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v3.7.0-beta.73
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v3.8.2
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No files matched your search
+216
-166
@@ -13,22 +13,24 @@ version: 2.1
|
||||
##
|
||||
orbs:
|
||||
codecov: codecov/codecov@1.0.5
|
||||
cypress: cypress-io/cypress@1.26.0
|
||||
cypress: cypress-io/cypress@3.3.1
|
||||
|
||||
executors:
|
||||
# Custom executor to override Cypress config
|
||||
deploy-to-prod-executor:
|
||||
cypress-custom:
|
||||
description: |
|
||||
Single Docker container used to run Cypress Tests
|
||||
docker:
|
||||
- image: cimg/node:16.14
|
||||
environment:
|
||||
CYPRESS_BASE_URL: https://ohif-staging.netlify.com/
|
||||
chrome-and-pacs:
|
||||
docker:
|
||||
# Primary container image where all steps run.
|
||||
- image: 'cypress/browsers:node16.14.2-slim-chrome103-ff102'
|
||||
- image: cimg/node:<< parameters.node-version >>-browsers
|
||||
parameters:
|
||||
node-version:
|
||||
default: '18.16.1'
|
||||
description: |
|
||||
The version of Node to run your tests with.
|
||||
type: string
|
||||
|
||||
defaults: &defaults
|
||||
docker:
|
||||
- image: cimg/node:16.14-browsers
|
||||
- image: cimg/node:18.18
|
||||
environment:
|
||||
TERM: xterm # Enable colors in term
|
||||
QUICK_BUILD: true
|
||||
@@ -43,6 +45,7 @@ jobs:
|
||||
steps:
|
||||
# Update yarn
|
||||
- run: yarn -v
|
||||
- run: node --version
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- restore_cache:
|
||||
@@ -90,43 +93,6 @@ jobs:
|
||||
file: '/home/circleci/repo/platform/core/coverage/reports'
|
||||
flags: 'core'
|
||||
|
||||
###
|
||||
# Workflow: PR_OPTIONAL_DOCKER_PUBLISH
|
||||
###
|
||||
DOCKER_PR_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Enable yarn workspaces
|
||||
- run: yarn config set workspaces-experimental true
|
||||
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
|
||||
- run:
|
||||
name: Build and push Docker image
|
||||
command: |
|
||||
# Remove npm config
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
echo $CIRCLE_BUILD_NUM
|
||||
# Build our image, auth, and push
|
||||
docker build --tag ohif/app:PR_BUILD-$CIRCLE_BUILD_NUM .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:PR_BUILD-$CIRCLE_BUILD_NUM
|
||||
|
||||
###
|
||||
# Workflow: DEPLOY
|
||||
###
|
||||
@@ -177,62 +143,52 @@ jobs:
|
||||
- commit.txt
|
||||
- version.json
|
||||
|
||||
# DEPLOY_TO_DEV:
|
||||
# docker:
|
||||
# - image: circleci/node:16.14.0
|
||||
# environment:
|
||||
# TERM: xterm
|
||||
# NETLIFY_SITE_ID: 32708787-c9b0-4634-b50f-7ca41952da77
|
||||
# working_directory: ~/repo
|
||||
# steps:
|
||||
# - attach_workspace:
|
||||
# at: ~/repo
|
||||
# - run: cd .netlify && npm install
|
||||
# - run: cp .netlify/deploy-workflow/_redirects platform/app/dist/_redirects
|
||||
# - run: cd .netlify && npm run deploy
|
||||
|
||||
# DEPLOY_TO_STAGING:
|
||||
# docker:
|
||||
# - image: circleci/node:16.14.0
|
||||
# environment:
|
||||
# TERM: xterm
|
||||
# NETLIFY_SITE_ID: c7502ae3-b150-493c-8422-05701e44a969
|
||||
# working_directory: ~/repo
|
||||
# steps:
|
||||
# - attach_workspace:
|
||||
# at: ~/repo
|
||||
# - run: cd .netlify && npm install
|
||||
# - run: cp .netlify/deploy-workflow/_redirects platform/app/dist/_redirects
|
||||
# - run: cd .netlify && npm run deploy
|
||||
|
||||
# DEPLOY_TO_PRODUCTION:
|
||||
# docker:
|
||||
# - image: circleci/node:16.14.0
|
||||
# environment:
|
||||
# TERM: xterm
|
||||
# NETLIFY_SITE_ID: 79c4a5da-5c95-4dc9-84f7-45fd9dfe21b0
|
||||
# working_directory: ~/repo
|
||||
# steps:
|
||||
# - attach_workspace:
|
||||
# at: ~/repo
|
||||
# - run: cd .netlify && npm install
|
||||
# - run: cp .netlify/deploy-workflow/_redirects platform/app/dist/_redirects
|
||||
# - run: cd .netlify && npm run deploy
|
||||
|
||||
# DEPLOY_TO_RELEASE_DEV:
|
||||
# docker:
|
||||
# - image: circleci/node:16.14.0
|
||||
# environment:
|
||||
# TERM: xterm
|
||||
# NETLIFY_SITE_ID: 3270878-22
|
||||
# working_directory: ~/repo
|
||||
# steps:
|
||||
# - attach_workspace:
|
||||
# at: ~/repo
|
||||
# - run: cd .netlify && npm install
|
||||
# - run:
|
||||
# cp .netlify/deploy-workflow/_redirects platform/app/dist/_redirects
|
||||
# - run: cd .netlify && npm run deploy
|
||||
# just to make sure later on we can publish them
|
||||
BUILD_PACKAGES_QUICK:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- run: yarn -v
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command: |
|
||||
rm -rf ~/.ssh
|
||||
mkdir ~/.ssh/
|
||||
echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
|
||||
git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
git config --global user.name "ohif-bot"
|
||||
- run:
|
||||
name: Authenticate with NPM registry
|
||||
command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run:
|
||||
name: Increase the event emitter limit
|
||||
command: |
|
||||
node ./increaseEventEmitterLimit.mjs
|
||||
- run:
|
||||
name: build half of the packages (to avoid out of memory in circleci)
|
||||
command: |
|
||||
yarn run build:package-all
|
||||
- run:
|
||||
name: build the other half of the packages
|
||||
command: |
|
||||
yarn run build:package-all-1
|
||||
|
||||
###
|
||||
# Workflow: RELEASE
|
||||
@@ -282,6 +238,14 @@ jobs:
|
||||
name: build the other half of the packages
|
||||
command: |
|
||||
yarn run build:package-all-1
|
||||
- run:
|
||||
name: increase min time out
|
||||
command: |
|
||||
npm config set fetch-retry-mintimeout 20000
|
||||
- run:
|
||||
name: increase max time out
|
||||
command: |
|
||||
npm config set fetch-retry-maxtimeout 120000
|
||||
- run:
|
||||
name: publish package versions
|
||||
command: |
|
||||
@@ -362,71 +326,152 @@ jobs:
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL
|
||||
fi
|
||||
|
||||
workflows:
|
||||
version: 2
|
||||
# This is copied from the Cypress orb since the default for cypress/run is node 16 and
|
||||
# we migrated to 18
|
||||
CYPRESS_CUSTOM_RUN:
|
||||
description: |
|
||||
A single, complete job to run Cypress end-to-end tests in your application.
|
||||
executor: cypress-custom
|
||||
parallelism: << parameters.parallelism >>
|
||||
parameters:
|
||||
cypress-cache-key:
|
||||
default: cypress-cache-{{ arch }}-{{ checksum "package.json" }}
|
||||
description: Cache key used to cache the Cypress binary.
|
||||
type: string
|
||||
cypress-cache-path:
|
||||
default: ~/.cache/Cypress
|
||||
description: |
|
||||
By default, this will cache the '~/.cache/Cypress' directory so that the Cypress binary is cached. You can override this by providing your own cache path.
|
||||
type: string
|
||||
cypress-command:
|
||||
default: npx cypress run
|
||||
description: Command used to run your Cypress tests
|
||||
type: string
|
||||
include-branch-in-node-cache-key:
|
||||
default: false
|
||||
description: |
|
||||
If true, this cache will only apply to runs within the same branch. (Adds -{{ .Branch }}- to the node cache key)
|
||||
type: boolean
|
||||
install-browsers:
|
||||
default: false
|
||||
description: |
|
||||
Cypress runs by default in the Electron browser. Use this flag to install additional browsers to run your tests in.
|
||||
This is only needed if you are passing the `--browser` flag in your `cypress-command`.
|
||||
This parameter leverages the `circleci/browser-tools` orb and includes Chrome and FireFox.
|
||||
If you need additional browser support you can set this to false and use an executor with a docker image
|
||||
that includes the browsers of your choosing. See https://hub.docker.com/r/cypress/browsers/tags
|
||||
type: boolean
|
||||
install-command:
|
||||
default: ''
|
||||
description: Overrides the default NPM command (npm ci)
|
||||
type: string
|
||||
node-cache-version:
|
||||
default: v1
|
||||
description:
|
||||
Change the default node cache version if you need to clear the cache for any reason.
|
||||
type: string
|
||||
package-manager:
|
||||
default: npm
|
||||
description: Select the default node package manager to use. NPM v5+ Required.
|
||||
enum:
|
||||
- npm
|
||||
- yarn
|
||||
- yarn-berry
|
||||
type: enum
|
||||
parallelism:
|
||||
default: 1
|
||||
description: |
|
||||
Number of Circle machines to use for load balancing, min 1
|
||||
(requires `parallel` and `record` flags in your `cypress-command`)
|
||||
type: integer
|
||||
post-install:
|
||||
default: ''
|
||||
description: |
|
||||
Additional commands to run after running install but before verifying Cypress and saving cache.
|
||||
type: string
|
||||
start-command:
|
||||
default: ''
|
||||
description: Command used to start your local dev server for Cypress to tests against
|
||||
type: string
|
||||
working-directory:
|
||||
default: ''
|
||||
description: Directory containing package.json
|
||||
type: string
|
||||
steps:
|
||||
- cypress/install:
|
||||
cypress-cache-key: << parameters.cypress-cache-key >>
|
||||
cypress-cache-path: << parameters.cypress-cache-path >>
|
||||
include-branch-in-node-cache-key: << parameters.include-branch-in-node-cache-key >>
|
||||
install-browsers: << parameters.install-browsers >>
|
||||
install-command: << parameters.install-command >>
|
||||
node-cache-version: << parameters.node-cache-version >>
|
||||
package-manager: << parameters.package-manager >>
|
||||
post-install: << parameters.post-install >>
|
||||
working-directory: << parameters.working-directory >>
|
||||
- cypress/run-tests:
|
||||
cypress-command: << parameters.cypress-command >>
|
||||
start-command: << parameters.start-command >>
|
||||
working-directory: << parameters.working-directory >>
|
||||
|
||||
workflows:
|
||||
PR_CHECKS:
|
||||
jobs:
|
||||
- UNIT_TESTS
|
||||
|
||||
# E2E: PWA
|
||||
- cypress/run:
|
||||
name: 'E2E: PWA'
|
||||
executor: chrome-and-pacs
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: |
|
||||
# Clear yarn cache; use yarn from image (update image to update yarn)
|
||||
rm -rf ~/.yarn
|
||||
yarn -v
|
||||
yarn: true
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/app
|
||||
build: yarn test:data
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/app/cypress/screenshots
|
||||
- store_artifacts:
|
||||
path: platform/app/cypress/videos
|
||||
- store_test_results:
|
||||
path: platform/app/cypress/results
|
||||
- BUILD_PACKAGES_QUICK:
|
||||
filters:
|
||||
branches:
|
||||
ignore: master
|
||||
- UNIT_TESTS:
|
||||
requires:
|
||||
- UNIT_TESTS
|
||||
|
||||
PR_OPTIONAL_VISUAL_TESTS:
|
||||
jobs:
|
||||
- AWAIT_APPROVAL:
|
||||
type: approval
|
||||
# Update hub.docker.org
|
||||
- cypress/run:
|
||||
name: 'Generate Percy Snapshots'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && yarn -v && yarn global add wait-on'
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/app
|
||||
build:
|
||||
yarn test:data && npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/app/cypress/screenshots
|
||||
- store_artifacts:
|
||||
path: platform/app/cypress/videos
|
||||
- BUILD_PACKAGES_QUICK
|
||||
- CYPRESS_CUSTOM_RUN:
|
||||
name: 'Cypress Tests'
|
||||
context: cypress
|
||||
matrix:
|
||||
parameters:
|
||||
start-command:
|
||||
- yarn run test:data && yarn run test:e2e:serve
|
||||
install-browsers:
|
||||
- true
|
||||
cypress-command:
|
||||
- 'npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run
|
||||
--record --browser chrome --parallel'
|
||||
package-manager:
|
||||
- 'yarn'
|
||||
cypress-cache-key:
|
||||
- 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
cypress-cache-path:
|
||||
- '~/.cache/Cypress'
|
||||
requires:
|
||||
- AWAIT_APPROVAL
|
||||
- BUILD_PACKAGES_QUICK
|
||||
|
||||
# PR_OPTIONAL_VISUAL_TESTS:
|
||||
# jobs:
|
||||
# - AWAIT_APPROVAL:
|
||||
# type: approval
|
||||
# # Update hub.docker.org
|
||||
# - cypress/run:
|
||||
# name: 'Generate Percy Snapshots'
|
||||
# executor: cypress/browsers-chrome76
|
||||
# browser: chrome
|
||||
# pre-steps:
|
||||
# - run: 'rm -rf ~/.yarn && yarn -v && yarn global add wait-on'
|
||||
# yarn: true
|
||||
# store_artifacts: false
|
||||
# working_directory: platform/app
|
||||
# build:
|
||||
# yarn test:data && npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
# yarn run build
|
||||
# # start server --> verify running --> percy + chrome + cypress
|
||||
# command: yarn run test:e2e:dist
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# no-workspace: true # Don't persist workspace
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/screenshots
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/videos
|
||||
# requires:
|
||||
# - AWAIT_APPROVAL
|
||||
|
||||
# Our master branch deploys to viewer-dev.ohif.org, the viewer.ohif.org is
|
||||
# deployed from the release branch which is more stable and less frequently updated.
|
||||
@@ -450,13 +495,18 @@ workflows:
|
||||
- BUILD:
|
||||
filters:
|
||||
branches:
|
||||
only: release
|
||||
- NPM_PUBLISH:
|
||||
only: /^release\/.*/
|
||||
- HOLD_FOR_APPROVAL:
|
||||
type: approval
|
||||
requires:
|
||||
- BUILD
|
||||
- NPM_PUBLISH:
|
||||
requires:
|
||||
- HOLD_FOR_APPROVAL
|
||||
- DOCKER_RELEASE_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
|
||||
###
|
||||
# Unit and E2E tests have already run for PR_CHECKS
|
||||
# Re-running should not gain us any confidence here
|
||||
|
||||
@@ -1,25 +0,0 @@
|
||||
# ABOUT:
|
||||
# https://docs.codecov.io/docs/codecov-yaml
|
||||
#
|
||||
#
|
||||
# COMMIT STATUS:
|
||||
# https://docs.codecov.io/docs/commit-status
|
||||
coverage:
|
||||
status:
|
||||
project:
|
||||
default:
|
||||
threshold: 0.5%
|
||||
core:
|
||||
flags: core
|
||||
threshold: 0.5%
|
||||
viewer:
|
||||
flags: viewer
|
||||
threshold: 0.5%
|
||||
patch: off
|
||||
flags:
|
||||
core:
|
||||
paths:
|
||||
- platform/core
|
||||
viewer:
|
||||
paths:
|
||||
- platform/app
|
||||
@@ -1,48 +0,0 @@
|
||||
worker_processes 1;
|
||||
|
||||
events { worker_connections 1024; }
|
||||
|
||||
http {
|
||||
|
||||
upstream orthanc-server {
|
||||
server orthanc:8042;
|
||||
}
|
||||
|
||||
server {
|
||||
listen [::]:80 default_server;
|
||||
listen 80;
|
||||
|
||||
# CORS Magic
|
||||
add_header 'Access-Control-Allow-Origin' '*';
|
||||
add_header 'Access-Control-Allow_Credentials' 'true';
|
||||
add_header 'Access-Control-Allow-Headers' 'Authorization,Accept,Origin,DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range';
|
||||
add_header 'Access-Control-Allow-Methods' 'GET,POST,OPTIONS,PUT,DELETE,PATCH';
|
||||
|
||||
location / {
|
||||
|
||||
if ($request_method = 'OPTIONS') {
|
||||
add_header 'Access-Control-Allow-Origin' '*';
|
||||
add_header 'Access-Control-Allow_Credentials' 'true';
|
||||
add_header 'Access-Control-Allow-Headers' 'Authorization,Accept,Origin,DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range';
|
||||
add_header 'Access-Control-Allow-Methods' 'GET,POST,OPTIONS,PUT,DELETE,PATCH';
|
||||
add_header 'Access-Control-Max-Age' 1728000;
|
||||
add_header 'Content-Type' 'text/plain charset=UTF-8';
|
||||
add_header 'Content-Length' 0;
|
||||
return 204;
|
||||
}
|
||||
|
||||
proxy_pass http://orthanc:8042;
|
||||
proxy_redirect off;
|
||||
proxy_set_header Host $host;
|
||||
proxy_set_header X-Real-IP $remote_addr;
|
||||
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
|
||||
proxy_set_header X-Forwarded-Host $server_name;
|
||||
|
||||
# CORS Magic
|
||||
add_header 'Access-Control-Allow-Origin' '*';
|
||||
add_header 'Access-Control-Allow_Credentials' 'true';
|
||||
add_header 'Access-Control-Allow-Headers' 'Authorization,Accept,Origin,DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range';
|
||||
add_header 'Access-Control-Allow-Methods' 'GET,POST,OPTIONS,PUT,DELETE,PATCH';
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1,89 +0,0 @@
|
||||
{
|
||||
"Name": "Orthanc inside Docker",
|
||||
"StorageDirectory": "/var/lib/orthanc/db",
|
||||
"IndexDirectory": "/var/lib/orthanc/db",
|
||||
"StorageCompression": false,
|
||||
"MaximumStorageSize": 0,
|
||||
"MaximumPatientCount": 0,
|
||||
"LuaScripts": [],
|
||||
"Plugins": ["/usr/share/orthanc/plugins", "/usr/local/share/orthanc/plugins"],
|
||||
"ConcurrentJobs": 2,
|
||||
"HttpServerEnabled": true,
|
||||
"HttpPort": 8042,
|
||||
"HttpDescribeErrors": true,
|
||||
"HttpCompressionEnabled": true,
|
||||
"DicomServerEnabled": true,
|
||||
"DicomAet": "ORTHANC",
|
||||
"DicomCheckCalledAet": false,
|
||||
"DicomPort": 4242,
|
||||
"DefaultEncoding": "Latin1",
|
||||
"DeflatedTransferSyntaxAccepted": true,
|
||||
"JpegTransferSyntaxAccepted": true,
|
||||
"Jpeg2000TransferSyntaxAccepted": true,
|
||||
"JpegLosslessTransferSyntaxAccepted": true,
|
||||
"JpipTransferSyntaxAccepted": true,
|
||||
"Mpeg2TransferSyntaxAccepted": true,
|
||||
"RleTransferSyntaxAccepted": true,
|
||||
"UnknownSopClassAccepted": false,
|
||||
"DicomScpTimeout": 30,
|
||||
|
||||
"RemoteAccessAllowed": true,
|
||||
"SslEnabled": false,
|
||||
"SslCertificate": "certificate.pem",
|
||||
"AuthenticationEnabled": false,
|
||||
"RegisteredUsers": {
|
||||
"test": "test"
|
||||
},
|
||||
"DicomModalities": {},
|
||||
"DicomModalitiesInDatabase": false,
|
||||
"DicomAlwaysAllowEcho": true,
|
||||
"DicomAlwaysAllowStore": true,
|
||||
"DicomCheckModalityHost": false,
|
||||
"DicomScuTimeout": 10,
|
||||
"OrthancPeers": {},
|
||||
"OrthancPeersInDatabase": false,
|
||||
"HttpProxy": "",
|
||||
|
||||
"HttpVerbose": true,
|
||||
|
||||
"HttpTimeout": 10,
|
||||
"HttpsVerifyPeers": true,
|
||||
"HttpsCACertificates": "",
|
||||
"UserMetadata": {},
|
||||
"UserContentType": {},
|
||||
"StableAge": 60,
|
||||
"StrictAetComparison": false,
|
||||
"StoreMD5ForAttachments": true,
|
||||
"LimitFindResults": 0,
|
||||
"LimitFindInstances": 0,
|
||||
"LimitJobs": 10,
|
||||
"LogExportedResources": false,
|
||||
"KeepAlive": true,
|
||||
"TcpNoDelay": true,
|
||||
"HttpThreadsCount": 50,
|
||||
"StoreDicom": true,
|
||||
"DicomAssociationCloseDelay": 5,
|
||||
"QueryRetrieveSize": 10,
|
||||
"CaseSensitivePN": false,
|
||||
"LoadPrivateDictionary": true,
|
||||
"Dictionary": {},
|
||||
"SynchronousCMove": true,
|
||||
"JobsHistorySize": 10,
|
||||
"SaveJobs": true,
|
||||
"OverwriteInstances": false,
|
||||
"MediaArchiveSize": 1,
|
||||
"StorageAccessOnFind": "Always",
|
||||
"MetricsEnabled": true,
|
||||
|
||||
"DicomWeb": {
|
||||
"Enable": true,
|
||||
"Root": "/dicom-web/",
|
||||
"EnableWado": true,
|
||||
"WadoRoot": "/wado",
|
||||
"Host": "127.0.0.1",
|
||||
"Ssl": false,
|
||||
"StowMaxInstances": 10,
|
||||
"StowMaxSize": 10,
|
||||
"QidoCaseSensitive": false
|
||||
}
|
||||
}
|
||||
@@ -1,23 +0,0 @@
|
||||
version: '3.5'
|
||||
|
||||
services:
|
||||
orthanc:
|
||||
image: jodogne/orthanc-plugins:1.11.0
|
||||
hostname: orthanc
|
||||
volumes:
|
||||
# Config
|
||||
- ./config/orthanc.json:/etc/orthanc/orthanc.json:ro
|
||||
# Persist data
|
||||
- ./volumes/orthanc-db/:/var/lib/orthanc/db/
|
||||
ports:
|
||||
- '4242:4242' # DICOM
|
||||
- '8042:8042' # Web
|
||||
restart: unless-stopped
|
||||
nginx:
|
||||
image: nginx:latest
|
||||
volumes:
|
||||
- ./config/nginx.conf:/etc/nginx/nginx.conf
|
||||
ports:
|
||||
- '80:80' #ngnix proxy
|
||||
depends_on:
|
||||
- orthanc
|
||||
@@ -1,2 +0,0 @@
|
||||
*
|
||||
!.gitignore
|
||||
@@ -64,7 +64,7 @@ body:
|
||||
attributes:
|
||||
label: 'Node version'
|
||||
description: 'Your Node.js version.'
|
||||
placeholder: 'e.g., 16.14.0'
|
||||
placeholder: 'e.g., 18.16.1'
|
||||
validations:
|
||||
required: true
|
||||
- type: input
|
||||
|
||||
@@ -83,7 +83,7 @@ after the commits are squashed.
|
||||
#### Tested Environment
|
||||
|
||||
- [] OS: <!--[e.g. Windows 10, macOS 10.15.4]-->
|
||||
- [] Node version: <!--[e.g. 16.14.0]-->
|
||||
- [] Node version: <!--[e.g. 18.16.1]-->
|
||||
- [] Browser:
|
||||
<!--[e.g. Chrome 83.0.4103.116, Firefox 77.0.1, Safari 13.1.1]-->
|
||||
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
---
|
||||
name: Codespell
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [master]
|
||||
pull_request:
|
||||
branches: [master]
|
||||
|
||||
permissions:
|
||||
contents: read
|
||||
|
||||
jobs:
|
||||
codespell:
|
||||
name: Check for spelling errors
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v3
|
||||
- name: Codespell
|
||||
uses: codespell-project/actions-codespell@v2
|
||||
@@ -24,6 +24,7 @@ yarn-error.log
|
||||
.DS_Store
|
||||
.env
|
||||
*.code-workspace
|
||||
.directory
|
||||
|
||||
# Common Example Data Directories
|
||||
sampledata/
|
||||
@@ -43,3 +44,5 @@ platform/app/src/pluginImports.js
|
||||
platform/app/.recipes/Nginx-Dcm4Che/dcm4che/dcm4che-arc/*
|
||||
platform/app/.recipes/OpenResty-Orthanc/logs/*
|
||||
.vercel
|
||||
|
||||
.vs
|
||||
+1
-1
@@ -1 +1 @@
|
||||
16.14.0
|
||||
18.16.1
|
||||
@@ -0,0 +1,265 @@
|
||||
/*
|
||||
* This script uses nodejs to generate a JSON file from a DICOM study folder.
|
||||
* You need to have dcmjs installed in your project.
|
||||
* The JSON file can be used to load the study into the OHIF Viewer. You can get more detail
|
||||
* in the DICOM JSON Data source on docs.ohif.org
|
||||
*
|
||||
* Usage: node dicomStudyToJSONLaunch.js <studyFolder> <urlPrefix> <outputJSONPath>
|
||||
*
|
||||
* params:
|
||||
* - studyFolder: path to the study folder
|
||||
* - urlPrefix: prefix to the url that will be used to load the study into the viewer. For instance
|
||||
* we use https://ohif-assets.s3.us-east-2.amazonaws.com/dicom-json/data as the urlPrefix for the
|
||||
* example since the data is hosted on S3 and each study is in a folder. So the url in the generated
|
||||
* json file for the first instance of the first series of the first study will be
|
||||
* dicomweb:https://ohif-assets.s3.us-east-2.amazonaws.com/dicom-json/data/Series1/Instance1
|
||||
* - outputJSONPath: path to the output JSON file
|
||||
*/
|
||||
const dcmjs = require('dcmjs');
|
||||
const path = require('path');
|
||||
const fs = require('fs').promises;
|
||||
|
||||
const args = process.argv.slice(2);
|
||||
const [studyDirectory, urlPrefix, outputPath] = args;
|
||||
|
||||
if (args.length !== 3) {
|
||||
console.error('Usage: node dicomStudyToJSONLaunch.js <studyFolder> <urlPrefix> <outputJSONPath>');
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
const model = {
|
||||
studies: [],
|
||||
};
|
||||
|
||||
async function convertDICOMToJSON(studyDirectory, urlPrefix, outputPath) {
|
||||
try {
|
||||
const files = await recursiveReadDir(studyDirectory);
|
||||
console.debug('Processing...');
|
||||
|
||||
for (const file of files) {
|
||||
if (!file.includes('.DS_Store') && !file.includes('.xml')) {
|
||||
const arrayBuffer = await fs.readFile(file);
|
||||
const dicomDict = dcmjs.data.DicomMessage.readFile(arrayBuffer.buffer);
|
||||
const instance = dcmjs.data.DicomMetaDictionary.naturalizeDataset(dicomDict.dict);
|
||||
|
||||
instance.fileLocation = createImageId(file, urlPrefix, studyDirectory);
|
||||
processInstance(instance);
|
||||
}
|
||||
}
|
||||
|
||||
console.log('Successfully loaded data');
|
||||
|
||||
model.studies.forEach(study => {
|
||||
study.NumInstances = findInstancesNumber(study);
|
||||
study.Modalities = findModalities(study).join('/');
|
||||
});
|
||||
|
||||
await fs.writeFile(outputPath, JSON.stringify(model, null, 2));
|
||||
console.log('JSON saved');
|
||||
} catch (error) {
|
||||
console.error(error);
|
||||
}
|
||||
}
|
||||
|
||||
async function recursiveReadDir(dir) {
|
||||
let results = [];
|
||||
const list = await fs.readdir(dir);
|
||||
for (const file of list) {
|
||||
const filePath = path.resolve(dir, file);
|
||||
const stat = await fs.stat(filePath);
|
||||
if (stat.isDirectory()) {
|
||||
const res = await recursiveReadDir(filePath);
|
||||
results = results.concat(res);
|
||||
} else {
|
||||
results.push(filePath);
|
||||
}
|
||||
}
|
||||
return results;
|
||||
}
|
||||
|
||||
function createImageId(fileLocation, urlPrefix, studyDirectory) {
|
||||
const relativePath = path.relative(studyDirectory, fileLocation);
|
||||
const normalizedPath = path.normalize(relativePath).replace(/\\/g, '/');
|
||||
return `dicomweb:${urlPrefix}${normalizedPath}`;
|
||||
}
|
||||
|
||||
function processInstance(instance) {
|
||||
const { StudyInstanceUID, SeriesInstanceUID } = instance;
|
||||
let study = getStudy(StudyInstanceUID);
|
||||
|
||||
if (!study) {
|
||||
study = createStudyMetadata(StudyInstanceUID, instance);
|
||||
model.studies.push(study);
|
||||
}
|
||||
|
||||
let series = getSeries(StudyInstanceUID, SeriesInstanceUID);
|
||||
|
||||
if (!series) {
|
||||
series = createSeriesMetadata(instance);
|
||||
study.series.push(series);
|
||||
}
|
||||
|
||||
const instanceMetaData =
|
||||
instance.NumberOfFrames > 1
|
||||
? createInstanceMetaDataMultiFrame(instance)
|
||||
: createInstanceMetaData(instance);
|
||||
|
||||
series.instances.push(...[].concat(instanceMetaData));
|
||||
}
|
||||
|
||||
function getStudy(StudyInstanceUID) {
|
||||
return model.studies.find(study => study.StudyInstanceUID === StudyInstanceUID);
|
||||
}
|
||||
|
||||
function getSeries(StudyInstanceUID, SeriesInstanceUID) {
|
||||
const study = getStudy(StudyInstanceUID);
|
||||
return study
|
||||
? study.series.find(series => series.SeriesInstanceUID === SeriesInstanceUID)
|
||||
: undefined;
|
||||
}
|
||||
|
||||
const findInstancesNumber = study => {
|
||||
let numInstances = 0;
|
||||
study.series.forEach(aSeries => {
|
||||
numInstances = numInstances + aSeries.instances.length;
|
||||
});
|
||||
return numInstances;
|
||||
};
|
||||
|
||||
const findModalities = study => {
|
||||
let modalities = new Set();
|
||||
study.series.forEach(aSeries => {
|
||||
modalities.add(aSeries.Modality);
|
||||
});
|
||||
return Array.from(modalities);
|
||||
};
|
||||
|
||||
function createStudyMetadata(StudyInstanceUID, instance) {
|
||||
return {
|
||||
StudyInstanceUID,
|
||||
StudyDescription: instance.StudyDescription,
|
||||
StudyDate: instance.StudyDate,
|
||||
StudyTime: instance.StudyTime,
|
||||
PatientName: instance.PatientName,
|
||||
PatientID: instance.PatientID || '1234', // this is critical to have
|
||||
AccessionNumber: instance.AccessionNumber,
|
||||
PatientAge: instance.PatientAge,
|
||||
PatientSex: instance.PatientSex,
|
||||
PatientWeight: instance.PatientWeight,
|
||||
series: [],
|
||||
};
|
||||
}
|
||||
function createSeriesMetadata(instance) {
|
||||
return {
|
||||
SeriesInstanceUID: instance.SeriesInstanceUID,
|
||||
SeriesDescription: instance.SeriesDescription,
|
||||
SeriesNumber: instance.SeriesNumber,
|
||||
SeriesTime: instance.SeriesTime,
|
||||
Modality: instance.Modality,
|
||||
SliceThickness: instance.SliceThickness,
|
||||
instances: [],
|
||||
};
|
||||
}
|
||||
function commonMetaData(instance) {
|
||||
return {
|
||||
Columns: instance.Columns,
|
||||
Rows: instance.Rows,
|
||||
InstanceNumber: instance.InstanceNumber,
|
||||
SOPClassUID: instance.SOPClassUID,
|
||||
AcquisitionNumber: instance.AcquisitionNumber,
|
||||
PhotometricInterpretation: instance.PhotometricInterpretation,
|
||||
BitsAllocated: instance.BitsAllocated,
|
||||
BitsStored: instance.BitsStored,
|
||||
PixelRepresentation: instance.PixelRepresentation,
|
||||
SamplesPerPixel: instance.SamplesPerPixel,
|
||||
PixelSpacing: instance.PixelSpacing,
|
||||
HighBit: instance.HighBit,
|
||||
ImageOrientationPatient: instance.ImageOrientationPatient,
|
||||
ImagePositionPatient: instance.ImagePositionPatient,
|
||||
FrameOfReferenceUID: instance.FrameOfReferenceUID,
|
||||
ImageType: instance.ImageType,
|
||||
Modality: instance.Modality,
|
||||
SOPInstanceUID: instance.SOPInstanceUID,
|
||||
SeriesInstanceUID: instance.SeriesInstanceUID,
|
||||
StudyInstanceUID: instance.StudyInstanceUID,
|
||||
WindowCenter: instance.WindowCenter,
|
||||
WindowWidth: instance.WindowWidth,
|
||||
RescaleIntercept: instance.RescaleIntercept,
|
||||
RescaleSlope: instance.RescaleSlope,
|
||||
};
|
||||
}
|
||||
|
||||
function conditionalMetaData(instance) {
|
||||
return {
|
||||
...(instance.ConceptNameCodeSequence && {
|
||||
ConceptNameCodeSequence: instance.ConceptNameCodeSequence,
|
||||
}),
|
||||
...(instance.SeriesDate && { SeriesDate: instance.SeriesDate }),
|
||||
...(instance.ReferencedSeriesSequence && {
|
||||
ReferencedSeriesSequence: instance.ReferencedSeriesSequence,
|
||||
}),
|
||||
...(instance.SharedFunctionalGroupsSequence && {
|
||||
SharedFunctionalGroupsSequence: instance.SharedFunctionalGroupsSequence,
|
||||
}),
|
||||
...(instance.PerFrameFunctionalGroupsSequence && {
|
||||
PerFrameFunctionalGroupsSequence: instance.PerFrameFunctionalGroupsSequence,
|
||||
}),
|
||||
...(instance.ContentSequence && { ContentSequence: instance.ContentSequence }),
|
||||
...(instance.ContentTemplateSequence && {
|
||||
ContentTemplateSequence: instance.ContentTemplateSequence,
|
||||
}),
|
||||
...(instance.CurrentRequestedProcedureEvidenceSequence && {
|
||||
CurrentRequestedProcedureEvidenceSequence: instance.CurrentRequestedProcedureEvidenceSequence,
|
||||
}),
|
||||
...(instance.CodingSchemeIdentificationSequence && {
|
||||
CodingSchemeIdentificationSequence: instance.CodingSchemeIdentificationSequence,
|
||||
}),
|
||||
...(instance.RadiopharmaceuticalInformationSequence && {
|
||||
RadiopharmaceuticalInformationSequence: instance.RadiopharmaceuticalInformationSequence,
|
||||
}),
|
||||
...(instance.ROIContourSequence && {
|
||||
ROIContourSequence: instance.ROIContourSequence,
|
||||
}),
|
||||
...(instance.StructureSetROISequence && {
|
||||
StructureSetROISequence: instance.StructureSetROISequence,
|
||||
}),
|
||||
...(instance.ReferencedFrameOfReferenceSequence && {
|
||||
ReferencedFrameOfReferenceSequence: instance.ReferencedFrameOfReferenceSequence,
|
||||
}),
|
||||
...(instance.CorrectedImage && { CorrectedImage: instance.CorrectedImage }),
|
||||
...(instance.Units && { Units: instance.Units }),
|
||||
...(instance.DecayCorrection && { DecayCorrection: instance.DecayCorrection }),
|
||||
...(instance.AcquisitionDate && { AcquisitionDate: instance.AcquisitionDate }),
|
||||
...(instance.AcquisitionTime && { AcquisitionTime: instance.AcquisitionTime }),
|
||||
...(instance.PatientWeight && { PatientWeight: instance.PatientWeight }),
|
||||
...(instance.NumberOfFrames && { NumberOfFrames: instance.NumberOfFrames }),
|
||||
...(instance.FrameTime && { FrameTime: instance.FrameTime }),
|
||||
...(instance.EncapsulatedDocument && { EncapsulatedDocument: instance.EncapsulatedDocument }),
|
||||
...(instance.SequenceOfUltrasoundRegions && {
|
||||
SequenceOfUltrasoundRegions: instance.SequenceOfUltrasoundRegions,
|
||||
}),
|
||||
};
|
||||
}
|
||||
|
||||
function createInstanceMetaData(instance) {
|
||||
const metadata = {
|
||||
...commonMetaData(instance),
|
||||
...conditionalMetaData(instance),
|
||||
};
|
||||
return { metadata, url: instance.fileLocation };
|
||||
}
|
||||
|
||||
function createInstanceMetaDataMultiFrame(instance) {
|
||||
const instances = [];
|
||||
const commonData = commonMetaData(instance);
|
||||
const conditionalData = conditionalMetaData(instance);
|
||||
|
||||
for (let i = 1; i <= instance.NumberOfFrames; i++) {
|
||||
const metadata = { ...commonData, ...conditionalData };
|
||||
const result = { metadata, url: instance.fileLocation + `?frame=${i}` };
|
||||
instances.push(result);
|
||||
}
|
||||
return instances;
|
||||
}
|
||||
|
||||
convertDICOMToJSON(studyDirectory, urlPrefix, outputPath);
|
||||
Vendored
+1
-1
@@ -31,6 +31,6 @@
|
||||
"prettier.endOfLine": "lf",
|
||||
"workbench.colorCustomizations": {},
|
||||
"editor.codeActionsOnSave": {
|
||||
"source.fixAll.eslint": true
|
||||
"source.fixAll.eslint": "explicit"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,10 @@
|
||||
const stylusToJavaScript = {
|
||||
test: /\.styl$/,
|
||||
use: [
|
||||
{ loader: 'style-loader' }, // 3. Style nodes from JS Strings
|
||||
{ loader: 'css-loader' }, // 2. CSS to CommonJS
|
||||
{ loader: 'stylus-loader' }, // 1. Stylus to CSS
|
||||
],
|
||||
};
|
||||
|
||||
module.exports = stylusToJavaScript;
|
||||
+37
-15
@@ -18,6 +18,7 @@ const loadShadersRule = require('./rules/loadShaders.js');
|
||||
const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
|
||||
const transpileJavaScriptRule = require('./rules/transpileJavaScript.js');
|
||||
const cssToJavaScript = require('./rules/cssToJavaScript.js');
|
||||
const stylusToJavaScript = require('./rules/stylusToJavaScript.js');
|
||||
|
||||
// ~~ ENV VARS
|
||||
const NODE_ENV = process.env.NODE_ENV;
|
||||
@@ -32,6 +33,27 @@ const COMMIT_HASH = fs.readFileSync(path.join(__dirname, '../commit.txt'), 'utf8
|
||||
//
|
||||
dotenv.config();
|
||||
|
||||
const defineValues = {
|
||||
/* Application */
|
||||
'process.env.NODE_ENV': JSON.stringify(process.env.NODE_ENV),
|
||||
'process.env.NODE_DEBUG': JSON.stringify(process.env.NODE_DEBUG),
|
||||
'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
|
||||
'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
|
||||
'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
|
||||
'process.env.VERSION_NUMBER': JSON.stringify(VERSION_NUMBER),
|
||||
'process.env.COMMIT_HASH': JSON.stringify(COMMIT_HASH),
|
||||
/* i18n */
|
||||
'process.env.USE_LOCIZE': JSON.stringify(process.env.USE_LOCIZE || ''),
|
||||
'process.env.LOCIZE_PROJECTID': JSON.stringify(process.env.LOCIZE_PROJECTID || ''),
|
||||
'process.env.LOCIZE_API_KEY': JSON.stringify(process.env.LOCIZE_API_KEY || ''),
|
||||
'process.env.REACT_APP_I18N_DEBUG': JSON.stringify(process.env.REACT_APP_I18N_DEBUG || ''),
|
||||
};
|
||||
|
||||
// Only redefine updated values. This avoids warning messages in the logs
|
||||
if (!process.env.APP_CONFIG) {
|
||||
defineValues['process.env.APP_CONFIG'] = '';
|
||||
}
|
||||
|
||||
module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
if (!process.env.NODE_ENV) {
|
||||
throw new Error('process.env.NODE_ENV not set');
|
||||
@@ -91,10 +113,24 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
},
|
||||
},
|
||||
cssToJavaScript,
|
||||
// Note: Only uncomment the following if you are using the old style of stylus in v2
|
||||
// Also you need to uncomment this platform/app/.webpack/rules/extractStyleChunks.js
|
||||
// stylusToJavaScript,
|
||||
{
|
||||
test: /\.wasm/,
|
||||
type: 'asset/resource',
|
||||
},
|
||||
{
|
||||
test: /\.(png|jpe?g|gif|svg)$/i,
|
||||
use: [
|
||||
{
|
||||
loader: 'file-loader',
|
||||
options: {
|
||||
name: 'assets/images/[name].[ext]',
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
], //.concat(vtkRules),
|
||||
},
|
||||
resolve: {
|
||||
@@ -133,21 +169,7 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
},
|
||||
},
|
||||
plugins: [
|
||||
new webpack.DefinePlugin({
|
||||
/* Application */
|
||||
'process.env.NODE_ENV': JSON.stringify(process.env.NODE_ENV),
|
||||
'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
|
||||
'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
|
||||
'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
|
||||
'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
|
||||
'process.env.VERSION_NUMBER': JSON.stringify(VERSION_NUMBER),
|
||||
'process.env.COMMIT_HASH': JSON.stringify(COMMIT_HASH),
|
||||
/* i18n */
|
||||
'process.env.USE_LOCIZE': JSON.stringify(process.env.USE_LOCIZE || ''),
|
||||
'process.env.LOCIZE_PROJECTID': JSON.stringify(process.env.LOCIZE_PROJECTID || ''),
|
||||
'process.env.LOCIZE_API_KEY': JSON.stringify(process.env.LOCIZE_API_KEY || ''),
|
||||
'process.env.REACT_APP_I18N_DEBUG': JSON.stringify(process.env.REACT_APP_I18N_DEBUG || ''),
|
||||
}),
|
||||
new webpack.DefinePlugin(defineValues),
|
||||
new webpack.ProvidePlugin({
|
||||
Buffer: ['buffer', 'Buffer'],
|
||||
}),
|
||||
|
||||
+1466
File diff suppressed because it is too large.
