* fix bugs for the RT for the new demo
* fix SM with the static-wado server
* remove thumbnail from tmtv
* migration guide
* fix stability for the rt struct
* apply review comments
* add loading indicator to SM
* pdf works
* try to fix relative bulkData
* fix the rest
* fix preflight for the SM
* fix typo
* apply review comments
* yarn lock
* fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering
* Added a progress indicator when switching to a list of more than 1000 rows.
* Switched to using react-window to virtualize the dicom tag browser window.
* Added filtering to the DICOM tag browser with a new search UI widget.
Lots of tweaks and updates to the look-and-feel.
* Removed unused import.
* PR feedback including some UI tweaks.
* More PR feedback.
---------
Co-authored-by: Igor Octaviano <igor.octaviano@radicalimaging.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
* fix(command): Added command and hotkey binding for navigate to next and previous display set.
* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.
* Renamed some methods for clarity.
* Scrolling active thumbnail into view for an updateViewportDisplaySet
* Added a null check.
* Added check to minimize thumbnail scrolling.
* fix(Measurement): fixed line dashing of measurements in various scenarios
For a StackViewport simply rely on the SeriesInstanceUID being part of the
tracked measurements or not.
For a VolumeViewport first check the image id of the current image in the viewport
and then check the SeriesInstanceUID (like for a StackViewport) if an id is returned.
To reliably get the id of the current image, listen for the VOLUME_VIEWPORT_NEW_VOLUME event.
* Changes for PR comments.
* fix(Video): Added fallback checks for DICOM video
Added some docs for video, pdf and upload.
* Added separate headings for DICOM PDF, DICOM Video and DICOM Upload in the docs.
* Updated docs for singlepart data source configuration.
* fix(local): should use dicomlocal for localbasic
* chore(github): styling for issues forms
* try to fix netlify
* apply review comments
* apply review comments
- prevent non-cornerstone viewports from showing the image download dialogue
- passing the rendering engine id to ToolGroup.addViewport
- fixed the keep/dismiss aspect feature
* feat(custom displayOptions): add custom options to every level of hanging protocols
* move set preset down to cornerstone3d
* works
* fix tmtv based on new api
* fix unit test
* close
* review1
* upgrade packages
* update packages
* apply review comments
* recursive call
* less copy
* apply review comments
* fix e2e tests
* apply review comments
* revert
* apply review comments
* apply review comments
---------
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix(dicomlocal): navigate /local to the work list and /localbasic to the (basic) viewer
For TMTV, consider both the forward and back slash separator for modalities.
* Fix to TMTV isValidMode method.
* PR feedback:
- replace forward slashes with back slashes for modalities in the WorkList instead of in the Mode.
* Added query.series to DicomLocalDataSource.
* fix: KO series being displayed in browser list
* fix sr for volume viewports
* move highlight labelmap to RAF
* remove commented code
* fix the hydration bug for the SR
* apply review comments
* revert the key images for sr
* Remove some obsolete changes
* set initial image for sr instead of jump
* Remove viewportType stack
---------
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* fix(Measurements): return {} instead of undefined for getSOPInstanceAttributes
* PR feedback:
- separated measurements from non-acquisition plane
- reverted to previous behaviour of returning undefined in getSOPInstanceAttributes
* Added unit tests for unmapped measurements.
* PR feedback: added comments to the unmappedMeasurement used in the unit tests.
* fix: multiframe
* fix the unnecessary use of prior since some servers dont like it
* add authentication via token in url
* add data citation
* add resources
* upgrade packages
* yarn lock
* apply review comments
Update HangingProtocolService doc to include example and instructions to use custom attributes included in @ohif/extension-test. Example shows usage of sameAs for frame of reference check in tmtv hanging protocol.
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI
* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.
* Fixed broken e2e tests.
* choe(modes, components): improved readability
This commit includes changes to improve performance in the basic-dev-mode and Thumbnail components.
Additionally, a change in the webpack configuration file was made to ignore ".min.js.map" files.
The defaultDataSourceName was also added to several configuration files, and whiteLabeling code was removed
from the local_orthanc configuration file.
* fix(cli): better path management and add dependencies
* better docs
* add default tool group to the templates
* add review comments
* apply review comments
* try to fix test
* fix thumbnail in tests
The description for the numberOfDisplaySetsWithImages property was corrected. The update also involves adding a callback property that returns several objects (matchedViewports, viewportMatchDetails, displaySetMatchDetails) and returning them from the method 'findViewportProtocols'. The refactored code also has better readability.
* fix: Jump to measurement after presentation store
* Fix initial load of DICOM SR
* Fix measurement highlight issues
* Clear measurements changed to array
* Fix merge issues
* PR comments
* Removed unused formatting. Change to single event
* Fix the unit test
* PR review comments
* refactor(viewport): simplify imports, align destructuring
Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.
---------
* feat(DICOM Upload)
OHIF #3297
- DicomWebDataSource.store.dicom now accepts an ArrayBuffer of data sets to store
- DicomWebDataSource.store.dicom now also accepts optional callbacks to track upload and an AbortSignal object to cancel upload
- Added DicomFileUploader class that performs and tracks the upload of a DICOM file
- Added various UI pieces for the upload: DicomUpload, DicomUploadProgress, DicomUploadProgressItem
- ProgressLoadingBar was extracted from LoadingIndicatorProgress so it can be reused
- Modal dialogues can now optionally prevent an outside click from closing the Modal
* Passing an XMLHttpRequest to the dataSource.store.dicom method instead of callbacks and AbortSignal.
Cleanup of various UI pieces to minimize code and increase readability.
* Made the DicomUpload component a customization module exported by the cornerstone extension.
* Exposed a copy of the data source configuration via the IWebApiDataSource interface.
Added dicomUploadEnabled to a data source's configuration.
* Code clean up.
* Upgraded the dicomweb-client version to one that provides the ability to
pass a custom HTTP request. DICOM upload uses that custom HTTP request
to track progress and cancel requests.
* Distinguished between failed and cancelled uploads.
* Allow no selection in the upload dialogue.
Fixed the styling of various progress information so that everything aligns.
* Switched from cornerstone wado image loader to cornerstone dicom image loader for DICOM upload.
* Added special cancelled icon to differentiate from failed.
* Added a bit of spacing between the upload progress bar and percentage.
* Fixed minor issue with upload rejection.
* Performance improvement for cancel all uploads:
- use React memo for each upload item progress (row)
- do not await each request of a cancel all
* Fixed various padding/spacing for the DICOM upload drop zone component.
Changed the border dashing for the DICOM upload drop zone to be a background image gradient.
Added hover and active effects to the 'Cancel All Uploads' text.
* fix: viewportdialoge not appearing in non-tracked viewports
* feat(viewports): Introduce useViewportDialog and remove deprecated API
This commit introduces the `useViewportDialog` hook and replaces the deprecated `viewportDialogApi` with the new `viewportDialogState`. Additionally, the notifications in `OHIFCornerstoneRTViewport` and `OHIFCornerstoneViewport` have been removed. Finally, the `CinePlayer` component now accepts optional parameters.
* fix tests
* feat(cst): Add new command to get nearby annotation tools
This commit adds a new command `getNearbyAnnotation` to the `commandsModule.ts` file that identifies nearby annotation tools excluding Crosshairs and ReferenceLines. It also removes an unused mapping to `Crosshairs` in `initMeasurementService.js` and changes the command run in `findNearbyToolData.ts` to `getNearbyAnnotation`.
* perf(cornerstone): Improve performance by optimizing tools
Removes unnecessary imports to improve app's performance. Changes how annotations are detected on the `commandsModule.js` file by fetching the `isAnnotation` property of the tool instance if available. Updates `CrosshairsTool` and `ReferenceLinesTool` to not be annotations anymore. Adjusts the `localhost` URL ports for the `dcm4chee-arc` service interface on `local_dcm4chee.js` to allow for more efficient server communication.
* feat(cornerstone): Add CornerstoneServices type and ToolGroupService.getToolGroup to get tool group by ID or active viewport
This commit introduces the new CornerstoneServices interface to the code and adds the ToolGroupService.getToolGroup method, which can retrieve a specific tool group by ID or from the active viewport. The older _getToolGroup method has also been removed from commandsModule. When no tool group ID is provided, this method now retrieves the tool group from the currently active viewport with the help of getActiveViewportEnabledElement. Additionally, the required reference to @ohif/core has been removed.
* feat(storybook): Refactor Storybook to use Typescript
This commit updates the Storybook configuration to use Typescript, including renaming `main.js` to `main.ts`, updating `core.builder` and `framework.name` to use `@storybook/builder-webpack5` and `@storybook/react-webpack5`, respectively. The code also adds options to `addon-docs` to enable adding GFM support to the generated docs. Additionally, the commit modifies `staticDir`, removes outdated addons, and makes various devDependencies and PostCSS updates to align with Storybook 7.x.x. Finally, the commit removes some unused code and relocates `Button` and `AboutModal` story files.
* apply review comments
* update yarn lock
* fix(Browser history):
- fixed an NPE when navigating to a different study via the URL
- exposed browser history navigation via a command
* Added documentation for the navigateHistory command.
Moved the history object from UI to viewer.
* feat: initial RT support
* make the segmentation service work with representation data
* feat: make segmentation service work with representations
* fix rtss vis
* fix: rt hydration
* fix the rendering of rt names
* fix imports
* refactor: Modify status and click handling for hydration of RTStructures
Modify status and click handling for hydration of RTStructures by renaming `onPillClick` to `onStatusClick` in `OHIFCornerstoneRTViewport.tsx` and `_getStatusComponent.tsx` files. Also, update initial segmentation configurations in `PanelSegmentation.tsx` and simplify configuration changes and values for segmentation service in `SegmentationService.ts`. Finally, remove console debug in `CornerstoneViewportService.ts`.
* wip for highlighting contours
* refactor rt displayset code
* review code update
* update cornerstone dependencies
* refactor: Update license year, version number, and minor code cleanup
This commit updates the license year in several files, updates the version number in package.json, and contains minor code cleanup in two files.
* add bulkdataURI retrieve for RT
* fix package version
* apply review comments
* apply review comments
* apply review comments
* feat(panels): refactor and streamline segmentation configuration and inputs
Rewrote state hooks and streamlined the configuration input for `PanelSegmentation` to be more verbose and reusable. Included several new input types, including the `InputRange` component which now shows a fixed floating value based on the step provided. The `SegmentationConfig` component now works with dynamic values controlled by `initialConfig`. These changes should improve function usability and make the code more maintainable going forward.
* fix various bugs
* fix contour delete by upgrade cs3d version
* feat(viewport, inputNumber, segmentationConfig, orthanc): Implement minimum and maximum values for input number components, and useBulkDataURI for Orthanc configuration. Compare measurement view planes with absolute viewport view planes in Cornerstone viewport.
* update yarn lock
* fix: Make the cornerstone sR viewport show all measurements
* PR fixes
* PR fixes
* Add a DICOM SR hanging protocol
* Duplicate the hanging protocol for seg as well
* PR requested change
* PR requested changes
* PR fixes plus merge update fixes
* PR fixes and integration test fix
* PR - documentation
* feat: Add a new hanging protocol @ohif/mn
* Add @ohif/seg example
* PR comments and a couple more fixes to make things cleaner
* PR comment
* Added an example to cause the PR checks to rerun
* Use more consistent type/structure for services
* Fix restoring SR so the tests described work
* One more typed service
* Added types for the Cornerstone library
* Couple more type fixes
The sameAs function requires displaySetMatchDetails and displaySets to compare attributes between display sets, but these properties were not being passed into the options object. This commit adds the necessary lines of code to include displaySetMatchDetails and displaySets in the options object, fixing the issue where the custom attribute function 'sameAs' was missing required data.
* feat: Allow navigating to a specified series and sop instance
This was a feature in OHIF v2, so adding it to v3, albeit with new
parameters.
feat: Allow comma separated as well as repeated args params
* docs
* Test fixes
* feat: Navigate to SOP selected - PR fixes
* Updated docs
* PR fixes
* fix: The display of linked viewports during drag and drop has a race
* PR review comments
* fix: Segmentation display two up
* Removing console logs
* Fix the blank viewport can have stuff added to it
* Fix the null name on HP module
* Fix the navigate to initial image
* Fix the nth interleave loader
* Fix the unit tests
* PR comments - docs mostly
* fix: Exception thrown on change displayset after double click
* feat(DoubleClick): double click a viewport to one up and back
Added a toggleOneUp command that puts the active viewport into a 1x1 grid layout
and it toggles out of 'one-up' by restoring its saved 'toggleOneUpViewportGridStore'
from the StateSyncService.
Added double click customization for the Cornerstone extension with the
default double click handling being the toggleOneUp command.
Added a cypress test for the double click functionality.
* PR feedback:
- tracked viewport measurements no longer show as dashed when toggling one up
- disallowed double clicking near a measurement
- updated cornerstone3D dependencies to fix double click of TMTV and volume viewport 3D
- created ViewportGridService.getLayoutOptionsFromState
* Updated the ViewportGridService docs.
* Switched to using 'cornerstoneViewportClickCommands' and consistency with the context menu clicks.
* feat: Allow customizing the measurements panel.
Also includes default display of the site/finding values from the DICOM
SR object.
Update fixes
PR review comments - move the recordInteraction to COmmandsManager.run
PR fixes
fix: Dependency updates to allow right click to be recognized
PR fixes
* Use newer CSWIL
* Make both the base measurements and the tracking measurements show codes
* Fix the right click context menu bringing up menu
* feat: Context menu
feat: Custom context menu
Adding documentation
PR updates
* fix: Capture tool exception
* PR updates
* Add fully worked out examples in the basic test mode/extension
* Fix the menu display
* fix: Make the commands on clicks much more configurable
* Wait for load before double clicking
* docs
* PR changes - nothing functional, just moving things endlessly
* PR comments
* PR changes - rename the default context menu
* Renamed the cornerstoneContextMenu to measurementsContextMenu
* Add chevron right to the sub-menus
* fix: Some residual issues with hanging protocol after state sync
fix: Some issues introduced by the state syncing changes
* fix: PR fixes, mostly code cleanup
* Improve a race condition in an automated test
* Remove obsolete code
* PR fixes
* feat: Add state sync and use it to remember viewport grid info
fix: Version updates
Fixes for toggling MPR mode
Fix the display when the interleaved load module fails
Fix the memory of the state to restore correctly
PR fixes for the state sync service
PR fixes
PR fixes
PR fixes
Added a hack warning to remove volumeDeactivate
Fixes for TMTV colormap setting
Fix the casing
Missed renames
fix: tests not running due to variance in ordering
Reverting some fixes to change case
PR changes - mostly comments and minor improvements
fix: All display sets were being updated on drag and drop
PR fixes - mostly renames
PR fixes
Test support for OHIF, for HP branch
test: Add at least a minimal set of automated tests for hanging protocols
Docs
PR fixes
Merge fixes
DOCS updates
Add an example of the mn hanging protocol
PR fixes
PR fixes
PR fixes
* Fix the drag and drop
PR fixes
* PR changes - update default keys for next/previous stage
* fix: Was storing the custom viewport grid too aggressively
Caused by a PR change misspelling a variable
* feat(SidePanel)
OHIF issue #3135
- Added a method to set a callback for a Panel to invoke when it is ready
to be shown (e.g. its data is loaded).
- Implemented such methods for both the segmentation and measurement panels.
- The SidePanel component now adds a callback to Panel components so that
it will automatically open a Panel that was initially closed and yet to
be opened.
- Updated the OHIF documentation accordingly.
* PR feedback
- added a PanelService that centralized much of the logic that existed in panel PanelModule
- the SidePanel subscribes to PanelService.EVENTS.ACTIVATE_PANEL for each of its child panels
* Removed the PanelMeasurementTableTracking setMeasurementPanelContentReadyCallback method.
* Made the forceActive flag in the PanelService optional and defaulted it to false.
* Fixed failing top level exports unit test.
* - PanelService subscriptions are now per panel (id) so subscribers do not
necessarily need to check the panel id in the event when it is fired
- PanelService activate panel trigger subscriptions are now returned
so that they can be (better) managed outside of the service
- updated/created the various documentation for panels and PanelService
* Clarified various documentation.
