write tests? To increase our... **CONFIDENCE**
|
||||
|
||||
- If I do a large refactor, does everything still work?
|
||||
- If I changed some critical piece of code, is it safe to push to production?
|
||||
|
||||
Gaining the confidence we need to answer these questions after every change is
|
||||
costly. Good tests allow us to answer them without manual regression testing.
|
||||
What and how we choose to test to increase that confidence is nuanced.
|
||||
|
||||
## Kinds of Tests
|
||||
|
||||
Test's buy us confidence, but not all tests are created equal. Each kind of test
|
||||
has a different cost to write and maintain. An expensive test is worth it if it
|
||||
gives us confidence that a payment is processed, but it may not be the best
|
||||
choice for asserting an element's border color.
|
||||
|
||||
| Test Type | Example | Speed | Cost |
|
||||
| ----------- | ------------------------------------------------------------------------ | ---------------- | ------------------------------------------------------------------------ |
|
||||
| Static | `addNums(1, '2')` called with `string`, expected `int`. | :rocket: Instant | :money_with_wings: |
|
||||
| Unit | `addNums(1, 2)` returns expected result `3` | :airplane: Fast | :money_with_wings::money_with_wings: |
|
||||
| Integration | Clicking "Sign In", navigates to the dashboard (mocked network requests) | :running: Okay | :money_with_wings::money_with_wings::money_with_wings: |
|
||||
| End-to-end | Clicking "Sign In", navigates to the dashboard (no mocks) | :turtle: Slow | :money_with_wings::money_with_wings::money_with_wings::money_with_wings: |
|
||||
|
||||
- :rocket: Speed: How quickly tests run
|
||||
- :money_with_wings: Cost: Time to write, and to debug when broken (more points
|
||||
of failure)
|
||||
|
||||
### Static Code Analysis
|
||||
|
||||
Modern tooling gives us this "for free". It can catch invalid regular
|
||||
expressions, unused variables, and guarantee we're calling methods/functions
|
||||
with the expected paramater types.
|
||||
|
||||
Example Tooling:
|
||||
|
||||
- [ESLint][eslint-rules]
|
||||
- [TypeScript][typescript-docs] or [Flow][flow-org]
|
||||
|
||||
### Unit Tests
|
||||
|
||||
The building blocks of our libraries and applications. For these, you'll often
|
||||
be testing a single function or method. Conceptually, this equates to:
|
||||
|
||||
_Pure Function Test:_
|
||||
|
||||
- If I call `sum(2, 2)`, I expect the output to be `4`
|
||||
|
||||
_Side Effect Test:_
|
||||
|
||||
- If I call `resetViewport(viewport)`, I expect `cornerstone.reset` to be called
|
||||
with `viewport`
|
||||
|
||||
#### When to use
|
||||
|
||||
Anything that is exposed as public API should have unit tests.
|
||||
|
||||
#### When to avoid
|
||||
|
||||
You're actually testing implementation details. You're testing implementation
|
||||
details if:
|
||||
|
||||
- Your test does something that the consumer of your code would never do.
|
||||
- IE. Using a private function
|
||||
- A refactor can break your tests
|
||||
|
||||
### Integration Tests
|
||||
|
||||
We write integration tests to gain confidence that several units work together.
|
||||
Generally, we want to mock as little as possible for these tests. In practice,
|
||||
this means only mocking network requests.
|
||||
|
||||
#### When to use
|
||||
|
||||
...
|
||||
|
||||
### End-to-End Tests
|
||||
|
||||
These are the most expensive tests to write and maintain. Largely because, when
|
||||
they fail, they have the largest number of potential points of failure. So why
|
||||
do we write them? Because they also buy us the most confidence.
|
||||
|
||||
#### When to use
|
||||
|
||||
Mission critical features and functionality, or to cover a large breadth of
|
||||
functionality until unit tests catch up. Unsure if we should have a test for
|
||||
feature `X` or scenario `Y`? Open an issue and let's discuss.
|
||||
|
||||
## Summary
|
||||
|
||||
- Does your test increase confidence?
|
||||
- Does the test type chosen balance the cost-to-confidence ratio?