Load diff
+2
-2
@@ -21,7 +21,7 @@
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
FROM node:16.15.0-slim as json-copier
|
||||
FROM node:18.16.1-slim as json-copier
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
@@ -37,7 +37,7 @@ COPY platform /usr/src/app/platform
|
||||
#RUN find platform \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
|
||||
# Copy Files
|
||||
FROM node:16.15.0-slim as builder
|
||||
FROM node:18.16.1-slim as builder
|
||||
RUN apt-get update && apt-get install -y build-essential python3
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
|
||||
@@ -17,6 +17,10 @@ provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF
|
||||
<div align="center">
|
||||
📰 <a href="https://ohif.org/news/"><strong>Join OHIF Newsletter</strong></a> 📰
|
||||
</div>
|
||||
<div align="center">
|
||||
📰 <a href="https://ohif.org/news/"><strong>Join OHIF Newsletter</strong></a> 📰
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<hr />
|
||||
@@ -37,12 +41,15 @@ provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF
|
||||
|
||||
| | | |
|
||||
| :-: | :--- | :--- |
|
||||
| <img src="platform/docs/docs/assets/img/demo-measurements.jpg" alt="Measurement tracking" width="350"/> | Measurement Tracking | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5) |
|
||||
| <img src="platform/docs/docs/assets/img/demo-segmentation.png" alt="Segmentations" width="350"/> | Labelmap Segmentations | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.12.2.1107.5.2.32.35162.30000015050317233592200000046) |
|
||||
| <img src="platform/docs/docs/assets/img/demo-ptct.png" alt="Hanging Protocols" width="350"/> | Fusion and Custom Hanging protocols | [Demo](https://viewer.ohif.org/tmtv?StudyInstanceUIDs=1.3.6.1.4.1.14519.5.2.1.7009.2403.334240657131972136850343327463) |
|
||||
| <img src="platform/docs/docs/assets/img/demo-microscopy.png" alt="Microscopy" width="350"/> | Slide Microscopy | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.275741864483510678566144889372061815320) |
|
||||
| <img src="platform/docs/docs/assets/img/demo-volumeRendering.png" alt="Volume Rendering" width="350"/> | Volume Rendering | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5&hangingprotocolId=mprAnd3DVolumeViewport) |
|
||||
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-measurements.webp?raw=true" alt="Measurement tracking" width="350"/> | Measurement Tracking | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-segmentation.webp?raw=true" alt="Segmentations" width="350"/> | Labelmap Segmentations | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.12.2.1107.5.2.32.35162.30000015050317233592200000046) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-ptct.webp?raw=true" alt="Hanging Protocols" width="350"/> | Fusion and Custom Hanging protocols | [Demo](https://viewer.ohif.org/tmtv?StudyInstanceUIDs=1.3.6.1.4.1.14519.5.2.1.7009.2403.334240657131972136850343327463) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-volume-rendering.webp?raw=true" alt="Volume Rendering" width="350"/> | Volume Rendering | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5&hangingprotocolId=mprAnd3DVolumeViewport) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-pdf.webp?raw=true" alt="PDF" width="350"/> | PDF | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.317377619501274872606137091638706705333) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-rtstruct.webp?raw=true" alt="RTSTRUCT" width="350"/> | RT STRUCT | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.5962.99.1.2968617883.1314880426.1493322302363.3.0) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-4d.webp?raw=true" alt="4D" width="350"/> | 4D | [Demo](https://viewer.ohif.org/dynamic-volume?StudyInstanceUIDs=2.25.232704420736447710317909004159492840763) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-video.webp?raw=true" alt="VIDEO" width="350"/> | Video | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.96975534054447904995905761963464388233) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/microscopy.webp?raw=true" alt="microscopy" width="350"/> | Slide Microscopy | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.141277760791347900862109212450152067508) |
|
||||
|
||||
|
||||
## About
|
||||
|
||||
@@ -26,6 +26,7 @@ module.exports = {
|
||||
'@babel/plugin-transform-typescript',
|
||||
['@babel/plugin-proposal-private-property-in-object', { loose: true }],
|
||||
['@babel/plugin-proposal-private-methods', { loose: true }],
|
||||
'@babel/plugin-transform-class-static-block',
|
||||
],
|
||||
env: {
|
||||
test: {
|
||||
@@ -45,6 +46,7 @@ module.exports = {
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/transform-destructuring',
|
||||
'@babel/plugin-transform-runtime',
|
||||
'@babel/plugin-transform-typescript',
|
||||
],
|
||||
|
||||
+1
-1
@@ -1 +1 @@
|
||||
74e62a176374f720080d4e777972f70e7f2d8b2b
|
||||
339299113c65b5ce4032b02b5b4043a8968107ed
|
||||
@@ -1,134 +0,0 @@
|
||||
import ImageSet from '@ohif/core/src/classes/ImageSet';
|
||||
import { IWebApiDataSource } from '@ohif/core';
|
||||
|
||||
/**
|
||||
*
|
||||
*/
|
||||
export default {
|
||||
id: '@ohif/extension-*',
|
||||
|
||||
/**
|
||||
* LIFECYCLE HOOKS
|
||||
*/
|
||||
preRegistration() {},
|
||||
beforeExtInit() {},
|
||||
beforeExtDestroy() {},
|
||||
|
||||
/**
|
||||
* MODULES
|
||||
*/
|
||||
getCommandsModule,
|
||||
getContextModule,
|
||||
getDataSourcesModule,
|
||||
getLayoutTemplateModule,
|
||||
getPanelModule,
|
||||
getSopClassHandlerModule,
|
||||
getToolbarModule() {},
|
||||
getViewportModule,
|
||||
};
|
||||
|
||||
// appConfig,
|
||||
// extensionConfig,
|
||||
// dataSources,
|
||||
// servicesManager,
|
||||
// extensionManager,
|
||||
// commandsManager,
|
||||
|
||||
/**
|
||||
*
|
||||
*/
|
||||
const getCommandsModule = () => ({
|
||||
definitions: {
|
||||
exampleActionDef: {
|
||||
commandFn: ({ param1 }) => {
|
||||
console.log(`param1's value is: ${param1}`);
|
||||
},
|
||||
// storeContexts: ['viewports'],
|
||||
options: { param1: 'hello world' },
|
||||
context: 'VIEWER', // optional
|
||||
},
|
||||
},
|
||||
defaultContext: 'ACTIVE_VIEWPORT::DICOMSR',
|
||||
});
|
||||
|
||||
const ExampleContext = React.createContext();
|
||||
|
||||
function ExampleContextProvider({ children }) {
|
||||
return <ExampleContext.Provider value={{ example: 'value' }}>{children}</ExampleContext.Provider>;
|
||||
}
|
||||
|
||||
const getContextModule = () => [
|
||||
{
|
||||
name: 'ExampleContext',
|
||||
context: ExampleContext,
|
||||
provider: ExampleContextProvider,
|
||||
},
|
||||
];
|
||||
|
||||
const getDataSourcesModule = () => [
|
||||
{
|
||||
name: 'exampleDataSource',
|
||||
type: 'webApi', // 'webApi' | 'local' | 'other'
|
||||
createDataSource: dataSourceConfig => {
|
||||
return IWebApiDataSource.create(/* */);
|
||||
},
|
||||
},
|
||||
];
|
||||
|
||||
const getLayoutTemplateModule = (/* ... */) => [
|
||||
{
|
||||
id: 'exampleLayout',
|
||||
name: 'exampleLayout',
|
||||
component: ExampleLayoutComponent,
|
||||
},
|
||||
];
|
||||
|
||||
const getPanelModule = () => {
|
||||
return [
|
||||
{
|
||||
name: 'exampleSidePanel',
|
||||
iconName: 'info-circle-o',
|
||||
iconLabel: 'Example',
|
||||
label: 'Hello World',
|
||||
isDisabled: studies => {}, // optional
|
||||
component: ExamplePanelContentComponent,
|
||||
},
|
||||
];
|
||||
};
|
||||
|
||||
const getSopClassHandlerModule = (/* ... */) => {
|
||||
const BASIC_TEXT_SR = '1.2.840.10008.5.1.4.1.1.88.11';
|
||||
|
||||
return [
|
||||
{
|
||||
name: 'ExampleSopClassHandle',
|
||||
sopClassUids: [BASIC_TEXT_SR],
|
||||
getDisplaySetsFromSeries: instances => {
|
||||
const imageSet = new ImageSet(instances);
|
||||
|
||||
imageSet.setAttributes(/** */);
|
||||
imageSet.sortBy((a, b) => 0);
|
||||
|
||||
return imageSet;
|
||||
},
|
||||
},
|
||||
];
|
||||
};
|
||||
|
||||
const getToolbarModule = () => {};
|
||||
|
||||
// displaySet, dataSource
|
||||
const getViewportModule = () => {
|
||||
const wrappedViewport = props => {
|
||||
return (
|
||||
<ExampleViewport
|
||||
{...props}
|
||||
onEvent={data => {
|
||||
commandsManager.runCommand('commandName', data);
|
||||
}}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
return [{ name: 'example', component: wrappedViewport }];
|
||||
};
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-rt",
|
||||
"version": "3.7.0-beta.73",
|
||||
"version": "3.8.2",
|
||||
"description": "DICOM RT read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -24,6 +24,8 @@
|
||||
"yarn": ">=1.18.0"
|
||||
},
|
||||
"scripts": {
|
||||
"clean": "shx rm -rf dist",
|
||||
"clean:deep": "yarn run clean && shx rm -rf node_modules",
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
|
||||
"dev:dicom-seg": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
@@ -31,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.7.0-beta.73",
|
||||
"@ohif/extension-cornerstone": "3.7.0-beta.73",
|
||||
"@ohif/extension-default": "3.7.0-beta.73",
|
||||
"@ohif/i18n": "3.7.0-beta.73",
|
||||
"@ohif/core": "3.8.2\n",
|
||||
"@ohif/extension-cornerstone": "3.8.2\n",
|
||||
"@ohif/extension-default": "3.8.2\n",
|
||||
"@ohif/i18n": "3.8.2\n",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^17.0.2",
|
||||
"react-dom": "^17.0.2",
|
||||
|
||||
+13
-6
@@ -5,9 +5,13 @@ import loadRTStruct from './loadRTStruct';
|
||||
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.481.3'];
|
||||
|
||||
let loadPromises = {};
|
||||
const loadPromises = {};
|
||||
|
||||
function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager) {
|
||||
function _getDisplaySetsFromSeries(
|
||||
instances,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager
|
||||
) {
|
||||
const instance = instances[0];
|
||||
|
||||
const {
|
||||
@@ -69,8 +73,8 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
|
||||
displaySet.getReferenceDisplaySet = () => {
|
||||
const { DisplaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = DisplaySetService.getDisplaySetsForSeries(
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
);
|
||||
|
||||
@@ -90,7 +94,7 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
function _load(rtDisplaySet, servicesManager, extensionManager, headers) {
|
||||
function _load(rtDisplaySet, servicesManager: AppTypes.ServicesManager, extensionManager, headers) {
|
||||
const { SOPInstanceUID } = rtDisplaySet;
|
||||
const { segmentationService } = servicesManager.services;
|
||||
if (
|
||||
@@ -168,7 +172,10 @@ function _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
|
||||
return ReferencedSeriesSequence;
|
||||
}
|
||||
|
||||
function _segmentationExistsInCache(rtDisplaySet, segmentationService) {
|
||||
function _segmentationExistsInCache(
|
||||
rtDisplaySet,
|
||||
segmentationService: AppTypes.SegmentationService
|
||||
) {
|
||||
// Todo: fix this
|
||||
return false;
|
||||
// This should be abstracted with the CornerstoneCacheService
|
||||
@@ -2,7 +2,6 @@ import { id } from './id';
|
||||
import React from 'react';
|
||||
import { Types } from '@ohif/core';
|
||||
import getSopClassHandlerModule from './getSopClassHandlerModule';
|
||||
import hydrateRTDisplaySet from './utils/_hydrateRT';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import(/* webpackPrefetch: true */ './viewports/OHIFCornerstoneRTViewport');
|
||||
@@ -60,4 +59,3 @@ const extension: Types.Extensions.Extension = {
|
||||
};
|
||||
|
||||
export default extension;
|
||||
export { hydrateRTDisplaySet };
|
||||
@@ -1,70 +0,0 @@
|
||||
async function _hydrateRTDisplaySet({ rtDisplaySet, viewportId, servicesManager }) {
|
||||
const { segmentationService, hangingProtocolService, viewportGridService } =
|
||||
servicesManager.services;
|
||||
|
||||
const displaySetInstanceUID = rtDisplaySet.referencedDisplaySetInstanceUID;
|
||||
|
||||
let segmentationId = null;
|
||||
|
||||
// We need the hydration to notify panels about the new segmentation added
|
||||
const suppressEvents = false;
|
||||
|
||||
segmentationId = await segmentationService.createSegmentationForRTDisplaySet(
|
||||
rtDisplaySet,
|
||||
segmentationId,
|
||||
suppressEvents
|
||||
);
|
||||
|
||||
segmentationService.hydrateSegmentation(rtDisplaySet.displaySetInstanceUID);
|
||||
|
||||
const { viewports } = viewportGridService.getState();
|
||||
|
||||
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
|
||||
viewportId,
|
||||
displaySetInstanceUID
|
||||
);
|
||||
|
||||
viewportGridService.setDisplaySetsForViewports(updatedViewports);
|
||||
|
||||
// Todo: fix this after we have a better way for stack viewport segmentations
|
||||
|
||||
// check every viewport in the viewports to see if the displaySetInstanceUID
|
||||
// is being displayed, if so we need to update the viewport to use volume viewport
|
||||
// (if already is not using it) since Cornerstone3D currently only supports
|
||||
// volume viewport for segmentation
|
||||
viewports.forEach(viewport => {
|
||||
if (viewport.viewportId === viewportId) {
|
||||
return;
|
||||
}
|
||||
|
||||
const shouldDisplaySeg = segmentationService.shouldRenderSegmentation(
|
||||
viewport.displaySetInstanceUIDs,
|
||||
rtDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
if (shouldDisplaySeg) {
|
||||
updatedViewports.push({
|
||||
viewportId: viewport.viewportId,
|
||||
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
|
||||
viewportOptions: {
|
||||
// Note: This is a hack to get the grid to re-render the OHIFCornerstoneViewport component
|
||||
// Used for segmentation hydration right now, since the logic to decide whether
|
||||
// a viewport needs to render a segmentation lives inside the CornerstoneViewportService
|
||||
// so we need to re-render (force update via change of the needsRerendering) so that React
|
||||
// does the diffing and decides we should render this again (although the id and element has not changed)
|
||||
// so that the CornerstoneViewportService can decide whether to render the segmentation or not.
|
||||
needsRerendering: true,
|
||||
initialImageOptions: {
|
||||
preset: 'middle',
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
// Do the entire update at once
|
||||
viewportGridService.setDisplaySetsForViewports(updatedViewports);
|
||||
return true;
|
||||
}
|
||||
|
||||
export default _hydrateRTDisplaySet;
|
||||
@@ -1,7 +1,7 @@
|
||||
function createRTToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools, {});
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
export default createRTToolGroupAndAddTools;
|
||||
@@ -1,5 +1,4 @@
|
||||
import { ButtonEnums } from '@ohif/ui';
|
||||
import hydrateRTDisplaySet from './_hydrateRT';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
@@ -13,7 +12,8 @@ function promptHydrateRT({
|
||||
viewportId,
|
||||
toolGroupId = 'default',
|
||||
preHydrateCallbacks,
|
||||
}) {
|
||||
hydrateRTDisplaySet,
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService } = servicesManager.services;
|
||||
|
||||
return new Promise(async function (resolve, reject) {
|
||||
@@ -36,7 +36,7 @@ function promptHydrateRT({
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(uiViewportDialogService, viewportId) {
|
||||
function _askHydrate(uiViewportDialogService: AppTypes.UIViewportDialogService, viewportId) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = 'Do you want to open this Segmentation?';
|
||||
const actions = [
|
||||
@@ -57,6 +57,7 @@ function _askHydrate(uiViewportDialogService, viewportId) {
|
||||
};
|
||||
|
||||
uiViewportDialogService.show({
|
||||
id: 'promptHydrateRT',
|
||||
viewportId,
|
||||
type: 'info',
|
||||
message,
|
||||
@@ -66,6 +67,11 @@ function _askHydrate(uiViewportDialogService, viewportId) {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
onKeyPress: event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmit(RESPONSE.HYDRATE_SEG);
|
||||
}
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
@@ -1,23 +1,18 @@
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import OHIF, { utils } from '@ohif/core';
|
||||
import { ViewportActionBar, useViewportGrid, LoadingIndicatorTotalPercent } from '@ohif/ui';
|
||||
import { useViewportGrid, LoadingIndicatorTotalPercent, ViewportActionArrows } from '@ohif/ui';
|
||||
|
||||
import _hydrateRTdisplaySet from '../utils/_hydrateRT';
|
||||
import promptHydrateRT from '../utils/promptHydrateRT';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
import createRTToolGroupAndAddTools from '../utils/initRTToolGroup';
|
||||
import _hydrateRTDisplaySet from '../utils/_hydrateRT';
|
||||
|
||||
const { formatDate } = utils;
|
||||
const RT_TOOLGROUP_BASE_NAME = 'RTToolGroup';
|
||||
|
||||
function OHIFCornerstoneRTViewport(props) {
|
||||
function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
viewportLabel,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
@@ -29,6 +24,7 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
segmentationService,
|
||||
uiNotificationService,
|
||||
customizationService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
@@ -95,6 +91,13 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
});
|
||||
}, [viewportGrid]);
|
||||
|
||||
const hydrateRTDisplaySet = ({ rtDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
|
||||
displaySets: [rtDisplaySet],
|
||||
viewportId,
|
||||
});
|
||||
};
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
@@ -108,12 +111,15 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, rtDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'volume',
|
||||
viewportType: 'stack',
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
}}
|
||||
onElementEnabled={onElementEnabled}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
onElementDisabled={onElementDisabled}
|
||||
></Component>
|
||||
);
|
||||
@@ -121,7 +127,6 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
direction = direction === 'left' ? -1 : 1;
|
||||
const segmentationId = rtDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
@@ -154,6 +159,7 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
viewportId,
|
||||
rtDisplaySet,
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateRTDisplaySet,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
@@ -162,6 +168,8 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading]);
|
||||
|
||||
useEffect(() => {
|
||||
// I'm not sure what is this, since in RT we support Overlapping segments
|
||||
// via contours
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
@@ -274,20 +282,7 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
});
|
||||
}
|
||||
|
||||
const {
|
||||
PatientID,
|
||||
PatientName,
|
||||
PatientSex,
|
||||
PatientAge,
|
||||
SliceThickness,
|
||||
ManufacturerModelName,
|
||||
StudyDate,
|
||||
SeriesDescription,
|
||||
SpacingBetweenSlices,
|
||||
SeriesNumber,
|
||||
} = referencedDisplaySetRef.current.metadata;
|
||||
|
||||
const onStatusClick = async () => {
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a RT and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the RT. This is
|
||||
@@ -295,48 +290,53 @@ function OHIFCornerstoneRTViewport(props) {
|
||||
// presentation state (w/l and invert) and then opens the RT. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await _hydrateRTDisplaySet({
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
};
|
||||
}, [hydrateRTDisplaySet, rtDisplaySet, storePresentationState, viewportId]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.setComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
isHydrated,
|
||||
onSegmentChange,
|
||||
onStatusClick,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
return (
|
||||
<>
|
||||
<ViewportActionBar
|
||||
onDoubleClick={evt => {
|
||||
evt.stopPropagation();
|
||||
evt.preventDefault();
|
||||
}}
|
||||
onArrowsClick={onSegmentChange}
|
||||
getStatusComponent={() => {
|
||||
return _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
});
|
||||
}}
|
||||
studyData={{
|
||||
label: viewportLabel,
|
||||
useAltStyling: true,
|
||||
studyDate: formatDate(StudyDate),
|
||||
currentSeries: SeriesNumber,
|
||||
seriesDescription: `RT Viewport ${SeriesDescription}`,
|
||||
patientInformation: {
|
||||
patientName: PatientName ? OHIF.utils.formatPN(PatientName.Alphabetic) : '',
|
||||
patientSex: PatientSex || '',
|
||||
patientAge: PatientAge || '',
|
||||
MRN: PatientID || '',
|
||||
thickness: SliceThickness ? `${SliceThickness.toFixed(2)}mm` : '',
|
||||
spacing:
|
||||
SpacingBetweenSlices !== undefined ? `${SpacingBetweenSlices.toFixed(2)}mm` : '',
|
||||
scanner: ManufacturerModelName || '',
|
||||
},
|
||||
}}
|
||||
/>
|
||||
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
{rtIsLoading && (
|
||||
<LoadingIndicatorTotalPercent
|
||||
|
||||
@@ -6,9 +6,6 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
@@ -26,23 +23,28 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
ToolTipMessage = () => <div>Click LOAD to load RTSTRUCT.</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">RTSTRUCT</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
const StatusArea = () => {
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">RTSTRUCT</span>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
|
||||
@@ -45,10 +45,10 @@ module.exports = (env, argv) => {
|
||||
new webpack.optimize.LimitChunkCountPlugin({
|
||||
maxChunks: 1,
|
||||
}),
|
||||
// new MiniCssExtractPlugin({
|
||||
// filename: `./dist/${outputName}.css`,
|
||||
// chunkFilename: `./dist/${outputName}.css`,
|
||||
// }),
|
||||
new MiniCssExtractPlugin({
|
||||
filename: `./dist/${outputName}.css`,
|
||||
chunkFilename: `./dist/${outputName}.css`,
|
||||
}),
|
||||
],
|
||||
});
|
||||
};
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-seg",
|
||||
"version": "3.7.0-beta.73",
|
||||
"version": "3.8.2",
|
||||
"description": "DICOM SEG read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -24,6 +24,8 @@
|
||||
"yarn": ">=1.18.0"
|
||||
},
|
||||
"scripts": {
|
||||
"clean": "shx rm -rf dist",
|
||||
"clean:deep": "yarn run clean && shx rm -rf node_modules",
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
|
||||
"dev:dicom-seg": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
@@ -31,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.7.0-beta.73",
|
||||
"@ohif/extension-cornerstone": "3.7.0-beta.73",
|
||||
"@ohif/extension-default": "3.7.0-beta.73",
|
||||
"@ohif/i18n": "3.7.0-beta.73",
|
||||
"@ohif/core": "3.8.2\n",
|
||||
"@ohif/extension-cornerstone": "3.8.2\n",
|
||||
"@ohif/extension-default": "3.8.2\n",
|
||||
"@ohif/i18n": "3.8.2\n",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^17.0.2",
|
||||
"react-dom": "^17.0.2",
|
||||
@@ -44,6 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.77.6",
|
||||
"@cornerstonejs/core": "^1.77.6",
|
||||
"@kitware/vtk.js": "30.4.1",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,480 @@
|
||||
import dcmjs from 'dcmjs';
|
||||
import { createReportDialogPrompt } from '@ohif/extension-default';
|
||||
import { Types } from '@ohif/core';
|
||||
import { cache, metaData } from '@cornerstonejs/core';
|
||||
import {
|
||||
segmentation as cornerstoneToolsSegmentation,
|
||||
Enums as cornerstoneToolsEnums,
|
||||
utilities,
|
||||
} from '@cornerstonejs/tools';
|
||||
import { adaptersRT, helpers, adaptersSEG } from '@cornerstonejs/adapters';
|
||||
import { classes, DicomMetadataStore } from '@ohif/core';
|
||||
|
||||
import vtkImageMarchingSquares from '@kitware/vtk.js/Filters/General/ImageMarchingSquares';
|
||||
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
|
||||
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
||||
|
||||
import {
|
||||
updateViewportsForSegmentationRendering,
|
||||
getUpdatedViewportsForSegmentation,
|
||||
getTargetViewport,
|
||||
} from './utils/hydrationUtils';
|
||||
const { segmentation: segmentationUtils } = utilities;
|
||||
|
||||
const { datasetToBlob } = dcmjs.data;
|
||||
|
||||
const {
|
||||
Cornerstone3D: {
|
||||
Segmentation: { generateLabelMaps2DFrom3D, generateSegmentation },
|
||||
},
|
||||
} = adaptersSEG;
|
||||
|
||||
const {
|
||||
Cornerstone3D: {
|
||||
RTSS: { generateRTSSFromSegmentations },
|
||||
},
|
||||
} = adaptersRT;
|
||||
|
||||
const { downloadDICOMData } = helpers;
|
||||
|
||||
const commandsModule = ({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
}: Types.Extensions.ExtensionParams): Types.Extensions.CommandsModule => {
|
||||
const {
|
||||
uiNotificationService,
|
||||
segmentationService,
|
||||
uiDialogService,
|
||||
displaySetService,
|
||||
viewportGridService,
|
||||
toolGroupService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const actions = {
|
||||
/**
|
||||
* Retrieves a list of viewports that require updates in preparation for segmentation rendering.
|
||||
* This function evaluates viewports based on their compatibility with the provided segmentation's
|
||||
* frame of reference UID and appends them to the updated list if they should render the segmentation.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - the ID of the viewport to be updated.
|
||||
* @param params.servicesManager - The services manager
|
||||
* @param params.referencedDisplaySetInstanceUID - Optional UID for the referenced display set instance.
|
||||
*
|
||||
* @returns {Array} Returns an array of viewports that require updates for segmentation rendering.
|
||||
*/
|
||||
getUpdatedViewportsForSegmentation,
|
||||
/**
|
||||
* Creates an empty segmentation for a specified viewport.
|
||||
* It first checks if the display set associated with the viewport is reconstructable.
|
||||
* If not, it raises a notification error. Otherwise, it creates a new segmentation
|
||||
* for the display set after handling the necessary steps for making the viewport
|
||||
* a volume viewport first
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - the target viewport ID.
|
||||
*
|
||||
*/
|
||||
createEmptySegmentationForViewport: async ({ viewportId }) => {
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
// Todo: add support for multiple display sets
|
||||
const displaySetInstanceUID = viewport.displaySetInstanceUIDs[0];
|
||||
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
if (!displaySet.isReconstructable) {
|
||||
uiNotificationService.show({
|
||||
title: 'Segmentation',
|
||||
message: 'Segmentation is not supported for non-reconstructible displaysets yet',
|
||||
type: 'error',
|
||||
});
|
||||
return;
|
||||
}
|
||||
|
||||
updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
loadFn: async () => {
|
||||
const currentSegmentations = segmentationService.getSegmentations();
|
||||
const segmentationId = await segmentationService.createSegmentationForDisplaySet(
|
||||
displaySetInstanceUID,
|
||||
{ label: `Segmentation ${currentSegmentations.length + 1}` }
|
||||
);
|
||||
|
||||
const toolGroupId = viewport.viewportOptions.toolGroupId;
|
||||
|
||||
await segmentationService.addSegmentationRepresentationToToolGroup(
|
||||
toolGroupId,
|
||||
segmentationId
|
||||
);
|
||||
|
||||
// Add only one segment for now
|
||||
segmentationService.addSegment(segmentationId, {
|
||||
toolGroupId,
|
||||
segmentIndex: 1,
|
||||
properties: {
|
||||
label: 'Segment 1',
|
||||
},
|
||||
});
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
});
|
||||
},
|
||||
/**
|
||||
* Loads segmentations for a specified viewport.
|
||||
* The function prepares the viewport for rendering, then loads the segmentation details.
|
||||
* Additionally, if the segmentation has scalar data, it is set for the corresponding label map volume.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.segmentations - Array of segmentations to be loaded.
|
||||
* @param params.viewportId - the target viewport ID.
|
||||
*
|
||||
*/
|
||||
loadSegmentationsForViewport: async ({ segmentations, viewportId }) => {
|
||||
updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
loadFn: async () => {
|
||||
// Todo: handle adding more than one segmentation
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const displaySetInstanceUID = viewport.displaySetInstanceUIDs[0];
|
||||
|
||||
const segmentation = segmentations[0];
|
||||
const segmentationId = segmentation.id;
|
||||
const label = segmentation.label;
|
||||
const segments = segmentation.segments;
|
||||
|
||||
delete segmentation.segments;
|
||||
|
||||
await segmentationService.createSegmentationForDisplaySet(displaySetInstanceUID, {
|
||||
segmentationId,
|
||||
label,
|
||||
});
|
||||
|
||||
if (segmentation.scalarData) {
|
||||
const labelmapVolume = segmentationService.getLabelmapVolume(segmentationId);
|
||||
labelmapVolume.scalarData.set(segmentation.scalarData);
|
||||
}
|
||||
|
||||
segmentationService.addOrUpdateSegmentation(segmentation);
|
||||
|
||||
const toolGroupId = viewport.viewportOptions.toolGroupId;
|
||||
await segmentationService.addSegmentationRepresentationToToolGroup(
|
||||
toolGroupId,
|
||||
segmentationId
|
||||
);
|
||||
|
||||
segments.forEach(segment => {
|
||||
if (segment === null) {
|
||||
return;
|
||||
}
|
||||
segmentationService.addSegment(segmentationId, {
|
||||
segmentIndex: segment.segmentIndex,
|
||||
toolGroupId,
|
||||
properties: {
|
||||
color: segment.color,
|
||||
label: segment.label,
|
||||
opacity: segment.opacity,
|
||||
isLocked: segment.isLocked,
|
||||
visibility: segment.isVisible,
|
||||
active: segmentation.activeSegmentIndex === segment.segmentIndex,
|
||||
},
|
||||
});
|
||||
});
|
||||
|
||||
if (segmentation.centroidsIJK) {
|
||||
segmentationService.setCentroids(segmentation.id, segmentation.centroidsIJK);
|
||||
}
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
});
|
||||
},
|
||||
/**
|
||||
* Loads segmentation display sets for a specified viewport.
|
||||
* Depending on the modality of the display set (SEG or RTSTRUCT),
|
||||
* it chooses the appropriate service function to create
|
||||
* the segmentation for the display set.
|
||||
* The function then prepares the viewport for rendering segmentation.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - ID of the viewport where the segmentation display sets should be loaded.
|
||||
* @param params.displaySets - Array of display sets to be loaded for segmentation.
|
||||
*
|
||||
*/
|
||||
loadSegmentationDisplaySetsForViewport: async ({ viewportId, displaySets }) => {
|
||||
// Todo: handle adding more than one segmentation
|
||||
const displaySet = displaySets[0];
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
displaySet.referencedDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
loadFn: async () => {
|
||||
const segDisplaySet = displaySet;
|
||||
const suppressEvents = false;
|
||||
const serviceFunction =
|
||||
segDisplaySet.Modality === 'SEG'
|
||||
? 'createSegmentationForSEGDisplaySet'
|
||||
: 'createSegmentationForRTDisplaySet';
|
||||
|
||||
const boundFn = segmentationService[serviceFunction].bind(segmentationService);
|
||||
const segmentationId = await boundFn(segDisplaySet, null, suppressEvents);
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
segmentation.description = `S${referencedDisplaySet.SeriesNumber}: ${referencedDisplaySet.SeriesDescription}`;
|
||||
return segmentationId;
|
||||
},
|
||||
});
|
||||
},
|
||||
/**
|
||||
* Generates a segmentation from a given segmentation ID.
|
||||
* This function retrieves the associated segmentation and
|
||||
* its referenced volume, extracts label maps from the
|
||||
* segmentation volume, and produces segmentation data
|
||||
* alongside associated metadata.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.segmentationId - ID of the segmentation to be generated.
|
||||
* @param params.options - Optional configuration for the generation process.
|
||||
*
|
||||
* @returns Returns the generated segmentation data.
|
||||
*/
|
||||
generateSegmentation: ({ segmentationId, options = {} }) => {
|
||||
const segmentation = cornerstoneToolsSegmentation.state.getSegmentation(segmentationId);
|
||||
|
||||
const { referencedVolumeId } = segmentation.representationData.LABELMAP;
|
||||
|
||||
const segmentationVolume = cache.getVolume(segmentationId);
|
||||
const referencedVolume = cache.getVolume(referencedVolumeId);
|
||||
const referencedImages = referencedVolume.getCornerstoneImages();
|
||||
|
||||
const labelmapObj = generateLabelMaps2DFrom3D(segmentationVolume);
|
||||
|
||||
// Generate fake metadata as an example
|
||||
labelmapObj.metadata = [];
|
||||
|
||||
const segmentationInOHIF = segmentationService.getSegmentation(segmentationId);
|
||||
labelmapObj.segmentsOnLabelmap.forEach(segmentIndex => {
|
||||
// segmentation service already has a color for each segment
|
||||
const segment = segmentationInOHIF?.segments[segmentIndex];
|
||||
const { label, color } = segment;
|
||||
|
||||
const RecommendedDisplayCIELabValue = dcmjs.data.Colors.rgb2DICOMLAB(
|
||||
color.slice(0, 3).map(value => value / 255)
|
||||
).map(value => Math.round(value));
|
||||
|
||||
const segmentMetadata = {
|
||||
SegmentNumber: segmentIndex.toString(),
|
||||
SegmentLabel: label,
|
||||
SegmentAlgorithmType: 'MANUAL',
|
||||
SegmentAlgorithmName: 'OHIF Brush',
|
||||
RecommendedDisplayCIELabValue,
|
||||
SegmentedPropertyCategoryCodeSequence: {
|
||||
CodeValue: 'T-D0050',
|
||||
CodingSchemeDesignator: 'SRT',
|
||||
CodeMeaning: 'Tissue',
|
||||
},
|
||||
SegmentedPropertyTypeCodeSequence: {
|
||||
CodeValue: 'T-D0050',
|
||||
CodingSchemeDesignator: 'SRT',
|
||||
CodeMeaning: 'Tissue',
|
||||
},
|
||||
};
|
||||
labelmapObj.metadata[segmentIndex] = segmentMetadata;
|
||||
});
|
||||
|
||||
const generatedSegmentation = generateSegmentation(
|
||||
referencedImages,
|
||||
labelmapObj,
|
||||
metaData,
|
||||
options
|
||||
);
|
||||
|
||||
return generatedSegmentation;
|
||||
},
|
||||
/**
|
||||
* Downloads a segmentation based on the provided segmentation ID.
|
||||
* This function retrieves the associated segmentation and
|
||||
* uses it to generate the corresponding DICOM dataset, which
|
||||
* is then downloaded with an appropriate filename.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.segmentationId - ID of the segmentation to be downloaded.
|
||||
*
|
||||
*/
|
||||
downloadSegmentation: ({ segmentationId }) => {
|
||||
const segmentationInOHIF = segmentationService.getSegmentation(segmentationId);
|
||||
const generatedSegmentation = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
});
|
||||
|
||||
downloadDICOMData(generatedSegmentation.dataset, `${segmentationInOHIF.label}`);
|
||||
},
|
||||
/**
|
||||
* Stores a segmentation based on the provided segmentationId into a specified data source.
|
||||
* The SeriesDescription is derived from user input or defaults to the segmentation label,
|
||||
* and in its absence, defaults to 'Research Derived Series'.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.segmentationId - ID of the segmentation to be stored.
|
||||
* @param params.dataSource - Data source where the generated segmentation will be stored.
|
||||
*
|
||||
* @returns {Object|void} Returns the naturalized report if successfully stored,
|
||||
* otherwise throws an error.
|
||||
*/
|
||||
storeSegmentation: async ({ segmentationId, dataSource }) => {
|
||||
const promptResult = await createReportDialogPrompt(uiDialogService, {
|
||||
extensionManager,
|
||||
});
|
||||
|
||||
if (promptResult.action !== 1 && promptResult.value) {
|
||||
return;
|
||||
}
|
||||
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
if (!segmentation) {
|
||||
throw new Error('No segmentation found');
|
||||
}
|
||||
|
||||
const { label } = segmentation;
|
||||
const SeriesDescription = promptResult.value || label || 'Research Derived Series';
|
||||
|
||||
const generatedData = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription,
|
||||
},
|
||||
});
|
||||
|
||||
if (!generatedData || !generatedData.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
}
|
||||
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport);
|
||||
|
||||
// The "Mode" route listens for DicomMetadataStore changes
|
||||
// When a new instance is added, it listens and
|
||||
// automatically calls makeDisplaySets
|
||||
|
||||
// add the information for where we stored it to the instance as well
|
||||
naturalizedReport.wadoRoot = dataSource.getConfig().wadoRoot;
|
||||
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
},
|
||||
/**
|
||||
* Converts segmentations into RTSS for download.
|
||||
* This sample function retrieves all segentations and passes to
|
||||
* cornerstone tool adapter to convert to DICOM RTSS format. It then
|
||||
* converts dataset to downloadable blob.
|
||||
*
|
||||
*/
|
||||
downloadRTSS: ({ segmentationId }) => {
|
||||
const segmentations = segmentationService.getSegmentation(segmentationId);
|
||||
const vtkUtils = {
|
||||
vtkImageMarchingSquares,
|
||||
vtkDataArray,
|
||||
vtkImageData,
|
||||
};
|
||||
|
||||
const RTSS = generateRTSSFromSegmentations(
|
||||
segmentations,
|
||||
classes.MetadataProvider,
|
||||
DicomMetadataStore,
|
||||
cache,
|
||||
cornerstoneToolsEnums,
|
||||
vtkUtils
|
||||
);
|
||||
|
||||
try {
|
||||
const reportBlob = datasetToBlob(RTSS);
|
||||
|
||||
//Create a URL for the binary.
|
||||
const objectUrl = URL.createObjectURL(reportBlob);
|
||||
window.location.assign(objectUrl);
|
||||
} catch (e) {
|
||||
console.warn(e);
|
||||
}
|
||||
},
|
||||
setBrushSize: ({ value, toolNames }) => {
|
||||
const brushSize = Number(value);
|
||||
|
||||
toolGroupService.getToolGroupIds()?.forEach(toolGroupId => {
|
||||
if (toolNames?.length === 0) {
|
||||
segmentationUtils.setBrushSizeForToolGroup(toolGroupId, brushSize);
|
||||
} else {
|
||||
toolNames?.forEach(toolName => {
|
||||
segmentationUtils.setBrushSizeForToolGroup(toolGroupId, brushSize, toolName);
|
||||
});
|
||||
}
|
||||
});
|
||||
},
|
||||
setThresholdRange: ({
|
||||
value,
|
||||
toolNames = ['ThresholdCircularBrush', 'ThresholdSphereBrush'],
|
||||
}) => {
|
||||
toolGroupService.getToolGroupIds()?.forEach(toolGroupId => {
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
toolNames?.forEach(toolName => {
|
||||
toolGroup.setToolConfiguration(toolName, {
|
||||
strategySpecificConfiguration: {
|
||||
THRESHOLD: {
|
||||
threshold: value,
|
||||
},
|
||||
},
|
||||
});
|
||||
});
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
getUpdatedViewportsForSegmentation: {
|
||||
commandFn: actions.getUpdatedViewportsForSegmentation,
|
||||
},
|
||||
loadSegmentationDisplaySetsForViewport: {
|
||||
commandFn: actions.loadSegmentationDisplaySetsForViewport,
|
||||
},
|
||||
loadSegmentationsForViewport: {
|
||||
commandFn: actions.loadSegmentationsForViewport,
|
||||
},
|
||||
createEmptySegmentationForViewport: {
|
||||
commandFn: actions.createEmptySegmentationForViewport,
|
||||
},
|
||||
generateSegmentation: {
|
||||
commandFn: actions.generateSegmentation,
|
||||
},
|
||||
downloadSegmentation: {
|
||||
commandFn: actions.downloadSegmentation,
|
||||
},
|
||||
storeSegmentation: {
|
||||
commandFn: actions.storeSegmentation,
|
||||
},
|
||||
downloadRTSS: {
|
||||
commandFn: actions.downloadRTSS,
|
||||
},
|
||||
setBrushSize: {
|
||||
commandFn: actions.setBrushSize,
|
||||
},
|
||||
setThresholdRange: {
|
||||
commandFn: actions.setThresholdRange,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
actions,
|
||||
definitions,
|
||||
defaultContext: 'SEGMENTATION',
|
||||
};
|
||||
};
|
||||
|
||||
export default commandsModule;
|
||||
@@ -0,0 +1,80 @@
|
||||
import React from 'react';
|
||||
|
||||
import { useAppConfig } from '@state';
|
||||
import { Toolbox } from '@ohif/ui';
|
||||
import PanelSegmentation from './panels/PanelSegmentation';
|
||||
|
||||
const getPanelModule = ({
|
||||
commandsManager,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
configuration,
|
||||
title,
|
||||
}: withAppTypes) => {
|
||||
const { customizationService } = servicesManager.services;
|
||||
|
||||
const wrappedPanelSegmentation = configuration => {
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
return (
|
||||
<PanelSegmentation
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
configuration={{
|
||||
...configuration,
|
||||
disableEditing: appConfig.disableEditing,
|
||||
...customizationService.get('segmentation.panel'),
|
||||
}}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
const wrappedPanelSegmentationWithTools = configuration => {
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
return (
|
||||
<>
|
||||
<Toolbox
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
buttonSectionId="segmentationToolbox"
|
||||
title="Segmentation Tools"
|
||||
configuration={{
|
||||
...configuration,
|
||||
}}
|
||||
/>
|
||||
<PanelSegmentation
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
configuration={{
|
||||
...configuration,
|
||||
disableEditing: appConfig.disableEditing,
|
||||
...customizationService.get('segmentation.panel'),
|
||||
}}
|
||||
/>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
return [
|
||||
{
|
||||
name: 'panelSegmentation',
|
||||
iconName: 'tab-segmentation',
|
||||
iconLabel: 'Segmentation',
|
||||
label: 'Segmentation',
|
||||
component: wrappedPanelSegmentation,
|
||||
},
|
||||
{
|
||||
name: 'panelSegmentationWithTools',
|
||||
iconName: 'tab-segmentation',
|
||||
iconLabel: 'Segmentation',
|
||||
label: 'Segmentation',
|
||||
component: wrappedPanelSegmentationWithTools,
|
||||
},
|
||||
];
|
||||
};
|
||||
|
||||
export default getPanelModule;
|
||||
+53
-9
@@ -1,5 +1,6 @@
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, cache, triggerEvent, eventTarget } from '@cornerstonejs/core';
|
||||
import { CONSTANTS } from '@cornerstonejs/tools';
|
||||
import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
|
||||
|
||||
import { SOPClassHandlerId } from './id';
|
||||
@@ -7,9 +8,13 @@ import { dicomlabToRGB } from './utils/dicomlabToRGB';
|
||||
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4'];
|
||||
|
||||
let loadPromises = {};
|
||||
const loadPromises = {};
|
||||
|
||||
function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager) {
|
||||
function _getDisplaySetsFromSeries(
|
||||
instances,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager
|
||||
) {
|
||||
const instance = instances[0];
|
||||
|
||||
const {
|
||||
@@ -57,10 +62,11 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
|
||||
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
|
||||
if (!referencedSeriesSequence) {
|
||||
throw new Error('ReferencedSeriesSequence is missing for the SEG');
|
||||
console.error('ReferencedSeriesSequence is missing for the SEG');
|
||||
return;
|
||||
}
|
||||
|
||||
const referencedSeries = referencedSeriesSequence[0];
|
||||
const referencedSeries = referencedSeriesSequence[0] || referencedSeriesSequence;
|
||||
|
||||
displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
@@ -93,7 +99,12 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
function _load(segDisplaySet, servicesManager, extensionManager, headers) {
|
||||
function _load(
|
||||
segDisplaySet,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager,
|
||||
headers
|
||||
) {
|
||||
const { SOPInstanceUID } = segDisplaySet;
|
||||
const { segmentationService } = servicesManager.services;
|
||||
|
||||
@@ -135,12 +146,17 @@ function _load(segDisplaySet, servicesManager, extensionManager, headers) {
|
||||
return loadPromises[SOPInstanceUID];
|
||||
}
|
||||
|
||||
async function _loadSegments({ extensionManager, servicesManager, segDisplaySet, headers }) {
|
||||
async function _loadSegments({
|
||||
extensionManager,
|
||||
servicesManager,
|
||||
segDisplaySet,
|
||||
headers,
|
||||
}: withAppTypes) {
|
||||
const utilityModule = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.utilityModule.common'
|
||||
);
|
||||
|
||||
const { segmentationService } = servicesManager.services;
|
||||
const { segmentationService, uiNotificationService } = servicesManager.services;
|
||||
|
||||
const { dicomLoaderService } = utilityModule.exports;
|
||||
const arrayBuffer = await dicomLoaderService.findDicomDataPromise(segDisplaySet, null, headers);
|
||||
@@ -173,16 +189,44 @@ async function _loadSegments({ extensionManager, servicesManager, segDisplaySet,
|
||||
{ skipOverlapping, tolerance, eventTarget, triggerEvent }
|
||||
);
|
||||
|
||||
let usedRecommendedDisplayCIELabValue = true;
|
||||
results.segMetadata.data.forEach((data, i) => {
|
||||
if (i > 0) {
|
||||
data.rgba = dicomlabToRGB(data.RecommendedDisplayCIELabValue);
|
||||
data.rgba = data.RecommendedDisplayCIELabValue;
|
||||
|
||||
if (data.rgba) {
|
||||
data.rgba = dicomlabToRGB(data.rgba);
|
||||
} else {
|
||||
usedRecommendedDisplayCIELabValue = false;
|
||||
data.rgba = CONSTANTS.COLOR_LUT[i % CONSTANTS.COLOR_LUT.length];
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
if (results.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message:
|
||||
'Unsupported overlapping segments detected, segmentation rendering results may be incorrect.',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
|
||||
if (!usedRecommendedDisplayCIELabValue) {
|
||||
// Display a notification about the non-utilization of RecommendedDisplayCIELabValue
|
||||
uiNotificationService.show({
|
||||
title: 'DICOM SEG import',
|
||||
message:
|
||||
'RecommendedDisplayCIELabValue not found for one or more segments. The default color was used instead.',
|
||||
type: 'warning',
|
||||
duration: 5000,
|
||||
});
|
||||
}
|
||||
|
||||
Object.assign(segDisplaySet, results);
|
||||
}
|
||||
|
||||
function _segmentationExists(segDisplaySet, segmentationService) {
|
||||
function _segmentationExists(segDisplaySet, segmentationService: AppTypes.SegmentationService) {
|
||||
// This should be abstracted with the CornerstoneCacheService
|
||||
return segmentationService.getSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
}
|
||||
@@ -0,0 +1,57 @@
|
||||
export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
const { segmentationService, toolbarService, toolGroupService } = servicesManager.services;
|
||||
return [
|
||||
{
|
||||
name: 'evaluate.cornerstone.segmentation',
|
||||
evaluate: ({ viewportId, button, toolNames, disabledText }) => {
|
||||
// Todo: we need to pass in the button section Id since we are kind of
|
||||
// forcing the button to have black background since initially
|
||||
// it is designed for the toolbox not the toolbar on top
|
||||
// we should then branch the buttonSectionId to have different styles
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
if (!segmentations?.length) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright !bg-black opacity-50',
|
||||
disabledText: disabledText ?? 'No segmentations available',
|
||||
};
|
||||
}
|
||||
|
||||
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
|
||||
if (!toolGroup) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright ohif-disabled',
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
|
||||
const toolName = toolbarService.getToolNameForButton(button);
|
||||
|
||||
if (!toolGroup.hasTool(toolName) && !toolNames) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright ohif-disabled',
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
|
||||
const isPrimaryActive = toolNames
|
||||
? toolNames.includes(toolGroup.getActivePrimaryMouseButtonTool())
|
||||
: toolGroup.getActivePrimaryMouseButtonTool() === toolName;
|
||||
|
||||
return {
|
||||
disabled: false,
|
||||
className: isPrimaryActive
|
||||
? '!text-black !bg-primary-light hover:bg-primary-light hover-text-black hover:cursor-pointer'
|
||||
: '!text-common-bright !bg-black hover:bg-primary-light hover:cursor-pointer hover:text-black',
|
||||
// Todo: isActive right now is used for nested buttons where the primary
|
||||
// button needs to be fully rounded (vs partial rounded) when active
|
||||
// otherwise it does not have any other use
|
||||
isActive: isPrimaryActive,
|
||||
};
|
||||
},
|
||||
},
|
||||
];
|
||||
}
|
||||
@@ -1,12 +1,11 @@
|
||||
import { id } from './id';
|
||||
import React from 'react';
|
||||
|
||||
import { Types } from '@ohif/core';
|
||||
|
||||
import getSopClassHandlerModule from './getSopClassHandlerModule';
|
||||
import PanelSegmentation from './panels/PanelSegmentation';
|
||||
import getHangingProtocolModule from './getHangingProtocolModule';
|
||||
import hydrateSEGDisplaySet from './utils/_hydrateSEG';
|
||||
import getPanelModule from './getPanelModule';
|
||||
import getCommandsModule from './commandsModule';
|
||||
import { getToolbarModule } from './getToolbarModule';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import(/* webpackPrefetch: true */ './viewports/OHIFCornerstoneSEGViewport');
|
||||
@@ -29,36 +28,16 @@ const extension = {
|
||||
* You ID can be anything you want, but it should be unique.
|
||||
*/
|
||||
id,
|
||||
|
||||
/**
|
||||
* PanelModule should provide a list of panels that will be available in OHIF
|
||||
* for Modes to consume and render. Each panel is defined by a {name,
|
||||
* iconName, iconLabel, label, component} object. Example of a panel module
|
||||
* is the StudyBrowserPanel that is provided by the default extension in OHIF.