Moved the code to add the activate panel triggers out of the extensions
and into the longitudinal mode.
* Removed the openWhenPanelActivated flag.
PanelService now conforms to extending PubSubService like the other services.
Updated various documentation.
* Fixed failing e2e, mpr test.
* Renamed the ActivatePanelTriggers type properties.
The ExtensionManager now sets the id of various modules as a property on each of those modules.
* overlay customization
* custom overlay definition and examples
* minor fix - import statement difference between cornerstone and cornerstone3D
* move "VOI" and "Zoom" calulation to the ViewportOverlay component, make OverlayItem fairly dull
* type specifications
* follow up fixes for CustomizationService changes on upstream
* [fix] various fixes related to custom overlays (formatting, toggling)
* [fix] various fixes related to custom overlays (formatting, toggling)
* right side overlay panels - align right
* [fix] remove "notification" from toggleOverlay command
* comments
* [refactor] remove unused imports
* documentation of customizable overlay configuration
* prettify
* review of documentation of customization service
* fix useCallback() dependencies
* fix useCallback dependencies
* documentation for customization service
* documentation for customization service
* Add CT volume in PET ROI Thresholding (#3053)
* Add CT volume in PET ROI Thresholding
* Change UI ROI Threshold config
* Refactoring ROI Threshold configuration Panel
* fix menus
* try to fix build preview
* try to fix build preview
---------
Co-authored-by: rodrigobasilio2022 <114958722+rodrigobasilio2022@users.noreply.github.com>
* feat(ViewportActionBar): OHIF issue #3123 (#3186)
* feat(ViewportActionBar): OHIF issue #3123
- Renamed previous viewport action bar to be LegacyViewportActionBar
- Components LegacyViewportActionBar depends on also renamed: LegacyCinePlayer and LegacyPatientInfo
- New Viewport coded to specs in issue
- added React hook useResizeObserver
- added some tailwind classes
* Updated tailwind to 3.2.7.
Put external imports like React at the top of the import list.
* feat(CinePlayer and ViewportActionBar) (#3198)
* feat(CinePlayer and ViewportActionBar)
- OHIF issue 3123
- new look cine control implemented
- new custom blue color in tailwind config for various hover backgrounds in the cine control
- new icons added for cine
- Tooltip component now can be placed top (center) on hover
- Tooltip component border colour now consistent with specs
- fixed NPE in ViewportActionBar
- upgraded tailwind to 3.2.7 in platform/ui
- fixed issues in various button components brought by tailwind 3.2.7 where classes now need important flag
- fixed issue with InputRange component so that the tracked value property can change externally
- InputRange component can now optionally show its label
- added new measurement tracking state service to hydrate SR without prompting
- segmentation can also now be hydrated without prompting
* PR feedback:
- cine centralized to OHIFCornerstoneViewport
- introduced a type for the CinePlayer properties
* Addressed PR comments and concerns...
The DOM ref for the root component of the ViewportActionBar is now added to state
so that the various callbacks and ResizeObserver are updated with it.
The CinePlayer FPS slider tooltip was moved up so that its arrow does not
intersect the FPS text.
The hover area for the CinePlayer slider tooltip is now the FPS < > buttons and text.
The tracked measurements are now filtered to only include those of the active
viewport series when the tracked measurement navigation arrows are used.
* Addressed PR comments...
The update to tailwind 3.2.7 caused several look-and-feel, UI regressions,
so we are rolling back to 3.2.4.
* tests: add various e2e tests for MPR and measurements
wip
add cypress config
feat: add mode and extension for testing
add hp applied through search params
add MPR tests
apply review comments
add more e2e tests
update yarn lock
* fix unit tests failing
- formatPN should accept a string person name as well as an object with a Alphabetic field.
- For DICOM JSON data sources, spread in the patient data from the study object into the instance.
* fix(ViewportGrid): In ViewportGrid, fill blank viewports with display sets not yet in grid.
ViewportGridService now allows off-screen viewports to remain so that
so as to maintain continuity if they were filled by the UI/user.
* PR feedback: moved getNumViewportPanes into the ViewportGridService API.
* PR feedback:
- renamed some variables
- proper import/export of IDisplaySet
- added some comments for clarification
- fixed broken e2e tests
* Some missed rename of Services.
* fix(misc):Update the data source name, provide a /datasources
Update the imports for a few things to match, to avoid 2 versions
Fix the datasources name
pr:Make the data source selector configurable
* Updated data source selector page as requested
* PR fixes
* fix: OHIF-433 Clicking on measurement should highlight the measurement row in the measurement panel
Added selected flag to each OHIF measurement.
Listening to CS3D ANNOTATION_SELECTION_CHANGE to keep the selected flag in sync.
* fix: OHIF-433 Clicking on measurement should highlight the measurement row in the measurement panel
Fixed broken unit tests.
* PR feedback from Alireza:
- use MEASUREMENT_UPDATED event for selection changed
- added TODO to eventually have CS3D introduce the selected flag per annotation
- added MeasurementService._publishEvent
* PR feedback: now using _broadcastEvent
* fix: app-config settings are ignored in OHIF v3
github issue #3051
Remove default route from baked in routes if showStudyList is false.
* fix: app-config settings are ignored in OHIF v3
github issue #3051
PR feedback - simply remove default route from the baked in routes.
* fix: app-config settings are ignored in OHIF v3
github issue #3051
PR feedback - updated CS3D tools version
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
The primary button will always be the layout grid selector and the MPR toggle is in the drop down menu.
This is the first step to later adding other (e.g. 3D) layout HPs to the menu.
Summary of changes/fixes:
- SplitButton now allows for its primary button to be any button component specified by a UI type.
- SplitButton passes a className to its primary button component to dictate how it should be rendered
based on its active/toggle status, hovering, menu visibility etc.
- The default menu item renderer for the SplitButton, renders acitve toggle items correctly.
- Items/buttons in the toolbar are now all the correct and same size.
- Added ToolbarService.getButtonComponentForUIType to fetch a button component for a given UI type.
- Spacing between toolbar items is now done at the Toolbar level to avoid double spacing and to ensure
uniform spacing.
- The drop down menu closes when clicking the primary button.
- Show a mouse down click effect when clicking the primary button.
Items to investigate still:
The following are all slightly contrary to the design specs of the UI:
- Is the click effect on the primary button satisfactory because with the hover border effect, the
button appears slightly smaller during the mouse down/up operation? (MEDIUM)
- On hover over the drop down button, the right-hand-side corners of the primary button appear
rounded and NOT square. Also the hover over the drop down button border effects make the primary
button appear smaller. (MEDIUM)
- Should there be hover effects when hovering over either tooltip of the SplitButton? (LOW)
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
Fixed broken e2e tests.
data-cy and data-tool properties now passed down to primary button component.
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
On drop down button hover, the primary button now stretches all the way right with no right border
and with square corners in the top and bottom right as per the toolbar spec.
The mouse down effect gives a full button look (i.e. no borders) with rounded corners all around and black text icon.
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
Documented that the primary button of a split button can specify a UI type.
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
Feedback from PR review to fix prettier formatting issue.
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
Added TODOs as per Bill's request in the PR.
* feat: Combine the layout grid selector tool with the toggle MPR button into a split button.
Feedback from Alireza: reverted the layout selector and MPR tools to be separate toolbar items.
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
* feat(imageLoader):Add an nth image loader strategy (#10)
* Updates for PR for nth menu
* performance:Prior implementation was O(n^2), taking about 50 ms
* feat:Nth image loader, added docs as requested
* fix: Use single quotes instead of backticks when specifying the environment variable that should be substituted for the envsubst command.
GitHub issue: #3079
Removed duplicate calls to envsubst.
Default nginx listen port is now 80.
Adde markdown documentation.
* fix: Fixed some typos and wording in markdown documentation.
GitHub issue: #3079
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
* fix(grid):Grid service wasn't being reset
* fix(service):Fix the initial service state
Services with mode specific state differed in internal state between
initial and subsequent load. This fix address that structurally by
allows the mode to store/manage service state, but makes the
responsibility of service state central to the service.
I followed suit with how it was implemented in the v2 branch, on the 404
page I just hit the link back to the study list if we're not configured
to display it. See PR #2131
* feat(customization):Add a customization service
Update UICustomizationService to v3-stable.
Also, adds an example customization for tab colors
* moved the customization service to ui category
* feat: warn for overlapping segments
* fix: typo
* refactor mpr toggle and stack sync
* fix: wip for more general mpr
* fix: tool groups for mpr
* fix: changing of viewport id
* fix: viewport Id for the seg viewports
* fix
* update cornerstone version
* init bring v2 tag browser to v3, some small bug fixes
* moved tag browser to default extension, altered style to be more OHIF-v3-like
Co-authored-by: Michael Andersen <Michael.Andersen@rmp.uhn.ca>
* feat: add initial sop class handler for SEG
* feat: move segmentation service
* update segmentation service methods
* fix: viewport data structure
* feat: Add initial render for the DICOM SEG for each displaySet
* fix: various wrong architectural dependencies between services
* feat: initial separate SEG display in each viewport
* feat: refactore viewport action bar
* initial work for SEG hydration
* fix: various bugs regarding drag and dropping different viewports
* fix: rendering issues for multiple seg displaysets
* fix: bugs for thumbnail and hydration
* feat: fix the initial segment color
* update after rebase
* feat: initial design for the segmentation group table
* feat: initial new design for the segmentation panel
* feat: segmentation panel
* feat: make segmentation appear on all related viewports
* fix: segmentation load bug based on functional groups
* initial work for segmentation crosshairs
* fix: various stylings and functionality
* fix: various stylings for the seg panel
* fix: overflow styles
* feat: add more ui components
* feat: added segmentation config
* feat: add jump to segment
* feat: add jump to segment for DICOM SEG viewport
* fix: bugs after rebase
* feat: jump in segmentation viewport
* fix: mpr support for seg
* feat: add more icons
* feat: new icons
* feat: add new side panel
* feat: add segmentation config
* feat: add loading indicator to ohif
* feat: make hanging protocols follow matching rules for viewports
* feat: enhance drag and drop to be hanging protocol aware
* fix: mpr restore previous layout
* fix: crosshairs toggle
* fix: add auth headers to the dicom loader via dicomwebclient
* fix: bug for crosshairs toggle in mpr
* fix: seg viewport reusing old toolGroup
* feat: add loading animation with lottie
* fix: various bugs for Segmentation hydration in mpr
* feat: change outline alpha to outline opacity
* feat: loading indicator for seg viewport
* fix: various segmentation group styles
* fix: local mode for seg
* feat: add animation for the highlight
* fix: loading indicatro to show segment indices
* feat: enhance modality drop down ui
* fix: panels
* fix: download form
* fix: layout shift in loading indicator
* fix: loading indicator to have correct values
* fix: update software number
* fix: image jump between MPR and default
* fix: segmentation cleanup and cine service cleanup
* fix: segmentation toolgroup clena up
* fix: highlight interval should not trigger again
* fix: issue with multiframe sorting
* rename: change onSeriesChange to onArrowsClick
* fix: buttons for tmtv and layout shift
* fix: various bugs wrt crosshairs
* fix: crosshairs re init on reset camera
* fix: middle slice calculation different from cs middle reset camera
* fix: reset camera should reset viewport camera
* fix: loading segments in MPR mode
* fix: tmtv hp back to before
* fix: layout shift
* feat: orientation markers for volume viewport
* fix: capture for volume viewports
* fix: memory leak for back to worklist
* fix: loading bar bg color
* fix: side panel for only one panel
* fix: react select style in production
* fix: various styling for segmentation groups
* fix: various ui styles
* feat: add new segmentation config styles
* fix: hover state for segmentation item
* fix: side panel layout shift
* temp add panels
* try to fix scrollbar for thimbnail
* fix: scroll not appearing for side panels
* feat: changed styles for scrollbar
* feat: add cpu fallback warning
* fix: webworker destroy
* fix: select styles
* fix: orientation marker color and position
* fix: capture screenshot for volume viewports
* fix: hide segment visibility on mpr
* fix: reloading an already loaded seg displayset
* feat: add is equal
* fix: mpr jump to measurements
* apply review comments
* fix: optimization for the segmentation load
* fix: remove unnecessary context menu and hp service reset
* fix: segmentation service wrt brush settings
* feat: initial work for the stack synchronization
* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements
* fix: various react proptypes
* fix: thumbnails for the tmtv and change default props to default params
* feat: make showing loading indicator configurable and add docs
* bump versions and add more docs
* fix demo
* update cornerstone versions
* apply review comments
* feat: add reference lines
* fix build
* fix unit tests
* add reference lines icon
* fix: e2e tests
* fix static wado config
* docs: add segmentation service docs
* fix: docker build
* fix: keep camera and bump versions
* Try re-enabling minification to fix deploy previews
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* WIP
* WIP
* WIP
* fixed Bill comments on PR - https://github.com/OHIF/Viewers/pull/2979
* added series number to series filter and removed extra console.log
* changed the filter of seriesFilterKeys to studyFilterKeys
* changed the seriesInstaceUID to SeriesInstanceUID to make coerence with StudyInstanceUID
* reverted change on extension retrieveMetadataLoaderAsync and make the right change on Mode.tsx
* fixed PR comments and add small information about the filters
Co-authored-by: Thomas Forster <thomasforster@MacBookPro-Thomas.local>
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy
* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number
* fixed minor React bugs (errors on console)
* fixed React's console bugs that are logged for some series that doesn't have "description"
* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)
* metadata parser fix - providing default values of imagePlaneModule
* measurement SR support on multi-frame DICOM
* bug fix - jumping to the selected measurment on multi-frame DICOM
* upgrade dcmjs dependency to 2.8.1
* StudySummary component - allow "description" to be null
* make getUIDsFromImageID() method public from MetadataProvider
* imageId usage fixes to be more stable
* change the variable name to be more meaningful
* fix metaProvider importing
* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.
* use Array.findIndex instead of plain for loop
* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.
* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits
* simple code refactoring
* refactoring for checking undefined values - mappedAnnotations
* remove unreachable code
* code refactoring - prefer conditional chaining
* fix how we access imageIds of viewport (StackViewport)
* add oidc logout route, button in menu
* removed old comments
* use local storage to trigger signout in other tabs
* refactored to make use useEffect
* cleaned up comments
* fix remove event listener
* moved remove leftover storage variable to beginning of usemount
Co-authored-by: Michael Andersen <Michael.Andersen@rmp.uhn.ca>
There had been a change made to make the hanging protocols
auto initialize, but that caused problems on mode init
because the couldn't specify the hanging protocols any longer.