|
||||
|
||||
## Further Reading
|
||||
|
||||
### General
|
||||
|
||||
- [Assert(js) Conf 2018 Talks][assert-js-talks]
|
||||
- [Write tests. Not too many. Mostly integration.][kent-talk] - Kent C. Dodds
|
||||
- [I see your point, but…][gleb-talk] - Gleb Bahmutov
|
||||
- [Static vs Unit vs Integration vs E2E Testing][kent-blog] - Kent C. Dodds
|
||||
(Blog)
|
||||
|
||||
### End-to-end Testing w/ Cypress
|
||||
|
||||
- [Getting Started](https://docs.cypress.io/guides/overview/why-cypress.html)
|
||||
- Be sure to check out `Getting Started` and `Core Concepts`
|
||||
- [Best Practices](https://docs.cypress.io/guides/references/best-practices.html)
|
||||
- [Example Recipes](https://docs.cypress.io/examples/examples/recipes.html)
|
||||
|
||||
## Testing Dorito
|
||||
|
||||
[![testing dorito][testing-dorito-img]][testing-dorito]
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[eslint-rules]: https://eslint.org/docs/rules/
|
||||
[typescript-docs]: https://www.typescriptlang.org/docs/home.html
|
||||
[flow-org]: https://flow.org/
|
||||
<!-- Talks -->
|
||||
[assert-js-talks]: https://www.youtube.com/playlist?list=PLZ66c9_z3umNSrKSb5cmpxdXZcIPNvKGw
|
||||
[kent-talk]: https://www.youtube.com/watch?list=PLV5CVI1eNcJgNqzNwcs4UKrlJdhfDjshf
|
||||
[gleb-talk]: https://www.youtube.com/watch?v=5FnalKRjpZk
|
||||
[kent-blog]: https://kentcdodds.com/blog/unit-vs-integration-vs-e2e-tests
|
||||
<!-- Images -->
|
||||
[testing-trophy]: https://twitter.com/kentcdodds/status/960723172591992832?ref_src=twsrc%5Etfw%7Ctwcamp%5Etweetembed%7Ctwterm%5E960723172591992832&ref_url=https%3A%2F%2Fkentcdodds.com%2Fblog%2Fwrite-tests
|
||||
[aaron-square]: https://twitter.com/Carofine247/status/966727489274961920
|
||||
[gleb-pyramid]: https://twitter.com/Carofine247/status/966764532046684160/photo/3
|
||||
[testing-pyramid]: https://dojo.ministryoftesting.com/dojo/lessons/the-mobile-test-pyramid
|
||||
[testing-dorito]: https://twitter.com/denvercoder/status/960752578198843392
|
||||
[testing-dorito-img]: https://pbs.twimg.com/media/DVVHXycUMAAcN-F?format=jpg&name=4096x4096
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -1,56 +0,0 @@
|
||||
# Configuration
|
||||
|
||||
> This step assumes you have an imaging archive. If you need assistance setting
|
||||
> one up, check out the [`Data Source` Guide](./data-source.md) or a deployment
|
||||
> recipe that contains an open source Image Archive
|
||||
|
||||
## How it Works
|
||||
|
||||
The configuration for our project is in the `/public/config` directory. Our
|
||||
build process knows which configuration file to use based on the
|
||||
`REACT_APP_CONFIG` environment variable. By default, its value is
|
||||
[`default.js`](https://github.com/OHIF/Viewers/blob/react/public/config/default.js).
|
||||
When we build, the `%REACT_APP_CONFIG%` value in
|
||||
our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/react/public/index.html#L12-L15)
|
||||
file is substituted for the correct configuration file's name. This sets the
|
||||
`window.config` equal to our configuration file's value.
|
||||
|
||||
## How do I configure my project?
|
||||
|
||||
The simplest way is to update the existing default config:
|
||||
|
||||
_/public/config/default.js_
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
name: 'DCM4CHEE',
|
||||
wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
|
||||
qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
|
||||
qidoSupportsIncludeField: true,
|
||||
imageRendering: 'wadors',
|
||||
thumbnailRendering: 'wadors',
|
||||
requestOptions: {
|
||||
requestFromBrowser: true,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
}
|
||||
```
|
||||
|
||||
You can also create a new config file and specify its path relative to the build
|
||||
output's root by setting the `REACT_APP_CONFIG` environment variable. You can
|
||||
set the value of this environment variable a few different ways:
|
||||
|
||||
- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
|
||||
- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
|
||||
- Using the `cross-env` package in an npm script:
|
||||
- `"build": "cross-env REACT_APP_CONFIG=config/my-config.js react-scripts build"`
|
||||
|
||||
After updating the configuration, `yarn run build:web` to generate updated build
|
||||
output.