|
||||
*/
|
||||
getPanelModule: ({ servicesManager, commandsManager, extensionManager }): Types.Panel[] => {
|
||||
const wrappedPanelSegmentation = () => {
|
||||
return (
|
||||
<PanelSegmentation
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
return [
|
||||
{
|
||||
name: 'panelSegmentation',
|
||||
iconName: 'tab-segmentation',
|
||||
iconLabel: 'Segmentation',
|
||||
label: 'Segmentation',
|
||||
component: wrappedPanelSegmentation,
|
||||
},
|
||||
];
|
||||
},
|
||||
|
||||
getViewportModule({ servicesManager, extensionManager }) {
|
||||
getPanelModule,
|
||||
getCommandsModule,
|
||||
getToolbarModule,
|
||||
getViewportModule({ servicesManager, extensionManager, commandsManager }) {
|
||||
const ExtendedOHIFCornerstoneSEGViewport = props => {
|
||||
return (
|
||||
<OHIFCornerstoneSEGViewport
|
||||
@@ -83,4 +62,3 @@ const extension = {
|
||||
};
|
||||
|
||||
export default extension;
|
||||
export { hydrateSEGDisplaySet };
|
||||
@@ -1,46 +1,41 @@
|
||||
import { createReportAsync } from '@ohif/extension-default';
|
||||
import React, { useEffect, useState, useCallback } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { SegmentationGroupTable } from '@ohif/ui';
|
||||
import { SegmentationGroupTable, SegmentationGroupTableExpanded } from '@ohif/ui';
|
||||
import { SegmentationPanelMode } from '../types/segmentation';
|
||||
import callInputDialog from './callInputDialog';
|
||||
import { useAppConfig } from '@state';
|
||||
import callColorPickerDialog from './colorPickerDialog';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
export default function PanelSegmentation({ servicesManager, commandsManager }) {
|
||||
const { segmentationService, uiDialogService } = servicesManager.services;
|
||||
const [appConfig] = useAppConfig();
|
||||
const disableEditing = appConfig?.disableEditing;
|
||||
const components = {
|
||||
[SegmentationPanelMode.Expanded]: SegmentationGroupTableExpanded,
|
||||
[SegmentationPanelMode.Dropdown]: SegmentationGroupTable,
|
||||
};
|
||||
|
||||
export default function PanelSegmentation({
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
extensionManager,
|
||||
configuration,
|
||||
}: withAppTypes) {
|
||||
const {
|
||||
segmentationService,
|
||||
viewportGridService,
|
||||
uiDialogService,
|
||||
displaySetService,
|
||||
cornerstoneViewportService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const { t } = useTranslation('PanelSegmentation');
|
||||
|
||||
const [selectedSegmentationId, setSelectedSegmentationId] = useState(null);
|
||||
const [addSegmentationClassName, setAddSegmentationClassName] = useState('');
|
||||
const [segmentationConfiguration, setSegmentationConfiguration] = useState(
|
||||
segmentationService.getConfiguration()
|
||||
);
|
||||
|
||||
const [segmentations, setSegmentations] = useState(() => segmentationService.getSegmentations());
|
||||
|
||||
const [isMinimized, setIsMinimized] = useState({});
|
||||
|
||||
const onToggleMinimizeSegmentation = useCallback(
|
||||
id => {
|
||||
setIsMinimized(prevState => ({
|
||||
...prevState,
|
||||
[id]: !prevState[id],
|
||||
}));
|
||||
},
|
||||
[setIsMinimized]
|
||||
);
|
||||
|
||||
// Only expand the last segmentation added to the list and collapse the rest
|
||||
useEffect(() => {
|
||||
const lastSegmentationId = segmentations[segmentations.length - 1]?.id;
|
||||
if (lastSegmentationId) {
|
||||
setIsMinimized(prevState => ({
|
||||
...prevState,
|
||||
[lastSegmentationId]: false,
|
||||
}));
|
||||
}
|
||||
}, [segmentations, setIsMinimized]);
|
||||
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const added = segmentationService.EVENTS.SEGMENTATION_ADDED;
|
||||
@@ -64,6 +59,76 @@ export default function PanelSegmentation({ servicesManager, commandsManager })
|
||||
};
|
||||
}, []);
|
||||
|
||||
// temporary measure to not allow add segmentation when the selected viewport
|
||||
// is stack viewport
|
||||
useEffect(() => {
|
||||
const handleActiveViewportChange = viewportId => {
|
||||
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(
|
||||
viewportId || viewportGridService.getActiveViewportId()
|
||||
);
|
||||
|
||||
if (!displaySetUIDs) {
|
||||
return;
|
||||
}
|
||||
|
||||
const isReconstructable =
|
||||
displaySetUIDs?.some(displaySetUID => {
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetUID);
|
||||
return displaySet?.isReconstructable;
|
||||
}) || false;
|
||||
|
||||
if (isReconstructable) {
|
||||
setAddSegmentationClassName('');
|
||||
} else {
|
||||
setAddSegmentationClassName('ohif-disabled');
|
||||
}
|
||||
};
|
||||
|
||||
// Handle initial state
|
||||
handleActiveViewportChange();
|
||||
|
||||
const changedGrid = viewportGridService.EVENTS.ACTIVE_VIEWPORT_ID_CHANGED;
|
||||
const ready = viewportGridService.EVENTS.VIEWPORTS_READY;
|
||||
|
||||
const subsGrid = [];
|
||||
[ready, changedGrid].forEach(evt => {
|
||||
const { unsubscribe } = viewportGridService.subscribe(evt, ({ viewportId }) => {
|
||||
handleActiveViewportChange(viewportId);
|
||||
});
|
||||
|
||||
subsGrid.push(unsubscribe);
|
||||
});
|
||||
|
||||
const changedData = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
|
||||
|
||||
const subsData = [];
|
||||
[changedData].forEach(evt => {
|
||||
const { unsubscribe } = cornerstoneViewportService.subscribe(evt, () => {
|
||||
handleActiveViewportChange();
|
||||
});
|
||||
|
||||
subsData.push(unsubscribe);
|
||||
});
|
||||
|
||||
// Clean up
|
||||
return () => {
|
||||
subsGrid.forEach(unsub => unsub());
|
||||
subsData.forEach(unsub => unsub());
|
||||
};
|
||||
}, []);
|
||||
|
||||
const getToolGroupIds = segmentationId => {
|
||||
const toolGroupIds = segmentationService.getToolGroupIdsWithSegmentation(segmentationId);
|
||||
|
||||
return toolGroupIds;
|
||||
};
|
||||
|
||||
const onSegmentationAdd = async () => {
|
||||
commandsManager.runCommand('createEmptySegmentationForViewport', {
|
||||
viewportId: viewportGridService.getActiveViewportId(),
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentationClick = (segmentationId: string) => {
|
||||
segmentationService.setActiveSegmentationForToolGroup(segmentationId);
|
||||
};
|
||||
@@ -72,14 +137,12 @@ export default function PanelSegmentation({ servicesManager, commandsManager })
|
||||
segmentationService.remove(segmentationId);
|
||||
};
|
||||
|
||||
const getToolGroupIds = segmentationId => {
|
||||
const toolGroupIds = segmentationService.getToolGroupIdsWithSegmentation(segmentationId);
|
||||
|
||||
return toolGroupIds;
|
||||
const onSegmentAdd = segmentationId => {
|
||||
segmentationService.addSegment(segmentationId);
|
||||
};
|
||||
|
||||
const onSegmentClick = (segmentationId, segmentIndex) => {
|
||||
segmentationService.setActiveSegmentForSegmentation(segmentationId, segmentIndex);
|
||||
segmentationService.setActiveSegment(segmentationId, segmentIndex);
|
||||
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
@@ -101,7 +164,7 @@ export default function PanelSegmentation({ servicesManager, commandsManager })
|
||||
return;
|
||||
}
|
||||
|
||||
segmentationService.setSegmentLabelForSegmentation(segmentationId, segmentIndex, label);
|
||||
segmentationService.setSegmentLabel(segmentationId, segmentIndex, label);
|
||||
});
|
||||
};
|
||||
|
||||
@@ -126,18 +189,37 @@ export default function PanelSegmentation({ servicesManager, commandsManager })
|
||||
};
|
||||
|
||||
const onSegmentColorClick = (segmentationId, segmentIndex) => {
|
||||
// Todo: Implement color picker later
|
||||
return;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const segment = segmentation.segments[segmentIndex];
|
||||
const { color, opacity } = segment;
|
||||
|
||||
const rgbaColor = {
|
||||
r: color[0],
|
||||
g: color[1],
|
||||
b: color[2],
|
||||
a: opacity / 255.0,
|
||||
};
|
||||
|
||||
callColorPickerDialog(uiDialogService, rgbaColor, (newRgbaColor, actionId) => {
|
||||
if (actionId === 'cancel') {
|
||||
return;
|
||||
}
|
||||
|
||||
segmentationService.setSegmentRGBAColor(segmentationId, segmentIndex, [
|
||||
newRgbaColor.r,
|
||||
newRgbaColor.g,
|
||||
newRgbaColor.b,
|
||||
newRgbaColor.a * 255.0,
|
||||
]);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentDelete = (segmentationId, segmentIndex) => {
|
||||
// segmentationService.removeSegmentFromSegmentation(
|
||||
// segmentationId,
|
||||
// segmentIndex
|
||||
// );
|
||||
console.warn('not implemented yet');
|
||||
segmentationService.removeSegment(segmentationId, segmentIndex);
|
||||
};
|
||||
|
||||
// segment hide
|
||||
const onToggleSegmentVisibility = (segmentationId, segmentIndex) => {
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
const segmentInfo = segmentation.segments[segmentIndex];
|
||||
@@ -155,8 +237,28 @@ export default function PanelSegmentation({ servicesManager, commandsManager })
|
||||
});
|
||||
};
|
||||
|
||||
const onToggleSegmentLock = (segmentationId, segmentIndex) => {
|
||||
segmentationService.toggleSegmentLocked(segmentationId, segmentIndex);
|
||||
};
|
||||
|
||||
const onToggleSegmentationVisibility = segmentationId => {
|
||||
segmentationService.toggleSegmentationVisibility(segmentationId);
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
const isVisible = segmentation.isVisible;
|
||||
const segments = segmentation.segments;
|
||||
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
segments.forEach((segment, segmentIndex) => {
|
||||
segmentationService.setSegmentVisibility(
|
||||
segmentationId,
|
||||
segmentIndex,
|
||||
isVisible,
|
||||
toolGroupId
|
||||
);
|
||||
});
|
||||
});
|
||||
};
|
||||
|
||||
const _setSegmentationConfiguration = useCallback(
|
||||
@@ -169,56 +271,100 @@ export default function PanelSegmentation({ servicesManager, commandsManager })
|
||||
[segmentationService]
|
||||
);
|
||||
|
||||
const onSegmentationDownload = segmentationId => {
|
||||
commandsManager.runCommand('downloadSegmentation', {
|
||||
segmentationId,
|
||||
});
|
||||
};
|
||||
|
||||
const storeSegmentation = async segmentationId => {
|
||||
const datasources = extensionManager.getActiveDataSource();
|
||||
|
||||
const displaySetInstanceUIDs = await createReportAsync({
|
||||
servicesManager,
|
||||
getReport: () =>
|
||||
commandsManager.runCommand('storeSegmentation', {
|
||||
segmentationId,
|
||||
dataSource: datasources[0],
|
||||
}),
|
||||
reportType: 'Segmentation',
|
||||
});
|
||||
|
||||
// Show the exported report in the active viewport as read only (similar to SR)
|
||||
if (displaySetInstanceUIDs) {
|
||||
// clear the segmentation that we exported, similar to the storeMeasurement
|
||||
// where we remove the measurements and prompt again the user if they would like
|
||||
// to re-read the measurements in a SR read only viewport
|
||||
segmentationService.remove(segmentationId);
|
||||
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportId: viewportGridService.getActiveViewportId(),
|
||||
displaySetInstanceUIDs,
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
const onSegmentationDownloadRTSS = segmentationId => {
|
||||
commandsManager.runCommand('downloadRTSS', {
|
||||
segmentationId,
|
||||
});
|
||||
};
|
||||
|
||||
const SegmentationGroupTableComponent =
|
||||
components[configuration?.segmentationPanelMode] || SegmentationGroupTable;
|
||||
const allowAddSegment = configuration?.addSegment;
|
||||
const onSegmentationAddWrapper =
|
||||
configuration?.onSegmentationAdd && typeof configuration?.onSegmentationAdd === 'function'
|
||||
? configuration?.onSegmentationAdd
|
||||
: onSegmentationAdd;
|
||||
|
||||
return (
|
||||
<div className="mt-1 flex min-h-0 flex-auto flex-col justify-between">
|
||||
{/* show segmentation table */}
|
||||
{segmentations?.length ? (
|
||||
<SegmentationGroupTable
|
||||
title={t('Segmentations')}
|
||||
showAddSegmentation={false}
|
||||
segmentations={segmentations}
|
||||
isMinimized={isMinimized}
|
||||
activeSegmentationId={selectedSegmentationId || ''}
|
||||
onSegmentationClick={onSegmentationClick}
|
||||
onSegmentationDelete={onSegmentationDelete}
|
||||
onSegmentationEdit={onSegmentationEdit}
|
||||
onSegmentClick={onSegmentClick}
|
||||
onSegmentEdit={onSegmentEdit}
|
||||
disableEditing={disableEditing}
|
||||
onSegmentColorClick={onSegmentColorClick}
|
||||
onSegmentDelete={onSegmentDelete}
|
||||
onToggleSegmentVisibility={onToggleSegmentVisibility}
|
||||
onToggleSegmentationVisibility={onToggleSegmentationVisibility}
|
||||
onToggleMinimizeSegmentation={onToggleMinimizeSegmentation}
|
||||
segmentationConfig={{ initialConfig: segmentationConfiguration }}
|
||||
setRenderOutline={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderOutline', value)
|
||||
}
|
||||
setOutlineOpacityActive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'outlineOpacity', value)
|
||||
}
|
||||
setRenderFill={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderFill', value)
|
||||
}
|
||||
setRenderInactiveSegmentations={value =>
|
||||
_setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'renderInactiveSegmentations',
|
||||
value
|
||||
)
|
||||
}
|
||||
setOutlineWidthActive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'outlineWidthActive', value)
|
||||
}
|
||||
setFillAlpha={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'fillAlpha', value)
|
||||
}
|
||||
setFillAlphaInactive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'fillAlphaInactive', value)
|
||||
}
|
||||
/>
|
||||
) : null}
|
||||
</div>
|
||||
<SegmentationGroupTableComponent
|
||||
title={t('Segmentations')}
|
||||
segmentations={segmentations}
|
||||
disableEditing={configuration.disableEditing}
|
||||
activeSegmentationId={selectedSegmentationId || ''}
|
||||
onSegmentationAdd={onSegmentationAddWrapper}
|
||||
addSegmentationClassName={addSegmentationClassName}
|
||||
showAddSegment={allowAddSegment}
|
||||
onSegmentationClick={onSegmentationClick}
|
||||
onSegmentationDelete={onSegmentationDelete}
|
||||
onSegmentationDownload={onSegmentationDownload}
|
||||
onSegmentationDownloadRTSS={onSegmentationDownloadRTSS}
|
||||
storeSegmentation={storeSegmentation}
|
||||
onSegmentationEdit={onSegmentationEdit}
|
||||
onSegmentClick={onSegmentClick}
|
||||
onSegmentEdit={onSegmentEdit}
|
||||
onSegmentAdd={onSegmentAdd}
|
||||
onSegmentColorClick={onSegmentColorClick}
|
||||
onSegmentDelete={onSegmentDelete}
|
||||
onToggleSegmentVisibility={onToggleSegmentVisibility}
|
||||
onToggleSegmentLock={onToggleSegmentLock}
|
||||
onToggleSegmentationVisibility={onToggleSegmentationVisibility}
|
||||
showDeleteSegment={true}
|
||||
segmentationConfig={{ initialConfig: segmentationConfiguration }}
|
||||
setRenderOutline={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderOutline', value)
|
||||
}
|
||||
setOutlineOpacityActive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'outlineOpacity', value)
|
||||
}
|
||||
setRenderFill={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderFill', value)
|
||||
}
|
||||
setRenderInactiveSegmentations={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderInactiveSegmentations', value)
|
||||
}
|
||||
setOutlineWidthActive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'outlineWidthActive', value)
|
||||
}
|
||||
setFillAlpha={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'fillAlpha', value)
|
||||
}
|
||||
setFillAlphaInactive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'fillAlphaInactive', value)
|
||||
}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
@@ -0,0 +1,3 @@
|
||||
.chrome-picker {
|
||||
background: #090c29 !important;
|
||||
}
|
||||
@@ -0,0 +1,58 @@
|
||||
import React from 'react';
|
||||
import { Dialog } from '@ohif/ui';
|
||||
import { ChromePicker } from 'react-color';
|
||||
|
||||
import './colorPickerDialog.css';
|
||||
|
||||
function callColorPickerDialog(uiDialogService, rgbaColor, callback) {
|
||||
const dialogId = 'pick-color';
|
||||
|
||||
const onSubmitHandler = ({ action, value }) => {
|
||||
switch (action.id) {
|
||||
case 'save':
|
||||
callback(value.rgbaColor, action.id);
|
||||
break;
|
||||
case 'cancel':
|
||||
callback('', action.id);
|
||||
break;
|
||||
}
|
||||
uiDialogService.dismiss({ id: dialogId });
|
||||
};
|
||||
|
||||
if (uiDialogService) {
|
||||
uiDialogService.create({
|
||||
id: dialogId,
|
||||
centralize: true,
|
||||
isDraggable: false,
|
||||
showOverlay: true,
|
||||
content: Dialog,
|
||||
contentProps: {
|
||||
title: 'Segment Color',
|
||||
value: { rgbaColor },
|
||||
noCloseButton: true,
|
||||
onClose: () => uiDialogService.dismiss({ id: dialogId }),
|
||||
actions: [
|
||||
{ id: 'cancel', text: 'Cancel', type: 'primary' },
|
||||
{ id: 'save', text: 'Save', type: 'secondary' },
|
||||
],
|
||||
onSubmit: onSubmitHandler,
|
||||
body: ({ value, setValue }) => {
|
||||
const handleChange = color => {
|
||||
setValue({ rgbaColor: color.rgb });
|
||||
};
|
||||
|
||||
return (
|
||||
<ChromePicker
|
||||
color={value.rgbaColor}
|
||||
onChange={handleChange}
|
||||
presetColors={[]}
|
||||
width={300}
|
||||
/>
|
||||
);
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
export default callColorPickerDialog;
|
||||
@@ -0,0 +1,4 @@
|
||||
export enum SegmentationPanelMode {
|
||||
Expanded = 'expanded',
|
||||
Dropdown = 'dropdown',
|
||||
}
|
||||
@@ -1,73 +0,0 @@
|
||||
async function _hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportId: targetViewportId,
|
||||
servicesManager,
|
||||
}) {
|
||||
const { segmentationService, hangingProtocolService, viewportGridService } =
|
||||
servicesManager.services;
|
||||
|
||||
const displaySetInstanceUID = segDisplaySet.referencedDisplaySetInstanceUID;
|
||||
|
||||
let segmentationId = null;
|
||||
|
||||
// We need the hydration to notify panels about the new segmentation added
|
||||
const suppressEvents = false;
|
||||
|
||||
segmentationId = await segmentationService.createSegmentationForSEGDisplaySet(
|
||||
segDisplaySet,
|
||||
segmentationId,
|
||||
suppressEvents
|
||||
);
|
||||
|
||||
segmentationService.hydrateSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
|
||||
const { viewports } = viewportGridService.getState();
|
||||
|
||||
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
|
||||
targetViewportId,
|
||||
displaySetInstanceUID
|
||||
);
|
||||
|
||||
// Todo: fix this after we have a better way for stack viewport segmentations
|
||||
|
||||
// check every viewport in the viewports to see if the displaySetInstanceUID
|
||||
// is being displayed, if so we need to update the viewport to use volume viewport
|
||||
// (if already is not using it) since Cornerstone3D currently only supports
|
||||
// volume viewport for segmentation
|
||||
viewports.forEach((viewport, viewportId) => {
|
||||
if (targetViewportId === viewportId) {
|
||||
return;
|
||||
}
|
||||
|
||||
const shouldDisplaySeg = segmentationService.shouldRenderSegmentation(
|
||||
viewport.displaySetInstanceUIDs,
|
||||
segDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
if (shouldDisplaySeg) {
|
||||
updatedViewports.push({
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
|
||||
viewportOptions: {
|
||||
// Note: This is a hack to get the grid to re-render the OHIFCornerstoneViewport component
|
||||
// Used for segmentation hydration right now, since the logic to decide whether
|
||||
// a viewport needs to render a segmentation lives inside the CornerstoneViewportService
|
||||
// so we need to re-render (force update via change of the needsRerendering) so that React
|
||||
// does the diffing and decides we should render this again (although the id and element has not changed)
|
||||
// so that the CornerstoneViewportService can decide whether to render the segmentation or not.
|
||||
needsRerendering: true,
|
||||
initialImageOptions: {
|
||||
preset: 'middle',
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
// Do the entire update at once
|
||||
viewportGridService.setDisplaySetsForViewports(updatedViewports);
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
export default _hydrateSEGDisplaySet;
|
||||
@@ -0,0 +1,192 @@
|
||||
import { Enums, cache } from '@cornerstonejs/core';
|
||||
|
||||
/**
|
||||
* Updates the viewports in preparation for rendering segmentations.
|
||||
* Evaluates each viewport to determine which need modifications,
|
||||
* then for those viewports, changes them to a volume type and ensures
|
||||
* they are ready for segmentation rendering.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - ID of the viewport to be updated.
|
||||
* @param params.loadFn - Function to load the segmentation data.
|
||||
* @param params.servicesManager - The services manager.
|
||||
* @param params.displaySet - the display set.
|
||||
*
|
||||
* @returns Returns true upon successful update of viewports for segmentation rendering.
|
||||
*/
|
||||
async function updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
loadFn,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
}: {
|
||||
viewportId: string;
|
||||
loadFn: () => Promise<string>;
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
displaySet?: any;
|
||||
}) {
|
||||
const { cornerstoneViewportService, segmentationService, viewportGridService } =
|
||||
servicesManager.services;
|
||||
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const targetViewportId = viewport.viewportOptions.viewportId;
|
||||
|
||||
const referencedDisplaySetInstanceUID =
|
||||
displaySet?.referencedDisplaySetInstanceUID || viewport?.displaySetInstanceUIDs[0];
|
||||
|
||||
const updatedViewports = getUpdatedViewportsForSegmentation({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
});
|
||||
|
||||
// create Segmentation callback which needs to be waited until
|
||||
// the volume is created (if coming from stack)
|
||||
const createSegmentationForVolume = async () => {
|
||||
const segmentationId = await loadFn();
|
||||
segmentationService.hydrateSegmentation(segmentationId);
|
||||
};
|
||||
|
||||
// the reference volume that is used to draw the segmentation. so check if the
|
||||
// volume exists in the cache (the target Viewport is already a volume viewport)
|
||||
const volumeExists = Array.from(cache._volumeCache.keys()).some(volumeId =>
|
||||
volumeId.includes(referencedDisplaySetInstanceUID)
|
||||
);
|
||||
|
||||
updatedViewports.forEach(async viewport => {
|
||||
viewport.viewportOptions = {
|
||||
...viewport.viewportOptions,
|
||||
viewportType: displaySet?.Modality === 'RTSTRUCT' ? 'stack' : 'volume',
|
||||
needsRerendering: true,
|
||||
};
|
||||
const viewportId = viewport.viewportId;
|
||||
|
||||
const csViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const prevCamera = csViewport.getCamera();
|
||||
|
||||
// only run the createSegmentationForVolume for the targetViewportId
|
||||
// since the rest will get handled by cornerstoneViewportService
|
||||
if ((volumeExists || displaySet.Modality === 'RTSTRUCT') && viewportId === targetViewportId) {
|
||||
await createSegmentationForVolume();
|
||||
return;
|
||||
}
|
||||
|
||||
const createNewSegmentationWhenVolumeMounts = async evt => {
|
||||
const isTheActiveViewportVolumeMounted = evt.detail.volumeActors?.find(ac =>
|
||||
ac.uid.includes(referencedDisplaySetInstanceUID)
|
||||
);
|
||||
|
||||
// Note: make sure to re-grab the viewport since it might have changed
|
||||
// during the time it took for the volume to be mounted, for instance
|
||||
// the stack viewport has been changed to a volume viewport
|
||||
const volumeViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
volumeViewport.setCamera(prevCamera);
|
||||
|
||||
volumeViewport.element.removeEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
createNewSegmentationWhenVolumeMounts
|
||||
);
|
||||
|
||||
if (!isTheActiveViewportVolumeMounted) {
|
||||
// it means it is one of those other updated viewports so just update the camera
|
||||
return;
|
||||
}
|
||||
|
||||
if (viewportId === targetViewportId) {
|
||||
await createSegmentationForVolume();
|
||||
}
|
||||
};
|
||||
|
||||
csViewport.element.addEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
createNewSegmentationWhenVolumeMounts
|
||||
);
|
||||
});
|
||||
|
||||
// Set the displaySets for the viewports that require to be updated
|
||||
viewportGridService.setDisplaySetsForViewports(updatedViewports);
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
const getTargetViewport = ({ viewportId, viewportGridService }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
const targetViewportId = viewportId || activeViewportId;
|
||||
|
||||
const viewport = viewports.get(targetViewportId);
|
||||
|
||||
return viewport;
|
||||
};
|
||||
|
||||
/**
|
||||
* Retrieves a list of viewports that require updates in preparation for segmentation rendering.
|
||||
* This function evaluates viewports based on their compatibility with the provided segmentation's
|
||||
* frame of reference UID and appends them to the updated list if they should render the segmentation.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - the ID of the viewport to be updated.
|
||||
* @param params.servicesManager - The services manager
|
||||
* @param params.displaySet - the display set.
|
||||
*
|
||||
* @returns {Array} Returns an array of viewports that require updates for segmentation rendering.
|
||||
*/
|
||||
function getUpdatedViewportsForSegmentation({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
}: withAppTypes) {
|
||||
const { hangingProtocolService, displaySetService, segmentationService, viewportGridService } =
|
||||
servicesManager.services;
|
||||
|
||||
const { viewports, isHangingProtocolLayout } = viewportGridService.getState();
|
||||
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const targetViewportId = viewport.viewportOptions.viewportId;
|
||||
|
||||
const displaySetInstanceUIDs = viewports.get(targetViewportId).displaySetInstanceUIDs;
|
||||
|
||||
const referenceDisplaySetInstanceUID =
|
||||
displaySet?.referencedDisplaySetInstanceUID || displaySetInstanceUIDs[0];
|
||||
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(referenceDisplaySetInstanceUID);
|
||||
const segmentationFrameOfReferenceUID = referencedDisplaySet.instances[0].FrameOfReferenceUID;
|
||||
|
||||
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
|
||||
targetViewportId,
|
||||
referenceDisplaySetInstanceUID,
|
||||
isHangingProtocolLayout
|
||||
);
|
||||
|
||||
viewports.forEach((viewport, viewportId) => {
|
||||
if (
|
||||
targetViewportId === viewportId ||
|
||||
updatedViewports.find(v => v.viewportId === viewportId)
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
const shouldDisplaySeg = segmentationService.shouldRenderSegmentation(
|
||||
viewport.displaySetInstanceUIDs,
|
||||
segmentationFrameOfReferenceUID
|
||||
);
|
||||
|
||||
if (shouldDisplaySeg) {
|
||||
updatedViewports.push({
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
|
||||
viewportOptions: {
|
||||
viewportType: displaySet?.Modality === 'RTSTRUCT' ? 'stack' : 'volume',
|
||||
needsRerendering: true,
|
||||
},
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
return updatedViewports.filter(v => v.viewportOptions?.viewportType !== 'volume3d');
|
||||
}
|
||||
|
||||
export {
|
||||
updateViewportsForSegmentationRendering,
|
||||
getUpdatedViewportsForSegmentation,
|
||||
getTargetViewport,
|
||||
};
|
||||
@@ -1,7 +1,7 @@
|
||||
function createSEGToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools, {});
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
export default createSEGToolGroupAndAddTools;
|
||||
@@ -1,5 +1,4 @@
|
||||
import { ButtonEnums } from '@ohif/ui';
|
||||
import hydrateSEGDisplaySet from './_hydrateSEG';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
@@ -7,7 +6,13 @@ const RESPONSE = {
|
||||
HYDRATE_SEG: 5,
|
||||
};
|
||||
|
||||
function promptHydrateSEG({ servicesManager, segDisplaySet, viewportId, preHydrateCallbacks }) {
|
||||
function promptHydrateSEG({
|
||||
servicesManager,
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
preHydrateCallbacks,
|
||||
hydrateSEGDisplaySet,
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService } = servicesManager.services;
|
||||
|
||||
return new Promise(async function (resolve, reject) {
|
||||
@@ -21,7 +26,6 @@ function promptHydrateSEG({ servicesManager, segDisplaySet, viewportId, preHydra
|
||||
const isHydrated = await hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
@@ -59,6 +63,11 @@ function _askHydrate(uiViewportDialogService, viewportId) {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
onKeyPress: event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmit(RESPONSE.HYDRATE_SEG);
|
||||
}
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
@@ -1,22 +1,18 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import OHIF, { utils } from '@ohif/core';
|
||||
import { LoadingIndicatorTotalPercent, useViewportGrid, ViewportActionBar } from '@ohif/ui';
|
||||
import { LoadingIndicatorTotalPercent, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
|
||||
import createSEGToolGroupAndAddTools from '../utils/initSEGToolGroup';
|
||||
import promptHydrateSEG from '../utils/promptHydrateSEG';
|
||||
import hydrateSEGDisplaySet from '../utils/_hydrateSEG';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
|
||||
const { formatDate } = utils;
|
||||
const SEG_TOOLGROUP_BASE_NAME = 'SEGToolGroup';
|
||||
|
||||
function OHIFCornerstoneSEGViewport(props) {
|
||||
function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
viewportLabel,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
@@ -29,8 +25,8 @@ function OHIFCornerstoneSEGViewport(props) {
|
||||
displaySetService,
|
||||
toolGroupService,
|
||||
segmentationService,
|
||||
uiNotificationService,
|
||||
customizationService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const toolGroupId = `${SEG_TOOLGROUP_BASE_NAME}-${viewportId}`;
|
||||
@@ -115,16 +111,17 @@ function OHIFCornerstoneSEGViewport(props) {
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
}}
|
||||
onElementEnabled={onElementEnabled}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
onElementDisabled={onElementDisabled}
|
||||
// initialImageIndex={initialImageIndex}
|
||||
></Component>
|
||||
);
|
||||
}, [viewportId, segDisplaySet, toolGroupId]);
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
direction = direction === 'left' ? -1 : 1;
|
||||
const segmentationId = segDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
@@ -158,6 +155,7 @@ function OHIFCornerstoneSEGViewport(props) {
|
||||
viewportId,
|
||||
segDisplaySet,
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateSEGDisplaySet,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
@@ -172,14 +170,6 @@ function OHIFCornerstoneSEGViewport(props) {
|
||||
if (evt.segDisplaySet.displaySetInstanceUID === segDisplaySet.displaySetInstanceUID) {
|
||||
setSegIsLoading(false);
|
||||
}
|
||||
|
||||
if (evt.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message: 'Overlapping segments detected which is not currently supported',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
@@ -256,6 +246,69 @@ function OHIFCornerstoneSEGViewport(props) {
|
||||
};
|
||||
}, [segDisplaySet]);
|
||||
|
||||
const hydrateSEGDisplaySet = useCallback(
|
||||
({ segDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
|
||||
displaySets: [segDisplaySet],
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
[commandsManager]
|
||||
);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a SEG and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the SEG. This is
|
||||
// required if the user has changed the viewport (other viewport than SEG viewport)
|
||||
// presentation state (w/l and invert) and then opens the SEG. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
}, [hydrateSEGDisplaySet, segDisplaySet, storePresentationState, viewportId]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.setComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
isHydrated,
|
||||
onSegmentChange,
|
||||
onStatusClick,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
@@ -291,55 +344,8 @@ function OHIFCornerstoneSEGViewport(props) {
|
||||
SpacingBetweenSlices,
|
||||
} = referencedDisplaySetRef.current.metadata;
|
||||
|
||||
const onStatusClick = async () => {
|
||||
// Before hydrating a SEG and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the SEG. This is
|
||||
// required if the user has changed the viewport (other viewport than SEG viewport)
|
||||
// presentation state (w/l and invert) and then opens the SEG. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
};
|
||||
return (
|
||||
<>
|
||||
<ViewportActionBar
|
||||
onDoubleClick={evt => {
|
||||
evt.stopPropagation();
|
||||
evt.preventDefault();
|
||||
}}
|
||||
onArrowsClick={onSegmentChange}
|
||||
getStatusComponent={() => {
|
||||
return _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
});
|
||||
}}
|
||||
studyData={{
|
||||
label: viewportLabel,
|
||||
useAltStyling: true,
|
||||
studyDate: formatDate(StudyDate),
|
||||
seriesDescription: `SEG Viewport ${SeriesDescription}`,
|
||||
patientInformation: {
|
||||
patientName: PatientName ? OHIF.utils.formatPN(PatientName.Alphabetic) : '',
|
||||
patientSex: PatientSex || '',
|
||||
patientAge: PatientAge || '',
|
||||
MRN: PatientID || '',
|
||||
thickness: SliceThickness ? utils.roundNumber(SliceThickness, 2) : '',
|
||||
thicknessUnits: SliceThickness !== undefined ? 'mm' : '',
|
||||
spacing:
|
||||
SpacingBetweenSlices !== undefined ? utils.roundNumber(SpacingBetweenSlices, 2) : '',
|
||||
scanner: ManufacturerModelName || '',
|
||||
},
|
||||
}}
|
||||
/>
|
||||
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
{segIsLoading && (
|
||||
<LoadingIndicatorTotalPercent
|
||||
@@ -369,12 +375,18 @@ OHIFCornerstoneSEGViewport.defaultProps = {
|
||||
};
|
||||
|
||||
function _getReferencedDisplaySetMetadata(referencedDisplaySet, segDisplaySet) {
|
||||
const {
|
||||
SharedFunctionalGroupsSequence: [SharedFunctionalGroup],
|
||||
} = segDisplaySet.instance;
|
||||
const {
|
||||
PixelMeasuresSequence: [PixelMeasures],
|
||||
} = SharedFunctionalGroup;
|
||||
const { SharedFunctionalGroupsSequence } = segDisplaySet.instance;
|
||||
|
||||
const SharedFunctionalGroup = Array.isArray(SharedFunctionalGroupsSequence)
|
||||
? SharedFunctionalGroupsSequence[0]
|
||||
: SharedFunctionalGroupsSequence;
|
||||
|
||||
const { PixelMeasuresSequence } = SharedFunctionalGroup;
|
||||
|
||||
const PixelMeasures = Array.isArray(PixelMeasuresSequence)
|
||||
? PixelMeasuresSequence[0]
|
||||
: PixelMeasuresSequence;
|
||||
|
||||
const { SpacingBetweenSlices, SliceThickness } = PixelMeasures;
|
||||
|
||||
const image0 = referencedDisplaySet.images[0];
|
||||
|
||||
@@ -6,9 +6,6 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
@@ -26,23 +23,28 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
ToolTipMessage = () => <div>Click LOAD to load segmentation.</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">SEG</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
const StatusArea = () => {
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">SEG</span>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-sr",
|
||||
"version": "3.7.0-beta.73",
|
||||
"version": "3.8.2",
|
||||
"description": "OHIF extension for an SR Cornerstone Viewport",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -23,6 +23,8 @@
|
||||
"ohif-extension"
|
||||
],
|
||||
"scripts": {
|
||||
"clean": "shx rm -rf dist",
|
||||
"clean:deep": "yarn run clean && shx rm -rf node_modules",
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
|
||||
"dev:cornerstone": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
@@ -32,11 +34,11 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.7.0-beta.73",
|
||||
"@ohif/extension-cornerstone": "3.7.0-beta.73",
|
||||
"@ohif/extension-measurement-tracking": "3.7.0-beta.73",
|
||||
"@ohif/ui": "3.7.0-beta.73",
|
||||
"dcmjs": "^0.29.5",
|
||||
"@ohif/core": "3.8.2\n",
|
||||
"@ohif/extension-cornerstone": "3.8.2\n",
|
||||
"@ohif/extension-measurement-tracking": "3.8.2\n",
|
||||
"@ohif/ui": "3.8.2\n",
|
||||
"dcmjs": "^0.29.12",
|
||||
"dicom-parser": "^1.8.9",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
@@ -44,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.13.2",
|
||||
"@cornerstonejs/core": "^1.13.2",
|
||||
"@cornerstonejs/tools": "^1.13.2",
|
||||
"@cornerstonejs/adapters": "^1.77.6",
|
||||
"@cornerstonejs/core": "^1.77.6",
|
||||
"@cornerstonejs/tools": "^1.77.6",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
+13
-7
@@ -40,7 +40,9 @@ const _generateReport = (measurementData, additionalFindingTypes, options = {})
|
||||
return dataset;
|
||||
};
|
||||
|
||||
const commandsModule = ({}) => {
|
||||
const commandsModule = (props: withAppTypes) => {
|
||||
const { servicesManager } = props;
|
||||
const { customizationService } = servicesManager.services;
|
||||
const actions = {
|
||||
/**
|
||||
*
|
||||
@@ -55,7 +57,7 @@ const commandsModule = ({}) => {
|
||||
const reportBlob = dcmjs.data.datasetToBlob(srDataset);
|
||||
|
||||
//Create a URL for the binary.
|
||||
var objectUrl = URL.createObjectURL(reportBlob);
|
||||
const objectUrl = URL.createObjectURL(reportBlob);
|
||||
window.location.assign(objectUrl);
|
||||
},
|
||||
|
||||
@@ -95,7 +97,15 @@ const commandsModule = ({}) => {
|
||||
throw new Error('Invalid report, no content');
|
||||
}
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport);
|
||||
const onBeforeDicomStore =
|
||||
customizationService.getModeCustomization('onBeforeDicomStore')?.value;
|
||||
|
||||
let dicomDict;
|
||||
if (typeof onBeforeDicomStore === 'function') {
|
||||
dicomDict = onBeforeDicomStore({ measurementData, naturalizedReport });
|
||||
}
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport, null, dicomDict);
|
||||
|
||||
if (StudyInstanceUID) {
|
||||
dataSource.deleteStudyMetadataPromise(StudyInstanceUID);
|
||||
@@ -118,13 +128,9 @@ const commandsModule = ({}) => {
|
||||
const definitions = {
|
||||
downloadReport: {
|
||||
commandFn: actions.downloadReport,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
storeMeasurements: {
|
||||
commandFn: actions.storeMeasurements,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
};
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import { SOPClassHandlerName, SOPClassHandlerId } from './id';
|
||||
import { utils, classes, DisplaySetService, Types } from '@ohif/core';
|
||||
import addMeasurement from './utils/addMeasurement';
|
||||
import addDICOMSRDisplayAnnotation from './utils/addDICOMSRDisplayAnnotation';
|
||||
import isRehydratable from './utils/isRehydratable';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
@@ -85,7 +85,11 @@ function addInstances(instances: InstanceMetadata[], displaySetService: DisplayS
|
||||
* @param servicesManager is the services that can be used for creating
|
||||
* @returns The list of display sets created for the given instances object
|
||||
*/
|
||||
function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager) {
|
||||
function _getDisplaySetsFromSeries(
|
||||
instances,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager
|
||||
) {
|
||||
// If the series has no instances, stop here
|
||||
if (!instances || !instances.length) {
|
||||
throw new Error('No instances were provided');
|
||||
@@ -150,13 +154,37 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
function _load(displaySet, servicesManager, extensionManager) {
|
||||
async function _load(displaySet, servicesManager: AppTypes.ServicesManager, extensionManager) {
|
||||
const { displaySetService, measurementService } = servicesManager.services;
|
||||
const dataSources = extensionManager.getDataSources();
|
||||
const dataSource = dataSources[0];
|
||||
|
||||
const { ContentSequence } = displaySet.instance;
|
||||
|
||||
async function retrieveBulkData(obj, parentObj = null, key = null) {
|
||||
for (const prop in obj) {
|
||||
if (typeof obj[prop] === 'object' && obj[prop] !== null) {
|
||||
await retrieveBulkData(obj[prop], obj, prop);
|
||||
} else if (Array.isArray(obj[prop])) {
|
||||
await Promise.all(obj[prop].map(item => retrieveBulkData(item, obj, prop)));
|
||||
} else if (prop === 'BulkDataURI') {
|
||||
const value = await dataSource.retrieve.bulkDataURI({
|
||||
BulkDataURI: obj[prop],
|
||||
StudyInstanceUID: displaySet.instance.StudyInstanceUID,
|
||||
SeriesInstanceUID: displaySet.instance.SeriesInstanceUID,
|
||||
SOPInstanceUID: displaySet.instance.SOPInstanceUID,
|
||||
});
|
||||
if (parentObj && key) {
|
||||
parentObj[key] = new Float32Array(value);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (displaySet.isLoaded !== true) {
|
||||
await retrieveBulkData(ContentSequence);
|
||||
}
|
||||
|
||||
displaySet.referencedImages = _getReferencedImagesList(ContentSequence);
|
||||
displaySet.measurements = _getMeasurements(ContentSequence);
|
||||
|
||||
@@ -171,7 +199,12 @@ function _load(displaySet, servicesManager, extensionManager) {
|
||||
|
||||
// Check currently added displaySets and add measurements if the sources exist.
|
||||
displaySetService.activeDisplaySets.forEach(activeDisplaySet => {
|
||||
_checkIfCanAddMeasurementsToDisplaySet(displaySet, activeDisplaySet, dataSource);
|
||||
_checkIfCanAddMeasurementsToDisplaySet(
|
||||
displaySet,
|
||||
activeDisplaySet,
|
||||
dataSource,
|
||||
servicesManager
|
||||
);
|
||||
});
|
||||
|
||||
// Subscribe to new displaySets as the source may come in after.
|
||||
@@ -180,12 +213,23 @@ function _load(displaySet, servicesManager, extensionManager) {
|
||||
// If there are still some measurements that have not yet been loaded into cornerstone,
|
||||
// See if we can load them onto any of the new displaySets.
|
||||
displaySetsAdded.forEach(newDisplaySet => {
|
||||
_checkIfCanAddMeasurementsToDisplaySet(displaySet, newDisplaySet, dataSource);
|
||||
_checkIfCanAddMeasurementsToDisplaySet(
|
||||
displaySet,
|
||||
newDisplaySet,
|
||||
dataSource,
|
||||
servicesManager
|
||||
);
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
function _checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, newDisplaySet, dataSource) {
|
||||
function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
srDisplaySet,
|
||||
newDisplaySet,
|
||||
dataSource,
|
||||
servicesManager: AppTypes.ServicesManager
|
||||
) {
|
||||
const { customizationService } = servicesManager.services;
|
||||
let unloadedMeasurements = srDisplaySet.measurements.filter(
|
||||
measurement => measurement.loaded === false
|
||||
);
|
||||
@@ -195,12 +239,16 @@ function _checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, newDisplaySet, dat
|
||||
return;
|
||||
}
|
||||
|
||||
if (!newDisplaySet instanceof ImageSet) {
|
||||
if ((!newDisplaySet) instanceof ImageSet) {
|
||||
// This also filters out _this_ displaySet, as it is not an ImageSet.
|
||||
return;
|
||||
}
|
||||
|
||||
const { sopClassUids, images } = newDisplaySet;
|
||||
if (newDisplaySet.unsupported) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { sopClassUids } = newDisplaySet;
|
||||
|
||||
// Check if any have the newDisplaySet is the correct SOPClass.
|
||||
unloadedMeasurements = unloadedMeasurements.filter(measurement =>
|
||||
@@ -240,9 +288,37 @@ function _checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, newDisplaySet, dat
|
||||
|
||||
if (SOPInstanceUIDs.includes(SOPInstanceUID)) {
|
||||
for (let j = unloadedMeasurements.length - 1; j >= 0; j--) {
|
||||
const measurement = unloadedMeasurements[j];
|
||||
let measurement = unloadedMeasurements[j];
|
||||
|
||||
const onBeforeSRAddMeasurement = customizationService.getModeCustomization(
|
||||
'onBeforeSRAddMeasurement'
|
||||
)?.value;
|
||||
|
||||
if (typeof onBeforeSRAddMeasurement === 'function') {
|
||||
measurement = onBeforeSRAddMeasurement({
|
||||
measurement,
|
||||
StudyInstanceUID: srDisplaySet.StudyInstanceUID,
|
||||
SeriesInstanceUID: srDisplaySet.SeriesInstanceUID,
|
||||
});
|
||||
}
|
||||
|
||||
if (_measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frameNumber)) {
|
||||
addMeasurement(measurement, imageId, newDisplaySet.displaySetInstanceUID);
|
||||
const frame =
|
||||
(measurement.coords[0].ReferencedSOPSequence &&
|
||||
measurement.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber) ||
|
||||
1;
|
||||
|
||||
/** Add DICOMSRDisplay annotation for the SR viewport (only) */
|
||||
addDICOMSRDisplayAnnotation(measurement, imageId, frame);
|
||||
|
||||
/** Update measurement properties */
|
||||
measurement.loaded = true;
|
||||
measurement.imageId = imageId;
|
||||
measurement.displaySetInstanceUID = newDisplaySet.displaySetInstanceUID;
|
||||
measurement.ReferencedSOPInstanceUID =
|
||||
measurement.coords[0].ReferencedSOPSequence.ReferencedSOPInstanceUID;
|
||||
measurement.frameNumber = frame;
|
||||
delete measurement.coords;
|
||||
|
||||
unloadedMeasurements.splice(j, 1);
|
||||
}
|
||||
@@ -258,7 +334,7 @@ function _measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frame
|
||||
// Standard. But for now, we will support only one ReferenceFrameNumber.