THis change restores that, and also improves the API a little
bit by allowing the display set selectors to be specified by id
instead of positionally.
fix(hp):PR Review Comments
fix(hp):Unit test and docs
* feat: add more types to HP service
* change hp to have apply protocol
* feat: mpr initial work
* apply protocol by id
* feat: mode should be able to apply protocol directly
* fix: wrong inheritance for viewports drag and drop
* apply review comments
* fix(volume):Support volume viewing
* fix(multiframe):Display multiframe US, and multiframe PR fixes
* fix(metadataProvider):Don't call combine if frame not defined
* initial upgrade commit for tailwind
* fix: inconsistensies in button
* fix: various places with conflicts
* final fixes
* fix: dialog header color
* apply review
* feat(HP): Apply HP to display sets, fix race condition
* fix: displaySetService no event not needed (#2912)
* fix various styles and renamings
* feat: refactored hp service
* fix: use HP service event for viewport grid
* remove unnecessary doc
* fix test
* apply review comment
* fix: segmentation creation
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* Prevent IntelliJ config file from being pushed to the repository
* Rename module's name to reflect the created file for a new mode
* Rename the module's name to reflect the filed created for a new extension which uses now typescript
* fix: ptDisplaySet metadata problem
* fix: typo in xhrHeader field
* fix: temporary fix for crosshairs on reload data
* fix hotkey bug for input fields
* upgrade docusarusu to stable release
* circle ci node upgrade
* cypress node upgrade
* bump node in netlify
* bump node version
* remove versioned docs
* update resources
* fix: webpack injection of plugins
* fix meaningful label for panels
* add reviews and fix cli for creation
* copy over chunks if exists in the build
* edit templates
* edit templates
* fix yarn lock
* fix(plugin):Deploy on windows is broken
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: cs3d tools and toolGroups (#20)
* add more tools to work with cs3d mode
* fix hotkeys
* add stack manager usage for stach viewports
* add image scrollbar
* wip viewport overlay
* fix toAnnotation schema for tools
* fix the unnecessary size change that triggered resize
* hanging protocol improvement to allow unmatched errors
* study description matching for hanging protocol
* fix the displaysetOptions to work
* fix handle the active tool when a new viewport is added
* fix separate toolGroups for mode
* apply review comments
* apply review comments
* yarn lock
* feat: overlay component (#21)
* fix default displayset options
* add viewport overlay
* apply review comments
* feat: loading and orientation indicators (#22)
* add loading indicator
* add orientation marker initial work
* apply review comments
* fix: orientation markers (#23)
* finished the orientation markers
* fix various broken cypress tests
* apply review comments
* update yarn lock
* feat: re-working measurement tracking mode with cornerstone3d (#2805)
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: Add Measurement tracking mode with cs3D (#2789)
* feat: first render for cornerstone3d tracked viewport
* make tool active work
* wip for SR extension
* renamed dicom sr to cornerstone dicom sr
* remove cornerstone from dicom pdf and video
* move dicom sr logic to sr extension
* feat: Add hydration for the length tool
* fix SR display tool for length using cs3d
* fix default config
* fix: various bugs with sr viewport and tracking
* fix promptying to continue tracking for when SR is created
* feat: add keep trackign of unique identifiers
* fix hydration for same imageIds
* feat: Add SR toolGroup creation on modeEnter
* feat: remove the need for separate mapper for SR hydration
* add SR display for ellipse
* handle hydration of elliptical ROI tool
* remove cornerstone extension
* add arrow mapping
* feat: Add ArrowAnnotate SR display and hydration
* apply review comments
* apply review comments
* move viewport labels to the viewportData
* apply review comments
* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)
* fix: integration cypress tests with cornerstone3D
* revert to addOrUpdate as it makes more sense
* fix local drag and drop
* fix tests
* move dicomLoaderService to cornerstone extension
* fix various import bugs
* fix bug for local PT series
* fix various unit tests
* bump cs3d versions
* add angle and magnify tool
* bump dependencies to avoid broken peerDeps
* feat: add initial work for capture using cs3d
* feat: show annotations on the image capture
* feat: add svg layer export
* feat: Add CINE Tool
* feat: remove unnecessary viewport rendering for cine state changes
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* docs: modify and improve documentation (#2800)
* cleanup docs versionings
* feat: Add all version explanations
* version docs for 3.0
* wip for changing docs
* wip for updated docs
* add utility module documentation
* fix demo with nohoisting of history
* add slides and video to resources
* apply review comments
* fix: drag and drop SR into SR viewport (#2803)
* update yarn lock
Co-authored-by: Erik <erik.sweed@gmail.com>
* update pathnames to match v3-stable
* update the e2e pathname
* fix: various bugs with regard to tracking workflow (#2811)
* fix: various issues with measurement panel
* fix: update default tool style for annotations
* fix: annotatoin label getting removed
* feat: Add backward compatibility for SR hydration with legacy cornerstone
* fix: cursors and ellipse ROI max style
* fix: ArrowAnnotate SRDisplay
* apply review comments
* bump package versions
* fix: bugin rehydration of SR
* fix: e2e tests
* fix active viewport thickness and arrowTool ui
* add readme for measurement tracking
* use uploaded image for readme
* add back images
* try to fix e2e test
* fix: window level presets hotkeys
* Update README.md
* update yarn lock
* feat: volume api and TMTV mode (#2817)
* feat: volumeAPI and TMTV mode
* feat: use cs3d cache service to obtain viewportData
* wip for volume api
* wip: fusion viewport
* feat: add blend mode option
* wip for image scrollbar
* fix drag and drop thumbnail
* wip for image scrollbar for voluems
* fix: element mismatch bug for scroll
* feat: Add image scrollbar to volumes
* feat: add syncGroups to volume api
* feat: add tmtv mode initial setup
* feat: add initial image options for the stack viewports
* feat: Add custom load strategy for volume viewports via HP
* apply review comments
fix: Jump presets cs3d (#2812)
* feat: Add JumpPreset to OHIF for Cornerstone3D
* fix: accessing viewport service from servicesManager
feat: volume API and TMTV mode (#2814)
* fix: do not display overlays on mip viewports
* feat: add optional disableCommands for toggle buttons
* fix: toggleCrossharis
* feat: config the crosshairs
* feat: add PetSUV Panel for changing metadata
* feat: initial work for the rectangleROIThreshold panel
* wip: measurement service
* roi threshold working
* feat: Add displayText to segmentations
* feat: add remove segmentation
* feat: add csv export
* feat: add RT export for annotations in tmtv mode
* fix: fusion to use pt in tmtv mode and measuremet mappings
* fix: various bugs
* apply review comments
* apply review comments
* feat: add fusion color maps
* add readme to tmtv mode
* Update README.md
* fix: try to fix build
* fix unit tests
* Update README.md
* feat: add about to the panel
* fix: changing strategy in roi panel
* apply review comments
* update package versions
* wip for stackPrefetch
* fix: cornerstone3d hydration and renaming (#2818)
* update readme
* renamed cornerstone extension
* wip for renaming cornerstone3D variables
* wip for renaming cornerstone3D variables
* wip for fixing bugs for SR viewport
* fix: jumpToMeasurement and initial label after hydration
* fix: fileName capitalization
* feat: use the new prefetch stack in the cs3d (#2820)
* feat: use the new prefetch stack in the cs3d
* use viewport scroll api for stack viewport
* fix cine stop when scrollbar changes
* feat: use new prefetch events
* fix loading state to not show repeatedly
* fix: various bugs for tmtv mode thresholding and new icons (#2823)
* feat: make tmtv mode available in worklist
* feat: add new icons for tmtv mode
* feat: add fusion color icon
* fix: parallel scale calculation
* fix: bump Cornerstone to get large image support working
* fix: Fix issues with CPU viewport flipping, including config files
* fix: bump cornerstone to fix magnify tool
* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport
* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys
* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors
* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)
Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.
* bump: dependency versions to fix hydration bugs (#2848)
* bump: dcmjs version to fix hydration bugs
* try to fix tests
* bump dependency versions
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* fix ohif-cli cosmetic changes for help description
* refact code review fix main command name
* fix extension template fix extension-default package version
* feat: Add initial cli tool structure
* feat: add copying template files
* feat: Add mode template and command
* feat: Add readme template generation
* feat: Add documentation to extension template
* feat: Enhance documentation of the template mode
* fix: cli module type
* feat: Add config-based mode and extension registration (#2660)
* feat: Add ohif cli add/remove extension/mode (#2661)
* Basic working CLI for add-extension and remove-extension
* Basic cli for add/remove extension/mode, lots more to do.
* Cleanup and harden]
* feat: Add list of tasks to add-mode
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* feat: Add git initialization for the mode or extension template (#2662)
* fix: package json file to include templates
* feat: Add git initialization for the mode or extension template
* feat: Add more checks of git and target dir
* feat: refactore library utilities
* feat: Add the list command to print extensions and modes (#2664)
* feat: Add the list command to print extensions and modes
* Add todo
* Feat/ohif cli validation + auto install (#2671)
* WIP
* Working mode keyword verification
* Validation
* auto install extensions based on modes
* WIP remove unused extensions on removeMove
* Working add-mode, remove-mode automatic extension management.
* If extension is in used by a mode, don't allow the CLI to uninstall it
* Cleanup addExtension
* cleanup removeExtension and addMode
* Cleanup removeMode
* Update existing extensions with the needed keywords/peer deps
* Fix broken config
* Feat/cli search (#2677)
* feat: refactor pretty print for console
* feat: add search for modes and extensions
* fix: ugly colors
* Feat/ohif cli error handling publishing (#2679)
* WIP
* fix: webpack imports
* wip
* fix: react router dom private routes
* from last commit
* wip
* fix: webpack prod builds
* WIP
* Working regsitration with new IDs
* Stable
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* verify extensions when constructing modes. (#2681)
* verify extensions when constructing modes.
* Add version to unit tests so it conforms to schema
* Update ohif utils exposed via @ohif/core
* Fix import
* fix tests
* feat: ohif-cli link local modes/extensions for development (#2682)
* feat: enable cli to work with project root
* feat: add initial link package
* feat: add link and unlink extension
* feat: add link and unlink mode
* erro handling for link-package
* feat: add comment on ohif-cli linking for development (#2686)
* Docs/ohif cli (#2687)
* feat: Add documentation for templates
* feat: Add more documentation
* Fix/core publish (#2685)
* versions
* wip
* remove webpack clean output
* fix publish
* use next as dist tag for v3 for now
* fix webpack pro recipe for output
* fix: lerna publish next
* fix(cli): fix issues when trying to link an extension or a mode (#2725)
The generated package.json doesn't contain keywords property which is
required by the linkPackage function. The module apth wasn't correclty
handled too, and when there is no pluginOptions, it fails while reading
the file or while generating a default configuration.
* make dicom pdf and video work after cli merge
* add axios dependency
* comment out the chdir for now
* create id and version based on user inputs
* customizable path for extension and modes
* fix template to make the template mode load
* fix the questions to loop if path is not desirable
* fix templates
* correct package json order
* unify the package creation for extension and mode
* bump versions for each package
* bump extension versions to 3.0
* add gitignore to templates
* fix version requirements when ^
* update docs
* update docs and fix tests
* try to fix the tests
* bump node version
* remove the version from extensions
* remove the version from modes
* remove version from extensionManager
* fix eslint
* revert husky version
* fix eslint
* fix node version for new eslint
* fix documentatoin removing version
* fix cicle ci image version
* fix circle ci node image
* fix circle ci node image
* add back the video and pdf
Co-authored-by: Matthis Duclos <matthis.duclos@gmail.com>
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
* feat(OHIFv3):Add a video viewport
* Fixed a couple of viewing issues
* fix(OHIF):If not all instances are used by a given provider, then continue to add items
* Added video data
* Add a basic e2e test for video display
* Adding a screen shot as requested
* wip on storybook as a replacement for using UI components in docusaurus, since it causes too many problems
* fix: storybook webpack config
* feat: add more stories
* feat: add more stories
* feat: add more stories
* feat: fix logo and babel runtime error
* feat: move to mdx docs for ui
* feat: enhanced mdx for header and styles
* feat: Add button usecases
* feat: Add buttonGroup docs
* feat: Add docs and use case to cine and contex menu
* feat: fix decorators
* feat: add header and dropdown docs
* feat: add Icon and input docs
* feat: add more docs
* feat: add more stories
* fix: feedback section
* feat: Add doc page
* feat: Add typography and color stories
* yarn lock
* add analytics to v3-ui
* new banner image
* new viewport component
* update review comments
This change wraps the E2E test data into a github repository, which is then included in the test builds as static data.
That makes running the e2e tests as simple as:
yarn test:e2e:server
yarn test:e2e
without any need to have docker etc installed/running.
This is the initial addition of the config point settings to allow run time loading of GUI settings via "theme" files/parameters.
The intent is to add an example PR that shows when to use config point, how to configure it, write documentation for it etc.
* fix(OHIFv3):Overlays were broken.
Adds a retrieveBulkData to elements containing BulkDataURI so that
anyone display the data can retrieve the required information.
* fix(OHIFv3):Added a call in the wrong spot, removed it.
* docs(OHIFv3):Added some documentation as requested
* feat: update to prerelease of WADO Image Loader, add copy plugin to pull dist/dynamic-import into OHIF
* fix: Set empty public path
* perf: Add webpackPrefetch tags to lazy loaded components
* Switch to using webpack alias to use dynamic import version of WADO Image Loader
* fix lockfile
* prevent polyfilling zlib
* bump to wado image loader 4.0.3 with fix for public path
* Rebased to have just the static view changes
* Changes based on the PR
* Couple more changes for the PR
* Removed an extraneous log
* Fix the study worklist display when returning to the page
* Added some documentation on the static wado data source setup, and a
bounds check change on the Queue test which was failing
* PR updates - change the undefined study description to '' and remove the aws deploy
* Fixed the e2e tests to actually pass/fail correctly on actual results
* feat: Add OpenID Connect support, speed up docker rebuilds
* fix: Switch Google Cloud API URL to v1
* chore: Remove redux-oidc and use our own components instead
* Added translation for various react components in OHIF-v3
* Added a test language for debugging- test-LNG
* Added copy for test language to not get overwritten
* fix: update DICOMSR and Measurement Panel copy to use L/W
* functional viewport
* support the active viewport for snapshot
* Support empty viewport case
* bump cs-tools to pick up misc. fixes
* fix: prevent app from blowing up when snapshot modal is opened
* fix: use superscript tag to indicate ellipse is mm squared
* fix: update measurement item to allow us to specify html in MeasurementItem display text
* Update all the icons
* Turn off global tool sync; watch as the world burns
* Shift a bunch of things around so we can start tracking/setting per element
* ToolBarService to initiate one of three different calls; callback passed to all button types
* SplitButton and Toolbar Button to use new `onInteraction` prop and new toolbar state
* Changes to toolbar button interface and config
* Fix broken layout selector
* Update SR viewport to activate tools in viewport component
* Duplicate activation logic in measurement tracking extension
* Add alternative/dashed variants for SR Viewport
* pass through "setToolActive" commands for other viewport types
* fix small overlay bugs (no wwwc or scale info)
* Show SpacingBetweenSlices instead of PixelSpacing in patient information dialog
* Fix prop-types
* Update tracked viewport to have alternative tracked styling
* alt styling for SR viewports
* Update to support isLocked + isRehydratable
* fix broken logic
* fix broken logic
* switch icon style
* fix icon styles
* hover and click to start flow
* expedited workflow when data is not dirty (just after SR hydration)
* fix: setting elliptical roi tool
* fix arrow annotate dialog
* fix: do not show learn more button for now
* remove dead code
* simpler cache invalidation
* simpler cache invalidation part 2
* Fix for unable to spand study cards on separate pages
* fix: viewport grid area top padding should align with sidepanel gap
* fix: don't wrap split button list item text
* fix: cine player moz/chrome styles
* fix: split button arrows
* fix: tighten toolbar and splitbutton styles
* chore: clean up worklist sort logic
* chore: remove lingering debugger statements
* fix: order of arguments on `MeasurementService.remove` calls
* fix: ensure report is dirty when intial measurements are added
* Update all the icons
* Turn off global tool sync; watch as the world burns
* Shift a bunch of things around so we can start tracking/setting per element
* ToolBarService to initiate one of three different calls; callback passed to all button types
* SplitButton and Toolbar Button to use new `onInteraction` prop and new toolbar state
* Changes to toolbar button interface and config
* Fix broken layout selector
* Update SR viewport to activate tools in viewport component
* Duplicate activation logic in measurement tracking extension
* Add alternative/dashed variants for SR Viewport
* pass through "setToolActive" commands for other viewport types
* fix small overlay bugs (no wwwc or scale info)
* Show SpacingBetweenSlices instead of PixelSpacing in patient information dialog
* Fix prop-types
* Update tracked viewport to have alternative tracked styling
* alt styling for SR viewports
* Update to support isLocked + isRehydratable
* fix broken logic
* fix broken logic
* switch icon style
* fix icon styles
* hover and click to start flow
* expedited workflow when data is not dirty (just after SR hydration)
* fix: setting elliptical roi tool
* fix arrow annotate dialog
* fix: do not show learn more button for now
* remove dead code
* simpler cache invalidation
* simpler cache invalidation part 2
* Fix for unable to spand study cards on separate pages
* ohif-329: increase fetch limit when paginating more than 101 studies
* ohif-329 cr update: use offset approach
* ohif-329: remove logs
* ohif-329: add comment
* ohif-329: use cachemap approach
* ohif-329: update total calculation
* fix: settings/about menu should appear over study list filters
* fix: about menu positioning for viewer template
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* ohif-298: use new select in pagination
* ohif-298: add menu placement
* ohif-298: update border
* ohif-298: fix sticky menu
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* ohif-333: add component foundation
* ohif-333: add expandable content and mocked data
* ohif-333: improve ListMenu component for the new toolbar button and add radio behavior
* ohif-333: add click outside behavior and update primary and secondary props
* ohif-333: separate classes from markup
* ohif-333: fix layout issues
* ohif-333: extract window level component
* ohif-333: update component returns
* ohif-333: update chevron thickness
* ohif-333: remove is active prop
* Delete lerna-debug.log
* ohif-333: clean toolbar and use example in ui package
* ohif-333: update styles to avoid word break
* ohif-333: fix ui package build
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Remove trailing zeroes from patient age
* WIP reject + remove displaySet.
