* feat(custom displayOptions): add custom options to every level of hanging protocols
* move set preset down to cornerstone3d
* works
* fix tmtv based on new api
* fix unit test
* close
* review1
* upgrade packages
* update packages
* apply review comments
* recursive call
* less copy
* apply review comments
* fix e2e tests
* apply review comments
* revert
* apply review comments
* apply review comments
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix: multiframe
* fix the unnecessary use of prior since some servers dont like it
* add authentication via token in url
* add data citation
* add resources
* upgrade packages
* yarn lock
* apply review comments
* fix: The display of linked viewports during drag and drop has a race
* PR review comments
* fix: Segmentation display two up
* Removing console logs
* Fix the blank viewport can have stuff added to it
* Fix the null name on HP module
* Fix the navigate to initial image
* Fix the nth interleave loader
* Fix the unit tests
* PR comments - docs mostly
* fix: Exception thrown on change displayset after double click
* feat: Add state sync and use it to remember viewport grid info
fix: Version updates
Fixes for toggling MPR mode
Fix the display when the interleaved load module fails
Fix the memory of the state to restore correctly
PR fixes for the state sync service
PR fixes
PR fixes
PR fixes
Added a hack warning to remove volumeDeactivate
Fixes for TMTV colormap setting
Fix the casing
Missed renames
fix: tests not running due to variance in ordering
Reverting some fixes to change case
PR changes - mostly comments and minor improvements
fix: All display sets were being updated on drag and drop
PR fixes - mostly renames
PR fixes
Test support for OHIF, for HP branch
test: Add at least a minimal set of automated tests for hanging protocols
Docs
PR fixes
Merge fixes
DOCS updates
Add an example of the mn hanging protocol
PR fixes
PR fixes
PR fixes
* Fix the drag and drop
PR fixes
* PR changes - update default keys for next/previous stage
* fix: Was storing the custom viewport grid too aggressively
Caused by a PR change misspelling a variable
* Add CT volume in PET ROI Thresholding (#3053)
* Add CT volume in PET ROI Thresholding
* Change UI ROI Threshold config
* Refactoring ROI Threshold configuration Panel
* fix menus
* try to fix build preview
* try to fix build preview
---------
Co-authored-by: rodrigobasilio2022 <114958722+rodrigobasilio2022@users.noreply.github.com>
* feat: add initial sop class handler for SEG
* feat: move segmentation service
* update segmentation service methods
* fix: viewport data structure
* feat: Add initial render for the DICOM SEG for each displaySet
* fix: various wrong architectural dependencies between services
* feat: initial separate SEG display in each viewport
* feat: refactore viewport action bar
* initial work for SEG hydration
* fix: various bugs regarding drag and dropping different viewports
* fix: rendering issues for multiple seg displaysets
* fix: bugs for thumbnail and hydration
* feat: fix the initial segment color
* update after rebase
* feat: initial design for the segmentation group table
* feat: initial new design for the segmentation panel
* feat: segmentation panel
* feat: make segmentation appear on all related viewports
* fix: segmentation load bug based on functional groups
* initial work for segmentation crosshairs
* fix: various stylings and functionality
* fix: various stylings for the seg panel
* fix: overflow styles
* feat: add more ui components
* feat: added segmentation config
* feat: add jump to segment
* feat: add jump to segment for DICOM SEG viewport
* fix: bugs after rebase
* feat: jump in segmentation viewport
* fix: mpr support for seg
* feat: add more icons
* feat: new icons
* feat: add new side panel
* feat: add segmentation config
* feat: add loading indicator to ohif
* feat: make hanging protocols follow matching rules for viewports
* feat: enhance drag and drop to be hanging protocol aware
* fix: mpr restore previous layout
* fix: crosshairs toggle
* fix: add auth headers to the dicom loader via dicomwebclient
* fix: bug for crosshairs toggle in mpr
* fix: seg viewport reusing old toolGroup
* feat: add loading animation with lottie
* fix: various bugs for Segmentation hydration in mpr
* feat: change outline alpha to outline opacity
* feat: loading indicator for seg viewport
* fix: various segmentation group styles
* fix: local mode for seg
* feat: add animation for the highlight
* fix: loading indicatro to show segment indices
* feat: enhance modality drop down ui
* fix: panels
* fix: download form
* fix: layout shift in loading indicator
* fix: loading indicator to have correct values
* fix: update software number
* fix: image jump between MPR and default
* fix: segmentation cleanup and cine service cleanup
* fix: segmentation toolgroup clena up
* fix: highlight interval should not trigger again
* fix: issue with multiframe sorting
* rename: change onSeriesChange to onArrowsClick
* fix: buttons for tmtv and layout shift
* fix: various bugs wrt crosshairs
* fix: crosshairs re init on reset camera
* fix: middle slice calculation different from cs middle reset camera
* fix: reset camera should reset viewport camera
* fix: loading segments in MPR mode
* fix: tmtv hp back to before
* fix: layout shift
* feat: orientation markers for volume viewport
* fix: capture for volume viewports
* fix: memory leak for back to worklist
* fix: loading bar bg color
* fix: side panel for only one panel
* fix: react select style in production
* fix: various styling for segmentation groups
* fix: various ui styles
* feat: add new segmentation config styles