|
||||
@@ -1,42 +0,0 @@
|
||||
# Installation
|
||||
|
||||
It's important to know that the OHIF Viewer project provides two different build
|
||||
processes:
|
||||
|
||||
```bash
|
||||
# Static Asset output: For deploying PWAs
|
||||
yarn run build:web
|
||||
|
||||
# Single `.js` script, for embedding viewer into existing apps
|
||||
yarn run build:package
|
||||
```
|
||||
|
||||
## create-react-app (PWA)
|
||||
|
||||
> [create-react-app](https://github.com/facebook/create-react-app) provides
|
||||
> pre-configured build process for developing front-end applications with
|
||||
> [React](https://reactjs.org/).
|
||||
|
||||
The ohif-viewer package can be run as a create-react-app application. This is
|
||||
useful for development, debugging, or evolving the OHIF Viewer into your own
|
||||
custom imaging application.
|
||||
|
||||
You can read more about this particular strategy in our
|
||||
[Build for Production Deployment Guide](./../deployment/recipes/build-for-production.md)
|
||||
|
||||
## Rollup (Packaged Script)
|
||||
|
||||
> [Rollup](https://rollupjs.org/guide/en) is a module bundler for JavaScript. It
|
||||
> uses the new standardized format for code modules included in the ES6 revision
|
||||
> of JavaScript.
|
||||
|
||||
The [ohif-viewer](https://www.npmjs.com/package/ohif-viewer) package can be
|
||||
built with Rollup to provide a set of React components which can be dropped into
|
||||
a larger application. Specifically, the ohif-viewer package provides a React
|
||||
component named `OHIFViewer` which is the entire viewer, configurable via React
|
||||
`props`. This is useful for including the OHIF Viewer in a larger web
|
||||
application, as the entire application can be provided via a `<script>` tag with
|
||||
no build process required.
|
||||
|
||||
You can read more about this particular strategy in our
|
||||
[Embedded Viewer Deployment Guide](./../deployment/recipes/embedded-viewer.md)
|
||||
@@ -1,20 +0,0 @@
|
||||
# Troubleshooting
|
||||
|
||||
Common GitHub issues that are not easily remedied with cleaner code or
|
||||
documentation will be recorded here. Please feel free to make PRs to update this
|
||||
page.
|
||||
|
||||
## Common Problems
|
||||
|
||||
| Problem | Most Common Reasons |
|
||||
| -------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
||||
| ** Can't retrieve Study List over DICOMWeb** | 1. QIDO root URL is incorrect<br> 2. DICOM Web is not enabled on PACS |
|
||||
| ** Can't retrieve images** | 1. WADO Root URL is incorrect<br> 2. DICOM Web is not enabled on PACS<br> 3. HTTP Basic Authentication username and password are incorrect or not provided. |
|
||||
|
||||
## Debugging Steps
|
||||
|
||||
### Can't retrieve Study List over DICOMWeb
|
||||
|
||||
1. Check that you can query your PACS using an alternative DICOM Web client
|
||||
(e.g. cURL, or a Web Browser). If you cannot, then your PACS is configured
|
||||
incorrectly. Refer to the documentation of the image archive.
|
||||
@@ -10,7 +10,7 @@
|
||||
<!-- CORNERSTONE.js -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/ohif-cornerstone-extension">
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-cornerstone">
|
||||
Cornerstone
|
||||
</a>
|
||||
</td>
|
||||
@@ -22,7 +22,7 @@
|
||||
<!-- VTK.js -->
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/ohif-vtk-extension">
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-vtk">
|
||||
VTK.js
|
||||
</a>
|
||||
</td>
|
||||
@@ -33,30 +33,30 @@
|
||||
</tr>
|
||||
<tr>
|
||||
<td>
|
||||
<a href="">HTML</a>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-html">DICOM HTML</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders text and HTML content for <a href="https://github.com/OHIF/Viewers/blob/react/extensions/ohif-dicom-html-extension/src/OHIFDicomHtmlSopClassHandler.js#L7-L15">specific SopClassUIDs</a>.
|
||||
Renders text and HTML content for <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-html/src/OHIFDicomHtmlSopClassHandler.js#L4-L12">specific SopClassUIDs</a>.
|
||||
</td>
|
||||
<td>Viewport, SopClassHandler</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/ohif-dicom-pdf-extension">PDF</a>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-pdf">DICOM PDF</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders PDFs for a <a href="https://github.com/OHIF/Viewers/blob/react/extensions/ohif-dicom-pdf-extension/src/OHIFDicomPDFSopClassHandler.js#L8">specific SopClassUID</a>.
|
||||
Renders PDFs for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-pdf/src/OHIFDicomPDFSopClassHandler.js#L4-L6">specific SopClassUID</a>.