* ohif-316: Update DICOM SR thumbnail design to include a delete action (#1948)
* add "supportsReject" to netlify config
Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* ohif-323: add cineplayer flow
* ohif-323: improve toolbar flow of cine
* ohif-323: improve cine styles
* ohif-323: use toggle instead of set
* ohif-323: add compatibility comment
* ohif-323: move cine logic to command
* ohif-323: cr update
* ohif-323: remove typo and update svg title
* ohif-323: remove log
* ohif-323: update props and remove dead code
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Use path instead of alias
* Add missing pacakges
* Use path in viewers
* Use path in contextProviders
* Add base to config
* Add conditionals for window
* Copy config to avoid breaking build
* Update and lock versions
* Update lock file
* Remove scaling config
* Fix broken versions of react date
* Fix broken dev
* ohif-301: add sorting to work list series
* ohif-301: clearadd series date to qido
* ohif-301: add series date to qido
* Update qido.js
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* workflow changes
* Cherry pick OHIF-310 into this PR.
* fix label bug and dead code
* remove comment
* Wire up CreateReportButton
* fix additionalFindingTypes + save interaction
* Remove unused createReportAsync call
* stub for report hydration prompt
* Update PR
* Remove debuggers
* push updated code
* Push updates
* push
* fix sidebar save
* enable tracking of new study or series
* fix for duplicate created report series in sidebard
* fix for unexpected viewport dialog after visiting study list then a new study
* Fix for hydration not marking multiple series as active
* Reviewer changes.
* Respond to final review comment, add series description setting for export.
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
* Create TooltipClipboard component
* basic doc page for TooltipClipboard
* enable clipboard tooltip for specific rows
* wrap component with tooltip clipboard
* remove logic from ui component
* set clipbboard message
* minor refactor to add a delay to show the tooltip clipboard
* delay to hide comment
* Remove titles which were interfering with tooltips
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* fix: Use same config for branch deploys as for deploy previews
* chore: remove unnecessary duplicate build-deploy-preview.sh file
* fix: Attempt to workaround Netlify cache issues for Lerna repos
* chore: Remove useless debug file
* fix: try to make Gatsby less slow
* No more setting on debounce, jumpToMeasurement service set up.
* Fix bug causing a race condition sometimes if you click super fast.
* Optimise rendering of Tracking viewport slightly.
* element => targetElement
* Remove complete TODO
* Respond to reviewer comments.
* Fix e2e workflow.
* Fix regression that removed highlighting on jump to.
* Make sure jump to works from panel as well as viewport.
* Fix typo and remove debugger.
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* WIP
* Reset viewport grid on mode switch.
* Make lifecyclehooks distinct from modules. Add needed SR hydration state on creation.
* Update extensions/cornerstone/src/init.js
* Remove unused REMOVE_MEASUREMENT listener.
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* WIP
* double click to maximise implemented at the viewport grid layer.
* Remove memory of cached layout when the layout is changed, or a different displaySet is set.
* WIP fix double click for cornerstone.
* Update CST
* Prevent maximising when double clicking the action bar
* Update extensions/dicom-sr/src/OHIFCornerstoneSRViewport.js
* Apply suggestions from code review
* Fix conflicts.
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Only process SR on consumption of viewport.
* Hide handles whilst moving + correct hide handles on hover.
* Up CST version
* Update cst
* Remove added cornerstone viewport checks
* OHIF-202: Add tooltip for locked/unlocked SR viewport icon
* fix edit margin
* Update platform/ui/src/components/ViewportActionBar/ViewportActionBar.jsx
* Apply suggestions from code review
* Fix tooltip (func comp)
* Don't render the `0` of data.length used to check a render condition
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* OHIF-252: "Recent" and "All" tabs should be disabled if there are no studies on their category
* fix button props and avoid onClick on disabled state
* Add dynamic default sorting
* Use different approach to sort
* Switch strategy to one that works even when filters are applied, but sort is not (there is no dicomweb sort/orderby)
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
* add group hover for borderColor
* measurements action buttons hover state
* fixes and button/buttongroup/iconButton refactor
* OHIF-161: Fix Tracked/Untracked Text in Thumbnail's Tooltip
* OHIF-254: Format SR series date
* OHIF-167 - Fix Study Date Time format
* OHIF-249: Fix viewport border thickness and action bar min height
* pass viewportIdentificator to SR Thumbnail
* show tooltip when hover over the SR thumbnail
* OHIF-170: Display tooltip when hovering over an untracked series in the Viewport Action Bar
* Undo accidental date change
* Sneak in "Create Report" messaging for createReport notifications
* Fix text clipping
* Add no-select text styles for action bar, thumbnail, and thumbnail no image (sr)
* fix for OHIF-162
Modified to remove Viewport Identifier. Text now only reads: “Structured Report”This was partly to address a bug where the Viewport Identifier was incorrect for all but the first displayed SR. Component API changed for ThumbnailNoImage to accomodate any generic “modalityTooltip”
* Some ViewportPane resize magic
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
* Set measurement as active
* Add basic dialog component
* Update styles and prop types
* Jump to image
* Update dialog
* Format date
* Update summary to use primary modalities
* delete empty studySummary page
* add missing PropTypes import
* fix for accidental sync'd viewports
* CR Updates
* CR Update avoid cache of measurements
* Use get measurement
* Add comment to edit function
* Remove request and merge modalities from series
* Update dependency: react-cornerstone-viewport@2.3.9
react-cornerstone-viewport
* @ohif/extension-cornerstone: 2.3.8 → 2.3.9
* @ohif/extension-dicom-sr: 2.3.8 → 2.3.9
* Update extensions/measurement-tracking/src/panels/PanelMeasurementTableTracking/index.js
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Add debugs
* remove console.debug
* Update frameindex to imageindex
* Use new rcv debounced function
* Fix hovering
* Update dialog text
* Dismiss dialogs on esc
* Update dependency: react-cornerstone-viewport@3.0.0
react-cornerstone-viewport
* @ohif/extension-cornerstone: 2.3.9 → 3.0.0
* @ohif/extension-dicom-sr: 2.3.9 → 3.0.0
* OHIF-237
* remove console.debug
* Remove dead code brought in from rebase
* EmptyViewport should not display a message
* Remove more dead code from rebase
* fix variable naming
* remove unused hook
* bump yarn lock
* formatting
* Add arrow dialog
* Filter based on trackedSeries
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Viewport letter only in multi-viewport layout.
* If SliceThickness not available print N/A
* Create displaySet in local session on SR generation.
* Jump to thumbnail when a new displaySet is added with the madeInClient property.
* Check if scrollIntoView exists.
* Viewport letter only in multi-viewport layout.
* If SliceThickness not available print N/A
* Create displaySet in local session on SR generation.
* remove empty line
* remove console log
* Give storeMeasurements an onSuccess handler instead of always creating dataSets.
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Create basic structure for Viewport dialog provier and Dialog component
* Implementation of a UIViewportDialogService
* Update viewportDialogProvider docz
* Create example of use of UIViewportDialogService
* fix pagination size
* clean up, start a very basic route configuration
* quick navigation between routes
* configure webpack to read .env variables
* export studylist filter
* split studylist filter into a component
* minor fix in studylist pagination
* update studylistfilter imports
* create studylist container with study list content
* moving file
* study list filter doc page
* catch change in ui-v2
* fix: 1px gap that shows text underneath
* Shift to routes folder
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Initial code changes for StudyBrowser
* StudyItem component basic strucure
* Adding new icon
* Updates to get StudyItem working
* Small fix on side panel open header
* Adding new icons
* Thumbnail List
* ThumbnailSR WIP
* Thumanil WIP
* Export new components into ohif/ui
* Updates on style
* Update ThumbnailSR style
* Margin updates
* MAke it scrollable
* Make it scrollable
* Style updates
* Fixing tooltip
* Tunning the mock data and testing scenarios
* Update mock data
* make all studies collapsed
* small fix on tooltip
* Removing empty mdx files
* Updating viewer docz page
* Style updates
* Update button font-size
* Fix: Make cancel button only visible on hover
* Fixing callouts
* Fix eslint
* feat: StudyListTable Refactor
* feat: StudyListTable + Props Refactor
* fix expanded rows handler
* update and fix study list doc page
* fix date format
* use moment to format date
* expose new components
* fix study list expanded row
* Export and Create doc page for Pagination
* API Definition, Export and Doc page for StudyListTable
* StudyListTableRow
* use real example to mount study list
* move files
* temporary change study list (viewer) structure
* fix studyList
* remove unused files
* remove file
* remove unused package
* PR fixes
* Remove console.dir
Co-authored-by: Gustavo Lelis <galelis@gmail.com>
* Creating InputGroup
* Updating Views with new InputGroup
* Creating Docz for InputGroup
* Fixing eslint issues
* Renaming inputGroup props naming to be more generic.
* Custom Select component
* Including inpot section
* Adding missing import sections on docz
* Change cursor once is disabled
* update date range color font
* feat: Date Range wrapper component
* fix yarn issues
* add calendar icon
* date range css styles
* date range fixes
* fix propTypes warning
* fix clear method, defaultProps & onChange method
* update inline styles to use tailwind classes
* date range documentation page
* minor refactor
* feat: Data mocking for studies
* feat: Data Mocking for Study List
* fix empty study position
* rename variables for numOfStudies
* fix studies query
* remove alert :|
* minor refactor
* split utils and refactoring
* refactoring -- format, clean up icons, mdx mock
* Inital changes for study list filters
* Style updates on filter
* Small style changes on filter
* Style changes updates on Input and Label and finish fitler
* Refactor on study list filter
* Remove not used callbackFunction
* Small style change
* Adding underline on Learn more link
* Make sure does not show sortable if have no results
* Some style polish
* Fixing margin on filter
* Adding inherit as color on buttons
* Adding inherit on learn more button color
* Addin border with opacity
* Initial code for header
* Basic implementation for the header
* Updating icons
* Fix conflicts after latest changes on base branch
* Smnall refactor on header
* Small text-size change
* Remove comment
* Remove link from OHIF logo
* Fix cog/settings icon
* New icons and old strucure of OHIF ui v1
* Export icon
* Removing wrong import and fixing some exports
* Fixing svg loader and svg images to fullCurrent
* Small fixes on docz
* Remove repeated icon
* Update other components to use Icon
* Update platform/ui/src/components/Icon/icon.mdx
Co-Authored-By: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
* Fixing callouts
* Move icons to assets and fixing layout on iconButtons
* Fix path of icons
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
Co-authored-by: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
When we have multiple SEGs/RTSTRUCTs we intend to load the most recent
by default.
BREAKING CHANGE: 🧨 However we start to load once the first set of metadata arrives. We need
to wait until all series metadata is fetched.
✅Closes: #1715
Co-authored-by: James Petts <jamesapetts@gmail.com>
* fix: 🐛 Load default display set when no time metadata
Load default displayset (first item in the array) when no series date or
series time availalbe
✅Closes: #1683
* Add batch update
* Fix tests.
Co-authored-by: James Petts <jamesapetts@gmail.com>
* Add segment part 2 (jump to frame and visibility toggle)
* Cr updates
* Filter displaysets with images
* feat: 🎸 Seg jump to slice + show/hide
Co-authored-by: James Petts <jamesapetts@gmail.com>
* Feat #1130 Adding support for downloading and zipping files
@ This is a combination of 12 commits.
- Feat #1130 Initial Commit
- Feat #1130 Adding support for hierachical lists
- Feat #1130 [WIP] Adding support for downloading and zipping files
- Feat #1130 Adding support for hierarchical folder structure study, series, instances on generated zip file
- Feat #1130 Adding unit tests and addressing code review feedbacks
- Feat #1130 POC (adding module to support on progress handling)
- Feat #1130 Improving logic from progress tracking utils
- Feat #1130 Renaming module with progress tracking utils
- Feat #1130 Beta version of Progress Tracking utils
- Feat #1130 Adding unit tests for Progress Tracking Utils
- Feat #1130 Documenting public methods from progress tracking utils module
- Feat #1130 Adding support for download and zip progress reporting
* Feat #1130 Addressing code review feedback
* Feat #1130 Preventing multiple downloads from executing at once
* Feat #1130 Improving error message for concurrent downloads
* Remove downloadAndZipSeriesOnViewports
Co-authored-by: James Petts <jamesapetts@gmail.com>
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Rebase on master.
* format format format
* add basic extension parts
* Updated yarn lock
* Fetch derived/referenced displaysets in sidepanel
* Add buttons, expose seriesDescription, write notes for Danny.
* Add growcut tool extention. -> Move to a seperate repo.
* Change some text fields.
* expose dialog provider
* hide draggable area
* No pointer events for now; need to revisit
* Don't filter seg from the outset for now
* fiddling about
* fix path to series data
* fix logic to determine next available labelmapindex
* Ability to swtich between labelmaps
* Return a promise so we can make sure our labelmap is loaded before pulling metadata
* Better UI to toggle labelmaps
* Fix accidental untoggle of active labelmap for ui
* Remove brush tool from cornerstone extension
* Add cstools in preInit for seg extension
* Add buttons for seg magic
* Hide the measurements panel for now
* Slightly better seg/scissor icons
* Add eraser
* ability to switch segments
* seg color / switcher
* Fix vtk labelmap cache.
* sidepanel should scroll if there's overflow
* Use a fancier range slider
* Slightly prettier buttons
* Push in progress
* A bit more reactive; handle no-meta
* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0
* chore: kickstart preview
* Fix conflict issues
* Refactor panel
* Isolate increment functions
* Wip segment table
* Hide selector and add scroll to segmentation
* Increase width of segment description
* Hide not used items
* Add new select for segmentations
* Align ui
* Fix default segmentation
* Fix broken import test
* Get measurements panel back and add spacing to grouped buttons
* Hide brush and selector and refresh when switching segmentations
* Add pointer events back and fix broken tests for measurement table
* Update segment list when switching humbnails
* CR Update: Minor UI adjustments
* CR Update: Set active segment
* Move components to components folder
* Add new settings ui
* Integrate configuration
* Improve styles
* Float numbers
* Improve css
* Refresh settings menu if side panel changed
* Fix settings rendering logic and remove comments
* Extract components
* Remove not used tools
* Remove non used extension
* Use style variables and remove comments
* Remove non used dep from lock
* Remove tools
* Remove segmentation from toolbar
* Add todo and brushradius from config
* Fix packagejson growcut import
* Remove webpack config already defined in parent
* Update package json description
* Change component name to british english to us
* Improve prop types
* Rename cornerstone label map event
* Scope css
* Extract and add doc to helper
* Update jsdocs for getDerivedDatasets
* Add proptypes and cr updates
* Update tablistitem proptypes
* config is readonly, rollback destructuring
* Remove event for side panel
* Add jsdocs for util
* Extract getimageid to studymetada
* Use ohif log instead of console
* Remove specific style from side panel
* Fix default props for brush radius
* Descructure configuration props from settings component to avoid invalid props
* Update proptypes to be required (settings)
* Update readme
* Remove commandsmodule
* Get configuration module inside the component
* Set selected segment
* Rename extension and use modality to filter
* Fix for failing tests (#1423)
* hello world
* Finish rebase for Igor.
* Re-fix cornerstoneTools version that got messed up in merge.
* Fix reactivity of isDisabled, write implementation for the SEG panel.
* Nuke yarn.lock to stack CST to 4.12.0
* Remove debugger statements.
* WIP consume RTSTRUCT
* Doc API and add endpoints.
* Rebase on SEG PR.
* Update DICOM Keyword variables.