* fix: hover state for segmentation item
* fix: side panel layout shift
* temp add panels
* try to fix scrollbar for thimbnail
* fix: scroll not appearing for side panels
* feat: changed styles for scrollbar
* feat: add cpu fallback warning
* fix: webworker destroy
* fix: select styles
* fix: orientation marker color and position
* fix: capture screenshot for volume viewports
* fix: hide segment visibility on mpr
* fix: reloading an already loaded seg displayset
* feat: add is equal
* fix: mpr jump to measurements
* apply review comments
* fix: optimization for the segmentation load
* fix: remove unnecessary context menu and hp service reset
* fix: segmentation service wrt brush settings
* feat: initial work for the stack synchronization
* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements
* fix: various react proptypes
* fix: thumbnails for the tmtv and change default props to default params
* feat: make showing loading indicator configurable and add docs
* bump versions and add more docs
* fix demo
* update cornerstone versions
* apply review comments
* feat: add reference lines
* fix build
* fix unit tests
* add reference lines icon
* fix: e2e tests
* fix static wado config
* docs: add segmentation service docs
* fix: docker build
* fix: keep camera and bump versions
* Try re-enabling minification to fix deploy previews
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy
* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number
* fixed minor React bugs (errors on console)
* fixed React's console bugs that are logged for some series that doesn't have "description"
* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)
* metadata parser fix - providing default values of imagePlaneModule
* measurement SR support on multi-frame DICOM
* bug fix - jumping to the selected measurment on multi-frame DICOM
* upgrade dcmjs dependency to 2.8.1
* StudySummary component - allow "description" to be null
* make getUIDsFromImageID() method public from MetadataProvider
* imageId usage fixes to be more stable
* change the variable name to be more meaningful
* fix metaProvider importing
* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.
* use Array.findIndex instead of plain for loop
* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.
* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits
* simple code refactoring
* refactoring for checking undefined values - mappedAnnotations
* remove unreachable code
* code refactoring - prefer conditional chaining
* fix how we access imageIds of viewport (StackViewport)
There had been a change made to make the hanging protocols
auto initialize, but that caused problems on mode init
because the couldn't specify the hanging protocols any longer.
THis change restores that, and also improves the API a little
bit by allowing the display set selectors to be specified by id
instead of positionally.
fix(hp):PR Review Comments
fix(hp):Unit test and docs
* feat: add more types to HP service
* change hp to have apply protocol
* feat: mpr initial work
* apply protocol by id
* feat: mode should be able to apply protocol directly
* fix: wrong inheritance for viewports drag and drop
* apply review comments
* initial upgrade commit for tailwind
* fix: inconsistensies in button
* fix: various places with conflicts
* final fixes
* fix: dialog header color
* apply review
* feat(HP): Apply HP to display sets, fix race condition
* fix: displaySetService no event not needed (#2912)
* fix various styles and renamings
* feat: refactored hp service
* fix: use HP service event for viewport grid
* remove unnecessary doc
* fix test
* apply review comment
* fix: segmentation creation
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* fix: ptDisplaySet metadata problem
* fix: typo in xhrHeader field
* fix: temporary fix for crosshairs on reload data
* fix hotkey bug for input fields
* upgrade docusarusu to stable release
* circle ci node upgrade
* cypress node upgrade
* bump node in netlify
* bump node version
* remove versioned docs
* update resources
* fix: webpack injection of plugins
* fix meaningful label for panels
* add reviews and fix cli for creation
* copy over chunks if exists in the build
* edit templates
* edit templates
* fix yarn lock
* fix(plugin):Deploy on windows is broken
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: cs3d tools and toolGroups (#20)
* add more tools to work with cs3d mode
* fix hotkeys
* add stack manager usage for stach viewports
* add image scrollbar
* wip viewport overlay
* fix toAnnotation schema for tools
* fix the unnecessary size change that triggered resize
* hanging protocol improvement to allow unmatched errors
* study description matching for hanging protocol
* fix the displaysetOptions to work
* fix handle the active tool when a new viewport is added
* fix separate toolGroups for mode
* apply review comments
* apply review comments
* yarn lock
* feat: overlay component (#21)
* fix default displayset options
* add viewport overlay
* apply review comments
* feat: loading and orientation indicators (#22)
* add loading indicator
* add orientation marker initial work
* apply review comments
* fix: orientation markers (#23)
* finished the orientation markers
* fix various broken cypress tests
* apply review comments
* update yarn lock
* feat: re-working measurement tracking mode with cornerstone3d (#2805)
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: Add Measurement tracking mode with cs3D (#2789)
* feat: first render for cornerstone3d tracked viewport
* make tool active work
* wip for SR extension
* renamed dicom sr to cornerstone dicom sr
* remove cornerstone from dicom pdf and video