|
||||
const ReferencedFrameNumber =
|
||||
(measurement.coords[0].ReferencedSOPSequence &&
|
||||
measurement.coords[0].ReferencedSOPSequence[0]?.ReferencedFrameNumber) ||
|
||||
measurement.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber) ||
|
||||
1;
|
||||
|
||||
if (frameNumber && Number(frameNumber) !== Number(ReferencedFrameNumber)) {
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import React from 'react';
|
||||
import getSopClassHandlerModule from './getSopClassHandlerModule';
|
||||
import getHangingProtocolModule, { srProtocol } from './getHangingProtocolModule';
|
||||
import { srProtocol } from './getHangingProtocolModule';
|
||||
import onModeEnter from './onModeEnter';
|
||||
import getCommandsModule from './commandsModule';
|
||||
import preRegistration from './init';
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
import {
|
||||
addTool,
|
||||
AngleTool,
|
||||
annotation,
|
||||
ArrowAnnotateTool,
|
||||
@@ -9,6 +8,7 @@ import {
|
||||
CircleROITool,
|
||||
LengthTool,
|
||||
PlanarFreehandROITool,
|
||||
RectangleROITool,
|
||||
} from '@cornerstonejs/tools';
|
||||
import DICOMSRDisplayTool from './tools/DICOMSRDisplayTool';
|
||||
import addToolInstance from './utils/addToolInstance';
|
||||
@@ -19,24 +19,25 @@ import toolNames from './tools/toolNames';
|
||||
* @param {object} configuration
|
||||
*/
|
||||
export default function init({ configuration = {} }: Types.Extensions.ExtensionParams): void {
|
||||
addTool(DICOMSRDisplayTool);
|
||||
addToolInstance(toolNames.SRLength, LengthTool, {});
|
||||
addToolInstance(toolNames.DICOMSRDisplay, DICOMSRDisplayTool);
|
||||
addToolInstance(toolNames.SRLength, LengthTool);
|
||||
addToolInstance(toolNames.SRBidirectional, BidirectionalTool);
|
||||
addToolInstance(toolNames.SREllipticalROI, EllipticalROITool);
|
||||
addToolInstance(toolNames.SRCircleROI, CircleROITool);
|
||||
addToolInstance(toolNames.SRArrowAnnotate, ArrowAnnotateTool);
|
||||
addToolInstance(toolNames.SRAngle, AngleTool);
|
||||
addToolInstance(toolNames.SRPlanarFreehandROI, PlanarFreehandROITool);
|
||||
addToolInstance(toolNames.SRRectangleROI, RectangleROITool);
|
||||
|
||||
// TODO - fix the SR display of Cobb Angle, as it joins the two lines
|
||||
addToolInstance(toolNames.SRCobbAngle, CobbAngleTool);
|
||||
// TODO - fix the rehydration of Freehand, as it throws an exception
|
||||
// on a missing polyline. The fix is probably in CS3D
|
||||
addToolInstance(toolNames.SRPlanarFreehandROI, PlanarFreehandROITool);
|
||||
|
||||
// Modify annotation tools to use dashed lines on SR
|
||||
const dashedLine = {
|
||||
lineDash: '4,4',
|
||||
};
|
||||
annotation.config.style.setToolGroupToolStyles('SRToolGroup', {
|
||||
[toolNames.DICOMSRDisplay]: dashedLine,
|
||||
SRLength: dashedLine,
|
||||
SRBidirectional: dashedLine,
|
||||
SREllipticalROI: dashedLine,
|
||||
@@ -45,6 +46,7 @@ export default function init({ configuration = {} }: Types.Extensions.ExtensionP
|
||||
SRCobbAngle: dashedLine,
|
||||
SRAngle: dashedLine,
|
||||
SRPlanarFreehandROI: dashedLine,
|
||||
SRRectangleROI: dashedLine,
|
||||
global: {},
|
||||
});
|
||||
}
|
||||
@@ -22,14 +22,14 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
}
|
||||
|
||||
_getTextBoxLinesFromLabels(labels) {
|
||||
// TODO -> max 3 for now (label + shortAxis + longAxis), need a generic solution for this!
|
||||
// TODO -> max 5 for now (label + shortAxis + longAxis), need a generic solution for this!
|
||||
|
||||
const labelLength = Math.min(labels.length, 3);
|
||||
const labelLength = Math.min(labels.length, 5);
|
||||
const lines = [];
|
||||
|
||||
for (let i = 0; i < labelLength; i++) {
|
||||
const labelEntry = labels[i];
|
||||
lines.push(`${_labelToShorthand(labelEntry.label)}${labelEntry.value}`);
|
||||
lines.push(`${_labelToShorthand(labelEntry.label)}: ${labelEntry.value}`);
|
||||
}
|
||||
|
||||
return lines;
|
||||
@@ -65,7 +65,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
|
||||
// Filter toolData to only render the data for the active SR.
|
||||
const filteredAnnotations = annotations.filter(annotation =>
|
||||
trackingUniqueIdentifiers.includes(annotation.data?.cachedStats?.TrackingUniqueIdentifier)
|
||||
trackingUniqueIdentifiers.includes(annotation.data?.TrackingUniqueIdentifier)
|
||||
);
|
||||
|
||||
if (!viewport._actors?.size) {
|
||||
@@ -77,20 +77,24 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
toolName: this.getToolName(),
|
||||
viewportId: enabledElement.viewport.id,
|
||||
};
|
||||
const { style: annotationStyle } = annotation.config;
|
||||
|
||||
for (let i = 0; i < filteredAnnotations.length; i++) {
|
||||
const annotation = filteredAnnotations[i];
|
||||
const annotationUID = annotation.annotationUID;
|
||||
const { renderableData } = annotation.data.cachedStats;
|
||||
const { cachedStats } = annotation.data;
|
||||
const { renderableData, TrackingUniqueIdentifier } = annotation.data;
|
||||
const { referencedImageId } = annotation.metadata;
|
||||
|
||||
styleSpecifier.annotationUID = annotationUID;
|
||||
|
||||
const groupStyle = annotationStyle.getToolGroupToolStyles(this.toolGroupId)[
|
||||
this.getToolName()
|
||||
];
|
||||
|
||||
const lineWidth = this.getStyle('lineWidth', styleSpecifier, annotation);
|
||||
const lineDash = this.getStyle('lineDash', styleSpecifier, annotation);
|
||||
const color =
|
||||
cachedStats.TrackingUniqueIdentifier === activeTrackingUniqueIdentifier
|
||||
TrackingUniqueIdentifier === activeTrackingUniqueIdentifier
|
||||
? 'rgb(0, 255, 0)'
|
||||
: this.getStyle('color', styleSpecifier, annotation);
|
||||
|
||||
@@ -98,6 +102,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
color,
|
||||
lineDash,
|
||||
lineWidth,
|
||||
...groupStyle,
|
||||
};
|
||||
|
||||
Object.keys(renderableData).forEach(GraphicType => {
|
||||
@@ -160,6 +165,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
const drawingOptions = {
|
||||
color: options.color,
|
||||
width: options.lineWidth,
|
||||
lineDash: options.lineDash,
|
||||
};
|
||||
let allCanvasCoordinates = [];
|
||||
renderableData.map((data, index) => {
|
||||
@@ -307,6 +313,7 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
{
|
||||
color: options.color,
|
||||
width: options.lineWidth,
|
||||
lineDash: options.lineDash,
|
||||
}
|
||||
);
|
||||
});
|
||||
@@ -339,7 +346,9 @@ export default class DICOMSRDisplayTool extends AnnotationTool {
|
||||
const textLines = this._getTextBoxLinesFromLabels(label);
|
||||
const canvasTextBoxCoords = utilities.drawing.getTextBoxCoordsCanvas(adaptedCanvasCoordinates);
|
||||
|
||||
annotation.data.handles.textBox.worldPosition = viewport.canvasToWorld(canvasTextBoxCoords);
|
||||
if (!annotation.data?.handles?.textBox?.worldPosition) {
|
||||
annotation.data.handles.textBox.worldPosition = viewport.canvasToWorld(canvasTextBoxCoords);
|
||||
}
|
||||
|
||||
const textBoxPosition = viewport.worldToCanvas(annotation.data.handles.textBox.worldPosition);
|
||||
|
||||
|
||||
+19
-37
@@ -1,15 +1,13 @@
|
||||
import { vec3 } from 'gl-matrix';
|
||||
import { Types, annotation } from '@cornerstonejs/tools';
|
||||
import { metaData, utilities, Types as csTypes } from '@cornerstonejs/core';
|
||||
|
||||
import toolNames from '../tools/toolNames';
|
||||
import SCOORD_TYPES from '../constants/scoordTypes';
|
||||
|
||||
const EPSILON = 1e-4;
|
||||
|
||||
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
|
||||
|
||||
export default function addMeasurement(measurement, imageId, displaySetInstanceUID) {
|
||||
// TODO -> Render rotated ellipse .
|
||||
export default function addDICOMSRDisplayAnnotation(measurement, imageId, frameNumber) {
|
||||
const toolName = toolNames.DICOMSRDisplay;
|
||||
|
||||
const measurementData = {
|
||||
@@ -27,59 +25,43 @@ export default function addMeasurement(measurement, imageId, displaySetInstanceU
|
||||
}
|
||||
|
||||
measurementData.renderableData[GraphicType].push(
|
||||
_getRenderableData(GraphicType, GraphicData, imageId, measurement.TrackingIdentifier)
|
||||
_getRenderableData(GraphicType, GraphicData, imageId)
|
||||
);
|
||||
});
|
||||
|
||||
// Use the metadata provider to grab its imagePlaneModule metadata
|
||||
const imagePlaneModule = metaData.get('imagePlaneModule', imageId);
|
||||
|
||||
const annotationManager = annotation.state.getAnnotationManager();
|
||||
|
||||
// Create Cornerstone3D Annotation from measurement
|
||||
const frameNumber =
|
||||
(measurement.coords[0].ReferencedSOPSequence &&
|
||||
measurement.coords[0].ReferencedSOPSequence[0]?.ReferencedFrameNumber) ||
|
||||
1;
|
||||
|
||||
/**
|
||||
* This annotation (DICOMSRDisplay) is only used by the SR viewport.
|
||||
* This is used before the annotation is hydrated. If hydrated the measurement will be added
|
||||
* to the measurement service and will be available for the other viewports.
|
||||
*/
|
||||
const SRAnnotation: Types.Annotation = {
|
||||
annotationUID: measurement.TrackingUniqueIdentifier,
|
||||
highlighted: false,
|
||||
isLocked: false,
|
||||
invalidated: false,
|
||||
metadata: {
|
||||
FrameOfReferenceUID: imagePlaneModule.frameOfReferenceUID,
|
||||
toolName: toolName,
|
||||
FrameOfReferenceUID: imagePlaneModule.frameOfReferenceUID,
|
||||
referencedImageId: imageId,
|
||||
},
|
||||
data: {
|
||||
label: measurement.labels,
|
||||
handles: {
|
||||
textBox: {},
|
||||
textBox: measurement.textBox ?? {},
|
||||
},
|
||||
cachedStats: {
|
||||
TrackingUniqueIdentifier: measurementData.TrackingUniqueIdentifier,
|
||||
renderableData: measurementData.renderableData,
|
||||
},
|
||||
frameNumber: frameNumber,
|
||||
cachedStats: {},
|
||||
TrackingUniqueIdentifier: measurementData.TrackingUniqueIdentifier,
|
||||
renderableData: measurementData.renderableData,
|
||||
frameNumber,
|
||||
},
|
||||
};
|
||||
|
||||
const annotationManager = annotation.state.getAnnotationManager();
|
||||
annotationManager.addAnnotation(SRAnnotation);
|
||||
|
||||
measurement.loaded = true;
|
||||
measurement.imageId = imageId;
|
||||
measurement.displaySetInstanceUID = displaySetInstanceUID;
|
||||
|
||||
// Remove the unneeded coord now its processed, but keep the SOPInstanceUID.
|
||||
// NOTE: We assume that each SCOORD in the MeasurementGroup maps onto one frame,
|
||||
// It'd be super weird if it didn't anyway as a SCOORD.
|
||||
measurement.ReferencedSOPInstanceUID =
|
||||
measurement.coords[0].ReferencedSOPSequence.ReferencedSOPInstanceUID;
|
||||
measurement.frameNumber = frameNumber;
|
||||
delete measurement.coords;
|
||||
}
|
||||
|
||||
function _getRenderableData(GraphicType, GraphicData, imageId, TrackingIdentifier) {
|
||||
const [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
|
||||
|
||||
function _getRenderableData(GraphicType, GraphicData, imageId) {
|
||||
let renderableData: csTypes.Point3[];
|
||||
|
||||
switch (GraphicType) {
|
||||
+12
-2
@@ -43,7 +43,7 @@ const convertSites = (codingValues, sites) => {
|
||||
*
|
||||
*/
|
||||
export default function hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, appConfig },
|
||||
{ servicesManager, extensionManager, appConfig }: withAppTypes,
|
||||
displaySetInstanceUID
|
||||
) {
|
||||
const annotationManager = CsAnnotation.state.getAnnotationManager();
|
||||
@@ -90,7 +90,7 @@ export default function hydrateStructuredReport(
|
||||
const datasetToUse = _mapLegacyDataSet(instance);
|
||||
|
||||
// Use dcmjs to generate toolState.
|
||||
const storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
|
||||
let storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
|
||||
datasetToUse,
|
||||
// NOTE: we need to pass in the imageIds to dcmjs since the we use them
|
||||
// for the imageToWorld transformation. The following assumes that the order
|
||||
@@ -101,6 +101,16 @@ export default function hydrateStructuredReport(
|
||||
metaData
|
||||
);
|
||||
|
||||
const onBeforeSRHydration =
|
||||
customizationService.getModeCustomization('onBeforeSRHydration')?.value;
|
||||
|
||||
if (typeof onBeforeSRHydration === 'function') {
|
||||
storedMeasurementByAnnotationType = onBeforeSRHydration({
|
||||
storedMeasurementByAnnotationType,
|
||||
displaySet,
|
||||
});
|
||||
}
|
||||
|
||||
// Filter what is found by DICOM SR to measurements we support.
|
||||
const mappingDefinitions = mappings.map(m => m.annotationType);
|
||||
const hydratableMeasurementsInSR = {};
|
||||
@@ -1,35 +1,31 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useContext, useEffect, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import OHIF, { utils, ServicesManager, ExtensionManager } from '@ohif/core';
|
||||
import { ExtensionManager } from '@ohif/core';
|
||||
|
||||
import { setTrackingUniqueIdentifiersForElement } from '../tools/modules/dicomSRModule';
|
||||
|
||||
import { Icon, Tooltip, useViewportGrid, ViewportActionBar } from '@ohif/ui';
|
||||
import { Icon, Tooltip, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
|
||||
import hydrateStructuredReport from '../utils/hydrateStructuredReport';
|
||||
import { useAppConfig } from '@state';
|
||||
|
||||
const { formatDate } = utils;
|
||||
import createReferencedImageDisplaySet from '../utils/createReferencedImageDisplaySet';
|
||||
|
||||
const MEASUREMENT_TRACKING_EXTENSION_ID = '@ohif/extension-measurement-tracking';
|
||||
|
||||
const SR_TOOLGROUP_BASE_NAME = 'SRToolGroup';
|
||||
|
||||
function OHIFCornerstoneSRViewport(props) {
|
||||
const {
|
||||
children,
|
||||
dataSource,
|
||||
displaySets,
|
||||
viewportLabel,
|
||||
viewportOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
function OHIFCornerstoneSRViewport(props: withAppTypes) {
|
||||
const { children, dataSource, displaySets, viewportOptions, servicesManager, extensionManager } =
|
||||
props;
|
||||
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
const { displaySetService, cornerstoneViewportService, measurementService } =
|
||||
servicesManager.services;
|
||||
const {
|
||||
displaySetService,
|
||||
cornerstoneViewportService,
|
||||
measurementService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
@@ -48,6 +44,8 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
const [element, setElement] = useState(null);
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const { t } = useTranslation('Common');
|
||||
|
||||
// Optional hook into tracking extension, if present.
|
||||
let trackedMeasurements;
|
||||
let sendTrackedMeasurementsEvent;
|
||||
@@ -128,6 +126,10 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
console.warn('More than one SOPClassUID in the same series is not yet supported.');
|
||||
}
|
||||
|
||||
// if (!srDisplaySet.measurements || !srDisplaySet.measurements.length) {
|
||||
// return;
|
||||
// }
|
||||
|
||||
_getViewportReferencedDisplaySetData(
|
||||
srDisplaySet,
|
||||
newMeasurementSelected,
|
||||
@@ -202,7 +204,10 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
// The positionIds for the viewport aren't meaningful for the child display sets
|
||||
positionIds: null,
|
||||
}}
|
||||
onElementEnabled={onElementEnabled}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
initialImageIndex={initialImageIndex}
|
||||
isJumpToMeasurementDisabled={true}
|
||||
></Component>
|
||||
@@ -213,18 +218,11 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
direction => {
|
||||
let newMeasurementSelected = measurementSelected;
|
||||
|
||||
if (direction === 'right') {
|
||||
newMeasurementSelected++;
|
||||
|
||||
if (newMeasurementSelected >= measurementCount) {
|
||||
newMeasurementSelected = 0;
|
||||
}
|
||||
} else {
|
||||
newMeasurementSelected--;
|
||||
|
||||
if (newMeasurementSelected < 0) {
|
||||
newMeasurementSelected = measurementCount - 1;
|
||||
}
|
||||
newMeasurementSelected += direction;
|
||||
if (newMeasurementSelected >= measurementCount) {
|
||||
newMeasurementSelected = 0;
|
||||
} else if (newMeasurementSelected < 0) {
|
||||
newMeasurementSelected = measurementCount - 1;
|
||||
}
|
||||
|
||||
setTrackingIdentifiers(newMeasurementSelected);
|
||||
@@ -240,7 +238,7 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
const onDisplaySetsRemovedSubscription = displaySetService.subscribe(
|
||||
displaySetService.EVENTS.DISPLAY_SETS_REMOVED,
|
||||
({ displaySetInstanceUIDs }) => {
|
||||
const activeViewport = viewports[activeViewportId];
|
||||
const activeViewport = viewports.get(activeViewportId);
|
||||
if (displaySetInstanceUIDs.includes(activeViewport.displaySetInstanceUID)) {
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportId: activeViewportId,
|
||||
@@ -263,12 +261,16 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
* if it is hydrated we don't even use the SR viewport.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (!srDisplaySet.isLoaded) {
|
||||
srDisplaySet.load();
|
||||
}
|
||||
const numMeasurements = srDisplaySet.measurements.length;
|
||||
setMeasurementCount(numMeasurements);
|
||||
}, [srDisplaySet]);
|
||||
const loadSR = async () => {
|
||||
if (!srDisplaySet.isLoaded) {
|
||||
await srDisplaySet.load();
|
||||
}
|
||||
const numMeasurements = srDisplaySet.measurements.length;
|
||||
setMeasurementCount(numMeasurements);
|
||||
updateViewport(measurementSelected);
|
||||
};
|
||||
loadSR();
|
||||
}, [dataSource, srDisplaySet]);
|
||||
|
||||
/**
|
||||
* Hook to update the tracking identifiers when the selected measurement changes or
|
||||
@@ -285,18 +287,50 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
* Todo: what is this, not sure what it does regarding the react aspect,
|
||||
* it is updating a local variable? which is not state.
|
||||
*/
|
||||
let isLocked = trackedMeasurements?.context?.trackedSeries?.length > 0;
|
||||
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
useEffect(() => {
|
||||
isLocked = trackedMeasurements?.context?.trackedSeries?.length > 0;
|
||||
setIsLocked(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
}, [trackedMeasurements]);
|
||||
|
||||
/**
|
||||
* Data fetching for the SR displaySet, which updates the measurements and
|
||||
* also gets the referenced image displaySet that SR is based on.
|
||||
*/
|
||||
useEffect(() => {
|
||||
updateViewport(measurementSelected);
|
||||
}, [dataSource, srDisplaySet]);
|
||||
viewportActionCornersService.setComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
srDisplaySet,
|
||||
viewportId,
|
||||
isRehydratable: srDisplaySet.isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
t,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
index: 0,
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onMeasurementChange}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
isLocked,
|
||||
onMeasurementChange,
|
||||
sendTrackedMeasurementsEvent,
|
||||
srDisplaySet,
|
||||
t,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
@@ -317,57 +351,8 @@ function OHIFCornerstoneSRViewport(props) {
|
||||
});
|
||||
}
|
||||
|
||||
const {
|
||||
PatientID,
|
||||
PatientName,
|
||||
PatientSex,
|
||||
PatientAge,
|
||||
SliceThickness,
|
||||
ManufacturerModelName,
|
||||
StudyDate,
|
||||
SeriesDescription,
|
||||
SpacingBetweenSlices,
|
||||
SeriesNumber,
|
||||
} = referencedDisplaySetMetadata;
|
||||
|
||||
// TODO -> disabled double click for now: onDoubleClick={_onDoubleClick}
|
||||
return (
|
||||
<>
|
||||
<ViewportActionBar
|
||||
onDoubleClick={evt => {
|
||||
evt.stopPropagation();
|
||||
evt.preventDefault();
|
||||
}}
|
||||
onArrowsClick={onMeasurementChange}
|
||||
getStatusComponent={() =>
|
||||
_getStatusComponent({
|
||||
srDisplaySet,
|
||||
viewportId,
|
||||
isTracked: false,
|
||||
isRehydratable: srDisplaySet.isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
})
|
||||
}
|
||||
studyData={{
|
||||
label: viewportLabel,
|
||||
useAltStyling: true,
|
||||
studyDate: formatDate(StudyDate),
|
||||
currentSeries: SeriesNumber,
|
||||
seriesDescription: SeriesDescription || '',
|
||||
patientInformation: {
|
||||
patientName: PatientName ? OHIF.utils.formatPN(PatientName.Alphabetic) : '',
|
||||
patientSex: PatientSex || '',
|
||||
patientAge: PatientAge || '',
|
||||
MRN: PatientID || '',
|
||||
thickness: SliceThickness ? `${SliceThickness.toFixed(2)}mm` : '',
|
||||
spacing:
|
||||
SpacingBetweenSlices !== undefined ? `${SpacingBetweenSlices.toFixed(2)}mm` : '',
|
||||
scanner: ManufacturerModelName || '',
|
||||
},
|
||||
}}
|
||||
/>
|
||||
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
{getCornerstoneViewport()}
|
||||
{childrenWithProps}
|
||||
@@ -384,8 +369,7 @@ OHIFCornerstoneSRViewport.propTypes = {
|
||||
viewportLabel: PropTypes.string,
|
||||
customProps: PropTypes.object,
|
||||
viewportOptions: PropTypes.object,
|
||||
viewportLabel: PropTypes.string,
|
||||
servicesManager: PropTypes.instanceOf(ServicesManager).isRequired,
|
||||
servicesManager: PropTypes.object.isRequired,
|
||||
extensionManager: PropTypes.instanceOf(ExtensionManager).isRequired,
|
||||
};
|
||||
|
||||
@@ -402,6 +386,13 @@ async function _getViewportReferencedDisplaySetData(
|
||||
const measurement = measurements[measurementSelected];
|
||||
|
||||
const { displaySetInstanceUID } = measurement;
|
||||
if (!displaySet.keyImageDisplaySet) {
|
||||
// Create a new display set, and preserve a reference to it here,
|
||||
// so that it can be re-displayed and shown inside the SR viewport.
|
||||
// This is only for ease of redisplay - the display set is stored in the
|
||||
// usual manner in the display set service.
|
||||
displaySet.keyImageDisplaySet = createReferencedImageDisplaySet(displaySetService, displaySet);
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
@@ -429,6 +420,7 @@ function _getStatusComponent({
|
||||
isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
t,
|
||||
}) {
|
||||
const handleMouseUp = () => {
|
||||
sendTrackedMeasurementsEvent('HYDRATE_SR', {
|
||||
@@ -437,7 +429,6 @@ function _getStatusComponent({
|
||||
});
|
||||
};
|
||||
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
// 1 - Incompatible
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -0,0 +1,54 @@
|
||||
const webpack = require('webpack');
|
||||
const { merge } = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.base.js');
|
||||
const MiniCssExtractPlugin = require('mini-css-extract-plugin');
|
||||
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, '../');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
const ENTRY = {
|
||||
app: `${SRC_DIR}/index.ts`,
|
||||
};
|
||||
|
||||
const outputName = `ohif-${pkg.name.split('/').pop()}`;
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR, ENTRY });
|
||||
|
||||
return merge(commonConfig, {
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'ohif-extension-cornerstone',
|
||||
libraryTarget: 'umd',
|
||||
filename: pkg.main,
|
||||
},
|
||||
externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],
|
||||
plugins: [
|
||||
new webpack.optimize.LimitChunkCountPlugin({
|
||||
maxChunks: 1,
|
||||
}),
|
||||
new MiniCssExtractPlugin({
|
||||
filename: `./dist/${outputName}.css`,
|
||||
chunkFilename: `./dist/${outputName}.css`,
|
||||
}),
|
||||
],
|
||||
});
|
||||
};
|
||||
@@ -0,0 +1,231 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [3.8.2](https://github.com/OHIF/Viewers/compare/v3.8.1...v3.8.2) (2024-06-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [3.8.1](https://github.com/OHIF/Viewers/compare/v3.8.0...v3.8.1) (2024-06-11)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **crosshairs:** reset angle, position, and slabthickness for crosshairs when reset viewport tool is used ([#4113](https://github.com/OHIF/Viewers/issues/4113)) ([2d4e049](https://github.com/OHIF/Viewers/commit/2d4e049d8a54ca25c9dc02f29f2e53a6968d82e1))
|
||||
* dicom json for orthanc by Update package versions for [@cornerstonejs](https://github.com/cornerstonejs) dependencies ([#4165](https://github.com/OHIF/Viewers/issues/4165)) ([9f5165d](https://github.com/OHIF/Viewers/commit/9f5165de47ed547919683498cfae87909de94786))
|
||||
* **segmentation:** Address issue where segmentation creation failed on layout change ([#4153](https://github.com/OHIF/Viewers/issues/4153)) ([1b290bd](https://github.com/OHIF/Viewers/commit/1b290bdaa1a0ba750a4e5f539a51a636de529240))
|
||||
* **us:** logic for color conversion ([b7ebb0a](https://github.com/OHIF/Viewers/commit/b7ebb0aa8f814427045b7d5e7568dc0298ab0973))
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **typings:** Enhance typing support with withAppTypes and custom services throughout OHIF ([#4090](https://github.com/OHIF/Viewers/issues/4090)) ([3539e04](https://github.com/OHIF/Viewers/commit/3539e040193369b8011254d0c67804ef67d83a6c))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.93...v3.8.0) (2024-04-29)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.92...v3.8.0-beta.93) (2024-04-29)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **toolbox:** Preserve user-specified tool state and streamline command execution ([#4063](https://github.com/OHIF/Viewers/issues/4063)) ([f1a736d](https://github.com/OHIF/Viewers/commit/f1a736d1934733a434cb87b2c284907a3122403f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.91...v3.8.0-beta.92) (2024-04-28)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **bugs:** fix patient header for doc, track ball rotate resize observer and add segmentation button not being enabled on viewport data change ([#4068](https://github.com/OHIF/Viewers/issues/4068)) ([c09311d](https://github.com/OHIF/Viewers/commit/c09311d3b7df05fcd00a9f36a7233e9d7e5589d0))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.90...v3.8.0-beta.91) (2024-04-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.89...v3.8.0-beta.90) (2024-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.88...v3.8.0-beta.89) (2024-04-22)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **viewport-webworker-segmentation:** Resolve issues with viewport detection, webworker termination, and segmentation panel layout change ([#4059](https://github.com/OHIF/Viewers/issues/4059)) ([52a0c59](https://github.com/OHIF/Viewers/commit/52a0c59294a4161fcca0a6708855549034849951))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.87...v3.8.0-beta.88) (2024-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.86...v3.8.0-beta.87) (2024-04-19)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **tmtv-mode:** Add Brush tools and move SUV peak calculation to web worker ([#4053](https://github.com/OHIF/Viewers/issues/4053)) ([8192e34](https://github.com/OHIF/Viewers/commit/8192e348eca993fec331d4963efe88f9a730eceb))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.85...v3.8.0-beta.86) (2024-04-19)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **layouts:** and fix thumbnail in touch and update migration guide for 3.8 release ([#4052](https://github.com/OHIF/Viewers/issues/4052)) ([d250d04](https://github.com/OHIF/Viewers/commit/d250d04580883446fcb8d748b2a97c5c198922af))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.84...v3.8.0-beta.85) (2024-04-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.83...v3.8.0-beta.84) (2024-04-18)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **bugs:** and replace seriesInstanceUID and seriesInstanceUIDs URL with seriesInstanceUIDs ([#4049](https://github.com/OHIF/Viewers/issues/4049)) ([da7c1a5](https://github.com/OHIF/Viewers/commit/da7c1a5d8c54bfa1d3f97bbc500386bf76e7fd9d))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.82...v3.8.0-beta.83) (2024-04-18)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **bugs:** enhancements and bug fixes - final ([#4048](https://github.com/OHIF/Viewers/issues/4048)) ([170bb96](https://github.com/OHIF/Viewers/commit/170bb96983082c39b22b7352e0c54aacf3e73b02))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.81...v3.8.0-beta.82) (2024-04-17)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **bugs:** enhancements and bug fixes - more ([#4043](https://github.com/OHIF/Viewers/issues/4043)) ([3754c22](https://github.com/OHIF/Viewers/commit/3754c224b4dab28182adb0a41e37d890942144d8))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.80...v3.8.0-beta.81) (2024-04-16)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **viewport:** Reset viewport state and fix CINE looping, thumbnail resolution, and dynamic tool settings ([#4037](https://github.com/OHIF/Viewers/issues/4037)) ([f99a0bf](https://github.com/OHIF/Viewers/commit/f99a0bfb31434aa137bbb3ed1f9eef1dfcc09025))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.79...v3.8.0-beta.80) (2024-04-16)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **bugs:** enhancements and bug fixes ([#4036](https://github.com/OHIF/Viewers/issues/4036)) ([e80fc6f](https://github.com/OHIF/Viewers/commit/e80fc6f47708e1d6b1a1e1de438196a4b74ec637))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.78...v3.8.0-beta.79) (2024-04-10)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **SM:** remove SM measurements from measurement panel ([#4022](https://github.com/OHIF/Viewers/issues/4022)) ([df49a65](https://github.com/OHIF/Viewers/commit/df49a653be61a93f6e9fb3663aabe9775c31fd13))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.77...v3.8.0-beta.78) (2024-04-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.76...v3.8.0-beta.77) (2024-04-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.75...v3.8.0-beta.76) (2024-04-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.74...v3.8.0-beta.75) (2024-04-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.8.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.8.0-beta.73...v3.8.0-beta.74) (2024-04-10)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **4D:** Add 4D dynamic volume rendering and new pre-clinical 4d pt/ct mode ([#3664](https://github.com/OHIF/Viewers/issues/3664)) ([d57e8bc](https://github.com/OHIF/Viewers/commit/d57e8bc1571c6da4effaa492ee2d162c552365a2))
|
||||
@@ -0,0 +1,20 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2023 cornerstone-dynamic-volume ()
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy of
|
||||
this software and associated documentation files (the "Software"), to deal in
|
||||
the Software without restriction, including without limitation the rights to
|
||||
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
|
||||
the Software, and to permit persons to whom the Software is furnished to do so,
|
||||
subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
|
||||
FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
|
||||
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
|
||||
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
|
||||
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
||||
@@ -0,0 +1,8 @@
|
||||
# cornerstone-dynamic-volume
|
||||
## Description
|
||||
|
||||
## Author
|
||||
OHIF
|
||||
|
||||
## License
|
||||
MIT
|
||||
@@ -0,0 +1 @@
|
||||
module.exports = require('../../babel.config.js');
|
||||
@@ -0,0 +1,50 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dynamic-volume",
|
||||
"version": "3.8.2",
|
||||
"description": "OHIF extension for 4D volumes data",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/ohif-extension-cornerstone-dynamic-volume.umd.js",
|
||||
"module": "src/index.ts",
|
||||
"exports": {
|
||||
".": "./src/index.ts",
|
||||
"./types": "./src/types/index.ts"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"clean": "shx rm -rf dist",
|
||||
"clean:deep": "yarn run clean && shx rm -rf node_modules",
|
||||
"start": "yarn run dev",
|
||||
"test:unit": "jest --watchAll",
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.8.2\n",
|
||||
"@ohif/extension-cornerstone": "3.8.2\n",
|
||||
"@ohif/extension-default": "3.8.2\n",
|
||||
"@ohif/i18n": "3.8.2\n",
|
||||
"@ohif/ui": "3.8.2\n",
|
||||
"dcmjs": "^0.29.5",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^17.0.2"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/core": "^1.77.6",
|
||||
"@cornerstonejs/streaming-image-volume-loader": "^1.77.6",
|
||||
"@cornerstonejs/tools": "^1.77.6",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,3 @@
|
||||
import updateSegmentationsChartDisplaySet from './updateSegmentationsChartDisplaySet';
|
||||
|
||||
export { updateSegmentationsChartDisplaySet };
|
||||
+281
@@ -0,0 +1,281 @@
|
||||
import { DicomMetadataStore, utils } from '@ohif/core';
|
||||
|
||||
import * as cs from '@cornerstonejs/core';
|
||||
import * as csTools from '@cornerstonejs/tools';
|
||||
|
||||
const CHART_MODALITY = 'CHT';
|
||||
const SEG_CHART_INSTANCE_UID = utils.guid();
|
||||
|
||||
// Private SOPClassUid for chart data
|
||||
const ChartDataSOPClassUid = '1.9.451.13215.7.3.2.7.6.1';
|
||||
|
||||
const { utilities: csToolsUtils } = csTools;
|
||||
|
||||
function _getDateTimeStr() {
|
||||
const now = new Date();
|
||||
const date =
|
||||
now.getFullYear() + ('0' + now.getUTCMonth()).slice(-2) + ('0' + now.getUTCDate()).slice(-2);
|
||||
const time =
|
||||
('0' + now.getUTCHours()).slice(-2) +
|
||||
('0' + now.getUTCMinutes()).slice(-2) +
|
||||
('0' + now.getUTCSeconds()).slice(-2);
|
||||
|
||||
return { date, time };
|
||||
}
|
||||
|
||||
function _getTimePointsDataByTagName(volume, timePointsTag) {
|
||||
const uniqueTimePoints = volume.imageIds.reduce((timePoints, imageId) => {
|
||||
const instance = DicomMetadataStore.getInstanceByImageId(imageId);
|
||||
const timePointValue = instance[timePointsTag];
|
||||
|
||||
if (timePointValue !== undefined) {
|
||||
timePoints.add(timePointValue);
|
||||
}
|
||||
|
||||
return timePoints;
|
||||
}, new Set());
|
||||
|
||||
return Array.from(uniqueTimePoints).sort((a: number, b: number) => a - b);
|
||||
}
|
||||
|
||||
function _convertTimePointsUnit(timePoints, timePointsUnit) {
|
||||
const validUnits = ['ms', 's', 'm', 'h'];
|
||||
const divisors = [1000, 60, 60];
|
||||
const currentUnitIndex = validUnits.indexOf(timePointsUnit);
|
||||
let divisor = 1;
|
||||
|
||||
if (currentUnitIndex !== -1) {
|
||||
for (let i = currentUnitIndex; i < validUnits.length - 1; i++) {
|
||||
const newDivisor = divisor * divisors[i];
|
||||
const greaterThanDivisorCount = timePoints.filter(timePoint => timePoint > newDivisor).length;
|
||||
|
||||
// Change the scale only if more than 50% of the time points are
|
||||
// greater than the new divisor.