* Fix metadata vars format
* Add basic RT panel along with configuration
* Wire up configuration with settings component
* Mock structure set tables
* Improve design of settings
* Integrate list of contours
* Extract panel section
* Filter by seriesuid
* Fix slow settings
* Add jump to image
* Fix expandable items
* Improvements and CR update
* CR Update: Remove google config
* CR Update: Remove erase tool test
* CR Update: Remove instance
* CR Update: Fix issue with undefined prop
* CR Update: Update yarn lock
* Hide actions of structure item
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
* Show series in Study Browser before their metadata is retrieved
* Switch to decreasing for loop after code review (thanks @ckedar!)
* feat: Limit concurrent series metadata requests (#1581)
* Limit concurrent series metadata requests
* Switch to decreasing for loop after code review (thanks @ckedar!)
* Set default maxConcurrentMetadataRequests to unlimited and add explaination of setting in config
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* Address comments from code review
* Comment out misbehaving test
Co-authored-by: Kedar <ckedar@gmail.com>
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
* async load cornerstoneWADOImageLoader chunk
* Lazy initializing of CornerstoneWADIImageLoader - delayed till Viewer creation
* Async loading of react-vtkjs-viewport
* withCornerstone HOC to wrap routes requiring CornerstoneWADOImageLoader initiazation
* removed dead code in comments
* initWeWorkers is no more. Remove al its references.
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* fix: Add support for single entries in SequenceOfUltrasoundRegions. More than one region will need lower-level changes
* Update platform/core/src/utils/metadataProvider/getPixelSpacingInformation.js
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Avoid un-necessary redux state update for frequent actions
* Avoid un-necessary re-render when no change in props
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
* Added verification on Before hook to avoid navigating again to viewer page
* Removed unecessary screenshots and duplicated test cases
* Navigation Fix for HTML extension and improved Flip button verification
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Rebase on master.
* format format format
* add basic extension parts
* Updated yarn lock
* Fetch derived/referenced displaysets in sidepanel
* Add buttons, expose seriesDescription, write notes for Danny.
* Add growcut tool extention. -> Move to a seperate repo.
* Change some text fields.
* expose dialog provider
* hide draggable area
* No pointer events for now; need to revisit
* Don't filter seg from the outset for now
* fiddling about
* fix path to series data
* fix logic to determine next available labelmapindex
* Ability to swtich between labelmaps
* Return a promise so we can make sure our labelmap is loaded before pulling metadata
* Better UI to toggle labelmaps
* Fix accidental untoggle of active labelmap for ui
* Remove brush tool from cornerstone extension
* Add cstools in preInit for seg extension
* Add buttons for seg magic
* Hide the measurements panel for now
* Slightly better seg/scissor icons
* Add eraser
* ability to switch segments
* seg color / switcher
* Fix vtk labelmap cache.
* sidepanel should scroll if there's overflow
* Use a fancier range slider
* Slightly prettier buttons
* Push in progress
* A bit more reactive; handle no-meta
* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0
* chore: kickstart preview
* Fix conflict issues
* Refactor panel
* Isolate increment functions
* Wip segment table
* Hide selector and add scroll to segmentation
* Increase width of segment description
* Hide not used items
* Add new select for segmentations
* Align ui
* Fix default segmentation
* Fix broken import test
* Get measurements panel back and add spacing to grouped buttons
* Hide brush and selector and refresh when switching segmentations
* Add pointer events back and fix broken tests for measurement table
* Update segment list when switching humbnails
* CR Update: Minor UI adjustments
* CR Update: Set active segment
* Move components to components folder
* Add new settings ui
* Integrate configuration
* Improve styles
* Float numbers
* Improve css
* Refresh settings menu if side panel changed
* Fix settings rendering logic and remove comments
* Extract components
* Remove not used tools
* Remove non used extension
* Use style variables and remove comments
* Remove non used dep from lock
* Remove tools
* Remove segmentation from toolbar
* Add todo and brushradius from config
* Fix packagejson growcut import
* Remove webpack config already defined in parent
* Update package json description
* Change component name to british english to us
* Improve prop types
* Rename cornerstone label map event
* Scope css
* Extract and add doc to helper
* Update jsdocs for getDerivedDatasets
* Add proptypes and cr updates
* Update tablistitem proptypes
* config is readonly, rollback destructuring
* Remove event for side panel
* Add jsdocs for util
* Extract getimageid to studymetada
* Use ohif log instead of console
* Remove specific style from side panel
* Fix default props for brush radius
* Descructure configuration props from settings component to avoid invalid props
* Update proptypes to be required (settings)
* Update readme
* Remove commandsmodule
* Get configuration module inside the component
* Set selected segment
* Rename extension and use modality to filter
* Fix for failing tests (#1423)
* hello world
* Finish rebase for Igor.
* Re-fix cornerstoneTools version that got messed up in merge.
* Fix reactivity of isDisabled, write implementation for the SEG panel.
* Nuke yarn.lock to stack CST to 4.12.0
* Remove debugger statements.
* fix: bump cornerstone-tools version to address toFixed issue
* test: force tests for MISTER^MR to navigate to study directly
* test: remove eraser tool test
* test: count is off by one
* test: don't save SR state for the time being
* test: disable more tests
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Update JSON CI
* Update casing of import.
* Fix jump for SR.
* Fix unit tests for measurements service
* Fix json CI test.
* fix: update yarn lock
* Fix local non-encapsulated pdf view
* CI updated to new sucess message.
Co-authored-by: Danny <danny.ri.brown@gmail.com>
* Replace class with className
* Start implementing UIDialogService
* Including UIModalService on dicomStorePicker
* Cleanup
* Remove unecessary divs
* Remove props not used
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* WindowLevel preset code changes
* Remove localStorage code as its already being saved and some small refactor on reducer/action
* Creating unit tests for preferences reducer
* Fix cypress after class naming change
* Make hidden false as default for tab components
* Remove addUserPreferences
* Small refactor to use commandsManager from getCommandsModule instead of getting it from App.js
* fix: Combined Hotkeys for special characters
* add record method to hotkey manager
* fix record plugin
* remove unused component
* add record to modal props
* rename record method
* replace handlers to use hotkeyRecord
* fix combined keys
* change expected result count from 18 to 17
* autoformat
* Remove duplicate test, that was testing the wrong things; fix label; update configs
* Revert "Remove duplicate test, that was testing the wrong things; fix label; update configs"
This reverts commit 4292f4fe67351962d61cae623b920dcbd87dd71d.
* Fix the record plugin's registration
* fix exposed record method usage
* adding logging for info level items
* Hotkey definitions don't need to be globally reactive; use localstorage/appconfig as sources of truth; not redux
* Tidy up test
* Remove unused code from UserPreferencesForm
* Log info when we run a command
* fix hotkey preference restore
* use application configured hotkeys if there are no user preferred
* Avoid logging circular ref
* Fix callouts
* Fix small issue with array
* Fix langua issue after refactor and merge
* Refactor on recordCurrentCombo as Rodrigo did before
* Separating components in 2 files
* WIP Refactor to simplify the user preferences and move into each form the save and controll functionalities
* Remove context
* Remove unused import
* Initial work on Field treatment
* Refactor General preferences
* Small refactor removing type from HotkeyField
* small update on style
* Refactor and layout fixed
* Make hotkeys preferences working with old hotkeys row
* Move error handling out of hotkey row/input component
* WIP custom form
* Moving validation function to component
* Exposing hotkeyRecord as it does not depend on HotkeyManager Class
* Making hotkeyField as much detached possible from parent component
* Small refactors
* Refactor on user preferences
* Clean up into the changes
* Small fix to let save working
* Style finish
* move about docs into about folder
* Fix double tap on single keys
* Style refactor
* Remove log
* Fix log issues on unit tests
* Fix unit test breaking on ohif/core index
* Fixing hotkeys unpause unit test issue
* Rename file to adopt lowercase
* Rename file to adopt lowercase
* Fixing callouts
* Big refactor miving some of the components into viewer and creating small components into ohif/ui
* Typo on folder name
* Updating ohif ui docs
* Remove comments
* Fix binding of combo keys
* Fix some cypress tests failures
* Fixing onCancel button
* Fixing e2e tests
* Small style update
* Fixing unit tests failing after fix issue
* Remove some not used code
* Remove left over after debug
* Adding prevent default on hotkeys events
* Fixinf existing hotkeys validator with 3 keys pressed
* Exposing hotkeys as root level on ohif-core
* Clean up
* Exposing all availableLanguages with labels and fixing an issue on language switcher
* Fixing e2e cypress tests
* Preveinting some simple errors
* Treating error once we try to set hotkey definitions
* Adding ui notification on setHotkeys errors
* Implementing a service queue request to hold until functions are implemented
* Making sure toFixed is only called on Numbers
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
Co-authored-by: Gustavo André Lelis <galelis@gmail.com>
* feat: 🎸 MeasurementService
Work in progress...
* Remove cornerstone tools import
* Second iteration
* CR Update: Add update / added events example
* Add new props to measurements
* Update event log
* Add new measurementid to annotation
* Add context support
* Add value types
* Add area
* Add todo
* Wip measurement to annotation map
* Change points representation
* Add props to annotation mapping
* Add tests
* Extract formatter from init and add tests
* Sketch matchers
* Fix events and valuetypes imports
* Remove context support
* Rename formatter to mappings
* Sketching source and source definitions
* Adjust matching criteria in addOrUpdate
* CR Updates: Extract private functions and rename variables
* Fix broken tests
* Add more measurement service tests
* Update broken mapping tests
* Update test description
* Update getAnnotation to get mapping based on def and source
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* chore: init lesion-tracker extension
* chore: dev build for lesion-tracker extension
* fix: a more appropriate library name
* chore: fix script naming
* Remove tash data from redux storage after updates
* Imprelemnted more unit tests
* Remove missing comment
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* fix: Set VTK viewport as active by interaction
* feat: listen for vtkscrollevent in wrapper component
* fix: definitions can skip empty storeContexts key
* hoc to set/pass in commandsManager
* Bump minimum react-vtkjs-viewport version to leverage new event
* Simplify to use onScroll event instead of passing down commandsManager to base component
* fix: make sure we include @JamesAPetts bug fix
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
This dependency depends on the `favicons` library which depends on
`sharp` which depends on a native library.
This complicates the build process as the library is built from source
because there's no binary available for my macOS Catalina
installation. As this is a common developer setup I expect others to
run into this issue as well, which is why I opted to fix this issue.
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* fix: download tool fixes & improvements
* fix filename error
* Create variable to track erros
* Fix small console error
* Fix all conflicts and merge changes from latest master with this PR's improvements
* Small improvement on select and textinput labels
* Add new icon for unlink
* Refactor on download image modal
* Adding loading screen
* Fix translation issue
* Fixing aspect Ratio and E2E tests
* Allow empty value without setting to 0
* Remove eslint comments
* Fixing typos
Co-authored-by: Gustavo André Lelis <galelis@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* 1316 - E2E tests for /local
* fix test title
* update yarn.lock
* Increased timeout for thumbnails
* Removing PDF file test from script-tag server
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* refactor: 💡 Clean up JSON launch with DICOMWeb server
Clean up JSON launch with DICOMWeb server
✅Closes: #1387
* Remove test file
* parse seriesinstanceuids in query
* Add default studies
* Remove test file
* Cleanup retrievedata changes
* Set active server
* Add ability to configure Google Cloud Healthcare API endpoint.
* Fixed bug in script.
* Fixed PR remark.
* Set Healthcare API endpoint in proper place.
* fix: 🐛 Make Plugin switch part of ToolbarModule
Closes: #1241
* Move setCornerstoneViewport command into cornerstone extension
* Exposing extensionManager into extension's get modules functions
* Remove Plugin switch
* Updating set cornerstonelayout to work on VIEWER context
* Creating a customComponent for 2D MPR button
* Use extensionManager to show or not buttons
Adding isHidden option into toolbarModules
* Make buttons hidden depending on extension registration
* Fix unit test after changes on extensionManager
* Remove workaround for extensionManager
* Use studyMeatadataManager and remove TODO's
* Remove storeContext not needed
* Moving Exit 2D MPR into cornerstone extension with VTK context
* Remove PluginSwitch files
* Fix E2E tests
* Adding cypress screenshots into gitignore
* Remove extensionManager from getModuleFn functions and moving CustomComponent for VTK button to VTK extension
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* E2E Tests: Save Measurements Functionality
* Moving test file to PWA only. Script-tag doesn't have the required Study
* Removing data-cy selector from cornerstone toolbar
* feat: 🎸 Configuration so viewer tools can nix handles
Adds a key to cornerstone configuration that allows to toggle on/off
handle rendering
Closes: #1223
* Update extension docs
* Update doc
* docs: include hideHandles configuration in our configuration docs
* chore: default to hiding handles for annotations
* chore: switch to drawHandlesOnHover to mimic legacy viewer functionality
* Flip logic for drawHandlesOnHover; reverse of hideHandles
* Don't hide the handles of ellipse or rectangle roi
* invert check
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* Move DICOMSR to @ohif/core
* refactor: 💡 Move DICOMSR code to @ohif/core project
We've just merged support for DICOM Structured Reports. Today, support
for this feature lives in the @ohif/viewer project in it's lib folder.
Ideally, it should be moved to @ohif/core and given a clear public API
and unit tests.
Closes: #1282
* Update imports
* CR Update: Update imports
* feat: 🎸 Expose extension config to modules
Currently, only the preRegistration hook receives the extension's
configuration as a parameter. Providing getModuleFn's with the
extension's configuration, and all lifecycle/modules with the
application's configuration as rootConfig should open the doors to more
configurable extensions.
Closes: #1268
* CR Update: Pass extension and service config through extension manager preinit/getmodule
* CR Update: Remove appConfig from servicesManager
* CR Update: Remove appconfig variable
* ci: update executor and browser flag for circleci orbs
* ci: browser flag when running percy/ci tests
* ci: limit ourselves to the executors defined by the cypress orb for now
* fix: Set VTK viewport as active by interaction
* chore: upgrade cypress to latest
* Revert "fix: Set VTK viewport as active by interaction"
This reverts commit b6e174c2def9d8f688a54d32053679788b9aaf76.
* ci: add record flag for master cypress runs
* ci: simplify cypress orb tasks now that cypress@3.8 uses electron w/ chromium 78
* ci: remove video false flag
* ci: drop browser flag
* ci: store video artifacts
* fix: Set VTK viewport as active by interaction
* chore: upgrade cypress to latest
* Revert "fix: Set VTK viewport as active by interaction"
This reverts commit b6e174c2def9d8f688a54d32053679788b9aaf76.
* ci: add record flag for master cypress runs
* Tests for routes: PT/CT json, studies, series, frames, metadatas
* Fix based on reviews and JSON file for PT/CT Study added
* chore: revert to remote JSON file
* chore: delete PTCTStudy.json file
We can circle back to this approach when/if we have issues. No need to hold-up this PR. My fault on this one.
* E2E Tests: Download Image File Modal
* CI fix
* Fixes for PR comments
* Small change just to check CI behavior
* Fix for CI failure: comparing classes instead of image src
* Fixed Download button test and blocked Download Dialog event
* Deleting file ConnectedViewportDownloadForm.js
This file was not supposed to be created by this PR. It was already deleted by another user on Master branch.
* Removing wrong import line
* Fixes based on PR comments
* Fixes based on PR comments
* test: remove assignment to window
* feat: 🎸 DICOM SR STOW on MeasurementAPI
Closes: #758
* feat: 🎸 Adding the dataExchance from DICOM SR
* feat: 🎸 Fix some issues and get the retrieve measurements working
* feat: 🎸 Preventing measurement tool helpers to broke because the data is not Number (it comes as string from dcmjs)
* feat: 🎸 Adding a button to start testing SATE functionality
* feat: 🎸Small fixes into the code
* feat: 🎸 MAke sure we get latest SR in the study, even on lazyLoad mode
* Revert "feat: 🎸 Preventing measurement tool helpers to broke because the data is not Number (it comes as string from dcmjs)"
This reverts commit 4b3a1efb5810487d2319826fd59c03d779882b5e.