* move dicom sr logic to sr extension
* feat: Add hydration for the length tool
* fix SR display tool for length using cs3d
* fix default config
* fix: various bugs with sr viewport and tracking
* fix promptying to continue tracking for when SR is created
* feat: add keep trackign of unique identifiers
* fix hydration for same imageIds
* feat: Add SR toolGroup creation on modeEnter
* feat: remove the need for separate mapper for SR hydration
* add SR display for ellipse
* handle hydration of elliptical ROI tool
* remove cornerstone extension
* add arrow mapping
* feat: Add ArrowAnnotate SR display and hydration
* apply review comments
* apply review comments
* move viewport labels to the viewportData
* apply review comments
* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)
* fix: integration cypress tests with cornerstone3D
* revert to addOrUpdate as it makes more sense
* fix local drag and drop
* fix tests
* move dicomLoaderService to cornerstone extension
* fix various import bugs
* fix bug for local PT series
* fix various unit tests
* bump cs3d versions
* add angle and magnify tool
* bump dependencies to avoid broken peerDeps
* feat: add initial work for capture using cs3d
* feat: show annotations on the image capture
* feat: add svg layer export
* feat: Add CINE Tool
* feat: remove unnecessary viewport rendering for cine state changes
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* docs: modify and improve documentation (#2800)
* cleanup docs versionings
* feat: Add all version explanations
* version docs for 3.0
* wip for changing docs
* wip for updated docs
* add utility module documentation
* fix demo with nohoisting of history
* add slides and video to resources
* apply review comments
* fix: drag and drop SR into SR viewport (#2803)
* update yarn lock
Co-authored-by: Erik <erik.sweed@gmail.com>
* update pathnames to match v3-stable
* update the e2e pathname
* fix: various bugs with regard to tracking workflow (#2811)
* fix: various issues with measurement panel
* fix: update default tool style for annotations
* fix: annotatoin label getting removed
* feat: Add backward compatibility for SR hydration with legacy cornerstone
* fix: cursors and ellipse ROI max style
* fix: ArrowAnnotate SRDisplay
* apply review comments
* bump package versions
* fix: bugin rehydration of SR
* fix: e2e tests
* fix active viewport thickness and arrowTool ui
* add readme for measurement tracking
* use uploaded image for readme
* add back images
* try to fix e2e test
* fix: window level presets hotkeys
* Update README.md
* update yarn lock
* feat: volume api and TMTV mode (#2817)
* feat: volumeAPI and TMTV mode
* feat: use cs3d cache service to obtain viewportData
* wip for volume api
* wip: fusion viewport
* feat: add blend mode option
* wip for image scrollbar
* fix drag and drop thumbnail
* wip for image scrollbar for voluems
* fix: element mismatch bug for scroll
* feat: Add image scrollbar to volumes
* feat: add syncGroups to volume api
* feat: add tmtv mode initial setup
* feat: add initial image options for the stack viewports
* feat: Add custom load strategy for volume viewports via HP
* apply review comments
fix: Jump presets cs3d (#2812)
* feat: Add JumpPreset to OHIF for Cornerstone3D
* fix: accessing viewport service from servicesManager
feat: volume API and TMTV mode (#2814)
* fix: do not display overlays on mip viewports
* feat: add optional disableCommands for toggle buttons
* fix: toggleCrossharis
* feat: config the crosshairs
* feat: add PetSUV Panel for changing metadata
* feat: initial work for the rectangleROIThreshold panel
* wip: measurement service
* roi threshold working
* feat: Add displayText to segmentations
* feat: add remove segmentation
* feat: add csv export
* feat: add RT export for annotations in tmtv mode
* fix: fusion to use pt in tmtv mode and measuremet mappings
* fix: various bugs
* apply review comments
* apply review comments
* feat: add fusion color maps
* add readme to tmtv mode
* Update README.md
* fix: try to fix build
* fix unit tests
* Update README.md
* feat: add about to the panel
* fix: changing strategy in roi panel
* apply review comments
* update package versions
* wip for stackPrefetch
* fix: cornerstone3d hydration and renaming (#2818)
* update readme
* renamed cornerstone extension
* wip for renaming cornerstone3D variables
* wip for renaming cornerstone3D variables
* wip for fixing bugs for SR viewport
* fix: jumpToMeasurement and initial label after hydration
* fix: fileName capitalization
* feat: use the new prefetch stack in the cs3d (#2820)
* feat: use the new prefetch stack in the cs3d
* use viewport scroll api for stack viewport
* fix cine stop when scrollbar changes
* feat: use new prefetch events
* fix loading state to not show repeatedly
* fix: various bugs for tmtv mode thresholding and new icons (#2823)
* feat: make tmtv mode available in worklist
* feat: add new icons for tmtv mode
* feat: add fusion color icon
* fix: parallel scale calculation
* fix: bump Cornerstone to get large image support working
* fix: Fix issues with CPU viewport flipping, including config files
* fix: bump cornerstone to fix magnify tool
* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport
* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys
* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors
* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)
Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.
* bump: dependency versions to fix hydration bugs (#2848)
* bump: dcmjs version to fix hydration bugs
* try to fix tests
* bump dependency versions
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