|
||||
if (greaterThanDivisorCount <= timePoints.length / 2) {
|
||||
break;
|
||||
}
|
||||
|
||||
divisor = newDivisor;
|
||||
timePointsUnit = validUnits[i + 1];
|
||||
}
|
||||
|
||||
if (divisor > 1) {
|
||||
timePoints = timePoints.map(timePoint => timePoint / divisor);
|
||||
}
|
||||
}
|
||||
|
||||
return { timePoints, timePointsUnit };
|
||||
}
|
||||
|
||||
// It currently supports only one tag but a few other will be added soon
|
||||
// Supported 4D Tags
|
||||
// (0018,1060) Trigger Time [NOK]
|
||||
// (0018,0081) Echo Time [NOK]
|
||||
// (0018,0086) Echo Number [NOK]
|
||||
// (0020,0100) Temporal Position Identifier [NOK]
|
||||
// (0054,1300) FrameReferenceTime [OK]
|
||||
function _getTimePointsData(volume) {
|
||||
const timePointsTags = {
|
||||
FrameReferenceTime: {
|
||||
unit: 'ms',
|
||||
},
|
||||
};
|
||||
|
||||
const timePointsTagNames = Object.keys(timePointsTags);
|
||||
let timePoints;
|
||||
let timePointsUnit;
|
||||
|
||||
for (let i = 0; i < timePointsTagNames.length; i++) {
|
||||
const tagName = timePointsTagNames[i];
|
||||
const curTimePoints = _getTimePointsDataByTagName(volume, tagName);
|
||||
|
||||
if (curTimePoints.length) {
|
||||
timePoints = curTimePoints;
|
||||
timePointsUnit = timePointsTags[tagName].unit;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
if (!timePoints.length) {
|
||||
const concatTagNames = timePointsTagNames.join(', ');
|
||||
|
||||
throw new Error(`Could not extract time points data for the following tags: ${concatTagNames}`);
|
||||
}
|
||||
|
||||
const convertedTimePoints = _convertTimePointsUnit(timePoints, timePointsUnit);
|
||||
|
||||
timePoints = convertedTimePoints.timePoints;
|
||||
timePointsUnit = convertedTimePoints.timePointsUnit;
|
||||
|
||||
return { timePoints, timePointsUnit };
|
||||
}
|
||||
|
||||
function _getSegmentationData(segmentation, volumesTimePointsCache, displaySetService) {
|
||||
const displaySets = displaySetService.getActiveDisplaySets();
|
||||
|
||||
const dynamic4DDisplaySet = displaySets.find(displaySet => {
|
||||
const anInstance = displaySet.instances?.[0];
|
||||
|
||||
if (anInstance) {
|
||||
return (
|
||||
anInstance.FrameReferenceTime !== undefined || anInstance.NumberOfTimeSlices !== undefined
|
||||
);
|
||||
}
|
||||
|
||||
return false;
|
||||
});
|
||||
|
||||
// const referencedDynamicVolume = cs.cache.getVolume(dynamic4DDisplaySet.displaySetInstanceUID);
|
||||
let volumeCacheKey: string | undefined;
|
||||
const volumeId = dynamic4DDisplaySet.displaySetInstanceUID;
|
||||
|
||||
for (const [key] of cs.cache._volumeCache) {
|
||||
if (key.includes(volumeId)) {
|
||||
volumeCacheKey = key;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
let referencedDynamicVolume;
|
||||
if (volumeCacheKey) {
|
||||
referencedDynamicVolume = cs.cache.getVolume(volumeCacheKey);
|
||||
}
|
||||
|
||||
const { StudyInstanceUID, StudyDescription } = DicomMetadataStore.getInstanceByImageId(
|
||||
referencedDynamicVolume.imageIds[0]
|
||||
);
|
||||
|
||||
const [timeData, _] = csToolsUtils.dynamicVolume.getDataInTime(referencedDynamicVolume, {
|
||||
maskVolumeId: segmentation.id,
|
||||
}) as number[][];
|
||||
|
||||
const pixelCount = timeData.length;
|
||||
|
||||
if (pixelCount === 0) {
|
||||
return [];
|
||||
}
|
||||
|
||||
// since we only use one segmentation representation per segmentationId
|
||||
// it is fine to pick the first one
|
||||
const segmentationRepresentations = csTools.segmentation.state.getSegmentationIdRepresentations(
|
||||
segmentation.id
|
||||
);
|
||||
|
||||
const segmentationRepresentationUID =
|
||||
segmentationRepresentations[0].segmentationRepresentationUID;
|
||||
|
||||
const toolGroupId = csTools.segmentation.state.getToolGroupIdFromSegmentationRepresentationUID(
|
||||
segmentationRepresentationUID
|
||||
);
|
||||
|
||||
// Todo: this is useless we should be able to grab color with just segRepUID and segmentIndex
|
||||
const color = csTools.segmentation.config.color.getColorForSegmentIndex(
|
||||
toolGroupId,
|
||||
segmentationRepresentationUID,
|
||||
1 // segmentIndex
|
||||
);
|
||||
|
||||
const hexColor = cs.utilities.color.rgbToHex(...color);
|
||||
let timePointsData = volumesTimePointsCache.get(referencedDynamicVolume);
|
||||
|
||||
if (!timePointsData) {
|
||||
timePointsData = _getTimePointsData(referencedDynamicVolume);
|
||||
volumesTimePointsCache.set(referencedDynamicVolume, timePointsData);
|
||||
}
|
||||
|
||||
const { timePoints, timePointsUnit } = timePointsData;
|
||||
|
||||
if (timePoints.length !== timeData[0].length) {
|
||||
throw new Error('Invalid number of time points returned');
|
||||
}
|
||||
|
||||
const timepointsCount = timePoints.length;
|
||||
const chartSeriesData = new Array(timepointsCount);
|
||||
|
||||
for (let i = 0; i < timepointsCount; i++) {
|
||||
const average = timeData.reduce((acc, cur) => acc + cur[i] / pixelCount, 0);
|
||||
|
||||
chartSeriesData[i] = [timePoints[i], average];
|
||||
}
|
||||
|
||||
return {
|
||||
StudyInstanceUID,
|
||||
StudyDescription,
|
||||
chartData: {
|
||||
series: {
|
||||
label: segmentation.label,
|
||||
points: chartSeriesData,
|
||||
color: hexColor,
|
||||
},
|
||||
axis: {
|
||||
x: {
|
||||
label: `Time (${timePointsUnit})`,
|
||||
},
|
||||
y: {
|
||||
label: `Vl (Bq/ml)`,
|
||||
},
|
||||
},
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
function _getInstanceFromSegmentations(segmentations, displaySetService) {
|
||||
if (!segmentations.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const volumesTimePointsCache = new WeakMap();
|
||||
const segmentationsData = segmentations.map(segmentation =>
|
||||
_getSegmentationData(segmentation, volumesTimePointsCache, displaySetService)
|
||||
);
|
||||
|
||||
const { date: seriesDate, time: seriesTime } = _getDateTimeStr();
|
||||
const series = segmentationsData.reduce((allSeries, curSegData) => {
|
||||
return [...allSeries, curSegData.chartData.series];
|
||||
}, []);
|
||||
|
||||
const instance = {
|
||||
SOPClassUID: ChartDataSOPClassUid,
|
||||
Modality: CHART_MODALITY,
|
||||
SOPInstanceUID: utils.guid(),
|
||||
SeriesDate: seriesDate,
|
||||
SeriesTime: seriesTime,
|
||||
SeriesInstanceUID: SEG_CHART_INSTANCE_UID,
|
||||
StudyInstanceUID: segmentationsData[0].StudyInstanceUID,
|
||||
StudyDescription: segmentationsData[0].StudyDescription,
|
||||
SeriesNumber: 100,
|
||||
SeriesDescription: 'Segmentation chart series data',
|
||||
chartData: {
|
||||
series,
|
||||
axis: { ...segmentationsData[0].chartData.axis },
|
||||
},
|
||||
};
|
||||
|
||||
const seriesMetadata = {
|
||||
StudyInstanceUID: instance.StudyInstanceUID,
|
||||
StudyDescription: instance.StudyDescription,
|
||||
SeriesInstanceUID: instance.SeriesInstanceUID,
|
||||
SeriesDescription: instance.SeriesDescription,
|
||||
SeriesNumber: instance.SeriesNumber,
|
||||
SeriesTime: instance.SeriesTime,
|
||||
SOPClassUID: instance.SOPClassUID,
|
||||
Modality: instance.Modality,
|
||||
};
|
||||
|
||||
return { seriesMetadata, instance };
|
||||
}
|
||||
|
||||
function updateSegmentationsChartDisplaySet({ servicesManager }: withAppTypes): void {
|
||||
const { segmentationService, displaySetService } = servicesManager.services;
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
const { seriesMetadata, instance } =
|
||||
_getInstanceFromSegmentations(segmentations, displaySetService) ?? {};
|
||||
|
||||
if (seriesMetadata && instance) {
|
||||
// An event is triggered after adding the instance and the displaySet is created
|
||||
DicomMetadataStore.addSeriesMetadata([seriesMetadata], true);
|
||||
DicomMetadataStore.addInstances([instance], true);
|
||||
}
|
||||
}
|
||||
|
||||
export { updateSegmentationsChartDisplaySet as default };
|
||||
@@ -0,0 +1,407 @@
|
||||
import * as importedActions from './actions';
|
||||
import { utilities, Enums } from '@cornerstonejs/tools';
|
||||
import { cache } from '@cornerstonejs/core';
|
||||
|
||||
const LABELMAP = Enums.SegmentationRepresentations.Labelmap;
|
||||
|
||||
const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
const services = servicesManager.services;
|
||||
const { displaySetService, viewportGridService, segmentationService } = services;
|
||||
|
||||
const actions = {
|
||||
...importedActions,
|
||||
getDynamic4DDisplaySet: () => {
|
||||
const displaySets = displaySetService.getActiveDisplaySets();
|
||||
|
||||
const dynamic4DDisplaySet = displaySets.find(displaySet => {
|
||||
const anInstance = displaySet.instances?.[0];
|
||||
|
||||
if (anInstance) {
|
||||
return (
|
||||
anInstance.FrameReferenceTime !== undefined ||
|
||||
anInstance.NumberOfTimeSlices !== undefined ||
|
||||
anInstance.TemporalPositionIdentifier !== undefined
|
||||
);
|
||||
}
|
||||
|
||||
return false;
|
||||
});
|
||||
|
||||
return dynamic4DDisplaySet;
|
||||
},
|
||||
getComputedDisplaySets: () => {
|
||||
const displaySetCache = displaySetService.getDisplaySetCache();
|
||||
const cachedDisplaySets = [...displaySetCache.values()];
|
||||
const computedDisplaySets = cachedDisplaySets.filter(displaySet => {
|
||||
return displaySet.isDerived;
|
||||
});
|
||||
return computedDisplaySets;
|
||||
},
|
||||
exportTimeReportCSV: ({ segmentations, config, options, summaryStats }) => {
|
||||
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
|
||||
|
||||
const volumeId = dynamic4DDisplaySet?.displaySetInstanceUID;
|
||||
|
||||
// cache._volumeCache is a map that has a key that includes the volumeId
|
||||
// it is not exactly the volumeId, but it is the key that includes the volumeId
|
||||
// so we can't do cache._volumeCache.get(volumeId) we should iterate
|
||||
// over the keys and find the one that includes the volumeId
|
||||
let volumeCacheKey: string | undefined;
|
||||
|
||||
for (const [key] of cache._volumeCache) {
|
||||
if (key.includes(volumeId)) {
|
||||
volumeCacheKey = key;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
let dynamicVolume;
|
||||
if (volumeCacheKey) {
|
||||
dynamicVolume = cache.getVolume(volumeCacheKey);
|
||||
}
|
||||
|
||||
const instance = dynamic4DDisplaySet.instances[0];
|
||||
|
||||
const csv = [];
|
||||
|
||||
// CSV header information with placeholder empty values for the metadata lines
|
||||
csv.push(`Patient ID,${instance.PatientID},`);
|
||||
csv.push(`Study Date,${instance.StudyDate},`);
|
||||
csv.push(`StudyInstanceUID,${instance.StudyInstanceUID},`);
|
||||
csv.push(`StudyDescription,${instance.StudyDescription},`);
|
||||
csv.push(`SeriesInstanceUID,${instance.SeriesInstanceUID},`);
|
||||
|
||||
// empty line
|
||||
csv.push('');
|
||||
csv.push('');
|
||||
|
||||
// Helper function to calculate standard deviation
|
||||
function calculateStandardDeviation(data) {
|
||||
const n = data.length;
|
||||
const mean = data.reduce((acc, value) => acc + value, 0) / n;
|
||||
const squaredDifferences = data.map(value => (value - mean) ** 2);
|
||||
const variance = squaredDifferences.reduce((acc, value) => acc + value, 0) / n;
|
||||
const stdDeviation = Math.sqrt(variance);
|
||||
return stdDeviation;
|
||||
}
|
||||
|
||||
// Iterate through each segmentation to get the timeData and ijkCoords
|
||||
segmentations.forEach((segmentation, segmentationIndex) => {
|
||||
const [timeData, ijkCoords] = utilities.dynamicVolume.getDataInTime(dynamicVolume, {
|
||||
maskVolumeId: segmentation.id,
|
||||
}) as number[][];
|
||||
|
||||
if (summaryStats) {
|
||||
// Adding column headers for pixel identifier and segmentation label ids
|
||||
let headers = 'Operation,Segmentation Label ID';
|
||||
const maxLength = dynamicVolume.numTimePoints;
|
||||
for (let t = 0; t < maxLength; t++) {
|
||||
headers += `,Time Point ${t}`;
|
||||
}
|
||||
csv.push(headers);
|
||||
// // perform summary statistics on the timeData including for each time point, mean, median, min, max, and standard deviation for
|
||||
// // all the voxels in the ROI
|
||||
const mean = [];
|
||||
const min = [];
|
||||
const minIJK = [];
|
||||
const max = [];
|
||||
const maxIJK = [];
|
||||
const std = [];
|
||||
|
||||
const numVoxels = timeData.length;
|
||||
// Helper function to calculate standard deviation
|
||||
for (let timeIndex = 0; timeIndex < maxLength; timeIndex++) {
|
||||
// for each voxel in the ROI, get the value at the current time point
|
||||
const voxelValues = [];
|
||||
for (let voxelIndex = 0; voxelIndex < numVoxels; voxelIndex++) {
|
||||
voxelValues.push(timeData[voxelIndex][timeIndex]);
|
||||
}
|
||||
|
||||
mean.push(voxelValues.reduce((acc, value) => acc + value, 0) / numVoxels);
|
||||
const minimum = Math.min(...voxelValues);
|
||||
min.push(minimum);
|
||||
minIJK.push(ijkCoords[voxelValues.indexOf(minimum)]);
|
||||
const maximum = Math.max(...voxelValues);
|
||||
max.push(maximum);
|
||||
maxIJK.push(ijkCoords[voxelValues.indexOf(maximum)]);
|
||||
std.push(calculateStandardDeviation(voxelValues));
|
||||
}
|
||||
|
||||
let row = `Mean,${segmentation.label}`;
|
||||
// Generate separate rows for each statistic
|
||||
for (let t = 0; t < maxLength; t++) {
|
||||
row += `,${mean[t]}`;
|
||||
}
|
||||
|
||||
csv.push(row);
|
||||
|
||||
row = `Standard Deviation,${segmentation.label}`;
|
||||
for (let t = 0; t < maxLength; t++) {
|
||||
row += `,${std[t]}`;
|
||||
}
|
||||
|
||||
csv.push(row);
|
||||
|
||||
row = `Min,${segmentation.label}`;
|
||||
for (let t = 0; t < maxLength; t++) {
|
||||
row += `,${min[t]}`;
|
||||
}
|
||||
|
||||
csv.push(row);
|
||||
|
||||
row = `Max,${segmentation.label}`;
|
||||
for (let t = 0; t < maxLength; t++) {
|
||||
row += `,${max[t]}`;
|
||||
}
|
||||
|
||||
csv.push(row);
|
||||
} else {
|
||||
// Adding column headers for pixel identifier and segmentation label ids
|
||||
let headers = 'Pixel Identifier (IJK),Segmentation Label ID';
|
||||
const maxLength = dynamicVolume.numTimePoints;
|
||||
for (let t = 0; t < maxLength; t++) {
|
||||
headers += `,Time Point ${t}`;
|
||||
}
|
||||
csv.push(headers);
|
||||
// Assuming timeData and ijkCoords are of the same length
|
||||
for (let i = 0; i < timeData.length; i++) {
|
||||
// Generate the pixel identifier
|
||||
const pixelIdentifier = `${ijkCoords[i][0]}_${ijkCoords[i][1]}_${ijkCoords[i][2]}`;
|
||||
|
||||
// Start a new row for the current pixel
|
||||
let row = `${pixelIdentifier},${segmentation.label}`;
|
||||
|
||||
// Add time data points for this pixel
|
||||
for (let t = 0; t < timeData[i].length; t++) {
|
||||
row += `,${timeData[i][t]}`;
|
||||
}
|
||||
|
||||
// Append the row to the CSV array
|
||||
csv.push(row);
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
// Convert to CSV string
|
||||
const csvContent = csv.join('\n');
|
||||
|
||||
// Generate filename and trigger download
|
||||
const filename = `${instance.PatientID}.csv`;
|
||||
const blob = new Blob([csvContent], { type: 'text/csv;charset=utf-8;' });
|
||||
const link = document.createElement('a');
|
||||
const url = URL.createObjectURL(blob);
|
||||
link.setAttribute('href', url);
|
||||
link.setAttribute('download', filename);
|
||||
link.style.visibility = 'hidden';
|
||||
document.body.appendChild(link);
|
||||
link.click();
|
||||
document.body.removeChild(link);
|
||||
},
|
||||
swapDynamicWithComputedDisplaySet: ({ displaySet }) => {
|
||||
const computedDisplaySet = displaySet;
|
||||
|
||||
const displaySetCache = displaySetService.getDisplaySetCache();
|
||||
const cachedDisplaySetKeys = [displaySetCache.keys()];
|
||||
const { displaySetInstanceUID } = computedDisplaySet;
|
||||
// Check to see if computed display set is already in cache
|
||||
if (!cachedDisplaySetKeys.includes(displaySetInstanceUID)) {
|
||||
displaySetCache.set(displaySetInstanceUID, computedDisplaySet);
|
||||
}
|
||||
|
||||
// Get all viewports and their corresponding indices
|
||||
const { viewports } = viewportGridService.getState();
|
||||
|
||||
// get the viewports in the grid
|
||||
// iterate over them and find the ones that are showing a dynamic
|
||||
// volume (displaySet), and replace that exact displaySet with the
|
||||
// computed displaySet
|
||||
|
||||
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
|
||||
|
||||
const viewportsToUpdate = [];
|
||||
|
||||
for (const [key, value] of viewports) {
|
||||
const viewport = value;
|
||||
const viewportOptions = viewport.viewportOptions;
|
||||
const { displaySetInstanceUIDs } = viewport;
|
||||
const displaySetInstanceUIDIndex = displaySetInstanceUIDs.indexOf(
|
||||
dynamic4DDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
if (displaySetInstanceUIDIndex !== -1) {
|
||||
const newViewport = {
|
||||
viewportId: viewport.viewportId,
|
||||
// merge the other displaySetInstanceUIDs with the new one
|
||||
displaySetInstanceUIDs: [
|
||||
...displaySetInstanceUIDs.slice(0, displaySetInstanceUIDIndex),
|
||||
displaySetInstanceUID,
|
||||
...displaySetInstanceUIDs.slice(displaySetInstanceUIDIndex + 1),
|
||||
],
|
||||
viewportOptions: {
|
||||
initialImageOptions: viewportOptions.initialImageOptions,
|
||||
viewportType: 'volume',
|
||||
orientation: viewportOptions.orientation,
|
||||
background: viewportOptions.background,
|
||||
},
|
||||
};
|
||||
viewportsToUpdate.push(newViewport);
|
||||
}
|
||||
}
|
||||
|
||||
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
|
||||
},
|
||||
swapComputedWithDynamicDisplaySet: () => {
|
||||
// Todo: this assumes there is only one dynamic display set in the viewer
|
||||
const dynamicDisplaySet = actions.getDynamic4DDisplaySet();
|
||||
|
||||
const displaySetCache = displaySetService.getDisplaySetCache();
|
||||
const cachedDisplaySetKeys = [...displaySetCache.keys()]; // Fix: Spread to get the array
|
||||
const { displaySetInstanceUID } = dynamicDisplaySet;
|
||||
|
||||
// Check to see if dynamic display set is already in cache
|
||||
if (!cachedDisplaySetKeys.includes(displaySetInstanceUID)) {
|
||||
displaySetCache.set(displaySetInstanceUID, dynamicDisplaySet);
|
||||
}
|
||||
|
||||
// Get all viewports and their corresponding indices
|
||||
const { viewports } = viewportGridService.getState();
|
||||
|
||||
// Get the computed 4D display set
|
||||
const computed4DDisplaySet = actions.getComputedDisplaySets()[0];
|
||||
|
||||
const viewportsToUpdate = [];
|
||||
|
||||
for (const [key, value] of viewports) {
|
||||
const viewport = value;
|
||||
const viewportOptions = viewport.viewportOptions;
|
||||
const { displaySetInstanceUIDs } = viewport;
|
||||
const displaySetInstanceUIDIndex = displaySetInstanceUIDs.indexOf(
|
||||
computed4DDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
if (displaySetInstanceUIDIndex !== -1) {
|
||||
const newViewport = {
|
||||
viewportId: viewport.viewportId,
|
||||
// merge the other displaySetInstanceUIDs with the new one
|
||||
displaySetInstanceUIDs: [
|
||||
...displaySetInstanceUIDs.slice(0, displaySetInstanceUIDIndex),
|
||||
displaySetInstanceUID,
|
||||
...displaySetInstanceUIDs.slice(displaySetInstanceUIDIndex + 1),
|
||||
],
|
||||
viewportOptions: {
|
||||
initialImageOptions: viewportOptions.initialImageOptions,
|
||||
viewportType: 'volume',
|
||||
orientation: viewportOptions.orientation,
|
||||
background: viewportOptions.background,
|
||||
},
|
||||
};
|
||||
viewportsToUpdate.push(newViewport);
|
||||
}
|
||||
}
|
||||
|
||||
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
|
||||
},
|
||||
createNewLabelMapForDynamicVolume: async ({ label }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
|
||||
// get the dynamic 4D display set
|
||||
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
|
||||
const dynamic4DDisplaySetInstanceUID = dynamic4DDisplaySet.displaySetInstanceUID;
|
||||
|
||||
// check if the dynamic 4D display set is in the display, if not we might have
|
||||
// the computed volumes and we should choose them for the segmentation
|
||||
// creation
|
||||
|
||||
let referenceDisplaySet;
|
||||
|
||||
const activeViewport = viewports.get(activeViewportId);
|
||||
const activeDisplaySetInstanceUIDs = activeViewport.displaySetInstanceUIDs;
|
||||
const dynamicIsInActiveViewport = activeDisplaySetInstanceUIDs.includes(
|
||||
dynamic4DDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
if (dynamicIsInActiveViewport) {
|
||||
referenceDisplaySet = dynamic4DDisplaySet;
|
||||
}
|
||||
|
||||
if (!referenceDisplaySet) {
|
||||
// try to see if there is any derived displaySet in the active viewport
|
||||
// which is referencing the dynamic 4D display set
|
||||
|
||||
// Todo: this is wrong but I don't have time to fix it now
|
||||
const cachedDisplaySets = displaySetService.getDisplaySetCache();
|
||||
for (const [key, displaySet] of cachedDisplaySets) {
|
||||
if (displaySet.referenceDisplaySetUID === dynamic4DDisplaySetInstanceUID) {
|
||||
referenceDisplaySet = displaySet;
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (!referenceDisplaySet) {
|
||||
throw new Error('No reference display set found based on the dynamic data');
|
||||
}
|
||||
|
||||
const segmentationId = await segmentationService.createSegmentationForDisplaySet(
|
||||
referenceDisplaySet.displaySetInstanceUID,
|
||||
{ label }
|
||||
);
|
||||
|
||||
// Add Segmentation to all toolGroupIds in the viewer
|
||||
const toolGroupIds = Array.from(
|
||||
viewports.values(),
|
||||
viewport => viewport.viewportOptions.toolGroupId
|
||||
);
|
||||
|
||||
const representationType = LABELMAP;
|
||||
|
||||
for (const toolGroupId of toolGroupIds) {
|
||||
const hydrateSegmentation = true;
|
||||
await segmentationService.addSegmentationRepresentationToToolGroup(
|
||||
toolGroupId,
|
||||
segmentationId,
|
||||
hydrateSegmentation,
|
||||
representationType
|
||||
);
|
||||
|
||||
segmentationService.setActiveSegmentationForToolGroup(segmentationId, toolGroupId);
|
||||
}
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
updateSegmentationsChartDisplaySet: {
|
||||
commandFn: actions.updateSegmentationsChartDisplaySet,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
exportTimeReportCSV: {
|
||||
commandFn: actions.exportTimeReportCSV,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
swapDynamicWithComputedDisplaySet: {
|
||||
commandFn: actions.swapDynamicWithComputedDisplaySet,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
createNewLabelMapForDynamicVolume: {
|
||||
commandFn: actions.createNewLabelMapForDynamicVolume,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
swapComputedWithDynamicDisplaySet: {
|
||||
commandFn: actions.swapComputedWithDynamicDisplaySet,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
actions,
|
||||
definitions,
|
||||
defaultContext: 'DYNAMIC-VOLUME:CORNERSTONE',
|
||||
};
|
||||
};
|
||||
|
||||
export default commandsModule;
|
||||
@@ -0,0 +1,654 @@
|
||||
const DEFAULT_COLORMAP = '2hot';
|
||||
const toolGroupIds = {
|
||||
pt: 'dynamic4D-pt',
|
||||
fusion: 'dynamic4D-fusion',
|
||||
ct: 'dynamic4D-ct',
|
||||
};
|
||||
|
||||
function getPTOptions({
|
||||
colormap,
|
||||
voiInverted,
|
||||
}: {
|
||||
colormap?: {
|
||||
name: string;
|
||||
opacity:
|
||||
| number
|
||||
| {
|
||||
value: number;
|
||||
opacity: number;
|
||||
}[];
|
||||
};
|
||||
voiInverted?: boolean;
|
||||
} = {}) {
|
||||
return {
|
||||
blendMode: 'MIP',
|
||||
colormap,
|
||||
voi: {
|
||||
windowWidth: 5,
|
||||
windowCenter: 2.5,
|
||||
},
|
||||
voiInverted,
|
||||
};
|
||||
}
|
||||
|
||||
function getPTViewports() {
|
||||
const ptOptionsParams = {
|
||||
colormap: {
|
||||
name: DEFAULT_COLORMAP,
|
||||
opacity: [
|
||||
{ value: 0, opacity: 0 },
|
||||
{ value: 0.1, opacity: 1 },
|
||||
{ value: 1, opacity: 1 },
|
||||
],
|
||||
},
|
||||
voiInverted: false,
|
||||
};
|
||||
|
||||
return [
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'ptAxial',
|
||||
viewportType: 'volume',
|
||||
orientation: 'axial',
|
||||
toolGroupId: toolGroupIds.pt,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'axialSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ptDisplaySet',
|
||||
options: { ...getPTOptions(ptOptionsParams) },
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'ptSagittal',
|
||||
viewportType: 'volume',
|
||||
orientation: 'sagittal',
|
||||
toolGroupId: toolGroupIds.pt,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'sagittalSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ptDisplaySet',
|
||||
options: { ...getPTOptions(ptOptionsParams) },
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'ptCoronal',
|
||||
viewportType: 'volume',
|
||||
orientation: 'coronal',
|
||||
toolGroupId: toolGroupIds.pt,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'coronalSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ptDisplaySet',
|
||||
options: { ...getPTOptions(ptOptionsParams) },
|
||||
},
|
||||
],
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
function getFusionViewports() {
|
||||
const ptOptionsParams = {
|
||||
colormap: {
|
||||
name: DEFAULT_COLORMAP,
|
||||
opacity: [
|
||||
{ value: 0, opacity: 0 },
|
||||
{ value: 0.1, opacity: 0.3 },
|
||||
{ value: 1, opacity: 0.3 },
|
||||
],
|
||||
},
|
||||
};
|
||||
|
||||
return [
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'fusionAxial',
|
||||
viewportType: 'volume',
|
||||
orientation: 'axial',
|
||||
toolGroupId: toolGroupIds.fusion,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'axialSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ctWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'fusionWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
options: {
|
||||
syncInvertState: false,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ctDisplaySet',
|
||||
},
|
||||
{
|
||||
options: { ...getPTOptions(ptOptionsParams) },
|
||||
id: 'ptDisplaySet',
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'fusionSagittal',
|
||||
viewportType: 'volume',
|
||||
orientation: 'sagittal',
|
||||
toolGroupId: toolGroupIds.fusion,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'sagittalSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ctWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'fusionWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
options: {
|
||||
syncInvertState: false,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ctDisplaySet',
|
||||
},
|
||||
{
|
||||
options: { ...getPTOptions(ptOptionsParams) },
|
||||
id: 'ptDisplaySet',
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'fusionCoronal',
|
||||
viewportType: 'volume',
|
||||
orientation: 'coronal',
|
||||
toolGroupId: toolGroupIds.fusion,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'coronalSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ctWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'fusionWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ptFusionWLSync',
|
||||
source: false,
|
||||
target: true,
|
||||
options: {
|
||||
syncInvertState: false,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ctDisplaySet',
|
||||
},
|
||||
{
|
||||
options: { ...getPTOptions(ptOptionsParams) },
|
||||
id: 'ptDisplaySet',
|
||||
},
|
||||
],
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
function getSeriesChartViewport() {
|
||||
return {
|
||||
viewportOptions: {
|
||||
viewportId: 'seriesChart',
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'chartDisplaySet',
|
||||
options: {
|
||||
// This dataset does not require the download of any instance since it is pre-computed locally,
|
||||
// but interleaveTopToBottom.ts was not loading any series because it consider that all viewports
|
||||
// are a Cornerstone viewport which is not true in this case and it waits for all viewports to
|
||||
// have called interleaveTopToBottom(...).
|
||||
skipLoading: true,
|
||||
},
|
||||
},
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
function getCTViewports() {
|
||||
return [
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'ctAxial',
|
||||
viewportType: 'volume',
|
||||
orientation: 'axial',
|
||||
toolGroupId: toolGroupIds.ct,
|
||||
initialImageOptions: {
|
||||
preset: 'middle', // 'first', 'last', 'middle'
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'axialSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ctWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ctDisplaySet',
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'ctSagittal',
|
||||
viewportType: 'volume',
|
||||
orientation: 'sagittal',
|
||||
toolGroupId: toolGroupIds.ct,
|
||||
initialImageOptions: {
|
||||
preset: 'middle',
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'sagittalSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ctWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ctDisplaySet',
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
viewportOptions: {
|
||||
viewportId: 'ctCoronal',
|
||||
viewportType: 'volume',
|
||||
orientation: 'coronal',
|
||||
toolGroupId: toolGroupIds.ct,
|
||||
initialImageOptions: {
|
||||
preset: 'middle',
|
||||
},
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'cameraPosition',
|
||||
id: 'coronalSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
{
|
||||
type: 'voi',
|
||||
id: 'ctWLSync',
|
||||
source: true,
|
||||
target: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'ctDisplaySet',
|
||||
},
|
||||
],
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
const defaultProtocol = {
|
||||
id: 'default4D',
|
||||
locked: true,
|
||||
// Don't store this hanging protocol as it applies to the currently active
|
||||
// display set by default
|
||||
// cacheId: null,
|
||||
hasUpdatedPriorsInformation: false,
|
||||
name: 'Default',
|
||||
createdDate: '2023-01-01T00:00:00.000Z',
|
||||
modifiedDate: '2023-01-01T00:00:00.000Z',
|
||||
availableTo: {},
|
||||
editableBy: {},
|
||||
imageLoadStrategy: 'default', // "default" , "interleaveTopToBottom", "interleaveCenter"
|
||||
protocolMatchingRules: [
|
||||
{
|
||||
attribute: 'ModalitiesInStudy',
|
||||
constraint: {
|
||||
contains: ['CT', 'PT'],
|
||||
},
|
||||
},
|
||||
],
|
||||
// -1 would be used to indicate active only, whereas other values are
|
||||
// the number of required priors referenced - so 0 means active with
|
||||
// 0 or more priors.
|
||||
numberOfPriorsReferenced: -1,
|
||||
displaySetSelectors: {
|
||||
defaultDisplaySetId: {
|
||||
// Unused currently
|
||||
imageMatchingRules: [],
|
||||
// Matches displaysets, NOT series
|
||||
seriesMatchingRules: [
|
||||
// Try to match series with images by default, to prevent weird display
|
||||
// on SEG/SR containing studies
|
||||
{
|
||||
attribute: 'numImageFrames',
|
||||
constraint: {
|
||||
greaterThan: { value: 0 },
|
||||
},
|
||||
},
|
||||
],
|
||||
// Can be used to select matching studies
|
||||
// studyMatchingRules: [],
|
||||
},
|
||||
ctDisplaySet: {
|
||||
// Unused currently
|
||||
imageMatchingRules: [],
|
||||
// Matches displaysets, NOT series
|
||||
seriesMatchingRules: [
|
||||
{
|
||||
attribute: 'Modality',
|
||||
constraint: {
|
||||
equals: {
|
||||
value: 'CT',
|
||||
},
|
||||
},
|
||||
required: true,
|
||||
},
|
||||
{
|
||||
attribute: 'isReconstructable',
|
||||
constraint: {
|
||||
equals: {
|
||||
value: true,
|
||||
},
|
||||
},
|
||||
required: true,
|
||||
},
|
||||
],
|
||||
// Can be used to select matching studies
|
||||
// studyMatchingRules: [],
|
||||
},
|
||||
ptDisplaySet: {
|
||||
// Unused currently
|
||||
imageMatchingRules: [],
|
||||
// Matches displaysets, NOT series
|
||||
seriesMatchingRules: [
|
||||
{
|
||||
attribute: 'Modality',
|
||||
constraint: {
|
||||
equals: 'PT',
|
||||
},
|
||||
required: true,
|
||||
},
|
||||
{
|
||||
attribute: 'isReconstructable',
|
||||
constraint: {
|
||||
equals: {
|
||||
value: true,
|
||||
},
|
||||
},
|
||||
required: true,
|
||||
},
|
||||
{
|
||||
attribute: 'SeriesDescription',
|
||||
constraint: {
|
||||
contains: 'Corrected',
|
||||
},
|
||||
},
|
||||
{
|
||||
weight: 2,
|
||||
attribute: 'SeriesDescription',
|
||||
constraint: {
|
||||
doesNotContain: {
|
||||
value: 'Uncorrected',
|
||||
},
|
||||
},
|
||||
},
|
||||
|
||||
// Should we check if CorrectedImage contains ATTN?
|
||||
// (0028,0051) (CorrectedImage): NORM\DTIM\ATTN\SCAT\RADL\DECY
|
||||
],
|
||||
// Can be used to select matching studies
|
||||
// studyMatchingRules: [],
|
||||
},
|
||||
chartDisplaySet: {
|
||||
// Unused currently
|
||||
imageMatchingRules: [],
|
||||
// Matches displaysets, NOT series
|
||||
seriesMatchingRules: [
|
||||
{
|
||||
attribute: 'Modality',
|
||||
constraint: {
|
||||
equals: {
|
||||
value: 'CHT',
|
||||
},
|
||||
},
|
||||
required: true,
|
||||
},
|
||||
],
|
||||
},
|
||||
},
|
||||
stages: [
|
||||
{
|
||||
id: 'dataPreparation',
|
||||
name: 'Data Preparation',
|
||||
viewportStructure: {
|
||||
layoutType: 'grid',
|
||||
properties: {
|
||||
rows: 1,
|
||||
columns: 3,
|
||||
},
|
||||
},
|
||||
viewports: [...getPTViewports()],
|
||||
createdDate: '2023-01-01T00:00:00.000Z',
|
||||
},
|
||||
|
||||
{
|
||||
id: 'registration',
|
||||
name: 'Registration',
|
||||
viewportStructure: {
|
||||
layoutType: 'grid',
|
||||
properties: {
|
||||
rows: 3,
|
||||
columns: 3,
|
||||
},
|
||||
},
|
||||
viewports: [...getFusionViewports(), ...getCTViewports(), ...getPTViewports()],
|
||||
createdDate: '2023-01-01T00:00:00.000Z',
|
||||
},
|
||||
|
||||
{
|
||||
id: 'roiQuantification',
|
||||
name: 'ROI Quantification',
|
||||
viewportStructure: {
|
||||
layoutType: 'grid',
|
||||
properties: {
|
||||
rows: 1,
|
||||
columns: 3,
|
||||
},
|
||||
},
|
||||
viewports: [...getFusionViewports()],
|
||||
createdDate: '2023-01-01T00:00:00.000Z',
|
||||
},
|
||||
|
||||
{
|
||||
id: 'kineticAnalysis',
|
||||
name: 'Kinetic Analysis',
|
||||
viewportStructure: {
|
||||
layoutType: 'grid',
|
||||
properties: {
|
||||
rows: 2,
|
||||
columns: 3,
|
||||
layoutOptions: [
|
||||
{
|
||||
x: 0,
|
||||
y: 0,
|
||||
width: 1 / 3,
|
||||
height: 1 / 2,
|
||||
},
|
||||
{
|
||||
x: 1 / 3,
|
||||
y: 0,
|
||||
width: 1 / 3,
|
||||
height: 1 / 2,
|
||||
},
|
||||
{
|
||||
x: 2 / 3,
|
||||
y: 0,
|
||||
width: 1 / 3,
|
||||
height: 1 / 2,
|
||||
},
|
||||
{
|
||||
x: 0,
|
||||
y: 1 / 2,
|
||||
width: 1,
|
||||
height: 1 / 2,
|
||||
},
|
||||
],
|
||||
},
|
||||
},
|
||||
viewports: [...getFusionViewports(), getSeriesChartViewport()],
|
||||
createdDate: '2023-01-01T00:00:00.000Z',
|
||||
},
|
||||
],
|
||||
};
|
||||
|
||||
/**
|
||||
* HangingProtocolModule should provide a list of hanging protocols that will be
|
||||
* available in OHIF for Modes to use to decide on the structure of the viewports
|
||||
* and also the series that hung in the viewports. Each hanging protocol is defined by
|
||||
* { name, protocols}. Examples include the default hanging protocol provided by
|
||||
* the default extension that shows 2x2 viewports.
|
||||
*/
|
||||
|
||||
function getHangingProtocolModule() {
|
||||
return [
|
||||
{
|
||||
name: defaultProtocol.id,
|
||||
protocol: defaultProtocol,
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
export default getHangingProtocolModule;
|
||||
@@ -0,0 +1,68 @@
|
||||
import React from 'react';
|
||||
import { DynamicDataPanel } from './panels';
|
||||
import { Toolbox } from '@ohif/ui';
|
||||
import DynamicExport from './panels/DynamicExport';
|
||||
|
||||
function getPanelModule({ commandsManager, extensionManager, servicesManager }) {
|
||||
const wrappedDynamicDataPanel = () => {
|
||||
return (
|
||||
<DynamicDataPanel
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
const wrappedDynamicToolbox = () => {
|
||||
return (
|
||||
<>
|
||||
<Toolbox
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
buttonSectionId="dynamic-toolbox"
|
||||
title="Threshold Tools"
|
||||
/>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
const wrappedDynamicExport = () => {
|
||||
return (
|
||||
<>
|
||||
<DynamicExport
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
/>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
return [
|
||||
{
|
||||
name: 'dynamic-volume',
|
||||
iconName: 'tab-4d',
|
||||
iconLabel: '4D Workflow',
|
||||
label: '4D Workflow',
|
||||
component: wrappedDynamicDataPanel,
|
||||
},
|
||||
{
|
||||
name: 'dynamic-toolbox',
|
||||
iconName: 'tab-4d',
|
||||
iconLabel: '4D Workflow',
|
||||
label: 'Dynamic Toolbox',
|
||||
component: wrappedDynamicToolbox,
|
||||
},
|
||||
{
|
||||
name: 'dynamic-export',
|
||||
iconName: 'tab-4d',
|
||||
iconLabel: '4D Workflow',
|
||||
label: '4D Workflow',
|
||||
component: wrappedDynamicExport,
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
export default getPanelModule;
|
||||
@@ -0,0 +1,6 @@
|
||||
import packageJson from '../package.json';
|
||||
|
||||
const id = packageJson.name;
|
||||
const SOPClassHandlerName = 'dynamic-volume';
|
||||
|
||||
export { id, SOPClassHandlerName };
|
||||
@@ -0,0 +1,57 @@
|
||||
import { id } from './id';
|
||||
import commandsModule from './commandsModule';
|
||||
import getPanelModule from './getPanelModule';
|
||||
import getHangingProtocolModule from './getHangingProtocolModule';
|
||||
import { cache } from '@cornerstonejs/core';
|
||||
|
||||
/**
|
||||
* You can remove any of the following modules if you don't need them.
|
||||
*/
|
||||
const dynamicVolumeExtension = {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
* You ID can be anything you want, but it should be unique.
|
||||
*/
|
||||
id,
|
||||
|
||||
/**
|
||||
* Perform any pre-registration tasks here. This is called before the extension
|
||||
* is registered. Usually we run tasks such as: configuring the libraries
|
||||
* (e.g. cornerstone, cornerstoneTools, ...) or registering any services that
|
||||
* this extension is providing.
|
||||
*/
|
||||
preRegistration: ({ servicesManager, commandsManager, configuration = {} }) => {
|
||||
// TODO: look for the right fix
|
||||
cache.setMaxCacheSize(5 * 1024 * 1024 * 1024);
|
||||
},
|
||||
/**
|
||||
* PanelModule should provide a list of panels that will be available in OHIF
|
||||
* for Modes to consume and render. Each panel is defined by a {name,
|
||||
* iconName, iconLabel, label, component} object. Example of a panel module
|
||||
* is the StudyBrowserPanel that is provided by the default extension in OHIF.
|
||||
*/
|
||||
getPanelModule,
|
||||
/**
|
||||
* ViewportModule should provide a list of viewports that will be available in OHIF
|
||||
* for Modes to consume and use in the viewports. Each viewport is defined by
|
||||
* {name, component} object. Example of a viewport module is the CornerstoneViewport
|
||||
* that is provided by the Cornerstone extension in OHIF.
|
||||
*/
|
||||
getHangingProtocolModule,
|
||||
/**
|
||||
* CommandsModule should provide a list of commands that will be available in OHIF
|
||||
* for Modes to consume and use in the viewports. Each command is defined by
|
||||
* an object of { actions, definitions, defaultContext } where actions is an
|
||||
* object of functions, definitions is an object of available commands, their
|
||||
* options, and defaultContext is the default context for the command to run against.
|
||||
*/
|
||||
getCommandsModule: ({ servicesManager, commandsManager, extensionManager }) => {
|
||||
return commandsModule({
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
extensionManager,
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
export { dynamicVolumeExtension as default };
|
||||
@@ -0,0 +1,18 @@
|
||||
import React from 'react';
|
||||
import PanelGenerateImage from './PanelGenerateImage';
|
||||
|
||||
function DynamicDataPanel({ servicesManager, commandsManager }) {
|
||||
return (
|
||||
<div
|
||||
className="flex flex-col text-white"
|
||||
data-cy={'dynamic-volume-panel'}
|
||||
>
|
||||
<PanelGenerateImage
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
></PanelGenerateImage>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default DynamicDataPanel;
|
||||
@@ -0,0 +1,76 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import { ActionButtons } from '@ohif/ui';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
function DynamicExport({ commandsManager, servicesManager, extensionManager }: withAppTypes) {
|
||||
const { segmentationService } = servicesManager.services;
|
||||
const { t } = useTranslation('dynamicExport');
|
||||
|
||||
const [segmentations, setSegmentations] = useState(() => segmentationService.getSegmentations());
|
||||
|
||||
const actions = [
|
||||
{
|
||||
label: 'Export Time Data',
|
||||
onClick: () => {
|
||||
commandsManager.runCommand('exportTimeReportCSV', {
|
||||
segmentations,
|
||||
options: {
|
||||
filename: 'TimeData.csv',
|
||||
},
|
||||
});
|
||||
},
|
||||
disabled: !segmentations?.length,
|
||||
},
|
||||
{
|
||||
label: 'Export ROI Stats',
|
||||
onClick: () => {
|
||||
commandsManager.runCommand('exportTimeReportCSV', {
|
||||
segmentations,
|
||||
summaryStats: true,
|
||||
options: {
|
||||
filename: 'ROIStats.csv',
|
||||
},
|
||||
});
|
||||
},
|
||||
disabled: !segmentations?.length,
|
||||
},
|
||||
];
|
||||
|
||||
/**
|
||||
* Update UI based on segmentation changes (added, removed, updated)
|
||||
*/
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const added = segmentationService.EVENTS.SEGMENTATION_ADDED;
|
||||
const updated = segmentationService.EVENTS.SEGMENTATION_UPDATED;
|
||||
const removed = segmentationService.EVENTS.SEGMENTATION_REMOVED;
|
||||
const subscriptions = [];
|
||||
|
||||
[added, updated, removed].forEach(evt => {
|
||||
const { unsubscribe } = segmentationService.subscribe(evt, () => {
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
setSegmentations(segmentations);
|
||||
});
|
||||
subscriptions.push(unsubscribe);
|
||||
});
|
||||
|
||||
return () => {
|
||||
subscriptions.forEach(unsub => {
|
||||
unsub();
|
||||
});
|
||||
};
|
||||
}, []);
|
||||
|
||||
return (
|
||||
<div>
|
||||
<div className="mt-3 flex justify-center px-2">
|
||||
<ActionButtons
|
||||
actions={actions}
|
||||
t={t}
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default DynamicExport;
|
||||
@@ -0,0 +1,241 @@
|
||||
import React, { useEffect, useState } from 'react';
|
||||
import {
|
||||
InputDoubleRange,
|
||||
Button,
|
||||
PanelSection,
|
||||
ButtonGroup,
|
||||
IconButton,
|
||||
InputNumber,
|
||||
Icon,
|
||||
Tooltip,
|
||||
} from '@ohif/ui';
|
||||
|
||||
import { Enums } from '@cornerstonejs/core';
|
||||
|
||||
const controlClassNames = {
|
||||
sizeClassName: 'w-[58px] h-[28px]',
|
||||
arrowsDirection: 'horizontal',
|
||||
labelPosition: 'bottom',
|
||||
};
|
||||
|
||||
const Header = ({ title, tooltip }) => (
|
||||
<div className="flex items-center space-x-1">
|
||||
<Tooltip
|
||||
content={<div className="text-white">{tooltip}</div>}
|
||||
position="bottom-left"
|
||||
tight={true}
|
||||
tooltipBoxClassName="max-w-xs p-2"
|
||||
>
|
||||
<Icon
|
||||
name="info-link"
|
||||
className="text-primary-active h-[14px] w-[14px]"
|
||||
/>
|
||||
</Tooltip>
|
||||
<span className="text-aqua-pale text-[11px] uppercase">{title}</span>
|
||||
</div>
|
||||
);
|
||||
|
||||
const DynamicVolumeControls = ({
|
||||
isPlaying,
|
||||
onPlayPauseChange,
|
||||
// fps
|
||||
fps,
|
||||
onFpsChange,
|
||||
minFps,
|
||||
maxFps,
|
||||
// Frames
|
||||
currentFrameIndex,
|
||||
onFrameChange,
|
||||
framesLength,
|
||||
onGenerate,
|
||||
onDoubleRangeChange,
|
||||
onDynamicClick,
|
||||
}) => {
|
||||
const [computedView, setComputedView] = useState(false);
|
||||
|
||||
const [computeViewMode, setComputeViewMode] = useState(Enums.DynamicOperatorType.SUM);
|
||||
|
||||
const [sliderRangeValues, setSliderRangeValues] = useState([framesLength / 4, framesLength / 2]);
|
||||
|
||||
useEffect(() => {
|
||||
setSliderRangeValues([framesLength / 4, framesLength / 2]);
|
||||
}, [framesLength]);
|
||||
|
||||
const handleSliderChange = newValues => {
|
||||
onDoubleRangeChange(newValues);
|
||||
|
||||
if (newValues[0] === sliderRangeValues[0] && newValues[1] === sliderRangeValues[1]) {
|
||||
return;
|
||||
}
|
||||
setSliderRangeValues(newValues);
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="flex select-none flex-col">
|
||||
<PanelSection
|
||||
title="Controls"
|
||||
childrenClassName="space-y-4 pb-5 px-5"
|
||||
>
|
||||
<div className="mt-2">
|
||||
<Header
|
||||
title="View"
|
||||
tooltip={
|
||||
'Select the view mode, 4D to view the dynamic volume or Computed to view the computed volume'
|
||||
}
|
||||
/>
|
||||
<ButtonGroup className="mt-2 w-full">
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => {
|
||||
setComputedView(false);
|
||||
onDynamicClick?.();
|
||||
}}
|
||||
>
|
||||
4D
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => {
|
||||
setComputedView(true);
|
||||
}}
|
||||
>
|
||||
Computed
|
||||
</button>
|
||||
</ButtonGroup>
|
||||
</div>
|
||||
<div>
|
||||
<FrameControls
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
isPlaying={isPlaying}
|
||||
computedView={computedView}
|
||||
// fps
|
||||
fps={fps}
|
||||
onFpsChange={onFpsChange}
|
||||
minFps={minFps}
|
||||
maxFps={maxFps}
|
||||
//
|
||||
framesLength={framesLength}
|
||||
onFrameChange={onFrameChange}
|
||||
currentFrameIndex={currentFrameIndex}
|
||||
/>
|
||||
</div>
|
||||
<div className={`mt-6 flex flex-col ${computedView ? '' : 'ohif-disabled'}`}>
|
||||
<Header
|
||||
title="Computed Operation"
|
||||
tooltip={
|
||||
<div>
|
||||
Operation Buttons (SUM, AVERAGE, SUBTRACT): Select the mathematical operation to be
|
||||
applied to the data set.
|
||||
<br></br> Range Slider: Choose the numeric range within which the operation will be
|
||||
performed.
|
||||
<br></br>Generate Button: Execute the chosen operation on the specified range of
|
||||
data.{' '}
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<ButtonGroup
|
||||
className={`mt-2 w-full `}
|
||||
separated={true}
|
||||
>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUM)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.SUM.toString().toUpperCase()}
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.AVERAGE)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.AVERAGE.toString().toUpperCase()}
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.SUBTRACT.toString().toUpperCase()}
|
||||
</button>
|
||||
</ButtonGroup>
|
||||
<div className="w-ful mt-2">
|
||||
<InputDoubleRange
|
||||
values={sliderRangeValues}
|
||||
onChange={handleSliderChange}
|
||||
minValue={0}
|
||||
showLabel={true}
|
||||
allowNumberEdit={true}
|
||||
maxValue={framesLength}
|
||||
step={1}
|
||||
/>
|
||||
</div>
|
||||
<Button
|
||||
className="mt-2 !h-[26px] !w-[115px] self-start !p-0"
|
||||
onClick={() => {
|
||||
onGenerate(computeViewMode);
|
||||
}}
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
</div>
|
||||
</PanelSection>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
export default DynamicVolumeControls;
|
||||
|
||||
function FrameControls({
|
||||
isPlaying,
|
||||
onPlayPauseChange,
|
||||
fps,
|
||||
minFps,
|
||||
maxFps,
|
||||
onFpsChange,
|
||||
framesLength,
|
||||
onFrameChange,
|
||||
currentFrameIndex,
|
||||
computedView,
|
||||
}) {
|
||||
const getPlayPauseIconName = () => (isPlaying ? 'icon-pause' : 'icon-play');
|
||||
|
||||
return (
|
||||
<div className={computedView && 'ohif-disabled'}>
|
||||
<Header
|
||||
title="4D Controls"
|
||||
tooltip={
|
||||
<div>
|
||||
Play/Pause Button: Begin or pause the animation of the 4D visualization. <br></br> Frame
|
||||
Selector: Navigate through individual frames of the 4D data. <br></br> FPS (Frames Per
|
||||
Second) Selector: Adjust the playback speed of the animation.