* feat: 🎸 Make sure after sync we update the viewports and also that annotation tools are set to passive, so it can be drawn in the viewports
* feat: 🎸 Remove console logs and start using OHIF.log
* feat: 🎸 Refactor measurement table to use Snackbar service of messages and make sure we only show save button if server type is dicomWeb
* feat: 🎸 Refactor to remove mocked wadoRoot and use server
* Fix to expose error once we can't save the SR
* Update DCMJS into latest dev version
* Update dcmjs with latest fixes
* Fix PR callouts
* Logging error on MeasurementReport creation
* Preventing from breaking on non supported tools and also warning that some toolType is not sopported
* Small error message update
* Expose better the errors and when we have unsopported tools into the measurements
* Renaming variable
* Expose dcmjs tool support check
* Change the way we warn the unsupportedTools
* Adding style to the button
* Small change on button style
* Fix git conflicts
* Fix after merge with latest master
* Fix after merge with master, btn was not clickable
* Fixing callouts
* Adding util functions into files and refactor with JSDocs
* Refactoring code, adding some basic JSDocs
* Bump dcmjs with latest version and fixes
* JSDocs and small refactors
* yarn lock file after dcmjs update
* Remove unused parameters
* Registering a plain copy of server into measurementAPI
* Small refactor
* Start changing from toolType to toolName
* Rename a function to get instanceMetadata
* Adding error if server is not DICOMWeb on retrieve
* Move snackbar outside of UI component and use UINotificationService
* Refactor and JSDocs
* Small fixes on JSDocs (style)
* Remove unused import
* Improve JSDocs on MeasurementApi
* Remove refactor leftover
* Improve JSDocs and propTypes
* JSDocs and small refactors
* Fix ExtensionManager bug and add test to bandaid
* Add tools configuration to extension manager preinit
* Fix reducing of configs
* Merge internal with external configs
* Merge internal with external configs
* Remove dialog from init in measurementstable
* Testing injected configuration
* New way to set config
* Add new prop to dialog provider to allow disabling last position
* Remove code from preinit in cornerstone
* Add new prop to dialog provider to allow disabling last position
* Add centralize to dialogs
* Reorder dialogs when adding them
* Fix draggable styles (cursor)
* Remove repositioning methods from labelling flow and remove overlay from labelling manager
* Fix empty array being set in bringToFront
* Add new command to update table and pass commands manager to modules/preinit hook
* Ad UIContextMenu service / factory
* Use new contextmenu service in measurementspanel extension
* Use dialogs for arrow annotate in default
* Remove positioning funcionality from tool context menu
* Add context menu service
* Pass commandsModule to extension
* Update edit description dialog and simple dialog to position relative
* Remove style code from labelling flow and manager
* Remove eventdata from labelling
* Remove labelling code from measurement init
* Add commandsmanager to provider
* Update contextmenu provider and service
* Add touchstart and mouseclick to hide contextmenu
* Hide labelling if click/touch
* Remove labelling and context menu dead code
* Fix undefined bug if ViewerMain grid has no children
* Fix broken prop on context menu
* Update commandsmodule based on master
* Fix broken configuration
* Update script tag config
* Remove cornerstone from toolcontextmenu
* Remove cornerstone from toolcontextmenu
* Split labelling and context menu providers
* Split labelling and context menu providers
* Update test
* Destructure extensions into new array
* CR Update: Move default arrow config to cornerstone instead of default
* CR Update: Fix app configuration props structure
* CR Update: Fix app configuration prop in script tag and extract commands manager from providers
* CR Update: Create custom providers to use commandsManager
* CR Update: Use services directly in measurementspanel
* CR Update: Pass components to providers
* CR Update: Remove position from dialog
* CR Update: fix dialog prop check
* CR Update: Fix comments
* CR Update: Update documentation
* CR Update: Add test default configuration
* CR Update: Add default empy array to extensions
* CR Update: Update i18n configuration all ot match current function configuration
* CR Update: Add defaults to injected dependencies in configuration and extension configuration
* CR Update: Add defaults to configuration with no args
* Update documentation
* CR Update: Add default for tools
* CR Update: Update config object to i18n
* CR Update: spread defaults
* CR Update: Add tool configuration example to cornerstone extension
* CR Update: Add tool configuration to netlify (testing)
* CR Update: Remove netlify config for tools
* CR Update: Rollback changes to i18n to be fixed later
* CR Update: Update documentation and pass whole cornerstone config object instead of tools key
SEE: https://www.conventionalcommits.org/en/v1.0.0/#commit-message-with-both-and-breaking-change-footer
BREAKING CHANGE: modifies the exposed react <App /> components props. The contract for providing configuration for the app has changed. Please reference updated documentation for guidance.
* docs: process docs to include UX Stories requirement
* docs: include note regarding different environments
* Services init
* Remove unused canny logos
* docs: add ModalService diagram
* docs: GIF of notification
* docs: add ui-services page
* docs: simplify ui services call out in the general services docs
* docs: tips and tricks for UI services
* docs: moar pages
* docs: dialog gif
* docs: services in summary/sidebar
* docs: gif examples at top of dialog and notification pages
* docs: add UIModal gif
* docs: details for Dialog Service
* docs: include usage information for ui modal service
* docs: detailed information about our UI Notification Service
* docs: services diagram
* docs: remove unused links
* docs: services example and image
* docs: stubbing extension pages
* docs: UX Stories --> User Cases
* chore: eslint fix
* docs: extensions overview + diagram
* docs: update extensions in sidebar
* docs: extension skeleton and registration info
* docs: copy of maintained extensions table partial in the extensions folder
* docs: swap out old extensions structure for new
* Organize viewports reducers
* Organize viewports actions
* Add local state to store dom node and remove hack
* Comment usage of dom in vtk
* Fix set of enabledElements
* Fix warning in html viewport
* Update docs for state
* Add commandsmanager to commandsmodule
* refactor: Shift ConnectedViewportDownloadForm to extension-cornerstone (#1224)
* refactor: 💡 Shift ConnectedViewportDownloadForm to its own proj
Shift ConnectedViewportDownloadForm to its own project and use local
state to get enabledElement
Closes: #1206
* Refactor connected component to cornerstone component
* Remove builtin behaviour from toolbarrow
* Organize viewports reducers
* Organize viewports actions
* Add local state to store dom node and remove hack
* Comment usage of dom in vtk
* Fix set of enabledElements
* Fix warning in html viewport
* Update docs for state
* Add commandsmanager to commandsmodule
* fix: study list translations
* Don't render until translations are ready
* Try to wait for translations to load
* Use null to render "nothing"
* Try toggling useSuspense off up a layer
* logging
* Remove useSuspense false flags
* DO NOT OPEN A PR WITH IT.
Experimental changes only.
Try to solve issues with useTranslation hooks
#Please enter the commit message for your changes. Lines starting
* Remove unecessary changes
* feat: 🎸 useMedia hook to not use one more prop for upd state vl
* docs: Add license scan report and status (#1161)
Signed-off-by: fossabot <badges@fossa.io>
* fix: 🐛 Fix for JS breaking on header (#1164)
* feat: 🎸 Code review and refact
Revised code based on PRs(variable alias,...). Changed hook for
useMedia. Now, it provides two hooks: one to get displayMediaSize and
other to get Entity(component, objects...) based on displayMediaSize.
Implemented a similar solution for state manager to store
mediaQueryList(s) and displaySize for app.
* feat: 🎸 Fine tunning on mediaQuery value, fixed issue about it
* fix: 🐛 Fixed issue and refactoring
Fixed js exception and also refactoring userPreferences components to
functional component
* fix: 🐛 Code review. Localstorage fix minor bugs
* fix: 🐛 Ensure hotkey lower case always
* fix: translation switcher
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.53.6
- @ohif/ui@0.62.1
- @ohif/viewer@2.8.2
* Add new modal service
* Change serviceManager prop to servicesManager
* CR Update: fix casing and add required proptypes to providers
* CR Update: Improve ohifmodal proptypes
* CR Update: Fix typo in extensionmanager
* CR Update: add default props to service and check service in provider
* Refactor modal provider to better use its own state
* ci: don't build our master branch (#1177)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* Use modal instead of modal context
* Ci/promotable builds (#1179)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Change modal children order
* Ci/promotable builds (#1180)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* Ci/promotable builds (#1181)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* Ci/promotable builds (#1182)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Fix OHIFModal proptypes
* Ci/promotable builds (#1183)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Inline personal access token w/ env var
* Ci/promotable builds (#1184)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Inline personal access token w/ env var
* ci: workaround for sudo limitations
* ci: restore release workflow (#1185)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Inline personal access token w/ env var
* ci: workaround for sudo limitations
* ci: restore release workflow
* Pass services to each module, improve tests
* Add servicesManager test and registerServices method
* Fix key warning of snackbar elements
* Remove netlify-cli; we';ll install this on CI server
* Update staging and prod netlify site IDs
* Clean up NPM_PUBLISH step
* Clean up DOCS_PUBLISH step
* Clean up Deploy workflow
* Custom executor to override cypress config
* Spacing
* Use an existing docker hub image
* Switch to npx instead of digging into npm bin location
* Remove e2e test before prod deploy
* Add workflow images
* docs: continous integrationn
* Add default props to modal
* chore(release): publish [skip ci]
- @ohif/extension-cornerstone@1.5.1
- @ohif/extension-vtk@0.53.7
- @ohif/core@1.9.1
- @ohif/ui@0.62.2
- @ohif/viewer@2.8.3
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.53.8
- @ohif/core@1.10.0
- @ohif/ui@0.62.3
- @ohif/viewer@2.8.4
* ci: Redirect site traffic to index.html if file is not resolved
* ci: fix typo
* fix: 🐛 Code review. Remove 'global state' for displaySize
* fix: 🐛 Code review. Ref back to useMedia and pass value down
Code review. Ref back to useMedia and pass value down (components)
instead of creating a specialized hook to tied any component on it
* fix: translation switcher
* fix
* cleanup
* add missed translation
* fix: 🐛 Code review
* fix: 🐛 Fix unit tests
* fix: 🐛 Fix unit test
* fix: 🐛 Code merge solve conflicts. Missing files changes
* Merge from master. Missing files changes
* feat: 🎸 Code review. Fix issues with DatePicker
Fixed at least the minimum issue with datePicker and update some content
on every translation changed
* fix: 🐛 Code review. Style fix on modal
* fixes in general preferences after merge
* fix
* export default i18n language
* translation fixes
* increase snackbar zindex
* initialize language
* WIP propagate props<>state fixes
* fix state propagation
* remove hotkey error when reset default
* fix datePicker
* i18n updates
* fix i18n strings
* fix reset default -- set right input value
* fix default language
* fix e2e for user preferences
* small fix datePicker props
* remove i18n from window -- debugging purposes only
* lint fixes
* Testing dialog
* Refactor modal and add dialog component to simple dialog
* Use existent dialog
* Expect event from getText callback (annotation)
* Bump cornerstone-tools version
* Use simple dialog
* bump cornersotne version
* CR Update: Update dialgo method names and default values
* CR Update: Bump overlay and show only if theres at least one overlay prop set to true
* CR Update: Use percentage over view height in draggable area
* Fix broken test vtk checks WWWC tool
* Comment test (non-deterministic)
* fix: study list translations
* Don't render until translations are ready
* Try to wait for translations to load
* Use null to render "nothing"
* Try toggling useSuspense off up a layer
* logging
* Remove useSuspense false flags
* DO NOT OPEN A PR WITH IT.
Experimental changes only.
Try to solve issues with useTranslation hooks
#Please enter the commit message for your changes. Lines starting
* Remove unecessary changes
* feat: 🎸 useMedia hook to not use one more prop for upd state vl
* docs: Add license scan report and status (#1161)
Signed-off-by: fossabot <badges@fossa.io>
* fix: 🐛 Fix for JS breaking on header (#1164)
* feat: 🎸 Code review and refact
Revised code based on PRs(variable alias,...). Changed hook for
useMedia. Now, it provides two hooks: one to get displayMediaSize and
other to get Entity(component, objects...) based on displayMediaSize.
Implemented a similar solution for state manager to store
mediaQueryList(s) and displaySize for app.