|
||||
</td>
|
||||
<td>Viewport, SopClassHandler</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>
|
||||
<a href="https://www.npmjs.com/package/ohif-dicom-microscopy-extension">Microscopy</a>
|
||||
<a href="https://www.npmjs.com/package/@ohif/extension-dicom-microscopy">DICOM Microscopy</a>
|
||||
</td>
|
||||
<td>
|
||||
Renders Microscopy images for a <a href="https://github.com/OHIF/Viewers/blob/react/extensions/ohif-dicom-microscopy-extension/src/DicomMicroscopySopClassHandler.js#L6">specific SopClassUID</a>.
|
||||
Renders Microscopy images for a <a href="https://github.com/OHIF/Viewers/blob/master/extensions/dicom-microscopy/src/DicomMicroscopySopClassHandler.js#L5-L7">specific SopClassUID</a>.
|
||||
</td>
|
||||
<td>Viewport, SopClassHandler</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
</table>
|
||||
@@ -0,0 +1,153 @@
|
||||
# Extensions
|
||||
|
||||
- [Overview](#overview)
|
||||
- [Concepts](#concepts)
|
||||
- [Extension Skeleton](#extension-skeleton)
|
||||
- [Registering an Extension](#registering-an-extension)
|
||||
- [Lifecylce Hooks](#lifecycle-hooks)
|
||||
- [Modules](#modules)
|
||||
- [Contexts](#contexts)
|
||||
- [Consuming Extensions](#consuming-extensions)
|
||||
- [Maintained Extensions](#maintained-extensions)
|
||||
|
||||
## Overview
|
||||
|
||||
We use extensions to help us isolate and package groups of related features.
|
||||
Extensions provide functionality, ui components, and new behaviors.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/extensions-diagram.png">
|
||||
<img src="/assets/img/extensions-diagram.png" alt="Extensions Diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Diagram showing how extensions are configured and accessed.</i></div>
|
||||
</div>
|
||||
|
||||
The `@ohif/viewer`'s application level configuration gives us the ability to add
|
||||
and configure extensions. When the application starts, extensions are registered
|
||||
with the `ExtensionManager`. Different portions of the `@ohif/viewer` project
|
||||
will use registered extensions to influence application behavior.
|
||||
|
||||
Extensions allow us to:
|
||||
|
||||
- Wrap and integrate functionality of 3rd party dependencies in a reusable way
|
||||
- Change how application data is mapped and transformed
|
||||
- Display a consistent/cohesive UI
|
||||
- Inject custom components to override built-in components
|
||||
|
||||
Practical examples of extensions include:
|
||||
|
||||
- A set of segmentation tools that build on top of the `cornerstone` viewport
|
||||
- Showing ML/AI report summaries for the selected study/series/image
|
||||
- Support for parsing DICOM structured reports and displaying them in a user
|
||||
friendly way
|
||||
- [See our maintained extensions for more examples of what's possible](#maintained-extensions)
|
||||
|
||||
## Concepts
|
||||
|
||||
### Extension Skeleton
|
||||
|
||||
An extension is a plain JavaScript object has an `id` property, and one or more
|
||||
"getModuleFunctions" and/or lifecycle hooks. You can read more about
|
||||
[lifecycle hooks](#lifecycle-hooks) and [modules](#modules) further down.
|
||||
|
||||
```js
|
||||
// prettier-ignore
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'example-extension',
|
||||
|
||||
// Lifecyle
|
||||
preRegistration() { /* */ },
|
||||
// Modules
|
||||
getCommandsModule() { /* */ },
|
||||
getToolbarModule() { /* */ },
|
||||
getPanelModule() { /* */ },
|
||||
getSopClassHandler() { /* */ },
|
||||
getViewportModule() { /* */ },
|
||||
}
|
||||
```
|
||||
|
||||
### Registering an Extension
|
||||
|
||||
There are two different ways to register and configure extensions: At
|
||||
[runtime](#runtime-extensions) and at [build time](#bundled-extensions).
|
||||
|
||||
You can leverage one or both strategies. Which one(s) you choose depend on your
|
||||
application's requirements. Each [module](#modules) defined by the extension
|
||||
becomes available to the core application via the `ExtensionManager`.