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<div className="mt-3 flex justify-between">
|
||||
<IconButton
|
||||
className="bg-customblue-30 h-[26px] w-[58px] rounded-[4px]"
|
||||
onClick={() => onPlayPauseChange(!isPlaying)}
|
||||
>
|
||||
<Icon
|
||||
name={getPlayPauseIconName()}
|
||||
className=" active:text-primary-light hover:bg-customblue-300 h-[24px] w-[24px] cursor-pointer text-white"
|
||||
/>
|
||||
</IconButton>
|
||||
<InputNumber
|
||||
value={currentFrameIndex}
|
||||
onChange={onFrameChange}
|
||||
minValue={0}
|
||||
maxValue={framesLength}
|
||||
label="Frame"
|
||||
{...controlClassNames}
|
||||
/>
|
||||
<InputNumber
|
||||
value={fps}
|
||||
onChange={onFpsChange}
|
||||
minValue={minFps}
|
||||
maxValue={maxFps}
|
||||
{...controlClassNames}
|
||||
label="FPS"
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
@@ -0,0 +1,71 @@
|
||||
import React from 'react';
|
||||
import { InputDoubleRange } from '@ohif/ui';
|
||||
import { Select } from '@ohif/ui';
|
||||
import { Button } from '@ohif/ui';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
const GenerateVolume = ({
|
||||
rangeValues,
|
||||
handleSliderChange,
|
||||
operationsUI,
|
||||
options,
|
||||
handleGenerateOptionsChange,
|
||||
onGenerateImage,
|
||||
returnTo4D,
|
||||
displayingComputedVolume,
|
||||
}) => {
|
||||
return (
|
||||
<>
|
||||
<div>
|
||||
<div className="mb-2 text-white">Computed Image</div>
|
||||
<Select
|
||||
closeMenuOnSelect={true}
|
||||
className="border-primary-main mr-2 bg-black text-white "
|
||||
options={operationsUI}
|
||||
placeholder={operationsUI.find(option => option.value === options.Operation).placeHolder}
|
||||
value={options.Operation}
|
||||
onChange={({ value }) => {
|
||||
handleGenerateOptionsChange({
|
||||
Operation: value,
|
||||
});
|
||||
}}
|
||||
/>
|
||||
<InputDoubleRange
|
||||
values={rangeValues}
|
||||
onChange={handleSliderChange}
|
||||
minValue={rangeValues[0] || 1}
|
||||
maxValue={rangeValues[1] || 2}
|
||||
showLabel={true}
|
||||
step={1}
|
||||
/>
|
||||
<div className="flex space-x-2">
|
||||
<Button
|
||||
onClick={onGenerateImage}
|
||||
className="w-1/2"
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
<Button
|
||||
onClick={returnTo4D}
|
||||
disabled={!displayingComputedVolume}
|
||||
className="w-1/2"
|
||||
>
|
||||
Return To 4D
|
||||
</Button>
|
||||
</div>
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
GenerateVolume.propTypes = {
|
||||
rangeValues: PropTypes.array.isRequired,
|
||||
handleSliderChange: PropTypes.func.isRequired,
|
||||
operationsUI: PropTypes.array.isRequired,
|
||||
options: PropTypes.object.isRequired,
|
||||
handleGenerateOptionsChange: PropTypes.func.isRequired,
|
||||
onGenerateImage: PropTypes.func.isRequired,
|
||||
returnTo4D: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
export default GenerateVolume;
|
||||
@@ -0,0 +1,275 @@
|
||||
import React, { useEffect, useState, useRef } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useCine, useViewportGrid } from '@ohif/ui';
|
||||
import { cache, utilities as csUtils, volumeLoader, eventTarget } from '@cornerstonejs/core';
|
||||
import { Enums } from '@cornerstonejs/streaming-image-volume-loader';
|
||||
import { utilities as cstUtils } from '@cornerstonejs/tools';
|
||||
import DynamicVolumeControls from './DynamicVolumeControls';
|
||||
|
||||
const SOPClassHandlerId = '@ohif/extension-default.sopClassHandlerModule.stack';
|
||||
|
||||
export default function PanelGenerateImage({ servicesManager, commandsManager }: withAppTypes) {
|
||||
const { cornerstoneViewportService, viewportGridService, displaySetService } =
|
||||
servicesManager.services;
|
||||
|
||||
const [{ isCineEnabled }, cineService] = useCine();
|
||||
const [{ activeViewportId }] = useViewportGrid();
|
||||
|
||||
//
|
||||
const [timePointsRange, setTimePointsRange] = useState([]);
|
||||
const [timePointsRangeToUseForGenerate, setTimePointsRangeToUseForGenerate] = useState([]);
|
||||
const [computedDisplaySet, setComputedDisplaySet] = useState(null);
|
||||
const [dynamicVolume, setDynamicVolume] = useState(null);
|
||||
const [frameRate, setFrameRate] = useState(20);
|
||||
const [isPlaying, setIsPlaying] = useState(isCineEnabled);
|
||||
const [timePointRendered, setTimePointRendered] = useState(null);
|
||||
const [displayingComputed, setDisplayingComputed] = useState(false);
|
||||
|
||||
//
|
||||
const uuidComputedVolume = useRef(csUtils.uuidv4());
|
||||
const uuidDynamicVolume = useRef(null);
|
||||
const computedVolumeId = `cornerstoneStreamingImageVolume:${uuidComputedVolume.current}`;
|
||||
|
||||
useEffect(() => {
|
||||
const evt = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
|
||||
|
||||
const { unsubscribe } = cornerstoneViewportService.subscribe(evt, evtDetails => {
|
||||
evtDetails.viewportData.data.forEach(volumeData => {
|
||||
if (volumeData.volume.isDynamicVolume()) {
|
||||
setDynamicVolume(volumeData.volume);
|
||||
uuidDynamicVolume.current = volumeData.displaySetInstanceUID;
|
||||
setTimePointsRange([1, volumeData.volume.numTimePoints]);
|
||||
}
|
||||
});
|
||||
});
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [cornerstoneViewportService]);
|
||||
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = servicesManager.services.cineService.subscribe(
|
||||
servicesManager.services.cineService.EVENTS.CINE_STATE_CHANGED,
|
||||
evt => {
|
||||
setIsPlaying(evt.isPlaying);
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [cineService]);
|
||||
|
||||
useEffect(() => {
|
||||
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(activeViewportId);
|
||||
|
||||
if (!displaySetUIDs || displaySetUIDs.length === 0) {
|
||||
return;
|
||||
}
|
||||
|
||||
const displaySets = displaySetUIDs.map(displaySetUID =>
|
||||
displaySetService.getDisplaySetByUID(displaySetUID)
|
||||
);
|
||||
|
||||
const dynamicVolumeDisplaySet = displaySets.find(displaySet => displaySet.isDynamicVolume);
|
||||
|
||||
if (!dynamicVolumeDisplaySet) {
|
||||
return;
|
||||
}
|
||||
|
||||
const dynamicVolume = cache
|
||||
.getVolumes()
|
||||
.find(volume => volume.volumeId.includes(dynamicVolumeDisplaySet.displaySetInstanceUID));
|
||||
|
||||
if (!dynamicVolume) {
|
||||
return;
|
||||
}
|
||||
|
||||
setDynamicVolume(dynamicVolume);
|
||||
uuidDynamicVolume.current = dynamicVolumeDisplaySet.displaySetInstanceUID;
|
||||
setTimePointsRange([1, dynamicVolume.numTimePoints]);
|
||||
}, [activeViewportId, cornerstoneViewportService]);
|
||||
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const evt = Enums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED;
|
||||
|
||||
const callback = evt => {
|
||||
setTimePointRendered(evt.detail.timePointIndex);
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(evt, callback);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(evt, callback);
|
||||
};
|
||||
}, [cornerstoneViewportService]);
|
||||
|
||||
function renderGeneratedImage(displaySet) {
|
||||
commandsManager.runCommand('swapDynamicWithComputedDisplaySet', {
|
||||
displaySet,
|
||||
});
|
||||
|
||||
setDisplayingComputed(true);
|
||||
}
|
||||
|
||||
function renderDynamicImage(displaySet) {
|
||||
commandsManager.runCommand('swapComputedWithDynamicDisplaySet');
|
||||
}
|
||||
|
||||
// Get computed volume from cache, calculate the data across the time frames,
|
||||
// set the scalar data to the computedVolume, and create displaySet
|
||||
async function onGenerateImage(operationName) {
|
||||
const dynamicVolumeId = dynamicVolume.volumeId;
|
||||
|
||||
if (!dynamicVolumeId) {
|
||||
return;
|
||||
}
|
||||
|
||||
let computedVolume = cache.getVolume(computedVolumeId);
|
||||
|
||||
if (!computedVolume) {
|
||||
await createComputedVolume(dynamicVolumeId, computedVolumeId);
|
||||
computedVolume = cache.getVolume(computedVolumeId);
|
||||
}
|
||||
|
||||
const vals = timePointsRangeToUseForGenerate;
|
||||
|
||||
const targets = Array.from({ length: vals[1] - vals[0] + 1 }, (_, i) => i + vals[0]);
|
||||
|
||||
const dataInTime = cstUtils.dynamicVolume.generateImageFromTimeData(
|
||||
dynamicVolume,
|
||||
operationName,
|
||||
operationName === 'SUBTRACT' ? vals : targets
|
||||
);
|
||||
|
||||
// Add loadStatus.loaded to computed volume and set to true
|
||||
computedVolume.loadStatus = {};
|
||||
computedVolume.loadStatus.loaded = true;
|
||||
// Set computed scalar data to volume
|
||||
const scalarData = computedVolume.getScalarData();
|
||||
scalarData.set(dataInTime);
|
||||
|
||||
// If computed display set does not exist, create an object to be used as
|
||||
// the displaySet. If it does exist, update the image data and vtkTexture
|
||||
if (!computedDisplaySet) {
|
||||
const displaySet = {
|
||||
volumeLoaderSchema: computedVolume.volumeId.split(':')[0],
|
||||
displaySetInstanceUID: uuidComputedVolume.current,
|
||||
SOPClassHandlerId: SOPClassHandlerId,
|
||||
Modality: dynamicVolume.metadata.Modality,
|
||||
isMultiFrame: false,
|
||||
numImageFrames: 1,
|
||||
uid: uuidComputedVolume.current,
|
||||
referenceDisplaySetUID: dynamicVolume.volumeId.split(':')[1],
|
||||
madeInClient: true,
|
||||
FrameOfReferenceUID: dynamicVolume.metadata.FrameOfReferenceUID,
|
||||
isDerived: true,
|
||||
};
|
||||
setComputedDisplaySet(displaySet);
|
||||
renderGeneratedImage(displaySet);
|
||||
} else {
|
||||
commandsManager.runCommand('updateVolumeData', {
|
||||
volume: computedVolume,
|
||||
});
|
||||
// Check if viewport is currently displaying the computed volume, if so,
|
||||
// call render on the viewports to update the image, if not, call
|
||||
// renderGeneratedImage
|
||||
// if (!cache.getVolume(dynamicVolumeId)) {
|
||||
// for (const viewportId of viewports.keys()) {
|
||||
// const viewportForRendering =
|
||||
// cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
// viewportForRendering.render();
|
||||
// }
|
||||
// } else {
|
||||
cornerstoneViewportService.getRenderingEngine().render();
|
||||
renderGeneratedImage(computedDisplaySet);
|
||||
// }
|
||||
}
|
||||
}
|
||||
|
||||
const onPlayPauseChange = isPlaying => {
|
||||
isPlaying ? handlePlay() : handleStop();
|
||||
};
|
||||
|
||||
const handlePlay = () => {
|
||||
setIsPlaying(true);
|
||||
const viewportInfo = cornerstoneViewportService.getViewportInfo(activeViewportId);
|
||||
|
||||
if (!viewportInfo) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { element } = viewportInfo;
|
||||
cineService.playClip(element, { framesPerSecond: frameRate, viewportId: activeViewportId });
|
||||
};
|
||||
|
||||
const handleStop = () => {
|
||||
setIsPlaying(false);
|
||||
const { element } = cornerstoneViewportService.getViewportInfo(activeViewportId);
|
||||
cineService.stopClip(element);
|
||||
};
|
||||
|
||||
const handleSetFrameRate = newFrameRate => {
|
||||
setFrameRate(newFrameRate);
|
||||
handleStop();
|
||||
handlePlay();
|
||||
};
|
||||
|
||||
function handleSliderChange(newValues) {
|
||||
if (
|
||||
newValues[0] === timePointsRangeToUseForGenerate[0] &&
|
||||
newValues[1] === timePointsRangeToUseForGenerate[1]
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
setTimePointsRangeToUseForGenerate(newValues);
|
||||
}
|
||||
|
||||
if (!dynamicVolume || timePointsRange.length === 0) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<DynamicVolumeControls
|
||||
fps={frameRate}
|
||||
isPlaying={isPlaying}
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
minFps={1}
|
||||
maxFps={50}
|
||||
currentFrameIndex={timePointRendered}
|
||||
onFpsChange={handleSetFrameRate}
|
||||
framesLength={timePointsRange[1]}
|
||||
onFrameChange={timePointIndex => {
|
||||
dynamicVolume.timePointIndex = timePointIndex;
|
||||
}}
|
||||
onGenerate={onGenerateImage}
|
||||
onDynamicClick={displayingComputed ? () => renderDynamicImage(computedDisplaySet) : null}
|
||||
onDoubleRangeChange={handleSliderChange}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
async function createComputedVolume(dynamicVolumeId, computedVolumeId) {
|
||||
if (!cache.getVolume(computedVolumeId)) {
|
||||
const computedVolume = await volumeLoader.createAndCacheDerivedVolume(dynamicVolumeId, {
|
||||
volumeId: computedVolumeId,
|
||||
});
|
||||
return computedVolume;
|
||||
}
|
||||
}
|
||||
|
||||
PanelGenerateImage.propTypes = {
|
||||
servicesManager: PropTypes.shape({
|
||||
services: PropTypes.shape({
|
||||
measurementService: PropTypes.shape({
|
||||
getMeasurements: PropTypes.func.isRequired,
|
||||
subscribe: PropTypes.func.isRequired,
|
||||
EVENTS: PropTypes.object.isRequired,
|
||||
VALUE_TYPES: PropTypes.object.isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
};
|
||||
@@ -0,0 +1,27 @@
|
||||
import React, { useMemo } from 'react';
|
||||
|
||||
function WorkflowPanel({ servicesManager, extensionManager }) {
|
||||
const ProgressDropdownWithService = useMemo(() => {
|
||||
const defaultComponents = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-default.customizationModule.default'
|
||||
).value;
|
||||
|
||||
return defaultComponents.find(
|
||||
component => component.id === 'progressDropdownWithServiceComponent'
|
||||
).component;
|
||||
}, [extensionManager]);
|
||||
|
||||
return (
|
||||
<div
|
||||
data-cy={'workflow-panel'}
|
||||
className="bg-secondary-dark mb-1 px-3 py-4"
|
||||
>
|
||||
<div className="mb-1">Workflow</div>
|
||||
<div>
|
||||
<ProgressDropdownWithService servicesManager={servicesManager} />
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default WorkflowPanel;
|
||||
@@ -0,0 +1,5 @@
|
||||
import DynamicDataPanel from './DynamicDataPanel';
|
||||
import WorkflowPanel from './WorkflowPanel';
|
||||
import PanelGenerateImage from './PanelGenerateImage';
|
||||
|
||||
export { DynamicDataPanel, WorkflowPanel, PanelGenerateImage };
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "3.7.0-beta.73",
|
||||
"version": "3.8.2",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -25,6 +25,8 @@
|
||||
"access": "public"
|
||||
},
|
||||
"scripts": {
|
||||
"clean": "shx rm -rf dist",
|
||||
"clean:deep": "yarn run clean && shx rm -rf node_modules",
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
|
||||
"dev:cornerstone": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --progress --config .webpack/webpack.prod.js",
|
||||
@@ -36,10 +38,11 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.2",
|
||||
"@cornerstonejs/dicom-image-loader": "^1.13.2",
|
||||
"@ohif/core": "3.7.0-beta.73",
|
||||
"@ohif/ui": "3.7.0-beta.73",
|
||||
"dcmjs": "^0.29.6",
|
||||
"@cornerstonejs/dicom-image-loader": "^1.77.6",
|
||||
"@icr/polyseg-wasm": "^0.4.0",
|
||||
"@ohif/core": "3.8.2\n",
|
||||
"@ohif/ui": "3.8.2\n",
|
||||
"dcmjs": "^0.29.12",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
@@ -52,11 +55,12 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.13.2",
|
||||
"@cornerstonejs/core": "^1.13.2",
|
||||
"@cornerstonejs/streaming-image-volume-loader": "^1.13.2",
|
||||
"@cornerstonejs/tools": "^1.13.2",
|
||||
"@kitware/vtk.js": "27.3.1",
|
||||
"@cornerstonejs/adapters": "^1.77.6",
|
||||
"@cornerstonejs/core": "^1.77.6",
|
||||
"@cornerstonejs/streaming-image-volume-loader": "^1.77.6",
|
||||
"@cornerstonejs/tools": "^1.77.6",
|
||||
"@icr/polyseg-wasm": "^0.4.0",
|
||||
"@kitware/vtk.js": "30.4.1",
|
||||
"html2canvas": "^1.4.1",
|
||||
"lodash.debounce": "4.0.8",
|
||||
"lodash.merge": "^4.6.2",
|
||||
|
||||
@@ -10,7 +10,7 @@ import {
|
||||
utilities as csUtils,
|
||||
} from '@cornerstonejs/core';
|
||||
import { MeasurementService } from '@ohif/core';
|
||||
import { Notification, useViewportDialog } from '@ohif/ui';
|
||||
import { Notification, useViewportDialog, AllInOneMenu } from '@ohif/ui';
|
||||
import { IStackViewport, IVolumeViewport } from '@cornerstonejs/core/dist/esm/types';
|
||||
|
||||
import { setEnabledElement } from '../state';
|
||||
@@ -18,10 +18,15 @@ import { setEnabledElement } from '../state';
|
||||
import './OHIFCornerstoneViewport.css';
|
||||
import CornerstoneOverlays from './Overlays/CornerstoneOverlays';
|
||||
import getSOPInstanceAttributes from '../utils/measurementServiceMappings/utils/getSOPInstanceAttributes';
|
||||
import CornerstoneServices from '../types/CornerstoneServices';
|
||||
import CinePlayer from '../components/CinePlayer';
|
||||
import { Types } from '@ohif/core';
|
||||
|
||||
import OHIFViewportActionCorners from '../components/OHIFViewportActionCorners';
|
||||
import { getWindowLevelActionMenu } from '../components/WindowLevelActionMenu/getWindowLevelActionMenu';
|
||||
import { useAppConfig } from '@state';
|
||||
|
||||
import { LutPresentation, PositionPresentation } from '../types/Presentation';
|
||||
|
||||
const STACK = 'stack';
|
||||
|
||||
/**
|
||||
@@ -94,27 +99,49 @@ function areEqual(prevProps, nextProps) {
|
||||
|
||||
// Todo: This should be done with expose of internal API similar to react-vtkjs-viewport
|
||||
// Then we don't need to worry about the re-renders if the props change.
|
||||
const OHIFCornerstoneViewport = React.memo(props => {
|
||||
const OHIFCornerstoneViewport = React.memo((props: withAppTypes) => {
|
||||
const {
|
||||
displaySets,
|
||||
dataSource,
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
onElementEnabled,
|
||||
// eslint-disable-next-line react/prop-types
|
||||
onElementDisabled,
|
||||
isJumpToMeasurementDisabled,
|
||||
// Note: you SHOULD NOT use the initialImageIdOrIndex for manipulation
|
||||
// of the imageData in the OHIFCornerstoneViewport. This prop is used
|
||||
// to set the initial state of the viewport's first image to render
|
||||
// eslint-disable-next-line react/prop-types
|
||||
initialImageIndex,
|
||||
// if the viewport is part of a hanging protocol layout
|
||||
// we should not really rely on the old synchronizers and
|
||||
// you see below we only rehydrate the synchronizers if the viewport
|
||||
// is not part of the hanging protocol layout. HPs should
|
||||
// define their own synchronizers. Since the synchronizers are
|
||||
// viewportId dependent and
|
||||
// eslint-disable-next-line react/prop-types
|
||||
isHangingProtocolLayout,
|
||||
} = props;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
if (!viewportId) {
|
||||
throw new Error('Viewport ID is required');
|
||||
}
|
||||
|
||||
// Since we only have support for dynamic data in volume viewports, we should
|
||||
// handle this case here and set the viewportType to volume if any of the
|
||||
// displaySets are dynamic volumes
|
||||
viewportOptions.viewportType = displaySets.some(ds => ds.isDynamicVolume && ds.isReconstructable)
|
||||
? 'volume'
|
||||
: viewportOptions.viewportType;
|
||||
|
||||
const [scrollbarHeight, setScrollbarHeight] = useState('100px');
|
||||
const [enabledVPElement, setEnabledVPElement] = useState(null);
|
||||
const elementRef = useRef();
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
const {
|
||||
measurementService,
|
||||
@@ -126,12 +153,13 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
cornerstoneCacheService,
|
||||
viewportGridService,
|
||||
stateSyncService,
|
||||
} = servicesManager.services as CornerstoneServices;
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const [viewportDialogState] = useViewportDialog();
|
||||
// useCallback for scroll bar height calculation
|
||||
const setImageScrollBarHeight = useCallback(() => {
|
||||
const scrollbarHeight = `${elementRef.current.clientHeight - 20}px`;
|
||||
const scrollbarHeight = `${elementRef.current.clientHeight - 40}px`;
|
||||
setScrollbarHeight(scrollbarHeight);
|
||||
}, [elementRef]);
|
||||
|
||||
@@ -151,6 +179,8 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
toolGroupService.removeViewportFromToolGroup(viewportId, renderingEngineId);
|
||||
|
||||
syncGroupService.removeViewportFromSyncGroup(viewportId, renderingEngineId, syncGroups);
|
||||
|
||||
viewportActionCornersService.clear(viewportId);
|
||||
},
|
||||
[viewportId]
|
||||
);
|
||||
@@ -175,6 +205,13 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
|
||||
syncGroupService.addViewportToSyncGroup(viewportId, renderingEngineId, syncGroups);
|
||||
|
||||
const synchronizersStore = stateSyncService.getState().synchronizersStore;
|
||||
|
||||
if (synchronizersStore?.[viewportId]?.length && !isHangingProtocolLayout) {
|
||||
// If the viewport used to have a synchronizer, re apply it again
|
||||
_rehydrateSynchronizers(synchronizersStore, viewportId, syncGroupService);
|
||||
}
|
||||
|
||||
if (onElementEnabled) {
|
||||
onElementEnabled(evt);
|
||||
}
|
||||
@@ -197,13 +234,18 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
return;
|
||||
}
|
||||
|
||||
cleanUpServices(viewportInfo);
|
||||
cornerstoneViewportService.storePresentation({ viewportId });
|
||||
|
||||
// This should be done after the store presentation since synchronizers
|
||||
// will get cleaned up and they need the viewportInfo to be present
|
||||
cleanUpServices(viewportInfo);
|
||||
|
||||
if (onElementDisabled) {
|
||||
onElementDisabled(viewportInfo);
|
||||
}
|
||||
|
||||
cornerstoneViewportService.disableElement(viewportId);
|
||||
|
||||
eventTarget.removeEventListener(Enums.Events.ELEMENT_ENABLED, elementEnabledHandler);
|
||||
};
|
||||
}, []);
|
||||
@@ -265,7 +307,10 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
// The presentation state will have been stored previously by closing
|
||||
// a viewport. Otherwise, this viewport will be unchanged and the
|
||||
// presentation information will be directly carried over.
|
||||
const { lutPresentationStore, positionPresentationStore } = stateSyncService.getState();
|
||||
const state = stateSyncService.getState();
|
||||
const lutPresentationStore = state.lutPresentationStore as LutPresentation;
|
||||
const positionPresentationStore = state.positionPresentationStore as PositionPresentation;
|
||||
|
||||
const { presentationIds } = viewportOptions;
|
||||
const presentations = {
|
||||
positionPresentation: positionPresentationStore[presentationIds?.positionPresentationId],
|
||||
@@ -344,12 +389,38 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
};
|
||||
}, [displaySets, elementRef, viewportId]);
|
||||
|
||||
// Set up the window level action menu in the viewport action corners.
|
||||
useEffect(() => {
|
||||
// Doing an === check here because the default config value when not set is true
|
||||
if (appConfig.addWindowLevelActionMenu === false) {
|
||||
return;
|
||||
}
|
||||
|
||||
// TODO: In the future we should consider using the customization service
|
||||
// to determine if and in which corner various action components should go.
|
||||
const wlActionMenu = getWindowLevelActionMenu({
|
||||
viewportId,
|
||||
element: elementRef.current,
|
||||
displaySets,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
verticalDirection: AllInOneMenu.VerticalDirection.TopToBottom,
|
||||
horizontalDirection: AllInOneMenu.HorizontalDirection.RightToLeft,
|
||||
});
|
||||
|
||||
viewportActionCornersService.setComponent({
|
||||
viewportId,
|
||||
id: 'windowLevelActionMenu',
|
||||
component: wlActionMenu,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
indexPriority: -100,
|
||||
});
|
||||
}, [displaySets, viewportId, viewportActionCornersService, servicesManager, commandsManager]);
|
||||
|
||||
return (
|
||||
<React.Fragment>
|
||||
<div className="viewport-wrapper">
|
||||
<ReactResizeDetector
|
||||
refreshMode="debounce"
|
||||
refreshRate={50} // Wait 50 ms after last move to render
|
||||
onResize={onResize}
|
||||
targetRef={elementRef.current}
|
||||
/>
|
||||
@@ -373,7 +444,8 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
servicesManager={servicesManager}
|
||||
/>
|
||||
</div>
|
||||
<div className="absolute w-full">
|
||||
{/* top offset of 24px to account for ViewportActionCorners. */}
|
||||
<div className="absolute top-[24px] w-full">
|
||||
{viewportDialogState.viewportId === viewportId && (
|
||||
<Notification
|
||||
id="viewport-notification"
|
||||
@@ -382,9 +454,12 @@ const OHIFCornerstoneViewport = React.memo(props => {
|
||||
actions={viewportDialogState.actions}
|
||||
onSubmit={viewportDialogState.onSubmit}
|
||||
onOutsideClick={viewportDialogState.onOutsideClick}
|
||||
onKeyPress={viewportDialogState.onKeyPress}
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
{/* The OHIFViewportActionCorners follows the viewport in the DOM so that it is naturally at a higher z-index.*/}
|
||||
<OHIFViewportActionCorners viewportId={viewportId} />
|
||||
</React.Fragment>
|
||||
);
|
||||
}, areEqual);
|
||||
@@ -412,7 +487,10 @@ function _subscribeToJumpToMeasurementEvents(
|
||||
cornerstoneViewportService.getViewportIdToJump(
|
||||
jumpId,
|
||||
measurement.displaySetInstanceUID,
|
||||
{ referencedImageId: measurement.referencedImageId }
|
||||
{
|
||||
referencedImageId:
|
||||
measurement.referencedImageId || measurement.metadata?.referencedImageId,
|
||||
}
|
||||
);
|
||||
}
|
||||
if (cacheJumpToMeasurementEvent.cornerstoneViewport !== viewportId) {
|
||||
@@ -521,6 +599,9 @@ function _jumpToMeasurement(
|
||||
i => i.SOPInstanceUID === SOPInstanceUID
|
||||
);
|
||||
|
||||
// the index is reversed in the volume viewport
|
||||
// imageIdIndex = referencedDisplaySet.images.length - 1 - imageIdIndex;
|
||||
|
||||
const { viewPlaneNormal: viewportViewPlane } = viewport.getCamera();
|
||||
|
||||
// should compare abs for both planes since the direction can be flipped
|
||||
@@ -547,6 +628,58 @@ function _jumpToMeasurement(
|
||||
}
|
||||
}
|
||||
|
||||
function _rehydrateSynchronizers(
|
||||
synchronizersStore: { [key: string]: unknown },
|
||||
viewportId: string,
|
||||
syncGroupService: any
|
||||
) {
|
||||
synchronizersStore[viewportId].forEach(synchronizerObj => {
|
||||
if (!synchronizerObj.id) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { id, sourceViewports, targetViewports } = synchronizerObj;
|
||||
|
||||
const synchronizer = syncGroupService.getSynchronizer(id);
|
||||
|
||||
if (!synchronizer) {
|
||||
return;
|
||||
}
|
||||
|
||||
const sourceViewportInfo = sourceViewports.find(
|
||||
sourceViewport => sourceViewport.viewportId === viewportId
|
||||
);
|
||||
|
||||
const targetViewportInfo = targetViewports.find(
|
||||
targetViewport => targetViewport.viewportId === viewportId
|
||||
);
|
||||
|
||||
const isSourceViewportInSynchronizer = synchronizer
|
||||
.getSourceViewports()
|
||||
.find(sourceViewport => sourceViewport.viewportId === viewportId);
|
||||
|
||||
const isTargetViewportInSynchronizer = synchronizer
|
||||
.getTargetViewports()
|
||||
.find(targetViewport => targetViewport.viewportId === viewportId);
|
||||
|
||||
// if the viewport was previously a source viewport, add it again
|
||||
if (sourceViewportInfo && !isSourceViewportInSynchronizer) {
|
||||
synchronizer.addSource({
|
||||
viewportId: sourceViewportInfo.viewportId,
|
||||
renderingEngineId: sourceViewportInfo.renderingEngineId,
|
||||
});
|
||||
}
|
||||
|
||||
// if the viewport was previously a target viewport, add it again
|
||||
if (targetViewportInfo && !isTargetViewportInSynchronizer) {
|
||||
synchronizer.addTarget({
|
||||
viewportId: targetViewportInfo.viewportId,
|
||||
renderingEngineId: targetViewportInfo.renderingEngineId,
|
||||
});
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// Component displayName
|
||||
OHIFCornerstoneViewport.displayName = 'OHIFCornerstoneViewport';
|
||||
|
||||
|
||||
@@ -5,7 +5,7 @@ import CustomizableViewportOverlay from './CustomizableViewportOverlay';
|
||||
import ViewportOrientationMarkers from './ViewportOrientationMarkers';
|
||||
import ViewportImageSliceLoadingIndicator from './ViewportImageSliceLoadingIndicator';
|
||||
|
||||
function CornerstoneOverlays(props) {
|
||||
function CornerstoneOverlays(props: withAppTypes) {
|
||||
const { viewportId, element, scrollbarHeight, servicesManager } = props;
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
const [imageSliceData, setImageSliceData] = useState({
|
||||
|
||||
@@ -2,21 +2,24 @@ import React, { useCallback, useEffect, useMemo, useState } from 'react';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
import PropTypes from 'prop-types';
|
||||
import { metaData, Enums, utilities } from '@cornerstonejs/core';
|
||||
import { ViewportOverlay } from '@ohif/ui';
|
||||
import { formatPN, formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { InstanceMetadata } from 'platform/core/src/types';
|
||||
import { ServicesManager } from '@ohif/core';
|
||||
import { ImageSliceData } from '@cornerstonejs/core/dist/esm/types';
|
||||
import { ViewportOverlay } from '@ohif/ui';
|
||||
import { InstanceMetadata } from '@ohif/core/src/types';
|
||||
import { formatPN, formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
|
||||
|
||||
import './CustomizableViewportOverlay.css';
|
||||
|
||||
const EPSILON = 1e-4;
|
||||
|
||||
type ViewportData = StackViewportData | VolumeViewportData;
|
||||
|
||||
interface OverlayItemProps {
|
||||
element: any;
|
||||
viewportData: any;
|
||||
element: HTMLElement;
|
||||
viewportData: ViewportData;
|
||||
imageSliceData: ImageSliceData;
|
||||
servicesManager: ServicesManager;
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
viewportId: string;
|
||||
instance: InstanceMetadata;
|
||||
customization: any;
|
||||
formatters: {
|
||||
@@ -35,67 +38,11 @@ interface OverlayItemProps {
|
||||
scale?: number;
|
||||
}
|
||||
|
||||
/**
|
||||
* Window Level / Center Overlay item
|
||||
*/
|
||||
function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
const { windowWidth, windowCenter } = voi;
|
||||
if (typeof windowCenter !== 'number' || typeof windowWidth !== 'number') {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">W:</span>
|
||||
<span className="ml-1 mr-2 shrink-0 font-light">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-1 shrink-0">L:</span>
|
||||
<span className="ml-1 shrink-0 font-light">{windowCenter.toFixed(0)}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Zoom Level Overlay item
|
||||
*/
|
||||
function ZoomOverlayItem({ scale, customization }: OverlayItemProps) {
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">Zoom:</span>
|
||||
<span className="font-light">{scale.toFixed(2)}x</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Instance Number Overlay Item
|
||||
*/
|
||||
function InstanceNumberOverlayItem({
|
||||
instanceNumber,
|
||||
imageSliceData,
|
||||
customization,
|
||||
}: OverlayItemProps) {
|
||||
const { imageIndex, numberOfSlices } = imageSliceData;
|
||||
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">I:</span>
|
||||
<span className="font-light">
|
||||
{instanceNumber !== undefined && instanceNumber !== null
|
||||
? `${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`
|
||||
: `${imageIndex + 1}/${numberOfSlices}`}
|
||||
</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
const OverlayItemComponents = {
|
||||
'ohif.overlayItem.windowLevel': VOIOverlayItem,
|
||||
'ohif.overlayItem.zoomLevel': ZoomOverlayItem,
|
||||
'ohif.overlayItem.instanceNumber': InstanceNumberOverlayItem,
|
||||
};
|
||||
|
||||
/**
|
||||
* Customizable Viewport Overlay
|
||||
@@ -106,12 +53,17 @@ function CustomizableViewportOverlay({
|
||||
imageSliceData,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
}: {
|
||||
element: HTMLElement;
|
||||
viewportData: ViewportData;
|
||||
imageSliceData: ImageSliceData;
|
||||
viewportId: string;
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
}) {
|
||||
const { toolbarService, cornerstoneViewportService, customizationService } =
|
||||
const { cornerstoneViewportService, customizationService, toolGroupService } =
|
||||
servicesManager.services;
|
||||
const [voi, setVOI] = useState({ windowCenter: null, windowWidth: null });
|
||||
const [scale, setScale] = useState(1);
|
||||
const [activeTools, setActiveTools] = useState([]);
|
||||
const { imageIndex } = imageSliceData;
|
||||
|
||||
const topLeftCustomization = customizationService.getModeCustomization(
|
||||
@@ -127,27 +79,21 @@ function CustomizableViewportOverlay({
|
||||
'cornerstoneOverlayBottomRight'
|
||||
);
|
||||
|
||||
const instance = useMemo(() => {
|
||||
const instances = useMemo(() => {
|
||||
if (viewportData != null) {
|
||||
return _getViewportInstance(viewportData, imageIndex);
|
||||
return _getViewportInstances(viewportData);
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
}, [viewportData, imageIndex]);
|
||||
|
||||
const instanceNumber = useMemo(() => {
|
||||
if (viewportData != null) {
|
||||
return _getInstanceNumber(viewportData, viewportId, imageIndex, cornerstoneViewportService);
|
||||
}
|
||||
return null;
|
||||
}, [viewportData, viewportId, imageIndex, cornerstoneViewportService]);
|
||||
|
||||
/**
|
||||
* Initial toolbar state
|
||||
*/
|
||||
useEffect(() => {
|
||||
setActiveTools(toolbarService.getActiveTools());
|
||||
}, []);
|
||||
const instanceNumber = useMemo(
|
||||
() =>
|
||||
viewportData
|
||||
? getInstanceNumber(viewportData, viewportId, imageIndex, cornerstoneViewportService)
|
||||
: null,
|
||||
[viewportData, viewportId, imageIndex, cornerstoneViewportService]
|
||||
);
|
||||
|
||||
/**
|
||||
* Updating the VOI when the viewport changes its voi
|
||||
@@ -215,26 +161,9 @@ function CustomizableViewportOverlay({
|
||||
};
|
||||
}, [viewportId, viewportData, cornerstoneViewportService, element]);
|
||||
|
||||
/**
|
||||
* Updating the active tools when the toolbar changes
|
||||
*/
|
||||
// Todo: this should act on the toolGroups instead of the toolbar state
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = toolbarService.subscribe(
|
||||
toolbarService.EVENTS.TOOL_BAR_STATE_MODIFIED,
|
||||
() => {
|
||||
setActiveTools(toolbarService.getActiveTools());
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [toolbarService]);
|
||||
|
||||
const _renderOverlayItem = useCallback(
|
||||
item => {
|
||||
const overlayItemProps: OverlayItemProps = {
|
||||
const overlayItemProps = {
|
||||
element,
|
||||
viewportData,
|
||||
imageSliceData,
|
||||
@@ -242,24 +171,26 @@ function CustomizableViewportOverlay({
|
||||
servicesManager,
|
||||
customization: item,
|
||||
formatters: {
|
||||
formatPN: formatPN,
|
||||
formatPN,
|
||||
formatDate: formatDICOMDate,
|
||||
formatTime: formatDICOMTime,
|
||||
formatNumberPrecision: formatNumberPrecision,
|
||||
formatNumberPrecision,
|
||||
},
|
||||
instance,
|
||||
// calculated
|
||||
instance: instances ? instances[item?.instanceIndex] : null,
|
||||
voi,
|
||||
scale,
|
||||
instanceNumber,
|
||||
};
|
||||
|
||||
if (item.customizationType === 'ohif.overlayItem.windowLevel') {
|
||||
return <VOIOverlayItem {...overlayItemProps} />;
|
||||
} else if (item.customizationType === 'ohif.overlayItem.zoomLevel') {
|
||||
return <ZoomOverlayItem {...overlayItemProps} />;
|
||||
} else if (item.customizationType === 'ohif.overlayItem.instanceNumber') {
|
||||
return <InstanceNumberOverlayItem {...overlayItemProps} />;
|
||||
if (!item) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const { customizationType } = item;
|
||||
const OverlayItemComponent = OverlayItemComponents[customizationType];
|
||||
|
||||
if (OverlayItemComponent) {
|
||||
return <OverlayItemComponent {...overlayItemProps} />;
|
||||
} else {
|
||||
const renderItem = customizationService.transform(item);
|
||||
|
||||
@@ -275,113 +206,158 @@ function CustomizableViewportOverlay({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
customizationService,
|
||||
instance,
|
||||
instances,
|
||||
voi,
|
||||
scale,
|
||||
instanceNumber,
|
||||
]
|
||||
);
|
||||
|
||||
const getTopLeftContent = useCallback(() => {
|
||||
const items = topLeftCustomization?.items || [
|
||||
{
|
||||
id: 'WindowLevel',
|
||||
customizationType: 'ohif.overlayItem.windowLevel',
|
||||
},
|
||||
];
|
||||
return (
|
||||
<>
|
||||
{items.map((item, i) => (
|
||||
<div key={`topLeftOverlayItem_${i}`}>{_renderOverlayItem(item)}</div>
|
||||
))}
|
||||
</>
|
||||
);
|
||||
}, [topLeftCustomization, _renderOverlayItem]);
|
||||
const getContent = useCallback(
|
||||
(customization, defaultItems, keyPrefix) => {
|
||||
const items = customization?.items ?? defaultItems;
|
||||
return (
|
||||
<>
|
||||
{items.map((item, index) => (
|
||||
<div key={`${keyPrefix}_${index}`}>
|
||||
{item?.condition
|
||||
? item.condition({
|
||||
instance: instances ? instances[item?.instanceIndex] : null,
|
||||
formatters: { formatDate: formatDICOMDate },
|
||||
})
|
||||
? _renderOverlayItem(item)
|
||||
: null
|
||||
: _renderOverlayItem(item)}
|
||||
</div>
|
||||
))}
|
||||
</>
|
||||
);
|
||||
},
|
||||
[_renderOverlayItem]
|
||||
);
|
||||
|
||||
const getTopRightContent = useCallback(() => {
|
||||
const items = topRightCustomization?.items || [
|
||||
{
|
||||
id: 'InstanceNmber',
|
||||
customizationType: 'ohif.overlayItem.instanceNumber',
|
||||
},
|
||||
];
|
||||
return (
|
||||
<>
|
||||
{items.map((item, i) => (
|
||||
<div key={`topRightOverlayItem_${i}`}>{_renderOverlayItem(item)}</div>
|
||||
))}
|
||||
</>
|
||||
);
|
||||
}, [topRightCustomization, _renderOverlayItem]);
|
||||
const studyDateItem = {
|
||||
id: 'StudyDate',
|
||||
customizationType: 'ohif.overlayItem',
|
||||
label: '',
|
||||
title: 'Study date',
|
||||
condition: ({ instance }) => instance && instance.StudyDate,
|
||||
contentF: ({ instance, formatters: { formatDate } }) => formatDate(instance.StudyDate),
|
||||
};
|
||||
|
||||
const getBottomLeftContent = useCallback(() => {
|
||||
const items = bottomLeftCustomization?.items || [];
|
||||
return (
|
||||
<>
|
||||
{items.map((item, i) => (
|
||||
<div key={`bottomLeftOverlayItem_${i}`}>{_renderOverlayItem(item)}</div>
|
||||
))}
|
||||
</>
|
||||
);
|
||||
}, [bottomLeftCustomization, _renderOverlayItem]);
|
||||
const seriesDescriptionItem = {
|
||||
id: 'SeriesDescription',
|
||||
customizationType: 'ohif.overlayItem',
|
||||
label: '',
|
||||
title: 'Series description',
|
||||
attribute: 'SeriesDescription',
|
||||
condition: ({ instance }) => {
|
||||
return instance && instance.SeriesDescription;
|
||||
},
|
||||
};
|
||||
|
||||
const getBottomRightContent = useCallback(() => {
|
||||
const items = bottomRightCustomization?.items || [];
|
||||
return (
|
||||
<>
|
||||
{items.map((item, i) => (
|
||||
<div key={`bottomRightOverlayItem_${i}`}>{_renderOverlayItem(item)}</div>
|
||||
))}
|
||||
</>
|
||||
);
|
||||
}, [bottomRightCustomization, _renderOverlayItem]);
|
||||
const topLeftItems = instances
|
||||
? instances
|
||||
.map((instance, index) => {
|
||||
return [
|
||||
{
|
||||
...studyDateItem,
|
||||
instanceIndex: index,
|
||||
},
|
||||
{
|
||||
...seriesDescriptionItem,
|
||||
instanceIndex: index,
|
||||
},
|
||||
];
|
||||
})
|
||||
.flat()
|
||||
: [];
|
||||
|
||||
return (
|
||||
<ViewportOverlay
|
||||
topLeft={getTopLeftContent()}
|
||||
topRight={getTopRightContent()}
|
||||
bottomLeft={getBottomLeftContent()}
|
||||
bottomRight={getBottomRightContent()}
|
||||
topLeft={
|
||||
/**
|
||||
* Inline default overlay items for a more standard expansion
|
||||
*/
|
||||
getContent(topLeftCustomization, [...topLeftItems], 'topLeftOverlayItem')
|
||||
}
|
||||
topRight={getContent(topRightCustomization, [], 'topRightOverlayItem')}
|
||||
bottomLeft={getContent(
|
||||
bottomLeftCustomization,
|
||||
[
|
||||
{
|
||||
id: 'WindowLevel',
|
||||
customizationType: 'ohif.overlayItem.windowLevel',
|
||||
},
|
||||
{
|
||||
id: 'ZoomLevel',
|
||||
customizationType: 'ohif.overlayItem.zoomLevel',
|
||||
condition: () => {
|
||||
const activeToolName = toolGroupService.getActiveToolForViewport(viewportId);
|
||||
return activeToolName === 'Zoom';
|
||||
},
|
||||
},
|
||||
],
|
||||
'bottomLeftOverlayItem'
|
||||
)}
|
||||
bottomRight={getContent(
|
||||
bottomRightCustomization,
|
||||
[
|
||||
{
|
||||
id: 'InstanceNumber',
|
||||
customizationType: 'ohif.overlayItem.instanceNumber',
|
||||
},
|
||||
],
|
||||
'bottomRightOverlayItem'
|
||||
)}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
function _getViewportInstance(viewportData, imageIndex) {
|
||||
let imageId = null;
|
||||
function _getViewportInstances(viewportData) {
|
||||
const imageIds = [];
|
||||
if (viewportData.viewportType === Enums.ViewportType.STACK) {
|
||||
imageId = viewportData.data.imageIds[imageIndex];
|
||||
imageIds.push(viewportData.data[0].imageIds[0]);
|
||||
} else if (viewportData.viewportType === Enums.ViewportType.ORTHOGRAPHIC) {
|
||||
const volumes = viewportData.data;
|
||||
if (volumes && volumes.length == 1) {
|
||||
const volume = volumes[0];
|
||||
imageId = volume.imageIds[imageIndex];
|
||||
}
|
||||
volumes.forEach(volume => {
|
||||
if (!volume?.imageIds || volume.imageIds.length === 0) {
|
||||
return;
|
||||
}
|
||||
imageIds.push(volume.imageIds[0]);
|
||||
});
|
||||
}
|
||||
return imageId ? metaData.get('instance', imageId) || {} : {};
|
||||
const instances = [];
|
||||
|
||||
imageIds.forEach(imageId => {
|
||||
const instance = metaData.get('instance', imageId) || {};
|
||||
instances.push(instance);
|
||||
});
|
||||
return instances;
|
||||
}
|
||||
|
||||
function _getInstanceNumber(viewportData, viewportId, imageIndex, cornerstoneViewportService) {
|
||||
const getInstanceNumber = (viewportData, viewportId, imageIndex, cornerstoneViewportService) => {
|
||||
let instanceNumber;
|
||||
|
||||
if (viewportData.viewportType === Enums.ViewportType.STACK) {
|
||||
instanceNumber = _getInstanceNumberFromStack(viewportData, imageIndex);
|
||||
|
||||
if (!instanceNumber && instanceNumber !== 0) {
|
||||
return null;
|
||||
}
|
||||
} else if (viewportData.viewportType === Enums.ViewportType.ORTHOGRAPHIC) {
|
||||
instanceNumber = _getInstanceNumberFromVolume(
|
||||
viewportData,
|
||||
imageIndex,
|
||||
viewportId,
|
||||
cornerstoneViewportService
|
||||
);
|
||||
switch (viewportData.viewportType) {
|
||||
case Enums.ViewportType.STACK:
|
||||
instanceNumber = _getInstanceNumberFromStack(viewportData, imageIndex);
|
||||
break;
|
||||
case Enums.ViewportType.ORTHOGRAPHIC:
|
||||
instanceNumber = _getInstanceNumberFromVolume(
|
||||
viewportData,
|
||||
viewportId,
|
||||
cornerstoneViewportService,
|
||||
imageIndex
|
||||
);
|
||||
break;
|
||||
}
|
||||
return instanceNumber;
|
||||
}
|
||||
|
||||
return instanceNumber ?? null;
|
||||
};
|
||||
|
||||
function _getInstanceNumberFromStack(viewportData, imageIndex) {
|
||||
const imageIds = viewportData.data.imageIds;
|
||||
const imageIds = viewportData.data[0].imageIds;
|
||||
const imageId = imageIds[imageIndex];
|
||||
|
||||
if (!imageId) {
|
||||
@@ -403,15 +379,20 @@ function _getInstanceNumberFromStack(viewportData, imageIndex) {
|
||||
// Since volume viewports can be in any view direction, they can render
|
||||
// a reconstructed image which don't have imageIds; therefore, no instance and instanceNumber
|
||||
// Here we check if viewport is in the acquisition direction and if so, we get the instanceNumber
|
||||
function _getInstanceNumberFromVolume(viewportData, viewportId, cornerstoneViewportService) {
|
||||
const volumes = viewportData.volumes;
|
||||
function _getInstanceNumberFromVolume(
|
||||
viewportData,
|
||||
viewportId,
|
||||
cornerstoneViewportService,
|
||||
imageIndex
|
||||
) {
|
||||
const volumes = viewportData.data;
|
||||
|
||||
// Todo: support fusion of acquisition plane which has instanceNumber
|
||||
if (!volumes || volumes.length > 1) {
|
||||
if (!volumes) {
|
||||
return;
|
||||
}
|
||||
|
||||
const volume = volumes[0];
|
||||
// Todo: support fusion of acquisition plane which has instanceNumber
|
||||
const { volume } = volumes[0];
|
||||
const { direction, imageIds } = volume;
|
||||
|
||||
const cornerstoneViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
@@ -442,6 +423,72 @@ function _getInstanceNumberFromVolume(viewportData, viewportId, cornerstoneViewp
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Window Level / Center Overlay item
|
||||
*/
|
||||
function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
const { windowWidth, windowCenter } = voi;
|
||||
if (typeof windowCenter !== 'number' || typeof windowWidth !== 'number') {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">W:</span>
|
||||
<span className="ml-1 mr-2 shrink-0">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-1 shrink-0">L:</span>
|
||||
<span className="ml-1 shrink-0">{windowCenter.toFixed(0)}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Zoom Level Overlay item
|
||||
*/
|
||||
function ZoomOverlayItem({ scale, customization }: OverlayItemProps) {
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">Zoom:</span>
|
||||
<span>{scale.toFixed(2)}x</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Instance Number Overlay Item
|
||||
*/
|
||||
function InstanceNumberOverlayItem({
|
||||
instanceNumber,
|
||||
imageSliceData,
|
||||
customization,
|
||||
}: OverlayItemProps) {
|
||||
const { imageIndex, numberOfSlices } = imageSliceData;
|
||||
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span>
|
||||
{instanceNumber !== undefined && instanceNumber !== null ? (
|
||||
<>
|
||||
<span className="mr-1 shrink-0">I:</span>
|
||||
<span>{`${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`}</span>
|
||||
</>
|
||||
) : (
|
||||
`${imageIndex + 1}/${numberOfSlices}`
|
||||
)}
|
||||
</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
CustomizableViewportOverlay.propTypes = {
|
||||
viewportData: PropTypes.object,
|
||||
imageIndex: PropTypes.number,
|
||||
|
||||
@@ -3,7 +3,6 @@ import PropTypes from 'prop-types';
|
||||
import { Enums, Types, utilities } from '@cornerstonejs/core';
|
||||
import { utilities as csToolsUtils } from '@cornerstonejs/tools';
|
||||
import { ImageScrollbar } from '@ohif/ui';
|
||||
import { ServicesManger } from '@ohif/core';
|
||||
|
||||
function CornerstoneImageScrollbar({
|
||||
viewportData,
|
||||
@@ -13,8 +12,8 @@ function CornerstoneImageScrollbar({
|
||||
setImageSliceData,
|
||||
scrollbarHeight,
|
||||
servicesManager,
|
||||
}) {
|
||||
const { cineService, cornerstoneViewportService } = (servicesManager as ServicesManger).services;
|
||||
}: withAppTypes) {
|
||||
const { cineService, cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
const onImageScrollbarChange = (imageIndex, viewportId) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
@@ -23,7 +22,7 @@ function CornerstoneImageScrollbar({
|
||||
|
||||
if (isCineEnabled) {
|
||||
// on image scrollbar change, stop the CINE if it is playing
|
||||
cineService.stopClip(element);
|
||||
cineService.stopClip(element, { viewportId });
|
||||
cineService.setCine({ id: viewportId, isPlaying: false });
|
||||
}
|
||||
|
||||
@@ -49,7 +48,7 @@ function CornerstoneImageScrollbar({
|
||||
|
||||
setImageSliceData({
|
||||
imageIndex: imageIndex,
|
||||
numberOfSlices: viewportData.data.imageIds.length,
|
||||
numberOfSlices: viewportData.data[0].imageIds.length,
|
||||
});
|
||||
|
||||
return;
|
||||
@@ -79,7 +78,7 @@ function CornerstoneImageScrollbar({
|
||||
// find the index of imageId in the imageIds
|
||||
setImageSliceData({
|
||||
imageIndex: newImageIdIndex,
|
||||
numberOfSlices: viewportData.data.imageIds.length,
|
||||
numberOfSlices: viewportData.data[0].imageIds.length,
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
@@ -22,7 +22,7 @@ function ViewportOrientationMarkers({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
orientationMarkers = ['top', 'left'],
|
||||
}) {
|
||||
}: withAppTypes) {
|
||||
// Rotation is in degrees
|
||||
const [rotation, setRotation] = useState(0);
|
||||
const [flipHorizontal, setFlipHorizontal] = useState(false);
|
||||
@@ -67,7 +67,7 @@ function ViewportOrientationMarkers({
|
||||
let rowCosines, columnCosines;
|
||||
if (viewportData.viewportType === 'stack') {
|
||||
const imageIndex = imageSliceData.imageIndex;
|
||||
const imageId = viewportData.data.imageIds?.[imageIndex];
|
||||
const imageId = viewportData.data[0].imageIds?.[imageIndex];
|
||||
|
||||
// Workaround for below TODO stub
|
||||
if (!imageId) {
|
||||
@@ -108,17 +108,15 @@ function ViewportOrientationMarkers({
|
||||
console.log('ViewportOrientationMarkers::No viewport');
|
||||
return null;
|
||||
}
|
||||
const backgroundColor = ohifViewport.getViewportOptions().background;
|
||||
|
||||
// Todo: probably this can be done in a better way in which we identify bright
|
||||
// background
|
||||
const isLight = backgroundColor ? csUtils.isEqual(backgroundColor, [1, 1, 1]) : false;
|
||||
|
||||
return orientationMarkers.map((m, index) => (
|
||||
<div
|
||||
className={classNames(
|
||||
'overlay-text',
|
||||
`${m}-mid orientation-marker`,
|
||||
isLight ? 'text-[#726F7E]' : 'text-[#ccc]'
|
||||
'text-aqua-pale',
|
||||
'text-[13px]',
|
||||
'leading-5'
|
||||
)}
|
||||
key={`${m}-mid orientation-marker`}
|
||||
>
|
||||
@@ -135,7 +133,7 @@ function ViewportOrientationMarkers({
|
||||
element,
|
||||
]);
|
||||
|
||||
return <div className="ViewportOrientationMarkers noselect">{markers}</div>;
|
||||
return <div className="ViewportOrientationMarkers select-none">{markers}</div>;
|
||||
}
|
||||
|
||||
ViewportOrientationMarkers.propTypes = {
|
||||
|
||||
@@ -1,278 +0,0 @@
|
||||
import React, { useCallback, useEffect, useState } from 'react';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
import PropTypes from 'prop-types';
|
||||
import { metaData, Enums, utilities } from '@cornerstonejs/core';
|
||||
import { ViewportOverlay } from '@ohif/ui';
|
||||
import { ServicesManager } from '@ohif/core';
|
||||
|
||||
const EPSILON = 1e-4;
|
||||
|
||||
function CornerstoneViewportOverlay({
|
||||
element,
|
||||
viewportData,
|
||||
imageSliceData,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
}) {
|
||||
const { cornerstoneViewportService, toolbarService } = servicesManager.services;
|
||||
const [voi, setVOI] = useState({ windowCenter: null, windowWidth: null });
|
||||
const [scale, setScale] = useState(1);
|
||||
const [activeTools, setActiveTools] = useState([]);
|
||||
|
||||
/**
|
||||
* Initial toolbar state
|
||||
*/
|
||||
useEffect(() => {
|
||||
setActiveTools(toolbarService.getActiveTools());
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
let isMounted = true;
|
||||
const { unsubscribe } = toolbarService.subscribe(
|
||||
toolbarService.EVENTS.TOOL_BAR_STATE_MODIFIED,
|
||||
() => {
|
||||
if (!isMounted) {
|
||||
return;
|
||||
}
|
||||
|
||||
setActiveTools(toolbarService.getActiveTools());
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
isMounted = false;
|
||||
unsubscribe();
|
||||
};
|
||||
}, []);
|
||||
|
||||
/**
|
||||
* Updating the VOI when the viewport changes its voi
|
||||
*/
|
||||
useEffect(() => {
|
||||
const updateVOI = eventDetail => {
|
||||
const { range } = eventDetail.detail;
|
||||
|
||||
if (!range) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { lower, upper } = range;
|
||||
const { windowWidth, windowCenter } = utilities.windowLevel.toWindowLevel(lower, upper);
|
||||
|
||||
setVOI({ windowCenter, windowWidth });
|
||||
};
|
||||
|
||||
element.addEventListener(Enums.Events.VOI_MODIFIED, updateVOI);
|
||||
|
||||
return () => {
|
||||
element.removeEventListener(Enums.Events.VOI_MODIFIED, updateVOI);
|
||||
};
|
||||
}, [viewportId, viewportData, voi, element]);
|
||||
|
||||
/**
|
||||
* Updating the scale when the viewport changes its zoom
|
||||
*/
|
||||
useEffect(() => {
|
||||
const updateScale = eventDetail => {
|
||||
const { previousCamera, camera } = eventDetail.detail;
|
||||
|
||||
if (
|
||||
previousCamera.parallelScale !== camera.parallelScale ||
|
||||
previousCamera.scale !== camera.scale
|
||||
) {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!viewport) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageData = viewport.getImageData();
|
||||
|
||||
if (!imageData) {
|
||||
return;
|
||||
}
|
||||
|
||||
if (camera.scale) {
|
||||
setScale(camera.scale);
|
||||
return;
|
||||
}
|
||||
|
||||
const { spacing } = imageData;
|
||||
// convert parallel scale to scale
|
||||
const scale = (element.clientHeight * spacing[0] * 0.5) / camera.parallelScale;
|
||||
setScale(scale);
|
||||
}
|
||||
};
|
||||
|
||||
element.addEventListener(Enums.Events.CAMERA_MODIFIED, updateScale);
|
||||
|
||||
return () => {
|
||||
element.removeEventListener(Enums.Events.CAMERA_MODIFIED, updateScale);
|
||||
};
|
||||
}, [viewportId, viewportData]);
|
||||
|
||||
const getTopLeftContent = useCallback(() => {
|
||||
const { windowWidth, windowCenter } = voi;
|
||||
|
||||
if (activeTools.includes('WindowLevel')) {
|
||||
if (typeof windowCenter !== 'number' || typeof windowWidth !== 'number') {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<div className="flex flex-row text-base">
|
||||
<span className="mr-1">W:</span>
|
||||
<span className="ml-1 mr-2 font-light">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-1">L:</span>
|
||||
<span className="ml-1 font-light">{windowCenter.toFixed(0)}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
if (activeTools.includes('Zoom')) {
|
||||
return (
|
||||
<div className="flex flex-row text-base">
|
||||
<span className="mr-1">Zoom:</span>
|
||||
<span className="font-light">{scale.toFixed(2)}x</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
return null;
|
||||
}, [voi, scale, activeTools]);
|
||||
|
||||
const getTopRightContent = useCallback(() => {
|
||||
const { imageIndex, numberOfSlices } = imageSliceData;
|
||||
if (!viewportData) {
|
||||
return;
|
||||
}
|
||||
|
||||
let instanceNumber;
|
||||
|
||||
if (viewportData.viewportType === Enums.ViewportType.STACK) {
|
||||
instanceNumber = _getInstanceNumberFromStack(viewportData, imageIndex);
|
||||
|
||||
if (!instanceNumber) {
|
||||
return null;
|
||||
}
|
||||
} else if (viewportData.viewportType === Enums.ViewportType.ORTHOGRAPHIC) {
|
||||
instanceNumber = _getInstanceNumberFromVolume(
|
||||
viewportData,
|
||||
imageIndex,
|
||||
viewportId,
|
||||
cornerstoneViewportService
|
||||
);
|
||||
}
|
||||
|
||||
return (
|
||||
<div className="flex flex-row text-base">
|
||||
<span className="mr-1">I:</span>
|
||||
<span className="font-light">
|
||||
{instanceNumber !== undefined
|
||||
? `${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`
|
||||
: `${imageIndex + 1}/${numberOfSlices}`}
|
||||
</span>
|
||||
</div>
|
||||
);
|
||||
}, [imageSliceData, viewportData, viewportId]);
|
||||
|
||||
if (!viewportData) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const ohifViewport = cornerstoneViewportService.getViewportInfo(viewportId);
|
||||
|
||||
if (!ohifViewport) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const backgroundColor = ohifViewport.getViewportOptions().background;
|
||||
|
||||
// Todo: probably this can be done in a better way in which we identify bright
|
||||
// background
|
||||
const isLight = backgroundColor ? utilities.isEqual(backgroundColor, [1, 1, 1]) : false;
|
||||
|
||||
return (
|
||||
<ViewportOverlay
|
||||
topLeft={getTopLeftContent()}
|
||||
topRight={getTopRightContent()}
|
||||
color={isLight && 'text-[#0944B3]'}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
function _getInstanceNumberFromStack(viewportData, imageIndex) {
|
||||
const imageIds = viewportData.data.imageIds;
|
||||
const imageId = imageIds[imageIndex];
|
||||
|
||||
if (!imageId) {
|
||||
return;
|
||||
}
|
||||
|
||||
const generalImageModule = metaData.get('generalImageModule', imageId) || {};
|
||||
const { instanceNumber } = generalImageModule;
|
||||
|
||||
const stackSize = imageIds.length;
|
||||
|
||||
if (stackSize <= 1) {
|
||||
return;
|
||||
}
|
||||
|
||||
return parseInt(instanceNumber);
|
||||
}
|
||||
|
||||
// Since volume viewports can be in any view direction, they can render
|
||||
// a reconstructed image which don't have imageIds; therefore, no instance and instanceNumber
|
||||
// Here we check if viewport is in the acquisition direction and if so, we get the instanceNumber
|
||||
function _getInstanceNumberFromVolume(
|
||||
viewportData,
|
||||
imageIndex,
|
||||
viewportId,
|
||||
cornerstoneViewportService
|
||||
) {
|
||||
const volumes = viewportData.volumes;
|
||||
|
||||
// Todo: support fusion of acquisition plane which has instanceNumber
|
||||
if (!volumes || volumes.length > 1) {
|
||||
return;
|
||||
}
|
||||
|
||||
const volume = volumes[0];
|
||||
const { direction, imageIds } = volume;
|
||||
|
||||
const cornerstoneViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!cornerstoneViewport) {
|
||||
return;
|
||||
}
|
||||
|
||||
const camera = cornerstoneViewport.getCamera();
|
||||
const { viewPlaneNormal } = camera;
|
||||
// checking if camera is looking at the acquisition plane (defined by the direction on the volume)
|
||||
|
||||
const scanAxisNormal = direction.slice(6, 9);
|
||||
|
||||
// check if viewPlaneNormal is parallel to scanAxisNormal
|
||||
const cross = vec3.cross(vec3.create(), viewPlaneNormal, scanAxisNormal);
|
||||
const isAcquisitionPlane = vec3.length(cross) < EPSILON;
|
||||
|
||||
if (isAcquisitionPlane) {
|
||||
const imageId = imageIds[imageIndex];
|
||||
|
||||
if (!imageId) {
|
||||
return {};
|
||||
}
|
||||
|
||||
const { instanceNumber } = metaData.get('generalImageModule', imageId) || {};
|
||||
return parseInt(instanceNumber);
|
||||
}
|
||||
}
|
||||
|
||||
CornerstoneViewportOverlay.propTypes = {
|
||||
viewportData: PropTypes.object,
|
||||
imageIndex: PropTypes.number,
|
||||
viewportId: PropTypes.string,
|
||||
servicesManager: PropTypes.instanceOf(ServicesManager),
|
||||
};
|
||||
|
||||
export default CornerstoneViewportOverlay;
|
||||
@@ -3,6 +3,8 @@ import {
|
||||
StackViewport,
|
||||
VolumeViewport,
|
||||
utilities as csUtils,
|
||||
Types as CoreTypes,
|
||||
BaseVolumeViewport,
|
||||
} from '@cornerstonejs/core';
|
||||
import {
|
||||
ToolGroupManager,
|
||||
@@ -11,14 +13,19 @@ import {
|
||||
ReferenceLinesTool,
|
||||
} from '@cornerstonejs/tools';
|
||||
import { Types as OhifTypes } from '@ohif/core';
|
||||
import { vec3, mat4 } from 'gl-matrix';
|
||||
|
||||
import CornerstoneViewportDownloadForm from './utils/CornerstoneViewportDownloadForm';
|
||||
import callInputDialog from './utils/callInputDialog';
|
||||
import toggleStackImageSync from './utils/stackSync/toggleStackImageSync';
|
||||
import { callLabelAutocompleteDialog, showLabelAnnotationPopup } from './utils/callInputDialog';
|
||||
import toggleImageSliceSync from './utils/imageSliceSync/toggleImageSliceSync';
|
||||
import { getFirstAnnotationSelected } from './utils/measurementServiceMappings/utils/selection';
|
||||
import getActiveViewportEnabledElement from './utils/getActiveViewportEnabledElement';
|
||||
import { CornerstoneServices } from './types';
|
||||
import ImageOverlayViewerTool from './tools/ImageOverlayViewerTool';
|
||||
import toggleVOISliceSync from './utils/toggleVOISliceSync';
|
||||
|
||||
const toggleSyncFunctions = {
|
||||
imageSlice: toggleImageSliceSync,
|
||||
voi: toggleVOISliceSync,
|
||||
};
|
||||
|
||||
function commandsModule({
|
||||
servicesManager,
|
||||
@@ -28,19 +35,27 @@ function commandsModule({
|
||||
viewportGridService,
|
||||
toolGroupService,
|
||||
cineService,
|
||||
toolbarService,
|
||||
stateSyncService,
|
||||
uiDialogService,
|
||||
cornerstoneViewportService,
|
||||
uiNotificationService,
|
||||
measurementService,
|
||||
} = servicesManager.services as CornerstoneServices;
|
||||
customizationService,
|
||||
colorbarService,
|
||||
hangingProtocolService,
|
||||
syncGroupService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const { measurementServiceSource } = this;
|
||||
|
||||
function _getActiveViewportEnabledElement() {
|
||||
return getActiveViewportEnabledElement(viewportGridService);
|
||||
}
|
||||
|
||||
function _getActiveViewportToolGroupId() {
|
||||
const viewport = _getActiveViewportEnabledElement();
|
||||
return toolGroupService.getToolGroupForViewport(viewport.id);
|
||||
}
|
||||
|
||||
const actions = {
|
||||
/**
|
||||
* Generates the selector props for the context menu, specific to
|
||||
@@ -116,38 +131,29 @@ function commandsModule({
|
||||
? nearbyToolData
|
||||
: null;
|
||||
},
|
||||
|
||||
// Measurement tool commands:
|
||||
|
||||
/** Delete the given measurement */
|
||||
deleteMeasurement: ({ uid }) => {
|
||||
if (uid) {
|
||||
measurementServiceSource.remove(uid);
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* Show the measurement labelling input dialog and update the label
|
||||
* on the measurement with a response if not cancelled.