* feat: 🎸 Fine tunning on mediaQuery value, fixed issue about it
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.53.6
- @ohif/ui@0.62.1
- @ohif/viewer@2.8.2
* Add new modal service
* Change serviceManager prop to servicesManager
* CR Update: fix casing and add required proptypes to providers
* CR Update: Improve ohifmodal proptypes
* CR Update: Fix typo in extensionmanager
* CR Update: add default props to service and check service in provider
* Refactor modal provider to better use its own state
* ci: don't build our master branch (#1177)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* Use modal instead of modal context
* Ci/promotable builds (#1179)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Change modal children order
* Ci/promotable builds (#1180)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* Ci/promotable builds (#1181)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* Ci/promotable builds (#1182)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Fix OHIFModal proptypes
* Ci/promotable builds (#1183)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Inline personal access token w/ env var
* Ci/promotable builds (#1184)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Inline personal access token w/ env var
* ci: workaround for sudo limitations
* ci: restore release workflow (#1185)
* ci: don't build our master branch
* Add netlify-cli as a dev dependency
* ci: trying a sheltered merge flow for promotions
* ci: try building with QUICK_BUILD flag
* Try using ~/repo prefix in command
* ci: make sure netlify command is available
* ci: use sudo for global command
* Inline personal access token w/ env var
* ci: workaround for sudo limitations
* ci: restore release workflow
* Pass services to each module, improve tests
* Add servicesManager test and registerServices method
* Fix key warning of snackbar elements
* Remove netlify-cli; we';ll install this on CI server
* Update staging and prod netlify site IDs
* Clean up NPM_PUBLISH step
* Clean up DOCS_PUBLISH step
* Clean up Deploy workflow
* Custom executor to override cypress config
* Spacing
* Use an existing docker hub image
* Switch to npx instead of digging into npm bin location
* Remove e2e test before prod deploy
* Add workflow images
* docs: continous integrationn
* Add default props to modal
* chore(release): publish [skip ci]
- @ohif/extension-cornerstone@1.5.1
- @ohif/extension-vtk@0.53.7
- @ohif/core@1.9.1
- @ohif/ui@0.62.2
- @ohif/viewer@2.8.3
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.53.8
- @ohif/core@1.10.0
- @ohif/ui@0.62.3
- @ohif/viewer@2.8.4
* ci: Redirect site traffic to index.html if file is not resolved
* ci: fix typo
* fix: 🐛 Code review. Remove 'global state' for displaySize
* fix: 🐛 Code review. Ref back to useMedia and pass value down
Code review. Ref back to useMedia and pass value down (components)
instead of creating a specialized hook to tied any component on it
* Merge from master. Missing files changes
* feat: 🎸 Code review. Fix issues with DatePicker
Fixed at least the minimum issue with datePicker and update some content
on every translation changed
* Test Cases for User Preferences
* CI fix
* Fix for CI
* Fix based on PR review comments
* Fix for script-tag issue on CI
* Fix for new selectors on Preferences Modal and CI failure
* feat: 🎸 Filter by url query param for seriesInstnaceUID
* fix: Set SR viewport as active by interaction (#1118)
* fix: Set SR viewport as active by interaction
* quick fix
* (eslint) add "before" as global variables
* add data-cy
* add data-cy
* create E2E test
* (E2E) create custom command to set layout size
* remove .only e2e
* remove throttle for onScroll
* feat: 🎸 Code review in progress
Code review. Move retrieveMEtadata load to separate folders. Some minor
code clean up
* feat: 🎸 Code review. Missing changes from previous commit
* feat: 🎸 Code review missing changes from previous commit
When sorting, Criteria for instance must use instanceNumber and not
instancesNumber
* feat: 🎸 Code review. Add more jsdoc info
* feat: 🎸 Code review. Prettify changed code
* feat: 🎸 Instead of filtering do promote. WIP
* feat: 🎸 Fix minor issue. Allow promote or filter
* feat: 🎸 Changing component to functional component
* Merge from master Part1/2
Conflicts solved:
both added: core/src/studies/services/wado/retrieveMetadataLoader.js
both added: core/src/studies/services/wado/retrieveMetadataLoaderAsync.js
both added: core/src/studies/services/wado/retrieveMetadataLoaderSync.js
both modified: viewer/src/connectedComponents/ViewerRetrieveStudyData.js
both modified: viewer/src/routes/ViewerRouting.js
* Merge process from master Part 1/2
Missing files from previous commit
* feat: 🎸 Add cancelable promises to cut async methods
* feat: 🎸 Missing changes from previous merge process
* feat: 🎸 Missing changes from previous merge process
* Visual testing for Cornerstone and VTK
* Fix for CI
* Review fix: Removed cornerstone function and added snapshot description
* Added snapshot description
* Fix for CI
* playing around
* Change extension init and preRegistration signature
* Clear test code
* Update core index test
* Fix test
* Tricking the bug
* Renaming file back to trick some weird bug
* feat: 🎸 Update hotkeys and user preferences modal
This feature fix incompatibility with existent hotkeys component and
adds user preferences modal back
Closes: #923
* Update preferences structure in store
* Hide window level section of user preferences
* Update modal to reflect current hotkey value
* Clone object with hotkeys before passing to manager
* CR Update: Extract hotkeys manager format code to manager
* Fix broken cypress test
* Use new modal provider
* Rename hotkeyDefinitions in hotkeyspreferences and use array as representation
* Update study test and remove unused styles
* Study list tests: Patient Name, MRN, Modality, Description
* Fixed field selector
* Desktop tests
* Fix for study list
* Added tablet tests and small refactor on aliases
* Fix based on reviews
* feat: 🎸 New modal provider
A new modal provider/context component to unify modal related code and
simplify modal use
Closes: #1086
* refactor(ModalContext): Keep current modal lib
* Update modal provider version according to PR #1116
* Update modal provider props to use inner props
* Add custom class prop
* CR Update: Refactor provider to extract specific modal
* Fix modal import
* CR Update: Move from spread to object assign
* CR Update: Add proptypes, use classnames dependency over interpolation and rename modal
* fix: 🎸 Update AboutModal to use new modal provider (#1116)
* feat: 🎸 Update AboutModal to use new modal provider
This feature updates the AboutModal component and Header to use the new
modal context (modal provider)
* feat(ModalProvider): Add title prop to provider
* fix(ModalContext): Add defaults on hide
* CR Updates: Refactor modal provider and fix import
* CR Update: Expose props and flat modal optons
* Use customclassname instead of static
* Add cypress tag
* test: set right viewport when layout is decreased (#1146)
* chore(release): publish [skip ci]
- @ohif/viewer@2.3.6
* fix: 🐛 Minor issues measurement panel related to description (#1142)
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.28
- @ohif/ui@0.58.5
- @ohif/viewer@2.3.7
* fix: 🐛 Upgrade react-vtkjs-viewport to fix volume orientation (#1143)
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.29
- @ohif/viewer@2.3.8
* CR Update: Extract and rename AboutModal to AboutContent
* feat: 🎸 New modal provider (#1110)
* feat: 🎸 New modal provider
A new modal provider/context component to unify modal related code and
simplify modal use
Closes: #1086
* refactor(ModalContext): Keep current modal lib
* Update modal provider version according to PR #1116
* Update modal provider props to use inner props
* Add custom class prop
* CR Update: Refactor provider to extract specific modal
* Fix modal import
* CR Update: Move from spread to object assign
* CR Update: Add proptypes, use classnames dependency over interpolation and rename modal
* chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.30
- @ohif/ui@0.59.0
- @ohif/viewer@2.4.0
* CR Update: Keep translation name
* CR Update: Reposition cy tag of about modal in the correct level
* feat: 🎸 Update DownloadModal to use new modal provider (#1119)
* feat: 🎸 Update AboutModal to use new modal provider
This feature updates the AboutModal component and Header to use the new
modal context (modal provider)
* feat(ModalProvider): Add title prop to provider
* feat(DownloadModal): Refactor to use new modal provider
* Update modal provider props
* Use translation for DownloadDialog
* CR Update: Use useTranslation hook
* CR Update: Extract downloadDialog and rename to downloadContent
* CR Update: Fix typo
* CR Update: Rename download content to viewport download form
* feat: 🎸 Filter by url query param for seriesInstnaceUID
* fix: Set SR viewport as active by interaction (#1118)
* fix: Set SR viewport as active by interaction
* quick fix
* (eslint) add "before" as global variables
* add data-cy
* add data-cy
* create E2E test
* (E2E) create custom command to set layout size
* remove .only e2e
* remove throttle for onScroll
* feat: 🎸 Code review in progress
Code review. Move retrieveMEtadata load to separate folders. Some minor
code clean up
* feat: 🎸 Code review. Missing changes from previous commit
* feat: 🎸 Code review missing changes from previous commit
When sorting, Criteria for instance must use instanceNumber and not
instancesNumber
* feat: 🎸 Code review. Add more jsdoc info
* feat: 🎸 Code review. Prettify changed code
* feat: 🎸 Code review
Changed case for seriesInstanceUID. Use qido to filter (async). Fallback
to no params and same api method(async)
* fix: #1075 Returning to the Study List before all series have finished loading throws multiple errors in console
* fix: 🐛 Addressing review feedback from issue #1075
Adding support for cancelable pattern
Closes: #1075
* fix: 🐛 update unit test for exports
Closes: #1075
* feat: 🎸 New modal provider
A new modal provider/context component to unify modal related code and
simplify modal use
Closes: #1086
* refactor(ModalContext): Keep current modal lib
* Update modal provider version according to PR #1116
* Update modal provider props to use inner props
* Add custom class prop
* CR Update: Refactor provider to extract specific modal
* Fix modal import
* CR Update: Move from spread to object assign
* CR Update: Add proptypes, use classnames dependency over interpolation and rename modal
* fix: get adapter store picker to show
* fix: error caused by DICOMWeb "empty object" for patientName
* formatting
* refactor: kill the pills
* Indicate modalities is missing if not provided
* Consistent modality display
* Make sure modalities styles are applied
* revert config
* fix: 🐛 Fix ghost shadow on thumb
Updated react-dnd package for the lates. Refactored thumbnail component
Closes: 1087
* feat: 🎸 Code review
Set flex instead of float. Add cypress tag to thumb container
* feat: 🎸 Code review. Revised style when no description
* init
* use workbox-window
* Try to accomodate SW hosted at non root url
* v5 updated namespaces
* Test w/ no prompt
* add icons to manifest
* remove scope for now
* add icon tile information to entrypoint
* See if we can skirt by without a duplicate install
* shift client claims to skip waiting message
* Remove prepended slash
* comment out cache handler for now
* Simplify service-worker to skip waiting and install when a new worker is detected
* Use generated icons
* Update rollbar config
* fix: Set SR viewport as active by interaction
* quick fix
* (eslint) add "before" as global variables
* add data-cy
* add data-cy
* create E2E test
* (E2E) create custom command to set layout size
* remove .only e2e
* remove throttle for onScroll
* feat: 🎸 Load spinner when selecting gcloud store. Add key on td
* feat: 🎸 Code review. Translate loading study status
* feat: 🎸 Code review. Minor code refactoring
* fix: add missing study and index declerations
* Newer version of react-dates (calendar input component)
* Add useMedia hook
* Add useDebounce hook
* Export hooks for consumption
* Pull search filter into own component
* StudyListWithData to StudyListRoute
* Rename pagination component
* Rename Toolbar
* CustomeDateRangePicker to plain ol' css
* Remove unused styles
* Misc
* Magic to make our "OR" filters work
* Play w/ Mobile styles
* Fix pagination pushing out max width for viewport
* Tidy up small and medium templates
* Remove unecessary nesting
* Better mobile header and logo styles
* Fix studyList font size
* Remove unused code
* hookup on click
* Fix table search selectors
* Cypress uses medium width
* Remove irrelevant test
* Fix primary sort
* Fix sort for our smaller displays
* fix study list sometimes longer than specified rowsPerPage
* Simplify date picker styles
* restore study date filters
* Fix about table styling
* fix take value for search
* Fix header sizing for viewer and list route
* Remove dead code
* Restore isLoading
* Update platform/ui/src/components/studyList/StudyList.styl
Co-Authored-By: Rodrigo Antinarelli <rodrigoantinarelli@gmail.com>
* Attempt first usage of translations w/ hooks
* Pull from react-i18n library
* Fit presets on to a single line
* add no results message
* Show error message in studyList table
* Update input selectors for e2e tests
* Make sure messages span all columns
* fix test selector for table results
* Skip hover for result rows
* fix imports
* Date filtering w/ config
* Default export
* Pushed to PageComponent
* Remove DropZone
This previously only worked for null/undefined studies. I'm unable to trigger the state by testing the data. This "might" have happened when using a fresh/empty PACS; but even an empty array of studies would not show
* Try workaround for percy snapshot
* Return our modified document
* test: some dark magic to make it possible to take screenshots of WebGL canvases
* Apply transformation directly to test DOM
* investigate: window:before:load
* Register flag in correct place; add experimental-webgl check
* Remaining canvas fixes
* Remove comment
* E2E tests: Stack Scroll, Right-click to zoom, Middle-click to Pan
* About modal tests and added some cypress selectors
* Checking app version number
* Removed accidental import
* Review fixes
* feat: 🎸 Load spinner when selecting gcloud store. Add key on td
* feat: 🎸 Code review. Translate loading study status
* feat: 🎸 Code review. Minor code refactoring
* fix: add missing study and index declerations
* test: Improviment on VTK beforeEach hook (#1057)
* feat: 🎸 Some improvements on table cell and react lifecycle
* feat: 🎸 Prevent component update on a not searchData changing
* feat: 🎸 Some cypress improv to pass ci
* feat: 🎸 Code reviewe and also fixing list for gcloud
* feat: 🎸 Code review. Add spinner on first load of store
* feat: 🎸 Code review. Centering loading list spinner icon
* Adding Percy Snapshot on VTK, PDF and Microscopy tests
* Small improvement to always click on first search result
* Wait for search result
* Added timouts all over the code to avoid intermitted failures in CI
* Increasing Default Timeout and other configs
* Cleaning up the code
* try force enabling gpu
* Try custom executor with newer version of chrome
* Fix based on review comments
* Increased minimum thumbnails expected on VTK test
* Fix config validation
* Make sure we're using the chrome browser
* feat: 🎸 Progressive volume loading for vtk viewport
Adds progressive volume loading for vtkjs viewport whilst the frames are
streamed from PACs and rebuilt in the volume.
Closes: closes#1051
* Update to react-vtkjs-viewport 0.3.0
* Test cases for extensions: VTK, HTML and PDF
* Test Cases: Delete measurement, Relabel and Description through Contextmenu
* Fix: PDF, HTML and VTK extensions
* CI: running into different folders for PWA and Script-tag tests
* CI: running into different folders for PWA and Script-tag tests
* CI: running into different folders for PWA and Script-tag tests
* Fix for VTK tests and Cornerstone Eraser tool
* Removed VTK alias from Cornerstone aliases initialization
* Temporary fix for Eraser tool
* Test workaround
* Use juno for vtk
* Shift VTK tests to PWA folder
* feat: 🎸 Only allow reconstruction of datasets that make sense
Only allow reconstruction of datasets which are imaging data, that have
frames in the same orientation, with the same size and make sense to be
reconstructed in 3D.
Closes: #561
* feat: Implement a 'Exit 2D MPR' button in the toolbar to act as a toggle when '2D MPR' button is clicked
* Move logic to exit MPR and toggling into ConnectedPluginSwitch and PluginSwitch. Also, discard the ConnectedExitPluginSwitch and ExitPluginSwitch components.
* Update ToolbarRow.js
* show package bundle progress
* Ability to run "quick builds" for faster feedback on status checks (e2e)
* ci: speed up PR checks
* specify quick build value
* Fix for test scripts that were failing in CI
* Test cases for tools: Length and Angle
* Test cases implemented: Scroll series, Levels, Pan, Reset, Zoom
* Added test cases for tools: Cine, More, Layout, Invert, Rotate, FlipH, FlipV
* Fixes made according to comments on PR review
* Fixes for failing scenarios: Layout and Cine
* Test cases implemented: Cornerstone tools Clear and Eraser; Measurement panel Relabel and Description
* Fix for CI failure
* Better css chunk filenames depending on context
* skip minimize flag to speed up builds that are timing out (short-term fix)
* make sure our custom TerserJS config is actually applied
* Use SKIP_MINIMIZE flag for netlify and demo builds
* fix: 🐛 set current viewport as active when switching layouts
check if current viewport index is less than the current layout lenght
and set 0 if so or keep current selected cell index as active viewport
Closes: 999
* chore: 🤖 commenting out docker layer caching in the short-term
commenting out docker layer caching in the short-term
* refactor: 💡 refactor layout matrix index conditional
* Fix for test scripts that were failing in CI
* Test cases for tools: Length and Angle
* Test cases implemented: Scroll series, Levels, Pan, Reset, Zoom
* Added test cases for tools: Cine, More, Layout, Invert, Rotate, FlipH, FlipV
* Fixes made according to comments on PR review
* Fixes for failing scenarios: Layout and Cine
* fix: 🐛 Local file: failing when retrieving segmentation data
Fix segmentation data retrieval issues for local file. Changed from
fecthing to use cornerstone loadAndCache method
BREAKING CHANGE: DICOM Seg
Closes: part of #838
* Switch SEG retrieval to WADO-RS
* Forgot a debugger
* refactor: 💡 Code refactor. Minor changes into methods
* fix: 🐛 Load local files: PDF
Items:
1. FileLoaderService: used for serveral operations on local files(load it, get list of studies, group them, accepting dicom and pdf)
2. DicomLoaderService: used for loading dicom based on dataset and studies. Depending on type of dicom loader might change. WIP
3. Refactor PDF and handleSegmentationStorage to use DicomLoaderService
* fix: 🐛 Code review
* fix: 🐛 Code review. Changed:Folder organization and dicom file
Move fileLoaderService and others to a specific folder. When loading
dicom file change to only retrieve the file(not use cornerstone to cache
or anything else).
* fix: 🐛 Code review. Move dicomLoaderService to core
Moved dicomLoaderService to ohif/core and localFileLoaders to a specific
folder.
* fix: 🐛 Code review
Simplified method to get study for dicom file. Added error handling on
file loading. DicomLoaderService to be exposed on ohif/core/utils
instead.
* fix: 🐛 Reduce local load to one method only
Reduced local file load to one method only
* fix: 🐛 HTML to use dicomLoaderService. Prefer wadors than (uri)
* fix: 🐛 Code implementation for multiframe files
* fix: 🐛 Code review. Default local loader to dicom
Closes: 838
* fix: 🐛 Code review. Use relative path to require DICOMWeb
Closes: 838
* fix: 🐛 Code review. Fix unit test. Added DicomLoaderService mod
Closes: 838
* fix: 🐛 Code review. Add 'Seg' on left thumb
When getting/creating dataset get modality for file/image read
Closes: 838
* fix: 🐛 commonjs/umd fonts import
Importing font into index-umd.js and creating a simple font css file
with font-face
Closes: #724
* fix: 🐛 Enabling workbox to cache webfonts and fonts-stylesheets
Closes: #724
* fix: 🐛 Adding all type of fonts from google - Roboto
Closes: #724
* fix: 🐛 Set series into active viewport by clicking on thumbnail
Users should be able to set the series for the active viewport by
clicking it's thumbnail into Study browser
Closes: #895
* fix: 🐛 Set series into active viewport by clicking on thumbnail
Small refactor into onClick data callback and thumbnailClick function
Closes: #895
* fix: 🐛 Refactor thumbnail click code changes
* fix: 🐛 We must clear the sopInstanceUid if we don't update it together with the viewportSpecificData, preventing console warning.
* fix: 🐛 Cleaning up a few more code changes
* TEST E2E: Drag and drop thumbnail into viewport
* TEST E2E: Drag and drop thumbnail into viewport
* fix: add pollyfill to script-tag template
* Add wait's to command
* Try to store artifacts
* ci: updated artifact location
* Changing Patient to MisterMR
* Refactors based on PR comments
* Adding new sub-folders to separate the testing scripts according to context/features
* Adding test cases for Side Panels Measurements and Series
* Removing duplicated file OHIFStudyViewer.spec.js
* refactor: 💡 React components to consume appConfig using Context
React components to consume app configuration using React Context and
React Hooks. Non React components to continue using global variable
window.config. Related documentation also changed.
Closes: #725
* refactor: 💡 Removing unecessary code
On current React component there is no need to import useContext method
from React, so, removing it.