|
||||
|
||||
```js
|
||||
// prettier-ignore
|
||||
const config = {
|
||||
extensions: [
|
||||
MyFirstExtension,
|
||||
[
|
||||
MySecondExtension,
|
||||
{ /* MySecondExtensions Configuration */ },
|
||||
],
|
||||
];
|
||||
}
|
||||
```
|
||||
|
||||
#### Runtime Extensions
|
||||
|
||||
The `@ohif/viewer` uses a [configuration file](#) at startup. The schema for
|
||||
that file includes an `Extensions` key that supports an array of extensions to
|
||||
register.
|
||||
|
||||
#### Bundled Extensions
|
||||
|
||||
The `@ohif/viewer` works best when built as a "Progressive Web Application"
|
||||
(PWA). If you know the extensions your application will need, you can specify
|
||||
them at "build time" to leverage some advantaged afforded to us by modern
|
||||
tooling:
|
||||
|
||||
- Code Splitting
|
||||
- Tree Shaking
|
||||
- Dependency deduplication
|
||||
|
||||
You can update the list of bundled extensions by:
|
||||
|
||||
1. Having your `@ohif/viewer` project depend on the extension
|
||||
2. Importing and adding it to the list of extensions in the
|
||||
`<repo-root>/platform/src/index.js` entrypoint.
|
||||
|
||||
### Lifecycle Hooks
|
||||
|
||||
...
|
||||
|
||||
### Modules
|
||||
|
||||
There are a few different module types. Each module type allows us to extend the
|
||||
viewer in a different way, and provides a consistent API for us to do so. You
|
||||
can find a full list of the different types of modules
|
||||
[`in ohif-core`][module-types]. Information on each type of module, it's API,
|
||||
and how we determine when/where it should be used is included below.
|
||||
|
||||
### Contexts
|
||||
|
||||
...
|
||||
|
||||
## Consuming Extensions
|
||||
|
||||
...
|
||||
|
||||
## Maintained Extensions
|
||||
|
||||
A small number of powerful extensions for popular use cases are maintained by
|
||||
OHIF. They're co-located in the [`OHIF/Viewers`][viewers-repo] repository, in
|
||||
the top level [`extensions/`][ext-source] directory.
|
||||
|
||||
{% include "./_maintained-extensions-table.md" %}
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[viewers-repo]: https://github.com/OHIF/Viewers
|
||||
[ext-source]: https://github.com/OHIF/Viewers/tree/master/extensions
|
||||
[module-types]: https://github.com/OHIF/Viewers/blob/master/platform/core/src/extensions/MODULE_TYPES.js
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -0,0 +1,21 @@
|
||||
# Lifecylce Hook: preRegistration
|
||||
|
||||
If an extension defines the `preRegistration` lifecycle hook, it is called
|
||||
before any modules are registered to the `ExtensionManager`.
|
||||
|
||||
```js
|
||||
export default {
|
||||
id: 'MyExampleExtension',
|
||||
|
||||
preRegistration({ servicesManager, commandsManager, configuration }) {
|
||||
console.log('Wiring up important stuff.');
|
||||
|
||||
window.importantStuff = () => {
|
||||
console.log(configuration);
|
||||
};
|
||||
|
||||
console.log('Important stuff has been wired.');
|
||||
window.importantStuff();
|
||||
},
|
||||
};
|
||||
```
|
||||
@@ -0,0 +1,34 @@
|
||||
# Module: Commands
|
||||
|
||||
The Commands Module allows us to register one or more commands scoped to
|
||||
specific contexts. Commands can be run by [hotkeys][#], [toolbar buttons][#],
|
||||
and any registered custom react component (like a [viewport][#] or [panel][#]).
|
||||
Here is a simple example commands module:
|
||||
|
||||
```js
|
||||
{
|
||||
getCommandsModule() {
|
||||
return {
|
||||
actions: {
|
||||
speak: ({ viewports, words }) => {
|
||||
console.log(viewports, words);
|
||||
},
|
||||
},
|
||||
definitions: {
|
||||
rotateViewportCW: {
|
||||
commandFn: actions.rotateViewport,
|
||||
storeContexts: ['viewports'],
|
||||
options: { rotation: 90 }
|
||||
},
|
||||
rotateViewportCCW: {
|
||||
commandFn: actions.rotateViewport,
|
||||
storeContexts: ['viewports'],
|
||||
options: { rotation: -90 },
|
||||
context: 'ACTIVE_VIEWER::CORNERSTONE'
|
||||
},
|
||||
},
|
||||
defaultContext: 'VIEWER'
|
||||
}
|
||||
}
|
||||
}
|
||||
```
|
||||
@@ -0,0 +1,3 @@
|
||||
# Module: Panel
|
||||
|
||||
...
|
||||