|
||||
*/
|
||||
setMeasurementLabel: ({ uid }) => {
|
||||
const labelConfig = customizationService.get('measurementLabels');
|
||||
const measurement = measurementService.getMeasurement(uid);
|
||||
|
||||
callInputDialog(
|
||||
uiDialogService,
|
||||
measurement,
|
||||
(label, actionId) => {
|
||||
if (actionId === 'cancel') {
|
||||
return;
|
||||
}
|
||||
|
||||
const updatedMeasurement = Object.assign({}, measurement, {
|
||||
label,
|
||||
});
|
||||
|
||||
measurementService.update(updatedMeasurement.uid, updatedMeasurement, true);
|
||||
},
|
||||
false
|
||||
showLabelAnnotationPopup(measurement, uiDialogService, labelConfig).then(
|
||||
(val: Map<any, any>) => {
|
||||
measurementService.update(
|
||||
uid,
|
||||
{
|
||||
...val,
|
||||
},
|
||||
true
|
||||
);
|
||||
}
|
||||
);
|
||||
},
|
||||
|
||||
@@ -156,7 +162,7 @@ function commandsModule({
|
||||
* @param props - containing the updates to apply
|
||||
* @param props.measurementKey - chooses the measurement key to apply the
|
||||
* code to. This will typically be finding or site to apply a
|
||||
* finind code or a findingSites code.
|
||||
* finding code or a findingSites code.
|
||||
* @param props.code - A coding scheme value from DICOM, including:
|
||||
* * CodeValue - the language independent code, for example '1234'
|
||||
* * CodingSchemeDesignator - the issue of the code value
|
||||
@@ -223,28 +229,22 @@ function commandsModule({
|
||||
|
||||
viewportGridService.setActiveViewportId(viewportId);
|
||||
},
|
||||
arrowTextCallback: ({ callback, data }) => {
|
||||
callInputDialog(uiDialogService, data, callback);
|
||||
arrowTextCallback: ({ callback, data, uid }) => {
|
||||
const labelConfig = customizationService.get('measurementLabels');
|
||||
callLabelAutocompleteDialog(uiDialogService, callback, {}, labelConfig);
|
||||
},
|
||||
toggleCine: () => {
|
||||
const { viewports } = viewportGridService.getState();
|
||||
const { isCineEnabled } = cineService.getState();
|
||||
cineService.setIsCineEnabled(!isCineEnabled);
|
||||
toolbarService.setButton('Cine', { props: { isActive: !isCineEnabled } });
|
||||
viewports.forEach((_, index) => cineService.setCine({ id: index, isPlaying: false }));
|
||||
},
|
||||
setWindowLevel({ window, level, toolGroupId }) {
|
||||
|
||||
setViewportWindowLevel({ viewportId, window, level }) {
|
||||
// convert to numbers
|
||||
const windowWidthNum = Number(window);
|
||||
const windowCenterNum = Number(level);
|
||||
|
||||
const { viewportId } = _getActiveViewportEnabledElement();
|
||||
const viewportToolGroupId = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
|
||||
if (toolGroupId && toolGroupId !== viewportToolGroupId) {
|
||||
return;
|
||||
}
|
||||
|
||||
// get actor from the viewport
|
||||
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
|
||||
const viewport = renderingEngine.getViewport(viewportId);
|
||||
@@ -260,30 +260,102 @@ function commandsModule({
|
||||
viewport.render();
|
||||
},
|
||||
|
||||
// Just call the toolbar service record interaction - allows
|
||||
// executing a toolbar command as a full toolbar command with side affects
|
||||
// coming from the ToolbarService itself.
|
||||
toolbarServiceRecordInteraction: props => {
|
||||
toolbarService.recordInteraction(props);
|
||||
toggleViewportColorbar: ({ viewportId, displaySetInstanceUIDs, options = {} }) => {
|
||||
const hasColorbar = colorbarService.hasColorbar(viewportId);
|
||||
if (hasColorbar) {
|
||||
colorbarService.removeColorbar(viewportId);
|
||||
return;
|
||||
}
|
||||
colorbarService.addColorbar(viewportId, displaySetInstanceUIDs, options);
|
||||
},
|
||||
|
||||
setToolActive: ({ toolName, toolGroupId = null, toggledState }) => {
|
||||
if (toolName === 'Crosshairs') {
|
||||
const activeViewportToolGroup = toolGroupService.getToolGroup(null);
|
||||
setWindowLevel(props) {
|
||||
const { toolGroupId } = props;
|
||||
const { viewportId } = _getActiveViewportEnabledElement();
|
||||
const viewportToolGroupId = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
|
||||
if (!activeViewportToolGroup._toolInstances.Crosshairs) {
|
||||
uiNotificationService.show({
|
||||
title: 'Crosshairs',
|
||||
message:
|
||||
'You need to be in a MPR view to use Crosshairs. Click on MPR button in the toolbar to activate it.',
|
||||
type: 'info',
|
||||
duration: 3000,
|
||||
});
|
||||
|
||||
throw new Error('Crosshairs tool is not available in this viewport');
|
||||
}
|
||||
if (toolGroupId && toolGroupId !== viewportToolGroupId) {
|
||||
return;
|
||||
}
|
||||
|
||||
actions.setViewportWindowLevel({ ...props, viewportId });
|
||||
},
|
||||
setToolEnabled: ({ toolName, toggle, toolGroupId }) => {
|
||||
const { viewports } = viewportGridService.getState();
|
||||
|
||||
if (!viewports.size) {
|
||||
return;
|
||||
}
|
||||
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId ?? null);
|
||||
|
||||
if (!toolGroup || !toolGroup.hasTool(toolName)) {
|
||||
return;
|
||||
}
|
||||
|
||||
const toolIsEnabled = toolGroup.getToolOptions(toolName).mode === Enums.ToolModes.Enabled;
|
||||
|
||||
// Toggle the tool's state only if the toggle is true
|
||||
if (toggle) {
|
||||
toolIsEnabled ? toolGroup.setToolDisabled(toolName) : toolGroup.setToolEnabled(toolName);
|
||||
} else {
|
||||
toolGroup.setToolEnabled(toolName);
|
||||
}
|
||||
|
||||
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
|
||||
renderingEngine.render();
|
||||
},
|
||||
toggleEnabledDisabledToolbar({ value, itemId, toolGroupId }) {
|
||||
const toolName = itemId || value;
|
||||
toolGroupId = toolGroupId ?? _getActiveViewportToolGroupId();
|
||||
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
if (!toolGroup || !toolGroup.hasTool(toolName)) {
|
||||
return;
|
||||
}
|
||||
|
||||
const toolIsEnabled = toolGroup.getToolOptions(toolName).mode === Enums.ToolModes.Enabled;
|
||||
|
||||
toolIsEnabled ? toolGroup.setToolDisabled(toolName) : toolGroup.setToolEnabled(toolName);
|
||||
},
|
||||
toggleActiveDisabledToolbar({ value, itemId, toolGroupId }) {
|
||||
const toolName = itemId || value;
|
||||
toolGroupId = toolGroupId ?? _getActiveViewportToolGroupId();
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
if (!toolGroup || !toolGroup.hasTool(toolName)) {
|
||||
return;
|
||||
}
|
||||
|
||||
const toolIsActive = [
|
||||
Enums.ToolModes.Active,
|
||||
Enums.ToolModes.Enabled,
|
||||
Enums.ToolModes.Passive,
|
||||
].includes(toolGroup.getToolOptions(toolName).mode);
|
||||
|
||||
toolIsActive
|
||||
? toolGroup.setToolDisabled(toolName)
|
||||
: actions.setToolActive({ toolName, toolGroupId });
|
||||
|
||||
// we should set the previously active tool to active after we set the
|
||||
// current tool disabled
|
||||
if (toolIsActive) {
|
||||
const prevToolName = toolGroup.getPrevActivePrimaryToolName();
|
||||
if (prevToolName !== toolName) {
|
||||
actions.setToolActive({ toolName: prevToolName, toolGroupId });
|
||||
}
|
||||
}
|
||||
},
|
||||
setToolActiveToolbar: ({ value, itemId, toolName, toolGroupIds = [] }) => {
|
||||
// Sometimes it is passed as value (tools with options), sometimes as itemId (toolbar buttons)
|
||||
toolName = toolName || itemId || value;
|
||||
|
||||
toolGroupIds = toolGroupIds.length ? toolGroupIds : toolGroupService.getToolGroupIds();
|
||||
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
actions.setToolActive({ toolName, toolGroupId });
|
||||
});
|
||||
},
|
||||
setToolActive: ({ toolName, toolGroupId = null }) => {
|
||||
const { viewports } = viewportGridService.getState();
|
||||
|
||||
if (!viewports.size) {
|
||||
@@ -291,49 +363,22 @@ function commandsModule({
|
||||
}
|
||||
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
const toolGroupViewportIds = toolGroup?.getViewportIds?.();
|
||||
|
||||
// if toolGroup has been destroyed, or its viewports have been removed
|
||||
if (!toolGroupViewportIds || !toolGroupViewportIds.length) {
|
||||
if (!toolGroup) {
|
||||
return;
|
||||
}
|
||||
|
||||
const filteredViewports = Array.from(viewports.values()).filter(viewport => {
|
||||
return toolGroupViewportIds.includes(viewport.viewportId);
|
||||
});
|
||||
|
||||
if (!filteredViewports.length) {
|
||||
if (!toolGroup.hasTool(toolName)) {
|
||||
return;
|
||||
}
|
||||
|
||||
if (!toolGroup.getToolInstance(toolName)) {
|
||||
uiNotificationService.show({
|
||||
title: `${toolName} tool`,
|
||||
message: `The ${toolName} tool is not available in this viewport.`,
|
||||
type: 'info',
|
||||
duration: 3000,
|
||||
});
|
||||
|
||||
throw new Error(`ToolGroup ${toolGroup.id} does not have this tool.`);
|
||||
}
|
||||
|
||||
const activeToolName = toolGroup.getActivePrimaryMouseButtonTool();
|
||||
|
||||
if (activeToolName) {
|
||||
// Todo: this is a hack to prevent the crosshairs to stick around
|
||||
// after another tool is selected. We should find a better way to do this
|
||||
if (activeToolName === 'Crosshairs') {
|
||||
toolGroup.setToolDisabled(activeToolName);
|
||||
} else {
|
||||
toolGroup.setToolPassive(activeToolName);
|
||||
}
|
||||
}
|
||||
|
||||
// If there is a toggle state, then simply set the enabled/disabled state without
|
||||
// setting the tool active.
|
||||
if (toggledState != null) {
|
||||
toggledState ? toolGroup.setToolEnabled(toolName) : toolGroup.setToolDisabled(toolName);
|
||||
return;
|
||||
const activeToolOptions = toolGroup.getToolConfiguration(activeToolName);
|
||||
activeToolOptions?.disableOnPassive
|
||||
? toolGroup.setToolDisabled(activeToolName)
|
||||
: toolGroup.setToolPassive(activeToolName);
|
||||
}
|
||||
|
||||
// Set the new toolName to be active
|
||||
@@ -369,6 +414,7 @@ function commandsModule({
|
||||
onClose: uiModalService.hide,
|
||||
cornerstoneViewportService,
|
||||
},
|
||||
containerDimensions: 'w-[70%] max-w-[900px]',
|
||||
});
|
||||
}
|
||||
},
|
||||
@@ -380,8 +426,16 @@ function commandsModule({
|
||||
|
||||
const { viewport } = enabledElement;
|
||||
|
||||
if (viewport instanceof StackViewport) {
|
||||
const { rotation: currentRotation } = viewport.getProperties();
|
||||
if (viewport instanceof BaseVolumeViewport) {
|
||||
const camera = viewport.getCamera();
|
||||
const rotAngle = (rotation * Math.PI) / 180;
|
||||
const rotMat = mat4.identity(new Float32Array(16));
|
||||
mat4.rotate(rotMat, rotMat, rotAngle, camera.viewPlaneNormal);
|
||||
const rotatedViewUp = vec3.transformMat4(vec3.create(), camera.viewUp, rotMat);
|
||||
viewport.setCamera({ viewUp: rotatedViewUp as CoreTypes.Point3 });
|
||||
viewport.render();
|
||||
} else if (viewport.getRotation !== undefined) {
|
||||
const currentRotation = viewport.getRotation();
|
||||
const newRotation = (currentRotation + rotation) % 360;
|
||||
viewport.setProperties({ rotation: newRotation });
|
||||
viewport.render();
|
||||
@@ -396,11 +450,9 @@ function commandsModule({
|
||||
|
||||
const { viewport } = enabledElement;
|
||||
|
||||
if (viewport instanceof StackViewport) {
|
||||
const { flipHorizontal } = viewport.getCamera();
|
||||
viewport.setCamera({ flipHorizontal: !flipHorizontal });
|
||||
viewport.render();
|
||||
}
|
||||
const { flipHorizontal } = viewport.getCamera();
|
||||
viewport.setCamera({ flipHorizontal: !flipHorizontal });
|
||||
viewport.render();
|
||||
},
|
||||
flipViewportVertical: () => {
|
||||
const enabledElement = _getActiveViewportEnabledElement();
|
||||
@@ -411,11 +463,9 @@ function commandsModule({
|
||||
|
||||
const { viewport } = enabledElement;
|
||||
|
||||
if (viewport instanceof StackViewport) {
|
||||
const { flipVertical } = viewport.getCamera();
|
||||
viewport.setCamera({ flipVertical: !flipVertical });
|
||||
viewport.render();
|
||||
}
|
||||
const { flipVertical } = viewport.getCamera();
|
||||
viewport.setCamera({ flipVertical: !flipVertical });
|
||||
viewport.render();
|
||||
},
|
||||
invertViewport: ({ element }) => {
|
||||
let enabledElement;
|
||||
@@ -445,13 +495,8 @@ function commandsModule({
|
||||
|
||||
const { viewport } = enabledElement;
|
||||
|
||||
if (viewport instanceof StackViewport) {
|
||||
viewport.resetProperties();
|
||||
viewport.resetCamera();
|
||||
} else {
|
||||
// Todo: add reset properties for volume viewport
|
||||
viewport.resetCamera();
|
||||
}
|
||||
viewport.resetProperties?.();
|
||||
viewport.resetCamera();
|
||||
|
||||
viewport.render();
|
||||
},
|
||||
@@ -523,18 +568,51 @@ function commandsModule({
|
||||
|
||||
cstUtils.scroll(viewport, options);
|
||||
},
|
||||
setViewportColormap: ({ viewportId, displaySetInstanceUID, colormap, immediate = false }) => {
|
||||
setViewportColormap: ({
|
||||
viewportId,
|
||||
displaySetInstanceUID,
|
||||
colormap,
|
||||
opacity = 1,
|
||||
immediate = false,
|
||||
}) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
const actorEntries = viewport.getActors();
|
||||
let hpOpacity;
|
||||
// Retrieve active protocol's viewport match details
|
||||
const { viewportMatchDetails } = hangingProtocolService.getActiveProtocol();
|
||||
// Get display set options for the specified viewport ID
|
||||
const displaySetsInfo = viewportMatchDetails.get(viewportId)?.displaySetsInfo;
|
||||
|
||||
const actorEntry = actorEntries.find(actorEntry => {
|
||||
return actorEntry.uid.includes(displaySetInstanceUID);
|
||||
});
|
||||
if (displaySetsInfo) {
|
||||
// Find the display set that matches the given UID
|
||||
const matchingDisplaySet = displaySetsInfo.find(
|
||||
displaySet => displaySet.displaySetInstanceUID === displaySetInstanceUID
|
||||
);
|
||||
// If a matching display set is found, update the opacity with its value
|
||||
hpOpacity = matchingDisplaySet?.displaySetOptions?.options?.colormap?.opacity;
|
||||
}
|
||||
|
||||
const { actor: volumeActor, uid: volumeId } = actorEntry;
|
||||
// HP takes priority over the default opacity
|
||||
colormap = { ...colormap, opacity: hpOpacity || opacity };
|
||||
|
||||
viewport.setProperties({ colormap, volumeActor }, volumeId);
|
||||
const setViewportProperties = (viewport, uid) => {
|
||||
const actorEntry = actorEntries.find(entry => entry.uid.includes(uid));
|
||||
const { actor: volumeActor, uid: volumeId } = actorEntry;
|
||||
viewport.setProperties({ colormap, volumeActor }, volumeId);
|
||||
};
|
||||
|
||||
if (viewport instanceof StackViewport) {
|
||||
setViewportProperties(viewport, viewportId);
|
||||
}
|
||||
|
||||
if (viewport instanceof VolumeViewport) {
|
||||
if (!displaySetInstanceUID) {
|
||||
const { viewports } = viewportGridService.getState();
|
||||
displaySetInstanceUID = viewports.get(viewportId)?.displaySetInstanceUIDs[0];
|
||||
}
|
||||
setViewportProperties(viewport, displaySetInstanceUID);
|
||||
}
|
||||
|
||||
if (immediate) {
|
||||
viewport.render();
|
||||
@@ -548,32 +626,207 @@ function commandsModule({
|
||||
(currentIndex + direction + viewportIds.length) % viewportIds.length;
|
||||
viewportGridService.setActiveViewportId(viewportIds[nextViewportIndex] as string);
|
||||
},
|
||||
/**
|
||||
* If the syncId is given and a synchronizer with that ID already exists, it will
|
||||
* toggle it on/off for the provided viewports. If not, it will attempt to create
|
||||
* a new synchronizer using the given syncId and type for the specified viewports.
|
||||
* If no viewports are provided, you may notice some default behavior.
|
||||
* - 'voi' type, we will aim to synchronize all viewports with the same modality
|
||||
* -'imageSlice' type, we will aim to synchronize all viewports with the same orientation.
|
||||
*
|
||||
* @param options
|
||||
* @param options.viewports - The viewports to synchronize
|
||||
* @param options.syncId - The synchronization group ID
|
||||
* @param options.type - The type of synchronization to perform
|
||||
*/
|
||||
toggleSynchronizer: ({ type, viewports, syncId }) => {
|
||||
const synchronizer = syncGroupService.getSynchronizer(syncId);
|
||||
|
||||
toggleStackImageSync: ({ toggledState }) => {
|
||||
toggleStackImageSync({
|
||||
getEnabledElement,
|
||||
servicesManager,
|
||||
toggledState,
|
||||
});
|
||||
if (synchronizer) {
|
||||
synchronizer.isDisabled() ? synchronizer.setEnabled(true) : synchronizer.setEnabled(false);
|
||||
return;
|
||||
}
|
||||
|
||||
const fn = toggleSyncFunctions[type];
|
||||
|
||||
if (fn) {
|
||||
fn({
|
||||
servicesManager,
|
||||
viewports,
|
||||
syncId,
|
||||
});
|
||||
}
|
||||
},
|
||||
setSourceViewportForReferenceLinesTool: ({ toggledState }) => {
|
||||
const { activeViewportId } = viewportGridService.getState();
|
||||
const viewportInfo = cornerstoneViewportService.getViewportInfo(activeViewportId);
|
||||
setSourceViewportForReferenceLinesTool: ({ viewportId }) => {
|
||||
if (!viewportId) {
|
||||
const { activeViewportId } = viewportGridService.getState();
|
||||
viewportId = activeViewportId ?? 'default';
|
||||
}
|
||||
|
||||
const viewportId = viewportInfo.getViewportId();
|
||||
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
|
||||
toolGroup.setToolConfiguration(
|
||||
toolGroup?.setToolConfiguration(
|
||||
ReferenceLinesTool.toolName,
|
||||
{
|
||||
sourceViewportId: viewportId,
|
||||
},
|
||||
true // overwrite
|
||||
);
|
||||
|
||||
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
|
||||
renderingEngine.render();
|
||||
},
|
||||
storePresentation: ({ viewportId }) => {
|
||||
cornerstoneViewportService.storePresentation({ viewportId });
|
||||
},
|
||||
updateVolumeData: ({ volume }) => {
|
||||
// update vtkOpenGLTexture and imageData of computed volume
|
||||
const { imageData, vtkOpenGLTexture } = volume;
|
||||
const numSlices = imageData.getDimensions()[2];
|
||||
const slicesToUpdate = [...Array(numSlices).keys()];
|
||||
slicesToUpdate.forEach(i => {
|
||||
vtkOpenGLTexture.setUpdatedFrame(i);
|
||||
});
|
||||
imageData.modified();
|
||||
},
|
||||
|
||||
attachProtocolViewportDataListener: ({ protocol, stageIndex }) => {
|
||||
const EVENT = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
|
||||
const command = protocol.callbacks.onViewportDataInitialized;
|
||||
const numPanes = protocol.stages?.[stageIndex]?.viewports.length ?? 1;
|
||||
let numPanesWithData = 0;
|
||||
const { unsubscribe } = cornerstoneViewportService.subscribe(EVENT, evt => {
|
||||
numPanesWithData++;
|
||||
|
||||
if (numPanesWithData === numPanes) {
|
||||
commandsManager.run(...command);
|
||||
|
||||
// Unsubscribe from the event
|
||||
unsubscribe(EVENT);
|
||||
}
|
||||
});
|
||||
},
|
||||
|
||||
setViewportPreset: ({ viewportId, preset }) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
if (!viewport) {
|
||||
return;
|
||||
}
|
||||
viewport.setProperties({
|
||||
preset,
|
||||
});
|
||||
viewport.render();
|
||||
},
|
||||
|
||||
/**
|
||||
* Sets the volume quality for a given viewport.
|
||||
* @param {string} viewportId - The ID of the viewport to set the volume quality.
|
||||
* @param {number} volumeQuality - The desired quality level of the volume rendering.
|
||||
*/
|
||||
|
||||
setVolumeRenderingQulaity: ({ viewportId, volumeQuality }) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const { actor } = viewport.getActors()[0];
|
||||
const mapper = actor.getMapper();
|
||||
const image = mapper.getInputData();
|
||||
const dims = image.getDimensions();
|
||||
const spacing = image.getSpacing();
|
||||
const spatialDiagonal = vec3.length(
|
||||
vec3.fromValues(dims[0] * spacing[0], dims[1] * spacing[1], dims[2] * spacing[2])
|
||||
);
|
||||
|
||||
let sampleDistance = spacing.reduce((a, b) => a + b) / 3.0;
|
||||
sampleDistance /= volumeQuality > 1 ? 0.5 * volumeQuality ** 2 : 1.0;
|
||||
const samplesPerRay = spatialDiagonal / sampleDistance + 1;
|
||||
mapper.setMaximumSamplesPerRay(samplesPerRay);
|
||||
mapper.setSampleDistance(sampleDistance);
|
||||
viewport.render();
|
||||
},
|
||||
|
||||
/**
|
||||
* Shifts opacity points for a given viewport id.
|
||||
* @param {string} viewportId - The ID of the viewport to set the mapping range.
|
||||
* @param {number} shift - The shift value to shift the points by.
|
||||
*/
|
||||
shiftVolumeOpacityPoints: ({ viewportId, shift }) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const { actor } = viewport.getActors()[0];
|
||||
const ofun = actor.getProperty().getScalarOpacity(0);
|
||||
|
||||
const opacityPointValues = []; // Array to hold values
|
||||
// Gather Existing Values
|
||||
const size = ofun.getSize();
|
||||
for (let pointIdx = 0; pointIdx < size; pointIdx++) {
|
||||
const opacityPointValue = [0, 0, 0, 0];
|
||||
ofun.getNodeValue(pointIdx, opacityPointValue);
|
||||
// opacityPointValue now holds [xLocation, opacity, midpoint, sharpness]
|
||||
opacityPointValues.push(opacityPointValue);
|
||||
}
|
||||
// Add offset
|
||||
opacityPointValues.forEach(opacityPointValue => {
|
||||
opacityPointValue[0] += shift; // Change the location value
|
||||
});
|
||||
// Set new values
|
||||
ofun.removeAllPoints();
|
||||
opacityPointValues.forEach(opacityPointValue => {
|
||||
ofun.addPoint(...opacityPointValue);
|
||||
});
|
||||
viewport.render();
|
||||
},
|
||||
|
||||
/**
|
||||
* Sets the volume lighting settings for a given viewport.
|
||||
* @param {string} viewportId - The ID of the viewport to set the lighting settings.
|
||||
* @param {Object} options - The lighting settings to be set.
|
||||
* @param {boolean} options.shade - The shade setting for the lighting.
|
||||
* @param {number} options.ambient - The ambient setting for the lighting.
|
||||
* @param {number} options.diffuse - The diffuse setting for the lighting.
|
||||
* @param {number} options.specular - The specular setting for the lighting.
|
||||
**/
|
||||
|
||||
setVolumeLighting: ({ viewportId, options }) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const { actor } = viewport.getActors()[0];
|
||||
const property = actor.getProperty();
|
||||
|
||||
if (options.shade !== undefined) {
|
||||
property.setShade(options.shade);
|
||||
}
|
||||
|
||||
if (options.ambient !== undefined) {
|
||||
property.setAmbient(options.ambient);
|
||||
}
|
||||
|
||||
if (options.diffuse !== undefined) {
|
||||
property.setDiffuse(options.diffuse);
|
||||
}
|
||||
|
||||
if (options.specular !== undefined) {
|
||||
property.setSpecular(options.specular);
|
||||
}
|
||||
|
||||
viewport.render();
|
||||
},
|
||||
resetCrosshairs: ({ viewportId }) => {
|
||||
const crosshairInstances = [];
|
||||
|
||||
const getCrosshairInstances = toolGroupId => {
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
crosshairInstances.push(toolGroup.getToolInstance('Crosshairs'));
|
||||
};
|
||||
|
||||
if (!viewportId) {
|
||||
const toolGroupIds = toolGroupService.getToolGroupIds();
|
||||
toolGroupIds.forEach(getCrosshairInstances);
|
||||
} else {
|
||||
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
getCrosshairInstances(toolGroup.id);
|
||||
}
|
||||
|
||||
crosshairInstances.forEach(ins => {
|
||||
ins?.resetCrosshairs();
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
@@ -581,7 +834,6 @@ function commandsModule({
|
||||
// context menu
|
||||
showCornerstoneContextMenu: {
|
||||
commandFn: actions.showCornerstoneContextMenu,
|
||||
storeContexts: [],
|
||||
options: {
|
||||
menuCustomizationId: 'measurementsContextMenu',
|
||||
commands: [
|
||||
@@ -600,7 +852,9 @@ function commandsModule({
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
|
||||
toggleViewportColorbar: {
|
||||
commandFn: actions.toggleViewportColorbar,
|
||||
},
|
||||
deleteMeasurement: {
|
||||
commandFn: actions.deleteMeasurement,
|
||||
},
|
||||
@@ -610,16 +864,21 @@ function commandsModule({
|
||||
updateMeasurement: {
|
||||
commandFn: actions.updateMeasurement,
|
||||
},
|
||||
|
||||
setViewportWindowLevel: {
|
||||
commandFn: actions.setViewportWindowLevel,
|
||||
},
|
||||
setWindowLevel: {
|
||||
commandFn: actions.setWindowLevel,
|
||||
},
|
||||
toolbarServiceRecordInteraction: {
|
||||
commandFn: actions.toolbarServiceRecordInteraction,
|
||||
},
|
||||
setToolActive: {
|
||||
commandFn: actions.setToolActive,
|
||||
},
|
||||
setToolActiveToolbar: {
|
||||
commandFn: actions.setToolActiveToolbar,
|
||||
},
|
||||
setToolEnabled: {
|
||||
commandFn: actions.setToolEnabled,
|
||||
},
|
||||
rotateViewportCW: {
|
||||
commandFn: actions.rotateViewport,
|
||||
options: { rotation: 90 },
|
||||
@@ -693,16 +952,41 @@ function commandsModule({
|
||||
setViewportColormap: {
|
||||
commandFn: actions.setViewportColormap,
|
||||
},
|
||||
toggleStackImageSync: {
|
||||
commandFn: actions.toggleStackImageSync,
|
||||
},
|
||||
setSourceViewportForReferenceLinesTool: {
|
||||
commandFn: actions.setSourceViewportForReferenceLinesTool,
|
||||
},
|
||||
storePresentation: {
|
||||
commandFn: actions.storePresentation,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
attachProtocolViewportDataListener: {
|
||||
commandFn: actions.attachProtocolViewportDataListener,
|
||||
},
|
||||
setViewportPreset: {
|
||||
commandFn: actions.setViewportPreset,
|
||||
},
|
||||
setVolumeRenderingQulaity: {
|
||||
commandFn: actions.setVolumeRenderingQulaity,
|
||||
},
|
||||
shiftVolumeOpacityPoints: {
|
||||
commandFn: actions.shiftVolumeOpacityPoints,
|
||||
},
|
||||
setVolumeLighting: {
|
||||
commandFn: actions.setVolumeLighting,
|
||||
},
|
||||
resetCrosshairs: {
|
||||
commandFn: actions.resetCrosshairs,
|
||||
},
|
||||
toggleSynchronizer: {
|
||||
commandFn: actions.toggleSynchronizer,
|
||||
},
|
||||
updateVolumeData: {
|
||||
commandFn: actions.updateVolumeData,
|
||||
},
|
||||
toggleEnabledDisabledToolbar: {
|
||||
commandFn: actions.toggleEnabledDisabledToolbar,
|
||||
},
|
||||
toggleActiveDisabledToolbar: {
|
||||
commandFn: actions.toggleActiveDisabledToolbar,
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
+26
@@ -0,0 +1,26 @@
|
||||
import React, { ReactElement } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useViewportGrid } from '@ohif/ui';
|
||||
import ViewportWindowLevel from '../ViewportWindowLevel/ViewportWindowLevel';
|
||||
|
||||
const ActiveViewportWindowLevel = ({ servicesManager }: withAppTypes): ReactElement => {
|
||||
const [viewportGrid] = useViewportGrid();
|
||||
const { activeViewportId } = viewportGrid;
|
||||
|
||||
return (
|
||||
<>
|
||||
{activeViewportId && (
|
||||
<ViewportWindowLevel
|
||||
servicesManager={servicesManager}
|
||||
viewportId={activeViewportId}
|
||||
/>
|
||||
)}
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
ActiveViewportWindowLevel.propTypes = {
|
||||
servicesManager: PropTypes.object.isRequired,
|
||||
};
|
||||
|
||||
export default ActiveViewportWindowLevel;
|
||||
@@ -0,0 +1 @@
|
||||
export { default } from './ActiveViewportWindowLevel';
|
||||
@@ -1,96 +1,244 @@
|
||||
import React, { useEffect } from 'react';
|
||||
import { CinePlayer, useCine, useViewportGrid } from '@ohif/ui';
|
||||
import { Enums, eventTarget } from '@cornerstonejs/core';
|
||||
import React, { useCallback, useEffect, useState, useRef } from 'react';
|
||||
import { CinePlayer, useCine } from '@ohif/ui';
|
||||
import { Enums, eventTarget, cache } from '@cornerstonejs/core';
|
||||
import { Enums as StreamingEnums } from '@cornerstonejs/streaming-image-volume-loader';
|
||||
import { useAppConfig } from '@state';
|
||||
|
||||
function WrappedCinePlayer({ enabledVPElement, viewportId, servicesManager }) {
|
||||
const { toolbarService, customizationService } = servicesManager.services;
|
||||
function WrappedCinePlayer({
|
||||
enabledVPElement,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
}: withAppTypes<{
|
||||
enabledVPElement: HTMLElement;
|
||||
viewportId: string;
|
||||
}>) {
|
||||
const { customizationService, displaySetService, viewportGridService } = servicesManager.services;
|
||||
const [{ isCineEnabled, cines }, cineService] = useCine();
|
||||
const [{ activeViewportId }] = useViewportGrid();
|
||||
|
||||
const { component: CinePlayerComponent = CinePlayer } =
|
||||
customizationService.get('cinePlayer') ?? {};
|
||||
|
||||
const handleCineClose = () => {
|
||||
toolbarService.recordInteraction({
|
||||
groupId: 'MoreTools',
|
||||
itemId: 'cine',
|
||||
interactionType: 'toggle',
|
||||
commands: [
|
||||
{
|
||||
commandName: 'toggleCine',
|
||||
commandOptions: {},
|
||||
context: 'CORNERSTONE',
|
||||
},
|
||||
],
|
||||
});
|
||||
};
|
||||
const [newStackFrameRate, setNewStackFrameRate] = useState(24);
|
||||
const [dynamicInfo, setDynamicInfo] = useState(null);
|
||||
const [appConfig] = useAppConfig();
|
||||
const isMountedRef = useRef(null);
|
||||
|
||||
const cineHandler = () => {
|
||||
if (!cines || !cines[viewportId] || !enabledVPElement) {
|
||||
if (!cines?.[viewportId] || !enabledVPElement) {
|
||||
return;
|
||||
}
|
||||
|
||||
const cine = cines[viewportId];
|
||||
const isPlaying = cine.isPlaying || false;
|
||||
const frameRate = cine.frameRate || 24;
|
||||
|
||||
const { isPlaying = false, frameRate = 24 } = cines[viewportId];
|
||||
const validFrameRate = Math.max(frameRate, 1);
|
||||
|
||||
if (isPlaying) {
|
||||
cineService.playClip(enabledVPElement, {
|
||||
framesPerSecond: validFrameRate,
|
||||
});
|
||||
} else {
|
||||
cineService.stopClip(enabledVPElement);
|
||||
}
|
||||
return isPlaying
|
||||
? cineService.playClip(enabledVPElement, { framesPerSecond: validFrameRate, viewportId })
|
||||
: cineService.stopClip(enabledVPElement);
|
||||
};
|
||||
|
||||
const newDisplaySetHandler = useCallback(() => {
|
||||
if (!enabledVPElement || !isCineEnabled) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { viewports } = viewportGridService.getState();
|
||||
const { displaySetInstanceUIDs } = viewports.get(viewportId);
|
||||
let frameRate = 24;
|
||||
let isPlaying = cines[viewportId]?.isPlaying || false;
|
||||
displaySetInstanceUIDs.forEach(displaySetInstanceUID => {
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
if (displaySet.FrameRate) {
|
||||
// displaySet.FrameRate corresponds to DICOM tag (0018,1063) which is defined as the the frame time in milliseconds
|
||||
// So a bit of math to get the actual frame rate.