* refactor: 💡 Code review
Code review. Minor changes based on review inputs and moving userManager
to an init method
BREAKING CHANGE: #725Closes: #725
* docs: don't include implementation detail in docs
* docs: don't include implementation detail in docs
* docs: no need to specify implementation details in employment recipe
* docs: no need to specify implementation details in deployment recipe
* ci: test docs-publish
* Specify to use prod
* Babel should transpile with env set by webpack
* in-progress
* in-progress
* Polyfill for ie11 and edge features
* Ditch polyfills w/ babel - we'll use a service for now
* Bump tools version; shift vtk.js up a layer
* Specify we shouldn't target older than IE 11
* ditch babel plugins that should be covered by preset-env
* Add a top level build demo command
* Let our babel config determine settings
* Same babel fixes as PWA
* Rebuild deps that don't satisfy our target
* Mini helper script for excluding all node_modules, except...
* Shift vtk.js dep up a layer
* Kill core-js
* Export in a node happy way
* Updated yarn lock
* Set NODE_ENV when launching anything w/ WebPack
* docs: updated FAQ
* docs: on browser support
* Add support for redux browser extension
* misc. small clean-up
* docs: Remove roadmap page; add browser-support to sidebar
* Formatting
* Remove roadmap links
* Formatting
* ci: Remove config syntax error
* Simplified bug report template
* update community request template
* Update question's template
* simplify build scripts
* specify new script names
* fix: for measurement api being pruned by minimizer in prod builds
* Use named exports
* Simplify config
* Let's not do so much heavy lifting for a dev-server build
* fix dev build
* Add hotkeys to demo
* fix: jest babel config and env specific configs
* Remove call to non-existant command
* Shift experimental proposal plugin up a layer
* Use `https`
* Try with reduced number of package exceptions
* Try to resolve cypress issue
* Try to fix cypress issue in CI
* Skip https
* Set node_env before building with WebPack
* Watch command output
* ci: no output timeout increase
* ci: test docs-publish
* Specify to use prod
* Babel should transpile with env set by webpack
* in-progress
* in-progress
* Polyfill for ie11 and edge features
* Ditch polyfills w/ babel - we'll use a service for now
* Bump tools version; shift vtk.js up a layer
* Specify we shouldn't target older than IE 11
* ditch babel plugins that should be covered by preset-env
* Add a top level build demo command
* Let our babel config determine settings
* Same babel fixes as PWA
* Rebuild deps that don't satisfy our target
* Mini helper script for excluding all node_modules, except...
* Shift vtk.js dep up a layer
* Kill core-js
* Export in a node happy way
* Updated yarn lock
* Set NODE_ENV when launching anything w/ WebPack
* docs: updated FAQ
* docs: on browser support
* Add support for redux browser extension
* misc. small clean-up
* docs: Remove roadmap page; add browser-support to sidebar
* Formatting
* Remove roadmap links
* Formatting
* ci: Remove config syntax error
* Simplified bug report template
* update community request template
* Update question's template
* simplify build scripts
* specify new script names
* fix: for measurement api being pruned by minimizer in prod builds
* Use named exports
* Simplify config
* Let's not do so much heavy lifting for a dev-server build
* fix dev build
* Add hotkeys to demo
* fix: jest babel config and env specific configs
* Remove call to non-existant command
* Shift experimental proposal plugin up a layer
* Use `https`
* Try with reduced number of package exceptions
* Try to resolve cypress issue
* Try to fix cypress issue in CI
* Skip https
* ci: test docs-publish
* Specify to use prod
* Babel should transpile with env set by webpack
* chore: production defaults to true; set in --env.production by cli
* Remove lingering merge issue
* Add minimification plugins
* Need relative URLs to find root assets
* Default public url to forward slash in define plugin
* Don't wrap w/ react-hot-loader if we're building for production
* No need to log extensions
* Minimize using terser; and minimize css
* Import redux from es; this bypasses commonjs as import and fixes our "production build" warning
* Split commone webpack build for now to test hotfix
* postfix slash
* undefined safe env access
* Try to fix node_env prod issue w/ redux
* Set NODE_ENV production for all prod builds
* Syntax error
* nix tests
* Increase max amount of available memory
* Don't run bundle analyzer by default
* fix: asset resolution when at non-root route
* ci: test docs-publish
* Specify to use prod
* Babel should transpile with env set by webpack
* chore: production defaults to true; set in --env.production by cli
* Remove lingering merge issue
* Add minimification plugins
* Need relative URLs to find root assets
* Default public url to forward slash in define plugin
* Don't wrap w/ react-hot-loader if we're building for production
* No need to log extensions
* Minimize using terser; and minimize css
* Import redux from es; this bypasses commonjs as import and fixes our "production build" warning
* Split commone webpack build for now to test hotfix
* postfix slash
* undefined safe env access
* Try to fix node_env prod issue w/ redux
* Set NODE_ENV production for all prod builds
* Syntax error
* nix tests
* Increase max amount of available memory
* Don't run bundle analyzer by default
* ci: test docs-publish
* Require unit tests for dry run
* ci: Make sure our docs publish is executable
* Try to correct path issue
* Try repo prefix
* Try as yarn command
* Need a workspace to attach to from previous step
* Add before we call our bash script
* See if we can enforce commands being available -- or just install locally?
* Try again
* Try SSH
* Include username in gh https url
* Note regarding failure on PR branches
* Remove docs publish from PR workflow
* chore: ability to specify an alternative html-template at build time
* chore: add command to build demo PWA website output
* chore: remove unused CI code
* Testing GCP capabilities
* syntax
* Naming
* naming
* chore: WebPack output progress that we care about
* chore: Only publish the app config we care about
* PWA should publish source map
* Unused index.html file
* chore: Remove unused copy-webpack-plugin ignore
* Don't generate source map until we resolve memory issue
* ci: attempt to publish with GCP bucket deploy
* Update dev config to use new template loccations and env vars
* ci: test docs-publish
* Require unit tests for dry run
* ci: Make sure our docs publish is executable
* Try to correct path issue
* Try repo prefix
* Try as yarn command
* Need a workspace to attach to from previous step
* Add before we call our bash script
* See if we can enforce commands being available -- or just install locally?
* Try again
* Try SSH
* Include username in gh https url
* Note regarding failure on PR branches
* Remove docs publish from PR workflow
* chore: ability to specify an alternative html-template at build time
* chore: add command to build demo PWA website output
* chore: remove unused CI code
* Testing GCP capabilities
* syntax
* Naming
* naming
* chore: WebPack output progress that we care about
* chore: Only publish the app config we care about
* PWA should publish source map
* Unused index.html file
* chore: Remove unused copy-webpack-plugin ignore
* Don't generate source map until we resolve memory issue
* ci: attempt to publish with GCP bucket deploy
* ci: test docs-publish
* Require unit tests for dry run
* ci: Make sure our docs publish is executable
* Try to correct path issue
* Try repo prefix
* Try as yarn command
* Need a workspace to attach to from previous step
* Add before we call our bash script
* See if we can enforce commands being available -- or just install locally?
* Try again
* Try SSH
* Include username in gh https url
* Note regarding failure on PR branches
* Remove docs publish from PR workflow
* chore: ability to specify an alternative html-template at build time
* chore: add command to build demo PWA website output
* chore: remove unused CI code
* Testing GCP capabilities
* syntax
* Naming
* naming
The props for ExpandableToolMenu were changed from expecting `text` to
expecting `label` for the menu's label. These changes make sure we're
providing it that way.
* init
* more shifting
* Move @babel dependencies up to workspace root
* Begin updating dependent libraries to use sync'd webpack builds w/ watches
* Commit changes before a long weekend
* Split packages into platform and extensions
* Consolidate how/where we specify file/module type entrypoints
* Make it possible to pass in extensions as App props
* Resolve viewer's modules
* Target for UMD bundle
* Add Webpack Stylus loader
* Provide WebPack build options for microscopy, vtk, and ui
* Better entrypoint for extensions
* Push changes up to switch PCs
* Fix ESM symlink build for Viewers
* Shift docs to root
* Specify additional lerna config props
* Begin providing basic readme info
* Rename example extension folder
* Shift links to bottom of doc
* First attempt at a netlify deploy preview
* Attempt to fix deploy preview build
* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands
* Try to use global gitbook-cli
* Export node_modules path
* More agressive with modifying PATH
* Follow deploy log output advice
* try again to set bin path
* Try swapping bash with a new shell
* Try bash -l instead of exec bash
* Annd let's try again
* and again
* We may have figured it out johnny, boy
* We need to pull cornerstone-wado-image-loader files from hoisted node_modules
* Attempt to fix ticks/escapes
* Change copy syntax; try running tests on viewers from root for circleci
* Lower version to match circleci image
* Try alternative jest-canvas-mock location and version file syntax
* Run version command instead of calling node directly
* Try alternative jest transform
* Set path and enable workspaces
* Add codecov flags
* Use cpx so our copying finishes?
* Get all platform unit tests to run
* Run and report individually and in parallel
* Try once relying on codecov yaml to split w/ flags
* Add projects to split by flags
* Generate separate reports
* Trigger codecov after everything has finished running; these may not support flags
* Use recommended flags from issue comments for codecov
* Fix typo
* Remove clear flag
* Shift back to calling codecov from root
* Generate example for codecov issue
* Try fixing paths
* Simplify
* Try using codecov orb
* Bump circleci version
* Upload core and viewer
* Use full string paths
* Remove individual codecov calls
* Fix dir
* Combine files before upload
* Escape anchors
* tryfix syntax
* Escape string literal
* Combine lines to reduce path
* long paths
* Use home alias
* Fix filename
* Try to see the contents of our cat'd file
* Also upload `core`
* Try running with aliased folder
* Fix path; split PR and Merge unit tests into separate jobs
* Set default threshold
* Fix typo
* Changing to scoped package names
* Adding note
* Catch more updates
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.0
- @ohif/extension-dicom-html@0.0.4-alpha.0
- @ohif/extension-dicom-microscopy@0.0.9-alpha.0
- @ohif/extension-dicom-pdf@0.0.8-alpha.0
- @ohif/extension-vtk@0.1.4-alpha.0
- @ohif/core@0.11.1-alpha.0
- @ohif/i18n@0.2.3-alpha.0
- @ohif/ui@0.2.18-alpha.0
- @ohif/viewer@0.0.22-alpha.0
* Clean up primary readme
* Support for dev and dev:* commands
* Shift build command; satisfy default PWA build
* Remove old scripts
* Clean up UI to set webpack scripts
* Tidy up project links
* Clean duplicate code in UI project
* Update UI project's docs
* Clean up ui and i18n config
* Reduce duplicate code in `@ohif/core`
* Fix @ohif/ui versions
* bump @ohif/core versions
* Redux testkit dep
* Remove unused/duplicate config files for projects/packages
* ohif-core --> @ohif/core
* Safer publish command
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.1
- @ohif/extension-dicom-html@0.0.4-alpha.1
- @ohif/extension-dicom-microscopy@0.0.9-alpha.1
- @ohif/extension-dicom-pdf@0.0.8-alpha.1
- @ohif/extension-vtk@0.1.4-alpha.1
- @ohif/core@0.11.1-alpha.1
- @ohif/i18n@0.2.3-alpha.1
- @ohif/ui@0.2.18-alpha.1
- @ohif/viewer@0.0.22-alpha.1
* test version bump
* Add global prettier config
* chore(release): publish %s [skip ci]
- @ohif/viewer@0.0.22-alpha.2
* test lerna publish
* Update package.jsons
* Fix build scripts
* catch changes
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.2
- @ohif/extension-dicom-html@0.0.4-alpha.2
- @ohif/extension-dicom-microscopy@0.0.9-alpha.2
- @ohif/extension-dicom-pdf@0.0.8-alpha.2
- @ohif/extension-vtk@0.1.4-alpha.2
- @ohif/core@0.11.1-alpha.2
- @ohif/i18n@0.2.3-alpha.2
- @ohif/ui@0.2.18-alpha.2
- @ohif/viewer@0.0.22-alpha.3
* fix eslint issues caused by eslint 6 and our react-app config
* Publish with canary tag
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.3
- @ohif/extension-dicom-html@0.0.4-alpha.3
- @ohif/extension-dicom-microscopy@0.0.9-alpha.3
- @ohif/extension-dicom-pdf@0.0.8-alpha.3
- @ohif/extension-vtk@0.1.4-alpha.3
- @ohif/core@0.11.1-alpha.3
- @ohif/i18n@0.2.3-alpha.3
- @ohif/ui@0.2.18-alpha.3
- @ohif/viewer@0.0.22-alpha.4
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.4
- @ohif/extension-dicom-html@0.0.4-alpha.4
- @ohif/extension-dicom-microscopy@0.0.9-alpha.4
- @ohif/extension-dicom-pdf@0.0.8-alpha.4
- @ohif/extension-vtk@0.1.4-alpha.4
- @ohif/core@0.11.1-alpha.4
- @ohif/i18n@0.2.3-alpha.4
- @ohif/ui@0.2.18-alpha.4
- @ohif/viewer@0.0.22-alpha.5
* Simplify build
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.5
- @ohif/extension-dicom-html@0.0.4-alpha.5
- @ohif/extension-dicom-microscopy@0.0.9-alpha.5
- @ohif/extension-dicom-pdf@0.0.8-alpha.5
- @ohif/extension-vtk@0.1.4-alpha.5
- @ohif/core@0.11.1-alpha.5
- @ohif/i18n@0.2.3-alpha.5
- @ohif/ui@0.2.18-alpha.5
- @ohif/viewer@0.0.22-alpha.6
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.6
- @ohif/extension-dicom-html@0.0.4-alpha.6
- @ohif/extension-dicom-microscopy@0.0.9-alpha.6
- @ohif/extension-dicom-pdf@0.0.8-alpha.6
- @ohif/extension-vtk@0.1.4-alpha.6
- @ohif/core@0.11.1-alpha.6
- @ohif/i18n@0.2.3-alpha.6
- @ohif/ui@0.2.18-alpha.6
- @ohif/viewer@0.0.22-alpha.7
* Split version and publish
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.7
- @ohif/extension-dicom-html@0.0.4-alpha.7
- @ohif/extension-dicom-microscopy@0.0.9-alpha.7
- @ohif/extension-dicom-pdf@0.0.8-alpha.7
- @ohif/extension-vtk@0.1.4-alpha.7
- @ohif/core@0.11.1-alpha.7
- @ohif/i18n@0.2.3-alpha.7
- @ohif/ui@0.2.18-alpha.7
- @ohif/viewer@0.0.22-alpha.8
* Try simplify netlify build
* react-viewerbase --> @ohif/ui
* add test for stylus loader
* Try new way to specify publish path
* Use an output folder that won't be ignored
* Try move command
* fiddle with paths
* Dig for some information
* Make sure we're in root for our commands
* Remove discovery
* Setup script-tag example
* Fix typo
* Move config folder
* Update cornerstone extension to use shared/root webpack configs
* capture changes
* Update extension webpack configs
* Don't check in docz output
* Fix babel runtime resolution issue
* Simplify ui build steps
* Push in progress
* Shift directories
* Get viewer dev path to work
* Fix viewer commonjs build
* Fix build pwa config for viewers
* Make sure our package specific command can be called from root
* Update notes
* Fix imports and misc. merge notes
* Bump wado-image-loader version
* Switch up commands to remove webworkers copy
* Fix CI config
* Fix more broken package references
* Add react-dropzone
* Persist so e2e test can use
* Fix lockfile
* Use cypress orb to simplify CI
* Fix config
* Try again
* Install yarn latest for orb
* Install yarn a different way
* Wait on correct port
* Run tests in viewer project
* Fix cypress config
* Make Cypress happier - use default location
* Simplify e2e testing
* Capture UI changes since fork
* Catch core up
* Grab latest deps after merge
* Fix broken import
* Make sure cornerstone-wado-image-loader resolves to 3+
* Note regarding orbs
* Fix refresh on 404 routes
* Fix odd error for cornerstone-wado-image-loader
* Different target for UMD
* Simplify dev script
* Try to get fancy with netlify output
* Let's do it again
* Try to fix measurementTools issue
* See if we can get our lerna magic to work on merge to monorepo branch