|
||||
frameRate = Math.round(1000 / displaySet.FrameRate);
|
||||
isPlaying ||= !!appConfig.autoPlayCine;
|
||||
}
|
||||
|
||||
// check if the displaySet is dynamic and set the dynamic info
|
||||
if (displaySet.isDynamicVolume) {
|
||||
const { dynamicVolumeInfo } = displaySet;
|
||||
const numTimePoints = dynamicVolumeInfo.timePoints.length;
|
||||
const label = dynamicVolumeInfo.splittingTag;
|
||||
const timePointIndex = dynamicVolumeInfo.timePointIndex || 0;
|
||||
setDynamicInfo({
|
||||
volumeId: displaySet.displaySetInstanceUID,
|
||||
timePointIndex,
|
||||
numTimePoints,
|
||||
label,
|
||||
});
|
||||
} else {
|
||||
setDynamicInfo(null);
|
||||
}
|
||||
});
|
||||
|
||||
if (isPlaying) {
|
||||
cineService.setIsCineEnabled(isPlaying);
|
||||
}
|
||||
cineService.setCine({ id: viewportId, isPlaying, frameRate });
|
||||
setNewStackFrameRate(frameRate);
|
||||
}, [displaySetService, viewportId, viewportGridService, cines, isCineEnabled, enabledVPElement]);
|
||||
|
||||
useEffect(() => {
|
||||
eventTarget.addEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, cineHandler);
|
||||
isMountedRef.current = true;
|
||||
|
||||
newDisplaySetHandler();
|
||||
|
||||
return () => {
|
||||
isMountedRef.current = false;
|
||||
};
|
||||
}, [isCineEnabled, newDisplaySetHandler]);
|
||||
|
||||
useEffect(() => {
|
||||
if (!isCineEnabled) {
|
||||
return;
|
||||
}
|
||||
|
||||
cineHandler();
|
||||
}, [isCineEnabled, cineHandler, enabledVPElement]);
|
||||
|
||||
/**
|
||||
* Use effect for handling new display set
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (!enabledVPElement) {
|
||||
return;
|
||||
}
|
||||
|
||||
eventTarget.addEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newDisplaySetHandler);
|
||||
// this doesn't makes sense that we are listening to this event on viewport element
|
||||
enabledVPElement.addEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
newDisplaySetHandler
|
||||
);
|
||||
|
||||
return () => {
|
||||
cineService.setCine({ id: viewportId, isPlaying: false });
|
||||
eventTarget.removeEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, cineHandler);
|
||||
|
||||
eventTarget.removeEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newDisplaySetHandler);
|
||||
enabledVPElement.removeEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
newDisplaySetHandler
|
||||
);
|
||||
};
|
||||
}, [enabledVPElement]);
|
||||
}, [enabledVPElement, newDisplaySetHandler, viewportId]);
|
||||
|
||||
useEffect(() => {
|
||||
if (!cines || !cines[viewportId] || !enabledVPElement) {
|
||||
if (!cines || !cines[viewportId] || !enabledVPElement || !isMountedRef.current) {
|
||||
return;
|
||||
}
|
||||
|
||||
cineHandler();
|
||||
|
||||
return () => {
|
||||
if (enabledVPElement && cines?.[viewportId]?.isPlaying) {
|
||||
cineService.stopClip(enabledVPElement);
|
||||
}
|
||||
cineService.stopClip(enabledVPElement, { viewportId });
|
||||
};
|
||||
}, [cines, viewportId, cineService, enabledVPElement, cineHandler]);
|
||||
|
||||
if (!isCineEnabled) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const cine = cines[viewportId];
|
||||
const isPlaying = (cine && cine.isPlaying) || false;
|
||||
const isPlaying = cine?.isPlaying || false;
|
||||
|
||||
return (
|
||||
isCineEnabled && (
|
||||
<CinePlayerComponent
|
||||
className="absolute left-1/2 bottom-3 -translate-x-1/2"
|
||||
isPlaying={isPlaying}
|
||||
onClose={handleCineClose}
|
||||
onPlayPauseChange={isPlaying =>
|
||||
cineService.setCine({
|
||||
id: activeViewportId,
|
||||
isPlaying,
|
||||
})
|
||||
}
|
||||
onFrameRateChange={frameRate =>
|
||||
cineService.setCine({
|
||||
id: activeViewportId,
|
||||
frameRate,
|
||||
})
|
||||
}
|
||||
/>
|
||||
)
|
||||
<RenderCinePlayer
|
||||
viewportId={viewportId}
|
||||
cineService={cineService}
|
||||
newStackFrameRate={newStackFrameRate}
|
||||
isPlaying={isPlaying}
|
||||
dynamicInfo={dynamicInfo}
|
||||
customizationService={customizationService}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
function RenderCinePlayer({
|
||||
viewportId,
|
||||
cineService,
|
||||
newStackFrameRate,
|
||||
isPlaying,
|
||||
dynamicInfo: dynamicInfoProp,
|
||||
customizationService,
|
||||
}) {
|
||||
const { component: CinePlayerComponent = CinePlayer } =
|
||||
customizationService.get('cinePlayer') ?? {};
|
||||
|
||||
const [dynamicInfo, setDynamicInfo] = useState(dynamicInfoProp);
|
||||
|
||||
useEffect(() => {
|
||||
setDynamicInfo(dynamicInfoProp);
|
||||
}, [dynamicInfoProp]);
|
||||
|
||||
/**
|
||||
* Use effect for handling 4D time index changed
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (!dynamicInfo) {
|
||||
return;
|
||||
}
|
||||
|
||||
const handleTimePointIndexChange = evt => {
|
||||
const { volumeId, timePointIndex, numTimePoints, splittingTag } = evt.detail;
|
||||
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(
|
||||
StreamingEnums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
|
||||
handleTimePointIndexChange
|
||||
);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(
|
||||
StreamingEnums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
|
||||
handleTimePointIndexChange
|
||||
);
|
||||
};
|
||||
}, [dynamicInfo]);
|
||||
|
||||
useEffect(() => {
|
||||
if (!dynamicInfo) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { volumeId, timePointIndex, numTimePoints, splittingTag } = dynamicInfo || {};
|
||||
const volume = cache.getVolume(volumeId);
|
||||
volume.timePointIndex = timePointIndex;
|
||||
|
||||
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
|
||||
}, []);
|
||||
|
||||
const updateDynamicInfo = useCallback(props => {
|
||||
const { volumeId, timePointIndex } = props;
|
||||
const volume = cache.getVolume(volumeId);
|
||||
volume.timePointIndex = timePointIndex;
|
||||
}, []);
|
||||
|
||||
return (
|
||||
<CinePlayerComponent
|
||||
className="absolute left-1/2 bottom-3 -translate-x-1/2"
|
||||
frameRate={newStackFrameRate}
|
||||
isPlaying={isPlaying}
|
||||
onClose={() => {
|
||||
// also stop the clip
|
||||
cineService.setCine({
|
||||
id: viewportId,
|
||||
isPlaying: false,
|
||||
});
|
||||
cineService.setIsCineEnabled(false);
|
||||
}}
|
||||
onPlayPauseChange={isPlaying => {
|
||||
cineService.setCine({
|
||||
id: viewportId,
|
||||
isPlaying,
|
||||
});
|
||||
}}
|
||||
onFrameRateChange={frameRate =>
|
||||
cineService.setCine({
|
||||
id: viewportId,
|
||||
frameRate,
|
||||
})
|
||||
}
|
||||
dynamicInfo={dynamicInfo}
|
||||
updateDynamicInfo={updateDynamicInfo}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
@@ -0,0 +1,23 @@
|
||||
import React from 'react';
|
||||
import { useViewportActionCornersContext } from '../contextProviders/ViewportActionCornersProvider';
|
||||
import { ViewportActionCorners } from '@ohif/ui';
|
||||
|
||||
export type OHIFViewportActionCornersProps = {
|
||||
viewportId: string;
|
||||
};
|
||||
|
||||
function OHIFViewportActionCorners({ viewportId }: OHIFViewportActionCornersProps) {
|
||||
const [viewportActionCornersState] = useViewportActionCornersContext();
|
||||
|
||||
if (!viewportActionCornersState[viewportId]) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<ViewportActionCorners
|
||||
cornerComponents={viewportActionCornersState[viewportId]}
|
||||
></ViewportActionCorners>
|
||||
);
|
||||
}
|
||||
|
||||
export default OHIFViewportActionCorners;
|
||||
@@ -0,0 +1,385 @@
|
||||
import React, { useEffect, useCallback, useState, ReactElement } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import debounce from 'lodash.debounce';
|
||||
import { PanelSection, WindowLevel } from '@ohif/ui';
|
||||
import vtkColorMaps from '@kitware/vtk.js/Rendering/Core/ColorTransferFunction/ColorMaps';
|
||||
import { Enums, eventTarget, cache as cs3DCache, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import { getViewportVolumeHistogram } from './getViewportVolumeHistogram';
|
||||
|
||||
const { Events } = Enums;
|
||||
|
||||
const ViewportWindowLevel = ({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
}: withAppTypes<{
|
||||
viewportId: string;
|
||||
}>): ReactElement => {
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
const [windowLevels, setWindowLevels] = useState([]);
|
||||
const [cachedHistograms, setCachedHistograms] = useState({});
|
||||
|
||||
/**
|
||||
* Looks for all viewports that has exactly all volumeIds passed as parameter.
|
||||
*/
|
||||
const getViewportsWithVolumeIds = useCallback(
|
||||
(volumeIds: string[]) => {
|
||||
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
|
||||
const viewports = renderingEngine.getVolumeViewports();
|
||||
|
||||
return viewports.filter(vp => {
|
||||
const viewportVolumeIds = vp.getActors().map(actor => actor.uid);
|
||||
|
||||
return (
|
||||
volumeIds.length === viewportVolumeIds.length &&
|
||||
volumeIds.every(volumeId => viewportVolumeIds.includes(volumeId))
|
||||
);
|
||||
});
|
||||
},
|
||||
[cornerstoneViewportService]
|
||||
);
|
||||
|
||||
const getNodeOpacity = (volumeActor, nodeIndex) => {
|
||||
const volumeOpacity = volumeActor.getProperty().getScalarOpacity(0);
|
||||
const nodeValue = [];
|
||||
|
||||
volumeOpacity.getNodeValue(nodeIndex, nodeValue);
|
||||
|
||||
return nodeValue[1];
|
||||
};
|
||||
|
||||
/**
|
||||
* Checks if the opacity applied to the PET volume is something like
|
||||
* [{x: 0, y: 0}, {x: 0.1, y: [C]}, {x: [ANY], y: [C]}] where C is a
|
||||
* constant opacity value for all x's greater than 0.1
|
||||
*/
|
||||
const isPetVolumeWithDefaultOpacity = (volumeId, volumeActor) => {
|
||||
const volume = cs3DCache.getVolume(volumeId);
|
||||
|
||||
if (!volume) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const modality = volume.metadata.Modality;
|
||||
|
||||
if (modality !== 'PT') {
|
||||
return false;
|
||||
}
|
||||
|
||||
const volumeOpacity = volumeActor.getProperty().getScalarOpacity(0);
|
||||
|
||||
// It must have at least two points (0 and 0.1)
|
||||
if (volumeOpacity.getSize() < 2) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const node1Value = [];
|
||||
const node2Value = [];
|
||||
|
||||
volumeOpacity.getNodeValue(0, node1Value);
|
||||
volumeOpacity.getNodeValue(1, node2Value);
|
||||
|
||||
// First node must be (x:0, y:0} and the second one {x:0.1, y:any}
|
||||
if (node1Value[0] !== 0 || node1Value[1] !== 0 || node2Value[0] !== 0.1) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const expectedOpacity = node2Value[1];
|
||||
const opacitySize = volumeOpacity.getSize();
|
||||
const currentNodeValue = [];
|
||||
|
||||
// Any point after 0.1 must have the same opacity
|
||||
for (let i = 2; i < opacitySize; i++) {
|
||||
volumeOpacity.getNodeValue(i, currentNodeValue);
|
||||
|
||||
if (currentNodeValue[1] !== expectedOpacity) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
};
|
||||
|
||||
/**
|
||||
* Checks if the opacity function has a constance opacity value for all x's
|
||||
*/
|
||||
const isVolumeWithConstantOpacity = volumeActor => {
|
||||
const volumeOpacity = volumeActor.getProperty().getScalarOpacity(0);
|
||||
const opacitySize = volumeOpacity.getSize();
|
||||
const firstNodeValue = [];
|
||||
|
||||
volumeOpacity.getNodeValue(0, firstNodeValue);
|
||||
|
||||
const firstNodeOpacity = firstNodeValue[1];
|
||||
|
||||
for (let i = 0; i < opacitySize; i++) {
|
||||
const currentNodeValue = [];
|
||||
|
||||
volumeOpacity.getNodeValue(0, currentNodeValue);
|
||||
|
||||
if (currentNodeValue[1] !== firstNodeOpacity) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
};
|
||||
|
||||
const getVolumeOpacity = useCallback((viewport, volumeId) => {
|
||||
const volumeActor = viewport.getActor(volumeId).actor;
|
||||
|
||||
if (isPetVolumeWithDefaultOpacity(volumeId, volumeActor)) {
|
||||
// Get the opacity from the second node at 0.1
|
||||
return getNodeOpacity(volumeActor, 1);
|
||||
} else if (isVolumeWithConstantOpacity(volumeActor)) {
|
||||
return getNodeOpacity(volumeActor, 0);
|
||||
}
|
||||
|
||||
return undefined;
|
||||
}, []);
|
||||
|
||||
const getWindowLevelsData = useCallback(
|
||||
async (viewportId: number) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!viewport) {
|
||||
return [];
|
||||
}
|
||||
|
||||
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
|
||||
|
||||
const volumeIds = viewport.getActors().map(actor => actor.uid);
|
||||
const viewportProperties = viewport.getProperties();
|
||||
const { voiRange } = viewportProperties;
|
||||
const viewportVoi = voiRange
|
||||
? {
|
||||
windowWidth: voiRange.upper - voiRange.lower,
|
||||
windowCenter: voiRange.lower + (voiRange.upper - voiRange.lower) / 2,
|
||||
}
|
||||
: undefined;
|
||||
|
||||
const windowLevels = await Promise.all(
|
||||
volumeIds.map(async (volumeId, volumeIndex) => {
|
||||
const volume = cs3DCache.getVolume(volumeId);
|
||||
|
||||
if (!volume) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const opacity = getVolumeOpacity(viewport, volumeId);
|
||||
const { metadata, scaling } = volume;
|
||||
const modality = metadata.Modality;
|
||||
|
||||
// TODO: find a proper way to fix the histogram
|
||||
const options = {
|
||||
min: modality === 'PT' ? 0.1 : -999,
|
||||
max: modality === 'PT' ? 5 : 10000,
|
||||
};
|
||||
|
||||
const histogram =
|
||||
cachedHistograms[volumeId] ??
|
||||
(await getViewportVolumeHistogram(viewport, volume, options));
|
||||
const { voi: displaySetVOI, colormap: displaySetColormap } =
|
||||
viewportInfo.displaySetOptions[volumeIndex];
|
||||
let colormap;
|
||||
if (displaySetColormap) {
|
||||
colormap =
|
||||
csUtils.colormap.getColormap(displaySetColormap.name) ??
|
||||
vtkColorMaps.getPresetByName(displaySetColormap.name);
|
||||
}
|
||||
|
||||
const voi = !volumeIndex ? viewportVoi ?? displaySetVOI : displaySetVOI;
|
||||
|
||||
return {
|
||||
viewportId,
|
||||
modality,
|
||||
volumeId,
|
||||
volumeIndex,
|
||||
voi,
|
||||
histogram,
|
||||
colormap,
|
||||
step: scaling?.PT ? 0.05 : 1,
|
||||
opacity,
|
||||
showOpacitySlider: volumeIndex === 1 && opacity !== undefined,
|
||||
};
|
||||
})
|
||||
);
|
||||
|
||||
const data = windowLevels.filter(Boolean);
|
||||
return data;
|
||||
},
|
||||
|
||||
[cachedHistograms, cornerstoneViewportService, getVolumeOpacity]
|
||||
);
|
||||
|
||||
const updateViewportHistograms = useCallback(() => {
|
||||
getWindowLevelsData(viewportId).then(windowLevels => {
|
||||
setWindowLevels(windowLevels);
|
||||
});
|
||||
}, [viewportId, getWindowLevelsData]);
|
||||
|
||||
const handleCornerstoneVOIModified = useCallback(
|
||||
e => {
|
||||
const { detail } = e;
|
||||
const { volumeId, range } = detail;
|
||||
const oldWindowLevel = windowLevels.find(wl => wl.volumeId === volumeId);
|
||||
|
||||
if (!oldWindowLevel) {
|
||||
return;
|
||||
}
|
||||
|
||||
const oldVOI = oldWindowLevel.voi;
|
||||
const windowWidth = range.upper - range.lower;
|
||||
const windowCenter = range.lower + windowWidth / 2;
|
||||
|
||||
if (windowWidth === oldVOI.windowWidth && windowCenter === oldVOI.windowCenter) {
|
||||
return;
|
||||
}
|
||||
|
||||
const newWindowLevel = {
|
||||
...oldWindowLevel,
|
||||
voi: {
|
||||
windowWidth,
|
||||
windowCenter,
|
||||
},
|
||||
};
|
||||
|
||||
setWindowLevels(
|
||||
windowLevels.map(windowLevel =>
|
||||
windowLevel === oldWindowLevel ? newWindowLevel : windowLevel
|
||||
)
|
||||
);
|
||||
},
|
||||
[windowLevels]
|
||||
);
|
||||
|
||||
const debouncedHandleCornerstoneVOIModified = useCallback(
|
||||
debounce(handleCornerstoneVOIModified, 100),
|
||||
[handleCornerstoneVOIModified]
|
||||
);
|
||||
|
||||
const handleVOIChange = useCallback(
|
||||
(volumeId, voi) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
const newRange = {
|
||||
lower: voi.windowCenter - voi.windowWidth / 2,
|
||||
upper: voi.windowCenter + voi.windowWidth / 2,
|
||||
};
|
||||
|
||||
viewport.setProperties({ voiRange: newRange }, volumeId);
|
||||
viewport.render();
|
||||
},
|
||||
[cornerstoneViewportService, viewportId]
|
||||
);
|
||||
|
||||
const handleOpacityChange = useCallback(
|
||||
(viewportId, _volumeIndex, volumeId, opacity) => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!viewport) {
|
||||
return;
|
||||
}
|
||||
|
||||
const viewportVolumeIds = viewport.getActors().map(actor => actor.uid);
|
||||
const viewports = getViewportsWithVolumeIds(viewportVolumeIds);
|
||||
|
||||
viewports.forEach(vp => {
|
||||
vp.setProperties({ colormap: { opacity } }, volumeId);
|
||||
vp.render();
|
||||
});
|
||||
},
|
||||
[getViewportsWithVolumeIds, cornerstoneViewportService]
|
||||
);
|
||||
|
||||
// Listen to windowLevels changes and caches all the new ones
|
||||
useEffect(() => {
|
||||
const newVolumeHistograms = windowLevels
|
||||
.filter(windowLevel => !cachedHistograms[windowLevel.volumeId] && windowLevel.histogram)
|
||||
.reduce((volumeHistograms, windowLevel) => {
|
||||
// If the histogram exists, add it to the volumeHistograms object
|
||||
if (windowLevel?.histogram) {
|
||||
volumeHistograms[windowLevel.volumeId] = windowLevel.histogram;
|
||||
}
|
||||
return volumeHistograms;
|
||||
}, {});
|
||||
|
||||
if (Object.keys(newVolumeHistograms).length) {
|
||||
setCachedHistograms(prev => ({ ...prev, ...newVolumeHistograms }));
|
||||
}
|
||||
}, [windowLevels, cachedHistograms]);
|
||||
|
||||
// Updates the histogram when the viewport index prop has changed
|
||||
useEffect(() => updateViewportHistograms(), [viewportId, updateViewportHistograms]);
|
||||
|
||||
// Listen to cornerstone events on "eventTarget" and at the document level
|
||||
useEffect(() => {
|
||||
eventTarget.addEventListener(Events.IMAGE_VOLUME_LOADING_COMPLETED, updateViewportHistograms);
|
||||
|
||||
document.addEventListener(Events.VOI_MODIFIED, debouncedHandleCornerstoneVOIModified, true);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(
|
||||
Events.IMAGE_VOLUME_LOADING_COMPLETED,
|
||||
updateViewportHistograms
|
||||
);
|
||||
|
||||
document.removeEventListener(
|
||||
Events.VOI_MODIFIED,
|
||||
debouncedHandleCornerstoneVOIModified,
|
||||
true
|
||||
);
|
||||
};
|
||||
}, [updateViewportHistograms, debouncedHandleCornerstoneVOIModified]);
|
||||
|
||||
// Updates the viewport when the context of the viewport has changed. This is
|
||||
// necessary when moving across different stages because the viewport index
|
||||
// may not change but the volumes loaded on it may change.
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = cornerstoneViewportService.subscribe(
|
||||
cornerstoneViewportService.EVENTS.VIEWPORT_VOLUMES_CHANGED,
|
||||
({ viewportInfo }) => {
|
||||
if (viewportInfo.viewportId === viewportId) {
|
||||
updateViewportHistograms();
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [viewportId, cornerstoneViewportService, updateViewportHistograms]);
|
||||
|
||||
return (
|
||||
<PanelSection title="Window Level">
|
||||
{windowLevels.map((windowLevel, i) => {
|
||||
if (!windowLevel.histogram) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<WindowLevel
|
||||
key={windowLevel.volumeId}
|
||||
title={`${windowLevel.modality}`}
|
||||
histogram={windowLevel.histogram}
|
||||
voi={windowLevel.voi}
|
||||
step={windowLevel.step}
|
||||
showOpacitySlider={windowLevel.showOpacitySlider}
|
||||
colormap={windowLevel.colormap}
|
||||
onVOIChange={voi => handleVOIChange(windowLevel.volumeId, voi)}
|
||||
opacity={windowLevel.opacity}
|
||||
onOpacityChange={opacity =>
|
||||
handleOpacityChange(windowLevel.viewportId, i, windowLevel.volumeId, opacity)
|
||||
}
|
||||
/>
|
||||
);
|
||||
})}
|
||||
</PanelSection>
|
||||
);
|
||||
};
|
||||
|
||||
ViewportWindowLevel.propTypes = {
|
||||
servicesManager: PropTypes.object.isRequired,
|
||||
viewportId: PropTypes.string.isRequired,
|
||||
};
|
||||
|
||||
export default ViewportWindowLevel;
|
||||
+72
@@ -0,0 +1,72 @@
|
||||
import { getWebWorkerManager } from '@cornerstonejs/core';
|
||||
|
||||
const workerManager = getWebWorkerManager();
|
||||
|
||||
const WorkerOptions = {
|
||||
maxWorkerInstances: 1,
|
||||
autoTerminateOnIdle: {
|
||||
enabled: true,
|
||||
idleTimeThreshold: 1000,
|
||||
},
|
||||
};
|
||||
|
||||
// Register the task
|
||||
const workerFn = () => {
|
||||
return new Worker(new URL('./histogramWorker.js', import.meta.url), {
|
||||
name: 'histogram-worker', // name used by the browser to name the worker
|
||||
});
|
||||
};
|
||||
|
||||
const getViewportVolumeHistogram = async (viewport, volume, options?) => {
|
||||
workerManager.registerWorker('histogram-worker', workerFn, WorkerOptions);
|
||||
|
||||
if (!volume?.loadStatus.loaded) {
|
||||
return undefined;
|
||||
}
|
||||
|
||||
const volumeImageData = viewport.getImageData(volume.volumeId);
|
||||
|
||||
if (!volumeImageData) {
|
||||
return undefined;
|
||||
}
|
||||
|
||||
let scalarData = volume.scalarData;
|
||||
|
||||
let prevTimePoint;
|
||||
if (volume.numTimePoints > 1) {
|
||||
prevTimePoint = volume.timePointIndex;
|
||||
const middleTimePoint = Math.round(volume.numTimePoints / 2);
|
||||
volume.timePointIndex = middleTimePoint;
|
||||
scalarData = volume.getScalarData(middleTimePoint);
|
||||
}
|
||||
|
||||
const { dimensions, origin, direction, spacing } = volume;
|
||||
|
||||
const range = await workerManager.executeTask('histogram-worker', 'getRange', {
|
||||
dimensions,
|
||||
origin,
|
||||
direction,
|
||||
spacing,
|
||||
scalarData,
|
||||
});
|
||||
|
||||
// after we calculate the range let's reset the timePointIndex
|
||||
if (volume.numTimePoints > 1) {
|
||||
volume.timePointIndex = prevTimePoint;
|
||||
}
|
||||
const { minimum: min, maximum: max } = range;
|
||||
const calcHistOptions = {
|
||||
numBins: 256,
|
||||
min: Math.max(min, options?.min ?? min),
|
||||
max: Math.min(max, options?.max ?? max),
|
||||
};
|
||||
|
||||
const histogram = await workerManager.executeTask('histogram-worker', 'calcHistogram', {
|
||||
data: scalarData,
|
||||
options: calcHistOptions,
|
||||
});
|
||||
|
||||
return histogram;
|
||||
};
|
||||
|
||||
export { getViewportVolumeHistogram };
|
||||
@@ -0,0 +1,97 @@
|
||||
import { expose } from 'comlink';
|
||||
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
||||
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
|
||||
|
||||
/**
|
||||
* This object simulates a heavy task by implementing a sleep function and a recursive Fibonacci function.
|
||||
* It's used for testing or demonstrating purposes where a heavy or time-consuming task is needed.
|
||||
*/
|
||||
const obj = {
|
||||
getRange: ({ dimensions, origin, direction, spacing, scalarData }) => {
|
||||
const imageData = vtkImageData.newInstance();
|
||||
imageData.setDimensions(dimensions);
|
||||
imageData.setOrigin(origin);
|
||||
imageData.setDirection(direction);
|
||||
imageData.setSpacing(spacing);
|
||||
|
||||
const scalarArray = vtkDataArray.newInstance({
|
||||
name: 'Pixels',
|
||||
numberOfComponents: 1,
|
||||
values: scalarData,
|
||||
});
|
||||
|
||||
imageData.getPointData().setScalars(scalarArray);
|
||||
|
||||
imageData.modified();
|
||||
|
||||
const range = imageData.computeHistogram(imageData.getBounds());
|
||||
|
||||
return range;
|
||||
},
|
||||
calcHistogram: ({ data, options }) => {
|
||||
if (options === undefined) {
|
||||
options = {};
|
||||
}
|
||||
const histogram = {
|
||||
numBins: options.numBins || 256,
|
||||
range: { min: 0, max: 0 },
|
||||
bins: new Int32Array(1),
|
||||
maxBin: 0,
|
||||
maxBinValue: 0,
|
||||
};
|
||||
|
||||
let minToUse = options.min;
|
||||
let maxToUse = options.max;
|
||||
|
||||
if (minToUse === undefined || maxToUse === undefined) {
|
||||
let min = Infinity;
|
||||
let max = -Infinity;
|
||||
let index = data.length;
|
||||
|
||||
while (index--) {
|
||||
const value = data[index];
|
||||
if (value < min) {
|
||||
min = value;
|
||||
}
|
||||
if (value > max) {
|
||||
max = value;
|
||||
}
|
||||
}
|
||||
|
||||
minToUse = min;
|
||||
maxToUse = max;
|
||||
}
|
||||
|
||||
histogram.range = { min: minToUse, max: maxToUse };
|
||||
|
||||
const bins = new Int32Array(histogram.numBins);
|
||||
const binScale = histogram.numBins / (maxToUse - minToUse);
|
||||
|
||||
for (let index = 0; index < data.length; index++) {
|
||||
const value = data[index];
|
||||
if (value < minToUse) {
|
||||
continue;
|
||||
}
|
||||
if (value > maxToUse) {
|
||||
continue;
|
||||
}
|
||||
const bin = Math.floor((value - minToUse) * binScale);
|
||||
bins[bin] += 1;
|
||||
}
|
||||
|
||||
histogram.bins = bins;
|
||||
histogram.maxBin = 0;
|
||||
histogram.maxBinValue = 0;
|
||||
|
||||
for (let bin = 0; bin < histogram.numBins; bin++) {
|
||||
if (histogram.bins[bin] > histogram.maxBinValue) {
|
||||
histogram.maxBin = bin;
|
||||
histogram.maxBinValue = histogram.bins[bin];
|
||||
}
|
||||
}
|
||||
|
||||
return histogram;
|
||||
},
|
||||
};
|
||||
|
||||
expose(obj);
|
||||
@@ -0,0 +1 @@
|
||||
export { default } from './ViewportWindowLevel';
|
||||
@@ -0,0 +1,115 @@
|
||||
import React, { ReactElement, useCallback, useEffect, useState } from 'react';
|
||||
import { SwitchButton } from '@ohif/ui';
|
||||
import { StackViewport, VolumeViewport } from '@cornerstonejs/core';
|
||||
import { ColorbarProps } from '../../types/Colorbar';
|
||||
import { utilities } from '@cornerstonejs/core';
|
||||
|
||||
export function setViewportColorbar(
|
||||
viewportId,
|
||||
displaySets,
|
||||
commandsManager,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
colorbarOptions
|
||||
) {
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
|
||||
const backgroundColor = viewportInfo.getViewportOptions().background;
|
||||
const isLight = backgroundColor ? utilities.isEqual(backgroundColor, [1, 1, 1]) : false;
|
||||
|
||||
if (isLight) {
|
||||
colorbarOptions.ticks = {
|
||||
position: 'left',
|
||||
style: {
|
||||
font: '12px Arial',
|
||||
color: '#000000',
|
||||
maxNumTicks: 8,
|
||||
tickSize: 5,
|
||||
tickWidth: 1,
|
||||
labelMargin: 3,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
const displaySetInstanceUIDs = [];
|
||||
|
||||
if (viewport instanceof StackViewport) {
|
||||
displaySetInstanceUIDs.push(viewportId);
|
||||
}
|
||||
|
||||
if (viewport instanceof VolumeViewport) {
|
||||
displaySets.forEach(ds => {
|
||||
displaySetInstanceUIDs.push(ds.displaySetInstanceUID);
|
||||
});
|
||||
}
|
||||
|
||||
commandsManager.run({
|
||||
commandName: 'toggleViewportColorbar',
|
||||
commandOptions: {
|
||||
viewportId,
|
||||
options: colorbarOptions,
|
||||
displaySetInstanceUIDs,
|
||||
},
|
||||
context: 'CORNERSTONE',
|
||||
});
|
||||
}
|
||||
|
||||
export function Colorbar({
|
||||
viewportId,
|
||||
displaySets,
|
||||
commandsManager,
|
||||
servicesManager,
|
||||
colorbarProperties,
|
||||
}: withAppTypes<ColorbarProps>): ReactElement {
|
||||
const { colorbarService } = servicesManager.services;
|
||||
const {
|
||||
width: colorbarWidth,
|
||||
colorbarTickPosition,
|
||||
colorbarContainerPosition,
|
||||
colormaps,
|
||||
colorbarInitialColormap,
|
||||
} = colorbarProperties;
|
||||
const [showColorbar, setShowColorbar] = useState(colorbarService.hasColorbar(viewportId));
|
||||
|
||||
const onSetColorbar = useCallback(() => {
|
||||
setViewportColorbar(viewportId, displaySets, commandsManager, servicesManager, {
|
||||
viewportId,
|
||||
colormaps,
|
||||
ticks: {
|
||||
position: colorbarTickPosition,
|
||||
},
|
||||
width: colorbarWidth,
|
||||
position: colorbarContainerPosition,
|
||||
activeColormapName: colorbarInitialColormap,
|
||||
});
|
||||
}, [commandsManager]);
|
||||
|
||||
useEffect(() => {
|
||||
const updateColorbarState = () => {
|
||||
setShowColorbar(colorbarService.hasColorbar(viewportId));
|
||||
};
|
||||
|
||||
const { unsubscribe } = colorbarService.subscribe(
|
||||
colorbarService.EVENTS.STATE_CHANGED,
|
||||
updateColorbarState
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [viewportId]);
|
||||
|
||||
return (
|
||||
<div className="all-in-one-menu-item flex w-full justify-center">
|
||||
<div className="mr-2 w-[28px]"></div>
|
||||
<SwitchButton
|
||||
label="Display Color bar"
|
||||
checked={showColorbar}
|
||||
onChange={() => {
|
||||
onSetColorbar();
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
@@ -0,0 +1,158 @@
|
||||
import React, { ReactElement, useCallback, useEffect, useRef, useState, useMemo } from 'react';
|
||||
import { AllInOneMenu, ButtonGroup, SwitchButton } from '@ohif/ui';
|
||||
import { StackViewport } from '@cornerstonejs/core';
|
||||
import { ColormapProps } from '../../types/Colormap';
|
||||
|
||||
export function Colormap({
|
||||
colormaps,
|
||||
viewportId,
|
||||
displaySets,
|
||||
commandsManager,
|
||||
servicesManager,
|
||||
}: ColormapProps): ReactElement {
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
const [activeDisplaySet, setActiveDisplaySet] = useState(displaySets[0]);
|
||||
|
||||
const [showPreview, setShowPreview] = useState(false);
|
||||
const [prePreviewColormap, setPrePreviewColormap] = useState(null);
|
||||
|
||||
const showPreviewRef = useRef(showPreview);
|
||||
showPreviewRef.current = showPreview;
|
||||
const prePreviewColormapRef = useRef(prePreviewColormap);
|
||||
prePreviewColormapRef.current = prePreviewColormap;
|
||||
const activeDisplaySetRef = useRef(activeDisplaySet);
|
||||
activeDisplaySetRef.current = activeDisplaySet;
|
||||
|
||||
const onSetColorLUT = useCallback(
|
||||
props => {
|
||||
// TODO: Better way to check if it's a fusion
|
||||
const oneOpacityColormaps = ['Grayscale', 'X Ray'];
|
||||
const opacity =
|
||||
displaySets.length > 1 && !oneOpacityColormaps.includes(props.colormap.name) ? 0.5 : 1;
|
||||
commandsManager.run({
|
||||
commandName: 'setViewportColormap',
|
||||
commandOptions: {
|
||||
...props,
|
||||
opacity,
|
||||
immediate: true,
|
||||
},
|
||||
context: 'CORNERSTONE',
|
||||
});
|
||||
},
|
||||
[commandsManager]
|
||||
);
|
||||
|
||||
const getViewportColormap = (viewportId, displaySet) => {
|
||||
const { displaySetInstanceUID } = displaySet;
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
if (viewport instanceof StackViewport) {
|
||||
const { colormap } = viewport.getProperties();
|
||||
if (!colormap) {
|
||||
return colormaps.find(c => c.Name === 'Grayscale') || colormaps[0];
|
||||
}
|
||||
return colormap;
|
||||
}
|
||||
const actorEntries = viewport.getActors();
|
||||
const actorEntry = actorEntries.find(entry => entry.uid.includes(displaySetInstanceUID));
|
||||
const { colormap } = viewport.getProperties(actorEntry.uid);
|
||||
if (!colormap) {
|
||||
return colormaps.find(c => c.Name === 'Grayscale') || colormaps[0];
|
||||
}
|
||||
return colormap;
|
||||
};
|
||||
|
||||
const buttons = useMemo(() => {
|
||||
return displaySets.map((displaySet, index) => ({
|
||||
children: displaySet.Modality,
|
||||
key: index,
|
||||
style: {
|
||||
minWidth: `calc(100% / ${displaySets.length})`,
|
||||
fontSize: '0.8rem',
|
||||
textAlign: 'center',
|
||||
display: 'flex',
|
||||
justifyContent: 'center',
|
||||
alignItems: 'center',
|
||||
},
|
||||
}));
|
||||
}, [displaySets]);
|
||||
|
||||
useEffect(() => {
|
||||
setActiveDisplaySet(displaySets[displaySets.length - 1]);
|
||||
}, [displaySets]);
|
||||
|
||||
return (
|
||||
<>
|
||||
{buttons.length > 1 && (
|
||||
<div className="all-in-one-menu-item flex w-full justify-center">
|
||||
<ButtonGroup
|
||||
onActiveIndexChange={index => {
|
||||
setActiveDisplaySet(displaySets[index]);
|
||||
setPrePreviewColormap(null);
|
||||
}}
|
||||
activeIndex={
|
||||
displaySets.findIndex(
|
||||
ds => ds.displaySetInstanceUID === activeDisplaySetRef.current.displaySetInstanceUID
|
||||
) || 1
|
||||
}
|
||||
className="w-[70%] text-[10px]"
|
||||
>
|
||||
{buttons.map(({ children, key, style }) => (
|
||||
<div
|
||||
key={key}
|
||||
style={style}
|
||||
>
|
||||
{children}
|
||||
</div>
|
||||
))}
|
||||
</ButtonGroup>
|
||||
</div>
|
||||
)}
|
||||
<div className="all-in-one-menu-item flex w-full justify-center">
|
||||
<SwitchButton
|
||||
label="Preview in viewport"
|
||||
checked={showPreview}
|
||||
onChange={checked => {
|
||||
setShowPreview(checked);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
<AllInOneMenu.DividerItem />
|
||||
<AllInOneMenu.ItemPanel>
|
||||
{colormaps.map((colormap, index) => (
|
||||
<AllInOneMenu.Item
|
||||
key={index}
|
||||
label={colormap.description}
|
||||
onClick={() => {
|
||||
onSetColorLUT({
|
||||
viewportId,
|
||||
colormap,
|
||||
displaySetInstanceUID: activeDisplaySetRef.current.displaySetInstanceUID,
|
||||
});
|
||||
setPrePreviewColormap(null);
|
||||
}}
|
||||
onMouseEnter={() => {
|
||||
if (showPreviewRef.current) {
|
||||
setPrePreviewColormap(getViewportColormap(viewportId, activeDisplaySetRef.current));
|
||||
onSetColorLUT({
|
||||
viewportId,
|
||||
colormap,
|
||||
displaySetInstanceUID: activeDisplaySetRef.current.displaySetInstanceUID,
|
||||
});
|
||||
}
|
||||
}}
|
||||
onMouseLeave={() => {
|
||||
if (showPreviewRef.current && prePreviewColormapRef.current) {
|
||||
onSetColorLUT({
|
||||
viewportId,
|
||||
colormap: prePreviewColormapRef.current,
|
||||
displaySetInstanceUID: activeDisplaySetRef.current.displaySetInstanceUID,
|
||||
});
|
||||
}
|
||||
}}
|
||||
></AllInOneMenu.Item>
|
||||
))}
|
||||
</AllInOneMenu.ItemPanel>
|
||||
</>
|
||||
);
|
||||
}
|
||||
@@ -0,0 +1,130 @@
|
||||
import React, { ReactElement, useState, useEffect, useCallback } from 'react';
|
||||
import { VolumeLightingProps } from '../../types/ViewportPresets';
|
||||
|
||||
export function VolumeLighting({
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
viewportId,
|
||||
}: VolumeLightingProps): ReactElement {
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
const [ambient, setAmbient] = useState(null);
|
||||
const [diffuse, setDiffuse] = useState(null);
|
||||
const [specular, setSpecular] = useState(null);
|
||||
|
||||
const onAmbientChange = useCallback(() => {
|
||||
commandsManager.runCommand('setVolumeLighting', { viewportId, options: { ambient } });
|
||||
}, [ambient, commandsManager, viewportId]);
|
||||
|
||||
const onDiffuseChange = useCallback(() => {
|
||||
commandsManager.runCommand('setVolumeLighting', { viewportId, options: { diffuse } });
|
||||
}, [diffuse, commandsManager, viewportId]);
|
||||
|
||||
const onSpecularChange = useCallback(() => {
|
||||
commandsManager.runCommand('setVolumeLighting', { viewportId, options: { specular } });
|
||||
}, [specular, commandsManager, viewportId]);
|
||||
|
||||
const calculateBackground = value => {
|
||||
const percentage = ((value - 0) / (1 - 0)) * 100;
|
||||
return `linear-gradient(to right, #5acce6 0%, #5acce6 ${percentage}%, #3a3f99 ${percentage}%, #3a3f99 100%)`;
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const { actor } = viewport.getActors()[0];
|
||||
const ambient = actor.getProperty().getAmbient();
|
||||
const diffuse = actor.getProperty().getDiffuse();
|
||||
const specular = actor.getProperty().getSpecular();
|
||||
setAmbient(ambient);
|
||||
setDiffuse(diffuse);
|
||||
setSpecular(specular);
|
||||
}, [viewportId, cornerstoneViewportService]);
|
||||
return (
|
||||
<>
|
||||
<div className="all-in-one-menu-item flex w-full flex-row !items-center justify-between gap-[10px]">
|
||||
<label
|
||||
className="block text-white"
|
||||
htmlFor="ambient"
|
||||
>
|
||||
Ambient
|
||||
</label>
|
||||
{ambient !== null && (
|
||||
<input
|
||||
className="bg-inputfield-main h-2 w-[120px] cursor-pointer appearance-none rounded-lg"
|
||||
value={ambient}
|
||||
onChange={e => {
|
||||
setAmbient(e.target.value);
|
||||
onAmbientChange();
|
||||
}}
|
||||
id="ambient"
|
||||
max={1}
|
||||
min={0}
|
||||
type="range"
|
||||
step={0.1}
|
||||
style={{
|
||||
background: calculateBackground(ambient),
|
||||
'--thumb-inner-color': '#5acce6',
|
||||
'--thumb-outer-color': '#090c29',
|
||||
}}
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
<div className="all-in-one-menu-item flex w-full flex-row !items-center justify-between gap-[10px]">
|
||||
<label
|
||||
className="block text-white"
|
||||
htmlFor="diffuse"
|
||||
>
|
||||
Diffuse
|
||||
</label>
|
||||
{diffuse !== null && (
|
||||
<input
|
||||
className="bg-inputfield-main h-2 w-[120px] cursor-pointer appearance-none rounded-lg"
|
||||
value={diffuse}
|
||||
onChange={e => {
|
||||
setDiffuse(e.target.value);
|
||||
onDiffuseChange();
|
||||
}}
|
||||
id="diffuse"
|
||||
max={1}
|
||||
min={0}
|
||||
type="range"
|
||||
step={0.1}
|
||||
style={{
|
||||
background: calculateBackground(diffuse),
|
||||
'--thumb-inner-color': '#5acce6',
|
||||
'--thumb-outer-color': '#090c29',
|
||||
}}
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
|
||||
<div className="all-in-one-menu-item flex w-full flex-row !items-center justify-between gap-[10px]">
|
||||
<label
|
||||
className="block text-white"
|
||||
htmlFor="specular"
|
||||
>
|
||||
Specular
|
||||
</label>
|
||||
{specular !== null && (
|
||||
<input
|
||||
className="bg-inputfield-main h-2 w-[120px] cursor-pointer appearance-none rounded-lg"
|
||||
value={specular}
|
||||
onChange={e => {
|
||||
setSpecular(e.target.value);
|
||||
onSpecularChange();
|
||||
}}
|
||||
id="specular"
|
||||
max={1}
|
||||
min={0}
|
||||
type="range"
|
||||
step={0.1}
|
||||
style={{
|
||||
background: calculateBackground(specular),
|
||||
'--thumb-inner-color': '#5acce6',
|
||||
'--thumb-outer-color': '#090c29',
|
||||
}}
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
}
|
||||
+46
@@ -0,0 +1,46 @@
|
||||
import React, { ReactElement } from 'react';
|
||||
import { AllInOneMenu } from '@ohif/ui';
|
||||
import { VolumeRenderingOptionsProps } from '../../types/ViewportPresets';
|
||||
import { VolumeRenderingQuality } from './VolumeRenderingQuality';
|
||||
import { VolumeShift } from './VolumeShift';
|
||||
import { VolumeLighting } from './VolumeLighting';
|
||||
import { VolumeShade } from './VolumeShade';
|
||||
export function VolumeRenderingOptions({
|
||||
viewportId,
|
||||
commandsManager,
|
||||
volumeRenderingQualityRange,
|
||||
servicesManager,
|
||||
}: VolumeRenderingOptionsProps): ReactElement {
|
||||
return (
|
||||
<AllInOneMenu.ItemPanel>
|
||||
<VolumeRenderingQuality
|
||||
viewportId={viewportId}
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
volumeRenderingQualityRange={volumeRenderingQualityRange}
|
||||
/>
|
||||
|
||||
<VolumeShift
|
||||
viewportId={viewportId}
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
/>
|
||||
<div className="all-in-one-menu-item mt-2 flex !h-[20px] w-full justify-start">
|
||||
<div className="text-aqua-pale text-[13px]">LIGHTING</div>
|
||||
</div>
|
||||
<div className="bg-primary-dark mt-1 mb-1 h-[2px] w-full"></div>
|
||||
<div className="all-in-one-menu-item flex w-full justify-center">
|
||||
<VolumeShade
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
viewportId={viewportId}
|
||||
/>
|
||||
</div>
|
||||
<VolumeLighting
|
||||
viewportId={viewportId}
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
/>
|
||||
</AllInOneMenu.ItemPanel>
|
||||
);
|
||||
}
|
||||
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